tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_0/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_0-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_0-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_100/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_100-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_100-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_101/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_101-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_101-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_102/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_102-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_102-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_103/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_103-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_103-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_104/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_104-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_104-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_105/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_105-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_105-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_106/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_106-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_106-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_107/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_107-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_107-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_108/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_108-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_108-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_109/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_109-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_109-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_10/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_10-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_10-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_110/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_110-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_110-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_111/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_111-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_111-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_112/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_112-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_112-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_113/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_113-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_113-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_114/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_114-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_114-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_115/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_115-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_115-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_116/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_116-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_116-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_117/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_117-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_117-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_118/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_118-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_118-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_119/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_119-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_119-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_11/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_11-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_11-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_120/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_120-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_120-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_121/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_121-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_121-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_122/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_122-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_122-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_123/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_123-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_123-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_124/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_124-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_124-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_125/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_125-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_125-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_126/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_126-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_126-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_127/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_127-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_127-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_128/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_128-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_128-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_129/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_129-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_129-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_12/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_12-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_12-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_130/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_130-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_130-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_131/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_131-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_131-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_132/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_132-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_132-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_133/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_133-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_133-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_134/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_134-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_134-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_135/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_135-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_135-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_136/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_136-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_136-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_137/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_137-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_137-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_138/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_138-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_138-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_139/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_139-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_139-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_13/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_13-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_13-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_140/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_140-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_140-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_141/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_141-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_141-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_142/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_142-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_142-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_143/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_143-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_143-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_144/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_144-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_144-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_145/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_145-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_145-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_146/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_146-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_146-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_147/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_147-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_147-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_148/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_148-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_148-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_149/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_149-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_149-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_14/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_14-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_14-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_150/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_150-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_150-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_151/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_151-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_151-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_152/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_152-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_152-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_153/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_153-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_153-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_154/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_154-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_154-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_155/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_155-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_155-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_156/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_156-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_156-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_157/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_157-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_157-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_158/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_158-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_158-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_159/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_159-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_159-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_15/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_15-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_15-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_160/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_160-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_160-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_161/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_161-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_161-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_162/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_162-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_162-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_163/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_163-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_163-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_164/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_164-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_164-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_165/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_165-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_165-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_166/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_166-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_166-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_167/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_167-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_167-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_168/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_168-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_168-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_169/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_169-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_169-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_16/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_16-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_16-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_170/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_170-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_170-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_171/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_171-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_171-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_172/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_172-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_172-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_173/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_173-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_173-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_174/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_174-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_174-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_175/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_175-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_175-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_176/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_176-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_176-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_177/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_177-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_177-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_178/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_178-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_178-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_179/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_179-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_179-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_17/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_17-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_17-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_180/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_180-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_180-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_181/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_181-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_181-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_182/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_182-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_182-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_183/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_183-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_183-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_184/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_184-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_184-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_185/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_185-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_185-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_186/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_186-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_186-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_187/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_187-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_187-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_188/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_188-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_188-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_189/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_189-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_189-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_18/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_18-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_18-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_190/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_190-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_190-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_191/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_191-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_191-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_192/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_192-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_192-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_193/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_193-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_193-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_194/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_194-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_194-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_195/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_195-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_195-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_196/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_196-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_196-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_197/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_197-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_197-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_198/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_198-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_198-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_199/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_199-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_199-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_19/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_19-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_19-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_1/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_1-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_1-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_200/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_200-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_200-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_201/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_201-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_201-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_202/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_202-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_202-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_203/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_203-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_203-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_204/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_204-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_204-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_205/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_205-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_205-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_206/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_206-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_206-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_207/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_207-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_207-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_208/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_208-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_208-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_209/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_209-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_209-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_20/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_20-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_20-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_210/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_210-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_210-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_211/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_211-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_211-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_212/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_212-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_212-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_213/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_213-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_213-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_214/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_214-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_214-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_215/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_215-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_215-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_216/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_216-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_216-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_217/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_217-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_217-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_218/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_218-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_218-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_219/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_219-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_219-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_21/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_21-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_21-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_220/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_220-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_220-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_221/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_221-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_221-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_222/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_222-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_222-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_223/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_223-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_223-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_224/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_224-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_224-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_225/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_225-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_225-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_226/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_226-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_226-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_227/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_227-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_227-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_228/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_228-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_228-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_229/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_229-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_229-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_22/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_22-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_22-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_230/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_230-