Index of /kundaje/marinovg/oak/various/ENCODE4/Chromatin-nanopores/2025-02-27-NextSeq-run

[ICO]NameLast modifiedSizeDescription

[PARENTDIR]Parent Directory  -  
[   ]2016-11-16-refFlat.TSS-profile-L3618-Hi-SMF_test_20uL_CseDa01_REPLI-g_targeted_NEB_pool.hg382025-02-28 23:56 95K 
[   ]2016-11-16-refFlat.TSS-profile-L3619-Hi-SMF_test_20uL_CseDa01_REPLI-g_targeted_NEB_pool.hg382025-02-28 23:57 95K 
[   ]2016-11-16-refFlat.TSS-profile-L3620-500K_10uL_CseDa01.hg382025-03-01 00:11 98K 
[   ]2016-11-16-refFlat.TSS-profile-L3621-2.5M_10uL_CseDa01.hg382025-03-01 00:12 98K 
[   ]2016-11-16-refFlat.TSS-profile-L3622-6M_10uL_CseDa01.hg382025-03-01 00:15 98K 
[   ]2016-11-16-refFlat.TSS-profile-L3623-500K_denatured_10uL.hg382025-03-01 00:15 98K 
[   ]2016-11-16-refFlat.TSS-profile-L3624-2.5M_denatured_10uL.hg382025-03-01 00:15 98K 
[   ]ChIP_ChRIP.config2025-02-28 07:16 3.3K 
[   ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3618-Hi-SMF_test_20uL_CseDa01_REPLI-g_targeted_NEB_pool.hg382025-02-28 23:57 95K 
[   ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3619-Hi-SMF_test_20uL_CseDa01_REPLI-g_targeted_NEB_pool.hg382025-03-01 00:05 96K 
[   ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3620-500K_10uL_CseDa01.hg382025-03-01 00:11 98K 
[   ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3621-2.5M_10uL_CseDa01.hg382025-03-01 00:15 98K 
[   ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3622-6M_10uL_CseDa01.hg382025-03-01 00:08 98K 
[   ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3623-500K_denatured_10uL.hg382025-03-01 00:15 98K 
[   ]K562-CTCF-ENCFF119XFJ-vs-FIMO-intersection2-profile-L3624-2.5M_denatured_10uL.hg382025-03-01 00:16 98K 
[   ]L3604-ChIRP_odd-L3605-ChIRP_even.IDR2025-03-01 04:46 0  
[   ]L3604-ChIRP_odd.1x50mers.unique.MACS-2.1.0.p1e-1_model.r2025-03-01 02:32 89K 
[   ]L3604-ChIRP_odd.1x50mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2025-03-01 02:33 8.1M 
[   ]L3604-ChIRP_odd.1x50mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.300K.gz2025-03-01 04:43 4.1M 
[   ]L3604-L3604-odd-vs-even-intersection12025-03-01 04:22 2.5K 
[   ]L3604-L3604-odd-vs-even-intersection1-vs-L3616-L3617-odd-vs-even-intersection1-intersection12025-03-01 04:27 1.2K 
[   ]L3604-L3604-odd-vs-even-intersection1-vs-L3616-L3617-odd-vs-even-intersection1-intersection22025-03-01 04:27 2.6K 
[   ]L3604-L3604-odd-vs-even-intersection1-vs-L3616-L3617-odd-vs-even-intersection1-outersection12025-03-01 04:27 1.4K 
[   ]L3604-L3604-odd-vs-even-intersection1-vs-L3616-L3617-odd-vs-even-intersection1-outersection22025-03-01 04:27 799  
[   ]L3604-L3604-odd-vs-even-intersection22025-03-01 04:22 2.8K 
[   ]L3604-L3604-odd-vs-even-outersection12025-03-01 04:22 1.1M 
[   ]L3604-L3604-odd-vs-even-outersection22025-03-01 04:22 143K 
[   ]L3605-ChIRP_even.1x50mers.unique.MACS-2.1.0.p1e-1_model.r2025-03-01 02:32 87K 
[   ]L3605-ChIRP_even.1x50mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2025-03-01 02:33 17M 
[   ]L3605-ChIRP_even.1x50mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.300K.gz2025-03-01 04:43 4.0M 
[   ]L3616-L3617-odd-vs-even-intersection12025-03-01 04:22 3.3K 
[   ]L3616-L3617-odd-vs-even-intersection22025-03-01 04:22 3.8K 
[   ]L3616-L3617-odd-vs-even-outersection12025-03-01 04:22 54K 
[   ]L3616-L3617-odd-vs-even-outersection22025-03-01 04:22 25K 
[   ]L3616-PT3_ChIRP_odd-L3617-PT3_ChIRP_even.IDR2025-03-01 04:46 0  
[   ]L3616-PT3_ChIRP_odd.1x50mers.unique.MACS-2.1.0.p1e-1_model.r2025-03-01 02:42 87K 
