python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_0-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_0.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_10-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_10.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_11-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_11.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_12-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_12.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_13-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_13.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_14-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_14.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_15-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_15.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_16-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_16.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_17-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_17.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_18-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_18.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_19-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_19.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_1-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_1.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_20-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_20.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_21-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_21.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_22-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_22.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_23-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_23.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_24-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_24.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_25-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_25.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_26-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_26.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_27-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_27.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_28-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_28.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_2-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_2.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_3-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_3.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_4-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_4.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_5-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_5.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_6-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_6.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_7-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_7.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_8-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_8.alt_m6A-only -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK93201_74cd2ea4_9-guppy/tombo.mods.per_read.alternative.6mA.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK93201_74cd2ea4_9.alt_m6A-only -m6A-only -excludeContext CG 1 &