tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_0/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_0-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_0-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_100/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_100-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_100-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_101/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_101-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_101-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_102/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_102-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_102-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_103/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_103-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_103-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_104/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_104-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_104-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_105/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_105-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_105-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_106/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_106-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_106-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_107/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_107-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_107-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_108/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_108-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_108-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_109/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_109-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_109-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_10/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_10-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_10-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_110/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_110-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_110-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_111/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_111-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_111-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_112/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_112-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_112-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_113/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_113-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_113-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_114/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_114-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_114-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_115/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_115-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_115-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_116/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_116-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_116-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_117/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_117-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_117-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_118/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_118-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_118-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_119/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_119-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_119-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_11/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_11-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_11-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_120/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_120-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_120-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_121/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_121-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_121-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_122/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_122-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_122-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_123/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_123-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_123-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_124/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_124-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_124-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_125/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_125-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_125-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_126/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_126-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_126-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_127/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_127-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_127-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_128/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_128-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_128-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_129/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_129-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_129-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_12/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_12-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_12-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_130/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_130-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_130-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_131/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_131-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_131-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_132/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_132-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_132-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_133/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_133-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_133-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_134/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_134-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_134-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_135/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_135-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_135-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_136/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_136-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_136-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_137/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_137-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_137-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_138/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_138-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_138-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_139/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_139-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_139-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_13/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_13-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_13-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_140/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_140-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_140-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_141/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_141-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_141-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_142/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_142-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_142-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_143/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_143-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_143-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_144/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_144-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_144-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_145/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_145-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_145-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_146/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_146-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_146-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_147/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_147-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_147-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_148/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_148-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_148-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_149/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_149-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_149-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_14/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_14-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_14-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_150/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_150-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_150-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_151/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_151-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_151-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_152/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_152-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_152-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_153/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_153-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_153-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_154/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_154-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_154-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_155/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_155-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_155-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_156/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_156-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_156-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_157/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_157-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_157-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_158/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_158-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_158-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_159/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_159-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_159-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_15/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_15-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_15-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_160/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_160-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_160-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_161/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_161-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_161-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_162/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_162-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_162-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_163/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_163-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_163-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_164/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_164-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_164-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_165/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_165-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_165-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_166/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_166-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_166-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_167/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_167-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_167-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_168/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_168-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_168-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_169/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_169-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_169-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_16/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_16-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_16-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_170/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_170-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_170-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_171/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_171-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_171-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_172/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_172-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_172-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_173/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_173-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_173-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_174/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_174-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_174-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_175/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_175-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_175-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_176/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_176-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_176-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_177/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_177-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_177-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_178/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_178-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_178-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_179/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_179-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_179-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_17/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_17-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_17-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_180/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_180-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_180-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_181/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_181-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_181-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_182/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_182-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_182-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_183/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_183-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_183-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_184/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_184-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_184-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_185/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_185-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_185-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_186/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_186-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_186-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_187/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_187-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_187-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_188/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_188-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_188-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_189/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_189-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_189-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_18/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_18-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_18-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_190/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_190-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_190-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_191/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_191-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_191-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_192/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_192-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_192-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_193/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_193-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_193-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_194/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_194-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_194-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_195/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_195-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_195-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_196/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_196-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_196-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_197/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_197-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_197-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_198/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_198-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_198-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_199/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_199-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_199-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_19/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_19-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_19-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_1/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_1-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_1-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_200/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_200-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_200-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_201/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_201-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_201-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_202/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_202-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_202-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_203/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_203-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_203-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_204/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_204-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_204-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_205/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_205-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_205-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_206/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_206-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_206-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_207/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_207-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_207-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_208/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_208-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_208-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_209/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_209-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_209-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_20/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_20-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_20-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_210/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_210-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_210-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_211/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_211-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_211-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_212/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_212-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_212-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_213/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_213-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_213-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_214/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_214-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_214-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_215/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_215-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