[   ]L3616-PT3_ChIRP_odd.1x50mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2025-03-01 02:45 31M 
[   ]L3616-PT3_ChIRP_odd.1x50mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.300K.gz2025-03-01 04:43 4.2M 
[   ]L3617-PT3_ChIRP_even.1x50mers.unique.MACS-2.1.0.p1e-1_model.r2025-03-01 02:33 89K 
[   ]L3617-PT3_ChIRP_even.1x50mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.gz2025-03-01 02:35 18M 
[   ]L3617-PT3_ChIRP_even.1x50mers.unique.MACS-2.1.0.p1e-1_peaks.narrowPeak.sorted.300K.gz2025-03-01 04:43 4.2M 
[   ]MACS2025-02-28 11:38 505  
[   ]MACS-region-stats2025-02-28 11:38 692  
[   ]MACS2-overlap.files2025-03-01 04:20 936  
[   ]MACS2-overlap.table2025-03-01 04:22 824  
[DIR]PNG/2025-03-01 05:39 -  
[   ]SAMstats-1x36mers.files2025-02-28 07:21 1.1K 
[TXT]SAMstats-1x36mers.sh2025-02-28 07:21 4.2K 
[   ]SAMstats-1x36mers.table2025-02-28 11:18 1.0K 
[   ]SAMstats_CseDa01.files2025-02-28 11:14 1.5K 
[   ]SAMstats_CseDa01.table2025-02-28 22:51 1.3K 
[   ]SAMstats_CseDa01_files.tar.gz2025-02-28 22:51 1.5K 
[TXT]SampleSheet.csv2025-02-28 08:59 1.7K 
[   ]TSS-profile-L3620-500K_10uL_CseDa01.Smic_04-503SCI.032025-02-28 23:55 78K 
[   ]TSS-profile-L3621-2.5M_10uL_CseDa01.Smic_04-503SCI.032025-02-28 23:55 88K 
[   ]TSS-profile-L3622-6M_10uL_CseDa01.Smic_04-503SCI.032025-02-28 23:55 69K 
[   ]TSS-profile-L3623-500K_denatured_10uL.Smic_04-503SCI.032025-02-28 23:55 88K 
[   ]TSS-profile-L3624-2.5M_denatured_10uL.Smic_04-503SCI.032025-02-28 23:55 95K 
[   ]all.250227_NB551514_0266_AHHGYWBGYW.fastq.lines2025-02-28 09:55 11  
[TXT]bedRPKMfromBAM.sh2025-02-28 07:26 2.4K 
[TXT]macs2.sh2025-02-28 07:24 2.0K 
[TXT]makewiggle-1x36mers.sh2025-02-28 07:20 3.5K 
[TXT]makewiggle-stranded-1x36mers.sh2025-02-28 07:20 7.5K 
[TXT]map-1x36mers.sh2025-02-28 07:19 9.0K 
[TXT]run_spp.sh2025-02-28 07:20 2.1K 
[TXT]samtools-index-1x36mers.sh2025-02-28 07:21 1.6K 
[   ]signal-around-L3604-L3604-odd-vs-even-intersection1-L3602-ChIRP_P.gz2025-03-01 05:00 8.3K 
[IMG]signal-around-L3604-L3604-odd-vs-even-intersection1-L3602-ChIRP_P.png2025-03-01 05:33 940  
[   ]signal-around-L3604-L3604-odd-vs-even-intersection1-L3603-ChIRP_N.gz2025-03-01 05:00 8.7K 
[IMG]signal-around-L3604-L3604-odd-vs-even-intersection1-L3603-ChIRP_N.png2025-03-01 05:33 1.0K 
[   ]signal-around-L3604-L3604-odd-vs-even-intersection1-L3604-ChIRP_odd.gz2025-03-01 05:00 9.7K 
[IMG]signal-around-L3604-L3604-odd-vs-even-intersection1-L3604-ChIRP_odd.png2025-03-01 05:33 1.6K 
[   ]signal-around-L3604-L3604-odd-vs-even-intersection1-L3605-ChIRP_even.gz2025-03-01 05:00 9.9K 
[IMG]signal-around-L3604-L3604-odd-vs-even-intersection1-L3605-ChIRP_even.png2025-03-01 05:33 2.3K 
[   ]signal-around-L3604-L3604-odd-vs-even-intersection1-L3612-Mkay_ChIRP_input_1.gz2025-03-01 05:00 12K 
[IMG]signal-around-L3604-L3604-odd-vs-even-intersection1-L3612-Mkay_ChIRP_input_1.png2025-03-01 05:33 5.0K 
[   ]signal-around-L3604-L3604-odd-vs-even-intersection1-L3616-PT3_ChIRP_odd.gz2025-03-01 05:00 10K 
[IMG]signal-around-L3604-L3604-odd-vs-even-intersection1-L3616-PT3_ChIRP_odd.png2025-03-01 05:33 3.1K 
[   ]signal-around-L3604-L3604-odd-vs-even-intersection1-L3617-PT3_ChIRP_even.gz2025-03-01 05:00 9.0K 
