module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed0 0 1 2 2 tabix HCMV-tiling.bed0-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed1 0 1 2 2 tabix HCMV-tiling.bed1-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed10 0 1 2 2 tabix HCMV-tiling.bed10-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed100 0 1 2 2 tabix HCMV-tiling.bed100-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed101 0 1 2 2 tabix HCMV-tiling.bed101-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed102 0 1 2 2 tabix HCMV-tiling.bed102-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed103 0 1 2 2 tabix HCMV-tiling.bed103-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed104 0 1 2 2 tabix HCMV-tiling.bed104-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed105 0 1 2 2 tabix HCMV-tiling.bed105-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed106 0 1 2 2 tabix HCMV-tiling.bed106-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed107 0 1 2 2 tabix HCMV-tiling.bed107-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed108 0 1 2 2 tabix HCMV-tiling.bed108-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed109 0 1 2 2 tabix HCMV-tiling.bed109-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed11 0 1 2 2 tabix HCMV-tiling.bed11-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed110 0 1 2 2 tabix HCMV-tiling.bed110-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed111 0 1 2 2 tabix HCMV-tiling.bed111-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed112 0 1 2 2 tabix HCMV-tiling.bed112-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed113 0 1 2 2 tabix HCMV-tiling.bed113-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed114 0 1 2 2 tabix HCMV-tiling.bed114-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed115 0 1 2 2 tabix HCMV-tiling.bed115-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed116 0 1 2 2 tabix HCMV-tiling.bed116-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed117 0 1 2 2 tabix HCMV-tiling.bed117-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed118 0 1 2 2 tabix HCMV-tiling.bed118-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed119 0 1 2 2 tabix HCMV-tiling.bed119-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed12 0 1 2 2 tabix HCMV-tiling.bed12-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed120 0 1 2 2 tabix HCMV-tiling.bed120-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed121 0 1 2 2 tabix HCMV-tiling.bed121-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed122 0 1 2 2 tabix HCMV-tiling.bed122-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed123 0 1 2 2 tabix HCMV-tiling.bed123-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed124 0 1 2 2 tabix HCMV-tiling.bed124-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed125 0 1 2 2 tabix HCMV-tiling.bed125-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed126 0 1 2 2 tabix HCMV-tiling.bed126-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed127 0 1 2 2 tabix HCMV-tiling.bed127-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed128 0 1 2 2 tabix HCMV-tiling.bed128-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed129 0 1 2 2 tabix HCMV-tiling.bed129-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed13 0 1 2 2 tabix HCMV-tiling.bed13-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed130 0 1 2 2 tabix HCMV-tiling.bed130-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed131 0 1 2 2 tabix HCMV-tiling.bed131-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed132 0 1 2 2 tabix HCMV-tiling.bed132-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed133 0 1 2 2 tabix HCMV-tiling.bed133-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed134 0 1 2 2 tabix HCMV-tiling.bed134-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed135 0 1 2 2 tabix HCMV-tiling.bed135-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed136 0 1 2 2 tabix HCMV-tiling.bed136-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed137 0 1 2 2 tabix HCMV-tiling.bed137-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed138 0 1 2 2 tabix HCMV-tiling.bed138-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed139 0 1 2 2 tabix HCMV-tiling.bed139-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed14 0 1 2 2 tabix HCMV-tiling.bed14-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed140 0 1 2 2 tabix HCMV-tiling.bed140-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed141 0 1 2 2 tabix HCMV-tiling.bed141-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed142 0 1 2 2 tabix HCMV-tiling.bed142-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed143 0 1 2 2 tabix HCMV-tiling.bed143-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed144 0 1 2 2 tabix HCMV-tiling.bed144-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed145 0 1 2 2 tabix HCMV-tiling.bed145-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed146 0 1 2 2 tabix HCMV-tiling.bed146-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed147 0 1 2 2 tabix HCMV-tiling.bed147-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed148 0 1 2 2 tabix HCMV-tiling.bed148-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed149 0 1 2 2 tabix HCMV-tiling.bed149-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed15 0 1 2 2 tabix HCMV-tiling.bed15-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed150 0 1 2 2 tabix HCMV-tiling.bed150-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed151 0 1 2 2 tabix