_215-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_216/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_216-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_216-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_217/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_217-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_217-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_218/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_218-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_218-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_219/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_219-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_219-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_21/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_21-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_21-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_220/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_220-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_220-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_221/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_221-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_221-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_222/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_222-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_222-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_223/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_223-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_223-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_224/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_224-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_224-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_225/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_225-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_225-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_226/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_226-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_226-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_227/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_227-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_227-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_228/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_228-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_228-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_229/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_229-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_229-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_22/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_22-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_22-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_230/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_230-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_230-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_231/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_231-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_231-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_232/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_232-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_232-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_233/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_233-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_233-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_234/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_234-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_234-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_235/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_235-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_235-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_236/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_236-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_236-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_237/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_237-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_237-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_238/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_238-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_238-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_239/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_239-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_239-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_23/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_23-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_23-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_240/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_240-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_240-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_241/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_241-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_241-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_242/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_242-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_242-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_243/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_243-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_243-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_244/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_244-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_244-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_245/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_245-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_245-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_246/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_246-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_246-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_247/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_247-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_247-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_248/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_248-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_248-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_249/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_249-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_249-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_24/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_24-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_24-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_250/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_250-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_250-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_251/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_251-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_251-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_252/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_252-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_252-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_253/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_253-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_253-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_254/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_254-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_254-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_255/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_255-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_255-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_256/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_256-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_256-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_257/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_257-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_257-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_258/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_258-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_258-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_259/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_259-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_259-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_25/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_25-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_25-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_260/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_260-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_260-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_261/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_261-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_261-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_262/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_262-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_262-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_263/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_263-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_263-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_264/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_264-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_264-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_265/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_265-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_265-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_266/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_266-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_266-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_267/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_267-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_267-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_268/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_268-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_268-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_269/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_269-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_269-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_26/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_26-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_26-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_270/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_270-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_270-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_271/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_271-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_271-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_272/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_272-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_272-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_273/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_273-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_273-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_274/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_274-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_274-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_275/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_275-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_275-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_276/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_276-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_276-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_277/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_277-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_277-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_278/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_278-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_278-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_279/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_279-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_279-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_27/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_27-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_27-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_280/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_280-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_280-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_281/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_281-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_281-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_282/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_282-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_282-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_283/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_283-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_283-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_284/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_284-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_284-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_285/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_285-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_285-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_286/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_286-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_286-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_287/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_287-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_287-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_288/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_288-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_288-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_289/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_289-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_289-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_28/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_28-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_28-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_290/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_290-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_290-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_291/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_291-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_291-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_292/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_292-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_292-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_293/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_293-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_293-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_294/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_294-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_294-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_295/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_295-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_295-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_296/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_296-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_296-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_297/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_297-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_297-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_298/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_298-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_298-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_299/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_299-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_299-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_29/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_29-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_29-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_2/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_2-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_2-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_300/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_300-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_300-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_301/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_301-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_301-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_302/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_302-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_302-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_303/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_303-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_303-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_304/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_304-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_304-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_305/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_305-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_305-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_306/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_306-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_306-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_307/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_307-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_307-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_308/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_308-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_308-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_309/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_309-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_309-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_30/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_30-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_30-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_310/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_310-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_310-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_311/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_311-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_311-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_312/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_312-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_312-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_313/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_313-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_313-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_314/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_314-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_314-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_315/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_315-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_315-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_316/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_316-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_316-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_317/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_317-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_317-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_318/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_318-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_318-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_319/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_319-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_319-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_31/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_31-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_31-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_320/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_320-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_320-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_321/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_321-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_321-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_322/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_322-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_322-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_323/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_323-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_323-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_324/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_324-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_324-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_325/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_325-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_325-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_326/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_326-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_326-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_327/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_327-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_327-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_328/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_328-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_328-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_329/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_329-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_329-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_32/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_32-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_32-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_330/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_330-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_330-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_331/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_331-