[IMG]signal-around-L3604-L3604-odd-vs-even-intersection1-L3617-PT3_ChIRP_even.png2025-03-01 05:33 1.9K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection1-L3602-ChIRP_P.gz2025-03-01 05:00 232K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection1-L3602-ChIRP_P.png2025-03-01 05:34 134K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection1-L3603-ChIRP_N.gz2025-03-01 05:07 294K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection1-L3603-ChIRP_N.png2025-03-01 05:34 190K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection1-L3604-ChIRP_odd.gz2025-03-01 05:00 732K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection1-L3604-ChIRP_odd.png2025-03-01 05:34 541K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection1-L3605-ChIRP_even.gz2025-03-01 05:00 589K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection1-L3605-ChIRP_even.png2025-03-01 05:34 846K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection1-L3612-Mkay_ChIRP_input_1.gz2025-03-01 05:00 2.9M 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection1-L3612-Mkay_ChIRP_input_1.png2025-03-01 05:34 3.5M 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection1-L3616-PT3_ChIRP_odd.gz2025-03-01 05:00 973K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection1-L3616-PT3_ChIRP_odd.png2025-03-01 05:34 1.4M 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection1-L3617-PT3_ChIRP_even.gz2025-03-01 05:00 659K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection1-L3617-PT3_ChIRP_even.png2025-03-01 05:34 642K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection2-L3602-ChIRP_P.gz2025-03-01 05:00 31K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection2-L3602-ChIRP_P.png2025-03-01 05:33 17K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection2-L3603-ChIRP_N.gz2025-03-01 05:06 41K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection2-L3603-ChIRP_N.png2025-03-01 05:33 26K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection2-L3604-ChIRP_odd.gz2025-03-01 05:06 69K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection2-L3604-ChIRP_odd.png2025-03-01 05:33 56K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection2-L3605-ChIRP_even.gz2025-03-01 05:06 119K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection2-L3605-ChIRP_even.png2025-03-01 05:33 147K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection2-L3612-Mkay_ChIRP_input_1.gz2025-03-01 05:06 416K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection2-L3612-Mkay_ChIRP_input_1.png2025-03-01 05:34 489K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection2-L3616-PT3_ChIRP_odd.gz2025-03-01 05:06 140K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection2-L3616-PT3_ChIRP_odd.png2025-03-01 05:33 195K 
[   ]signal-around-L3604-L3604-odd-vs-even-outersection2-L3617-PT3_ChIRP_even.gz2025-03-01 05:06 88K 
[IMG]signal-around-L3604-L3604-odd-vs-even-outersection2-L3617-PT3_ChIRP_even.png2025-03-01 05:33 84K 
[   ]signal-around-L3616-L3617-odd-vs-even-intersection1-L3602-ChIRP_P.gz2025-03-01 05:06 7.7K 
[IMG]signal-around-L3616-L3617-odd-vs-even-intersection1-L3602-ChIRP_P.png2025-03-01 05:33 954  
[   ]signal-around-L3616-L3617-odd-vs-even-intersection1-L3603-ChIRP_N.gz2025-03-01 05:06 7.7K 
[IMG]signal-around-L3616-L3617-odd-vs-even-intersection1-L3603-ChIRP_N.png2025-03-01 05:33 1.1K 
[   ]signal-around-L3616-L3617-odd-vs-even-intersection1-L3604-ChIRP_odd.gz2025-03-01 05:13 9.0K 
[IMG]signal-around-L3616-L3617-odd-vs-even-intersection1-L3604-ChIRP_odd.png2025-03-01 05:33 1.8K 
[   ]signal-around-L3616-L3617-odd-vs-even-intersection1-L3605-ChIRP_even.gz2025-03-01 05:06 9.7K 
[IMG]signal-around-L3616-L3617-odd-vs-even-intersection1-L3605-ChIRP_even.png2025-03-01 05:33 2.6K 
[   ]signal-around-L3616-L3617-odd-vs-even-intersection1-L3612-Mkay_ChIRP_input_1.gz2025-03-01 05:06 11K 