HCMV-tiling.bed151-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed152 0 1 2 2 tabix HCMV-tiling.bed152-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed153 0 1 2 2 tabix HCMV-tiling.bed153-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed154 0 1 2 2 tabix HCMV-tiling.bed154-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed155 0 1 2 2 tabix HCMV-tiling.bed155-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed156 0 1 2 2 tabix HCMV-tiling.bed156-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed157 0 1 2 2 tabix HCMV-tiling.bed157-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed158 0 1 2 2 tabix HCMV-tiling.bed158-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed159 0 1 2 2 tabix HCMV-tiling.bed159-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed16 0 1 2 2 tabix HCMV-tiling.bed16-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed160 0 1 2 2 tabix HCMV-tiling.bed160-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed161 0 1 2 2 tabix HCMV-tiling.bed161-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed162 0 1 2 2 tabix HCMV-tiling.bed162-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed163 0 1 2 2 tabix HCMV-tiling.bed163-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed164 0 1 2 2 tabix HCMV-tiling.bed164-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed165 0 1 2 2 tabix HCMV-tiling.bed165-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed166 0 1 2 2 tabix HCMV-tiling.bed166-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed167 0 1 2 2 tabix HCMV-tiling.bed167-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed168 0 1 2 2 tabix HCMV-tiling.bed168-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed169 0 1 2 2 tabix HCMV-tiling.bed169-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed17 0 1 2 2 tabix HCMV-tiling.bed17-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed170 0 1 2 2 tabix HCMV-tiling.bed170-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed171 0 1 2 2 tabix HCMV-tiling.bed171-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed172 0 1 2 2 tabix HCMV-tiling.bed172-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed173 0 1 2 2 tabix HCMV-tiling.bed173-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed174 0 1 2 2 tabix HCMV-tiling.bed174-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed175 0 1 2 2 tabix HCMV-tiling.bed175-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed176 0 1 2 2 tabix HCMV-tiling.bed176-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed177 0 1 2 2 tabix HCMV-tiling.bed177-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed178 0 1 2 2 tabix HCMV-tiling.bed178-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed179 0 1 2 2 tabix HCMV-tiling.bed179-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed18 0 1 2 2 tabix HCMV-tiling.bed18-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed180 0 1 2 2 tabix HCMV-tiling.bed180-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed181 0 1 2 2 tabix HCMV-tiling.bed181-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed182 0 1 2 2 tabix HCMV-tiling.bed182-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed183 0 1 2 2 tabix HCMV-tiling.bed183-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed184 0 1 2 2 tabix HCMV-tiling.bed184-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed185 0 1 2 2 tabix HCMV-tiling.bed185-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed186 0 1 2 2 tabix HCMV-tiling.bed186-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed187 0 1 2 2 tabix HCMV-tiling.bed187-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed188 0 1 2 2 tabix HCMV-tiling.bed188-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed189 0 1 2 2 tabix HCMV-tiling.bed189-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed19 0 1 2 2 tabix HCMV-tiling.bed19-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed190 0 1 2 2 tabix HCMV-tiling.bed190-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed191 0 1 2 2 tabix HCMV-tiling.bed191-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed192 0 1 2 2 tabix HCMV-tiling.bed192-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed193 0 1 2 2 tabix HCMV-tiling.bed193-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed194 0 1 2 2 tabix HCMV-tiling.bed194-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed195 0 1 2 2 tabix HCMV-tiling.bed195-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed196 0 1 2 2 tabix HCMV-tiling.bed196-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed197 0 1 2 2 tabix HCMV-tiling.bed197-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed198 0 1 2 2 tabix HCMV-tiling.bed198-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed199 0 1 2 2 tabix HCMV-tiling.bed199-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed2 0 1 2 2 tabix HCMV-tiling.bed2-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed20 0 1 2 2 tabix HCMV-tiling.bed20-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed200 0 1 2 2 tabix HCMV-tiling.bed200-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed201 0 1 2 2 tabix HCMV-tiling.bed201-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed202 0 1 2 2 tabix HCMV-tiling.bed202-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed203 0 1 2 2 tabix HCMV-tiling.bed203-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed204 0 1 2 2 tabix HCMV-tiling.bed204-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed205 0 1 2 2 tabix