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_230-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_231/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_231-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_231-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_232/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_232-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_232-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_233/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_233-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_233-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_234/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_234-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_234-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_235/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_235-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_235-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_236/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_236-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_236-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_237/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_237-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_237-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_238/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_238-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_238-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_239/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_239-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_239-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_23/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_23-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_23-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_240/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_240-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_240-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_241/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_241-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_241-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_242/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_242-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_242-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_243/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_243-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_243-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_244/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_244-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_244-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_245/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_245-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_245-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_246/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_246-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_246-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_247/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_247-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_247-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_248/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_248-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_248-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_249/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_249-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_249-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_24/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_24-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_24-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_250/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_250-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_250-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_251/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_251-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_251-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_252/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_252-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_252-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_253/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_253-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_253-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_254/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_254-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_254-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_255/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_255-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_255-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_256/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_256-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_256-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_257/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_257-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_257-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_258/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_258-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_258-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_259/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_259-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_259-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_25/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_25-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_25-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_260/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_260-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_260-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_261/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_261-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_261-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_262/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_262-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_262-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_263/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_263-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_263-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_264/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_264-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_264-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_265/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_265-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_265-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_266/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_266-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_266-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_267/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_267-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_267-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_268/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_268-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_268-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_269/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_269-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_269-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_26/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_26-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_26-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_270/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_270-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_270-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_271/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_271-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_271-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_272/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_272-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_272-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_273/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_273-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_273-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_274/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_274-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_274-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_275/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_275-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_275-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_276/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_276-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_276-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_277/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_277-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_277-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_278/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_278-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_278-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_279/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_279-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_279-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_27/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_27-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_27-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_280/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_280-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_280-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_281/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_281-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_281-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_282/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_282-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_282-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_283/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_283-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_283-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_284/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_284-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_284-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_285/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_285-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_285-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_286/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_286-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_286-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_287/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_287-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_287-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_288/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_288-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_288-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_289/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_289-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_289-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_28/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_28-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_28-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_290/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_290-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_290-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_291/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_291-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_291-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_292/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_292-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_292-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_293/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_293-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_293-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_294/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_294-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_294-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_295/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_295-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_295-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_296/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_296-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_296-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_297/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_297-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_297-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_298/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_298-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_298-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_299/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_299-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_299-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_29/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_29-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_29-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_2/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_2-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_2-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_300/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_300-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_300-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_301/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_301-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_301-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_302/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_302-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_302-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_303/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_303-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_303-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_304/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_304-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_304-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_305/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_305-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_305-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_306/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_306-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_306-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_307/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_307-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_307-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_308/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_308-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_308-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_309/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_309-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_309-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_30/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_30-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_30-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_310/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_310-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_310-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_311/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_311-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_311-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_312/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_312-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_312-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_313/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_313-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_313-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_314/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_314-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_314-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_315/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_315-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_315-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_316/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_316-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_316-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_317/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_317-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_317-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_318/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_318-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_318-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_319/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_319-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_319-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_31/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_31-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_31-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_320/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_320-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_320-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_321/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_321-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_321-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_322/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_322-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_322-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_323/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_323-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_323-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_324/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_324-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_324-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_325/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_325-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_325-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_326/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_326-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_326-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_327/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_327-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_327-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_328/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_328-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_328-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_329/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_329-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_329-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_32/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_32-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_32-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_330/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_330-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_330-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_331/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_331-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_331-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_332/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_332-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_332-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_333/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_333-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_333-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_334/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_334-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_334-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_335/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_335-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_335-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_336/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_336-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_336-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_337/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_337-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_337-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_338/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_338-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_338-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_339/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_339-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_339-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_33/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_33-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_33-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_340/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_340-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_340-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_341/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_341-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_341-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_342/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_342-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_342-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_343/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_343-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_343-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_344/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_344-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_344-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_345/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_345-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_345-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_346/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_346-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_346-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_347/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_347-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_347-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_348/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_348-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_348-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_349/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_349-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_349-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_34/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_34-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_34-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_350/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_350-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_350-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_351/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_351-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_351-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_352/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_352-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_352-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_353/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_353-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_353-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_354/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_354-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_354-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_355/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_355-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_355-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_356/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_356-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_356-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_357/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_357-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_357-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_358/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_358-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_358-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_359/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_359-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_359-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_35/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_35-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_35-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_360/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_360-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_360-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_361/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_361-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_361-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_362/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