[IMG]signal-around-L3616-L3617-odd-vs-even-intersection1-L3612-Mkay_ChIRP_input_1.png2025-03-01 05:33 5.1K 
[   ]signal-around-L3616-L3617-odd-vs-even-intersection1-L3616-PT3_ChIRP_odd.gz2025-03-01 05:06 10K 
[IMG]signal-around-L3616-L3617-odd-vs-even-intersection1-L3616-PT3_ChIRP_odd.png2025-03-01 05:33 3.4K 
[   ]signal-around-L3616-L3617-odd-vs-even-intersection1-L3617-PT3_ChIRP_even.gz2025-03-01 05:06 8.7K 
[IMG]signal-around-L3616-L3617-odd-vs-even-intersection1-L3617-PT3_ChIRP_even.png2025-03-01 05:33 2.2K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection1-L3602-ChIRP_P.gz2025-03-01 05:06 17K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection1-L3602-ChIRP_P.png2025-03-01 05:33 6.6K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection1-L3603-ChIRP_N.gz2025-03-01 05:06 19K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection1-L3603-ChIRP_N.png2025-03-01 05:33 8.9K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection1-L3604-ChIRP_odd.gz2025-03-01 05:06 28K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection1-L3604-ChIRP_odd.png2025-03-01 05:33 18K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection1-L3605-ChIRP_even.gz2025-03-01 05:06 38K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection1-L3605-ChIRP_even.png2025-03-01 05:33 41K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection1-L3612-Mkay_ChIRP_input_1.gz2025-03-01 05:06 136K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection1-L3612-Mkay_ChIRP_input_1.png2025-03-01 05:33 161K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection1-L3616-PT3_ChIRP_odd.gz2025-03-01 05:06 71K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection1-L3616-PT3_ChIRP_odd.png2025-03-01 05:33 78K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection1-L3617-PT3_ChIRP_even.gz2025-03-01 05:06 38K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection1-L3617-PT3_ChIRP_even.png2025-03-01 05:33 31K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection2-L3602-ChIRP_P.gz2025-03-01 05:13 5.7K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection2-L3602-ChIRP_P.png2025-03-01 05:33 3.1K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection2-L3603-ChIRP_N.gz2025-03-01 05:06 7.6K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection2-L3603-ChIRP_N.png2025-03-01 05:33 4.4K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection2-L3604-ChIRP_odd.gz2025-03-01 05:13 12K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection2-L3604-ChIRP_odd.png2025-03-01 05:33 9.5K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection2-L3605-ChIRP_even.gz2025-03-01 05:13 14K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection2-L3605-ChIRP_even.png2025-03-01 05:33 18K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection2-L3612-Mkay_ChIRP_input_1.gz2025-03-01 05:13 63K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection2-L3612-Mkay_ChIRP_input_1.png2025-03-01 05:33 76K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection2-L3616-PT3_ChIRP_odd.gz2025-03-01 05:13 22K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection2-L3616-PT3_ChIRP_odd.png2025-03-01 05:33 30K 
[   ]signal-around-L3616-L3617-odd-vs-even-outersection2-L3617-PT3_ChIRP_even.gz2025-03-01 05:13 24K 
[IMG]signal-around-L3616-L3617-odd-vs-even-outersection2-L3617-PT3_ChIRP_even.png2025-03-01 05:33 19K 
[TXT]wigtobigwig-wig-1x36mers.sh2025-02-28 07:21 3.2K 
[TXT]wigtobigwig-wigplusminus-1x36mers.sh2025-02-28 07:21 6.8K 
[   ]z2025-03-01 05:27 8.4K 

Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443