HCMV-tiling.bed205-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed206 0 1 2 2 tabix HCMV-tiling.bed206-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed207 0 1 2 2 tabix HCMV-tiling.bed207-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed208 0 1 2 2 tabix HCMV-tiling.bed208-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed209 0 1 2 2 tabix HCMV-tiling.bed209-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed21 0 1 2 2 tabix HCMV-tiling.bed21-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed210 0 1 2 2 tabix HCMV-tiling.bed210-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed211 0 1 2 2 tabix HCMV-tiling.bed211-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed212 0 1 2 2 tabix HCMV-tiling.bed212-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed213 0 1 2 2 tabix HCMV-tiling.bed213-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed214 0 1 2 2 tabix HCMV-tiling.bed214-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed215 0 1 2 2 tabix HCMV-tiling.bed215-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed216 0 1 2 2 tabix HCMV-tiling.bed216-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed217 0 1 2 2 tabix HCMV-tiling.bed217-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed218 0 1 2 2 tabix HCMV-tiling.bed218-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed219 0 1 2 2 tabix HCMV-tiling.bed219-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed22 0 1 2 2 tabix HCMV-tiling.bed22-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed220 0 1 2 2 tabix HCMV-tiling.bed220-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed221 0 1 2 2 tabix HCMV-tiling.bed221-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed222 0 1 2 2 tabix HCMV-tiling.bed222-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed223 0 1 2 2 tabix HCMV-tiling.bed223-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed224 0 1 2 2 tabix HCMV-tiling.bed224-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed225 0 1 2 2 tabix HCMV-tiling.bed225-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed226 0 1 2 2 tabix HCMV-tiling.bed226-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed227 0 1 2 2 tabix HCMV-tiling.bed227-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed228 0 1 2 2 tabix HCMV-tiling.bed228-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed229 0 1 2 2 tabix HCMV-tiling.bed229-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed23 0 1 2 2 tabix HCMV-tiling.bed23-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed230 0 1 2 2 tabix HCMV-tiling.bed230-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed231 0 1 2 2 tabix HCMV-tiling.bed231-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed232 0 1 2 2 tabix HCMV-tiling.bed232-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed233 0 1 2 2 tabix HCMV-tiling.bed233-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed234 0 1 2 2 tabix HCMV-tiling.bed234-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed235 0 1 2 2 tabix HCMV-tiling.bed235-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed236 0 1 2 2 tabix HCMV-tiling.bed236-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed24 0 1 2 2 tabix HCMV-tiling.bed24-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed25 0 1 2 2 tabix HCMV-tiling.bed25-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed26 0 1 2 2 tabix HCMV-tiling.bed26-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed27 0 1 2 2 tabix HCMV-tiling.bed27-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed28 0 1 2 2 tabix HCMV-tiling.bed28-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed29 0 1 2 2 tabix HCMV-tiling.bed29-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed3 0 1 2 2 tabix HCMV-tiling.bed3-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed30 0 1 2 2 tabix HCMV-tiling.bed30-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed31 0 1 2 2 tabix HCMV-tiling.bed31-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed32 0 1 2 2 tabix HCMV-tiling.bed32-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed33 0 1 2 2 tabix HCMV-tiling.bed33-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed34 0 1 2 2 tabix HCMV-tiling.bed34-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed35 0 1 2 2 tabix HCMV-tiling.bed35-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed36 0 1 2 2 tabix HCMV-tiling.bed36-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed37 0 1 2 2 tabix HCMV-tiling.bed37-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed38 0 1 2 2 tabix HCMV-tiling.bed38-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed39 0 1 2 2 tabix HCMV-tiling.bed39-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed4 0 1 2 2 tabix HCMV-tiling.bed4-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed40 0 1 2 2 tabix HCMV-tiling.bed40-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed41 0 1 2 2 tabix HCMV-tiling.bed41-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed42 0 1 2 2 tabix HCMV-tiling.bed42-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed43 0 1 2 2 tabix HCMV-tiling.bed43-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed44 0 1 2 2 tabix HCMV-tiling.bed44-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed45 0 1 2 2 tabix HCMV-tiling.bed45-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed46 0 1 2 2 tabix HCMV-tiling.bed46-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed47 0 1 2 2 tabix HCMV-tiling.bed47-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed48 