_362-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_362-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_363/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_363-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_363-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_364/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_364-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_364-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_365/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_365-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_365-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_366/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_366-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_366-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_367/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_367-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_367-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_368/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_368-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_368-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_369/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_369-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_369-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_36/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_36-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_36-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_370/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_370-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_370-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_371/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_371-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_371-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_372/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_372-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_372-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_373/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_373-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_373-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_374/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_374-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_374-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_375/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_375-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_375-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_376/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_376-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_376-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_377/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_377-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_377-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_378/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_378-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_378-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_379/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_379-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_379-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_37/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_37-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_37-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_380/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_380-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_380-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_381/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_381-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_381-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_382/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_382-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_382-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_383/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_383-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_383-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_384/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_384-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_384-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_385/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_385-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_385-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_386/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_386-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_386-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_387/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_387-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_387-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_388/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_388-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_388-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_389/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_389-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_389-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_38/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_38-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_38-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_390/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_390-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_390-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_391/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_391-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_391-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_392/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_392-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_392-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_393/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_393-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_393-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_394/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_394-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_394-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_395/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_395-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_395-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_396/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_396-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_396-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_397/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_397-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_397-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_398/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_398-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_398-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_399/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_399-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_399-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_39/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_39-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_39-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_3/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_3-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_3-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_400/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_400-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_400-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_401/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_401-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_401-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_402/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_402-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_402-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_403/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_403-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_403-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_404/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_404-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_404-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_405/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_405-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_405-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_406/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_406-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_406-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_407/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_407-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_407-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_408/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_408-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_408-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_409/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_409-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_409-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_40/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_40-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_40-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_410/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_410-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_410-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_411/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_411-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_411-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_412/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_412-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_412-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_413/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_413-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_413-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_414/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_414-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_414-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_415/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_415-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_415-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_416/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_416-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_416-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_417/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_417-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_417-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_418/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_418-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_418-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_419/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_419-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_419-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_41/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_41-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_41-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_420/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_420-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_420-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_421/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_421-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_421-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_422/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_422-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_422-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_423/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_423-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_423-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_424/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_424-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_424-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_425/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_425-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_425-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_426/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_426-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_426-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_427/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_427-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_427-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_428/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_428-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_428-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_429/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_429-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_429-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_42/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_42-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_42-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_430/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_430-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_430-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_431/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_431-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_431-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_432/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_432-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_432-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_433/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_433-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_433-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_434/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_434-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_434-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_435/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_435-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_435-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_436/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_436-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_436-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_437/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_437-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_437-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_438/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_438-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_438-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_439/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_439-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_439-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_43/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_43-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_43-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_440/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_440-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_440-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_441/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_441-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_441-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_442/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_442-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_442-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_44/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_44-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_44-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_45/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_45-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_45-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_46/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_46-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_46-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_47/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_47-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_47-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_48/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_48-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_48-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_49/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_49-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_49-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_4/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_4-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_4-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_50/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_50-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_50-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_51/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_51-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_51-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_52/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_52-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_52-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_53/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_53-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_53-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_54/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_54-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_54-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_55/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_55-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_55-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_56/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_56-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_56-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_57/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_57-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_57-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_58/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_58-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_58-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_59/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_59-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_59-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_5/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_5-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_5-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_60/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_60-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_60-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_61/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_61-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_61-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_62/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_62-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_62-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_63/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_63-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_63-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_64/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_64-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_64-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_65/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_65-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_65-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_66/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_66-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_66-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_67/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_67-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_67-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_68/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_68-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_68-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_69/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_69-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_69-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_6/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_6-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_6-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_70/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_70-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_70-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_71/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_71-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_71-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_72/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_72-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_72-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_73/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_73-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_73-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_74/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_74-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_74-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_75/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_75-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_75-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_76/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_76-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_76-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_77/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_77-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_77-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_78/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_78-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_78-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_79/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_79-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_79-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_7/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_7-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_7-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_80/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_80-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_80-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_81/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_81-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_81-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_82/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_82-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_82-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_83/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_83-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_83-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_84/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_84-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_84-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_85/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_85-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_85-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_86/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_86-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_86-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_87/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_87-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_87-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_88/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_88-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_88-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_89/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_89-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_89-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_8/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_8-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_8-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_90/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_90-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_90-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_91/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_91-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_91-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_92/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_92-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_92-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_93/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_93-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_93-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_94/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_94-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_94-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAQ23700_af0b38d4_9/0 --fastq-filenames single_fast5-output-FAQ23700_af0b38d4_9-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAQ23700_af0b38d4_9-guppy/sequencing_summary.txt