zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ARID3A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARID3A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ARNT\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ARNT.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ASH2L\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ASH2L.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ATF2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ATF3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ATF7\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ATF7.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'BACH1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BACH1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'BATF\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BATF.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'BCL11A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL11A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'BCL3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCL3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'BCLAF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BCLAF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'BHLHE40\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BHLHE40.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'BMI1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BMI1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'BRCA1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.BRCA1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CBFB\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBFB.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CBX3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBX3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CBX5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CBX5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CEBPB\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPB.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CEBPZ\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CEBPZ.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CHD1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CHD1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CHD2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CHD2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CHD4\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CHD4.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CREB1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREB1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CREM\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CREM.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CTCF\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CTCF.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'CUX1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.CUX1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'DPF2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.DPF2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'E2F4\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F4.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'E2F8\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E2F8.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'E4F1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.E4F1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'EBF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EBF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'EED\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EED.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'EGR1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EGR1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ELF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ELK1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ELK1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'EP300\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EP300.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ESRRA\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ESRRA.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ETS1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETS1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ETV6\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ETV6.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'EZH2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.EZH2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'FOS\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOS.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'FOXK2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXK2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'FOXM1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.FOXM1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'GABPA\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GABPA.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'GATAD2B\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.GATAD2B.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'HCFC1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HCFC1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'HDAC2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HDAC2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'HDAC6\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HDAC6.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'HDGF\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HDGF.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'HSF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.HSF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'IKZF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'IKZF2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IKZF2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'IRF3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'IRF4\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF4.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'IRF5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.IRF5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'JUNB\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUNB.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'JUND\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.JUND.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'KAT2A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KAT2A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'KDM1A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KDM1A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'KDM5A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KDM5A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'KLF5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.KLF5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'LARP7\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.LARP7.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MAFK\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAFK.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MAX\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAX.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MAZ\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MAZ.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MEF2A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MEF2B\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2B.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MEF2C\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MEF2C.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MLLT1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MLLT1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MTA2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MTA3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MTA3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MXI1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MXI1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MYB\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYB.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'MYC\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.MYC.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NBN\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NBN.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NFATC1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NFATC3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFATC3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NFE2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFE2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NFIC\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFIC.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NFXL1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFXL1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NFYA\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYA.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NFYB\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NFYB.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NKRF\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NKRF.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NR2C1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NR2C2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2C2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NR2F1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NR2F1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'NRF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.NRF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'PAX5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'PAX8\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PAX8.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'PBX3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PBX3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'PKNOX1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PKNOX1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'PML\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PML.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'POLR2A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POLR2A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'POLR2AphosphoS2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POLR2AphosphoS2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'POLR2AphosphoS5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POLR2AphosphoS5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'POLR3G\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POLR3G.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'POU2F2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.POU2F2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'PRDM15\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.PRDM15.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RAD21\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RAD21.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RAD51\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RAD51.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RB1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RB1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RBBP5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RBBP5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RCOR1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RCOR1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RELA\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELA.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RELB\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RELB.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'REST\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.REST.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RFX5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RFX5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RUNX3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RUNX3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'RXRA\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.RXRA.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SIN3A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIN3A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SIX5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SIX5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SKIL\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SKIL.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SMAD1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SMAD5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMAD5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SMARCA5\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMARCA5.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SMC3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SMC3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SP1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SP1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SPI1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SPI1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SREBF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SREBF2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SREBF2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SRF\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SRF.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'STAT1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'STAT3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'STAT5A\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.STAT5A.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SUPT20H\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SUPT20H.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'SUZ12\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.SUZ12.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TAF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TAF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TARDBP\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TARDBP.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TBL1XR1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBL1XR1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TBP\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBP.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TBX21\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TBX21.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TCF12\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF12.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TCF3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF3.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TCF7\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TCF7.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'TRIM22\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.TRIM22.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'UBTF\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.UBTF.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'USF1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'USF2\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.USF2.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'WRNIP1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.WRNIP1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'YBX1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YBX1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'YY1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.YY1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZBED1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBED1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZBTB11\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB11.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZBTB33\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB33.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZBTB4\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB4.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZBTB40\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZBTB40.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZEB1\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZEB1.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZFP36\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZFP36.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZNF207\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF207.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZNF217\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF217.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZNF24\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF24.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZNF274\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF274.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZNF384\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF384.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZNF592\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF592.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZNF622\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF622.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZNF687\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZNF687.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZSCAN29\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZSCAN29.gz
zcat /oak/stanford/groups/akundaje/marinovg/motifs/FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.bgz | grep -P 'ZZZ3\t' | gzip > FIMO-CIS-BP-Homo_sapiens.hg20.fimo.txt.annotated.ZZZ3.gz