0 1 2 2 tabix HCMV-tiling.bed48-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed49 0 1 2 2 tabix HCMV-tiling.bed49-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed5 0 1 2 2 tabix HCMV-tiling.bed5-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed50 0 1 2 2 tabix HCMV-tiling.bed50-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed51 0 1 2 2 tabix HCMV-tiling.bed51-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed52 0 1 2 2 tabix HCMV-tiling.bed52-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed53 0 1 2 2 tabix HCMV-tiling.bed53-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed54 0 1 2 2 tabix HCMV-tiling.bed54-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed55 0 1 2 2 tabix HCMV-tiling.bed55-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed56 0 1 2 2 tabix HCMV-tiling.bed56-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed57 0 1 2 2 tabix HCMV-tiling.bed57-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed58 0 1 2 2 tabix HCMV-tiling.bed58-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed59 0 1 2 2 tabix HCMV-tiling.bed59-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed6 0 1 2 2 tabix HCMV-tiling.bed6-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed60 0 1 2 2 tabix HCMV-tiling.bed60-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed61 0 1 2 2 tabix HCMV-tiling.bed61-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed62 0 1 2 2 tabix HCMV-tiling.bed62-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed63 0 1 2 2 tabix HCMV-tiling.bed63-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed64 0 1 2 2 tabix HCMV-tiling.bed64-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed65 0 1 2 2 tabix HCMV-tiling.bed65-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed66 0 1 2 2 tabix HCMV-tiling.bed66-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed67 0 1 2 2 tabix HCMV-tiling.bed67-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed68 0 1 2 2 tabix HCMV-tiling.bed68-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed69 0 1 2 2 tabix HCMV-tiling.bed69-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed7 0 1 2 2 tabix HCMV-tiling.bed7-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed70 0 1 2 2 tabix HCMV-tiling.bed70-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed71 0 1 2 2 tabix HCMV-tiling.bed71-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed72 0 1 2 2 tabix HCMV-tiling.bed72-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed73 0 1 2 2 tabix HCMV-tiling.bed73-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed74 0 1 2 2 tabix HCMV-tiling.bed74-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed75 0 1 2 2 tabix HCMV-tiling.bed75-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed76 0 1 2 2 tabix HCMV-tiling.bed76-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed77 0 1 2 2 tabix HCMV-tiling.bed77-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed78 0 1 2 2 tabix HCMV-tiling.bed78-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed79 0 1 2 2 tabix HCMV-tiling.bed79-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed8 0 1 2 2 tabix HCMV-tiling.bed8-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed80 0 1 2 2 tabix HCMV-tiling.bed80-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed81 0 1 2 2 tabix HCMV-tiling.bed81-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed82 0 1 2 2 tabix HCMV-tiling.bed82-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed83 0 1 2 2 tabix HCMV-tiling.bed83-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed84 0 1 2 2 tabix HCMV-tiling.bed84-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed85 0 1 2 2 tabix HCMV-tiling.bed85-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed86 0 1 2 2 tabix HCMV-tiling.bed86-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed87 0 1 2 2 tabix HCMV-tiling.bed87-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed88 0 1 2 2 tabix HCMV-tiling.bed88-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed89 0 1 2 2 tabix HCMV-tiling.bed89-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed9 0 1 2 2 tabix HCMV-tiling.bed9-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed90 0 1 2 2 tabix HCMV-tiling.bed90-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed91 0 1 2 2 tabix HCMV-tiling.bed91-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed92 0 1 2 2 tabix HCMV-tiling.bed92-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed93 0 1 2 2 tabix HCMV-tiling.bed93-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed94 0 1 2 2 tabix HCMV-tiling.bed94-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed95 0 1 2 2 tabix HCMV-tiling.bed95-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed96 0 1 2 2 tabix HCMV-tiling.bed96-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed97 0 1 2 2 tabix HCMV-tiling.bed97-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed98 0 1 2 2 tabix HCMV-tiling.bed98-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &
module load viz; module load py-matplotlib/2.2.2_py27; module load py-scipy/1.1.0_py27; module load R/4.0.2; python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/SMAC-footprints-from-methylation-reads-tsv-tabix-kmeans.py 2025-02-06-HCMV-MinION.dorado-calls.minimap.HCMV-merlin.reads.tsv.bgz HCMV-tiling.bed99 0 1 2 2 tabix HCMV-tiling.bed99-binary-flipped -minCov 1 -scatterPlot binary -0.25 1 none -resize 10 -unstranded -data01 flip -deleteMatrix &