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_331-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_332/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_332-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_332-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_333/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_333-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_333-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_334/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_334-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_334-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_335/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_335-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_335-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_336/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_336-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_336-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_337/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_337-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_337-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_338/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_338-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_338-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_339/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_339-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_339-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_33/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_33-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_33-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_340/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_340-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_340-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_341/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_341-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_341-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_342/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_342-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_342-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_343/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_343-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_343-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_344/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_344-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_344-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_345/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_345-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_345-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_346/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_346-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_346-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_347/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_347-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_347-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_348/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_348-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_348-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_349/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_349-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_349-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_34/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_34-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_34-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_350/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_350-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_350-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_351/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_351-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_351-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_352/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_352-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_352-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_353/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_353-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_353-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_354/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_354-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_354-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_355/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_355-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_355-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_356/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_356-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_356-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_357/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_357-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_357-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_358/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_358-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_358-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_359/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_359-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_359-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_35/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_35-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_35-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_360/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_360-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_360-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_361/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_361-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_361-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_362/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_362-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_362-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_363/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_363-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_363-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_364/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_364-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_364-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_365/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_365-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_365-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_366/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_366-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_366-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_367/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_367-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_367-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_368/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_368-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_368-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_369/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_369-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_369-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_36/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_36-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_36-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_370/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_370-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_370-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_371/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_371-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_371-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_372/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_372-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_372-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_373/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_373-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_373-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_374/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_374-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_374-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_375/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_375-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_375-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_376/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_376-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_376-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_377/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_377-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_377-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_378/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_378-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_378-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_379/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_379-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_379-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_37/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_37-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_37-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_380/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_380-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_380-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_381/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_381-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_381-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_382/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_382-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_382-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_383/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_383-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_383-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_384/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_384-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_384-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_385/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_385-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_385-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_386/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_386-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_386-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_387/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_387-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_387-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_388/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_388-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_388-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_389/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_389-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_389-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_38/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_38-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_38-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_390/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_390-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_390-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_391/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_391-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_391-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_392/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_392-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_392-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_393/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_393-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_393-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_394/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_394-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_394-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_395/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_395-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_395-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_396/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_396-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_396-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_397/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_397-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_397-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_398/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_398-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_398-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_399/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_399-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_399-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_39/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_39-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_39-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_3/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_3-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_3-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_400/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_400-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_400-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_401/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_401-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_401-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_402/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_402-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_402-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_403/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_403-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_403-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_404/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_404-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_404-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_405/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_405-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_405-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_406/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_406-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_406-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_407/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_407-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_407-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_408/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_408-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_408-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_409/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_409-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_409-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_40/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_40-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_40-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_410/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_410-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_410-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_411/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_411-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_411-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_412/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_412-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_412-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_413/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_413-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_413-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_414/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_414-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_414-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_415/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_415-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_415-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_416/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_416-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_416-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_417/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_417-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_417-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_418/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_418-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_418-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_419/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_419-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_419-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_41/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_41-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_41-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_420/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_420-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_420-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_421/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_421-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_421-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_422/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_422-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_422-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_423/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_423-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_423-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_424/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_424-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_424-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_425/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_425-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_425-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_426/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_426-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_426-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_427/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_427-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_427-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_428/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_428-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_428-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_429/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_429-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_429-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_42/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_42-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_42-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_430/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_430-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_430-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_431/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_431-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_431-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_432/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_432-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_432-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_433/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_433-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_433-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_434/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_434-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_434-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_435/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_435-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_435-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_436/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_436-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_436-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_437/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_437-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_437-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_438/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_438-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_438-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_439/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_439-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_439-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_43/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_43-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_43-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_440/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_440-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_440-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_441/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_441-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_441-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_442/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_442-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_442-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_443/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_443-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_443-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_444/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_444-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_444-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_445/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_445-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_445-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_446/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_446-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_446-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_447/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_447-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_447-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_448/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_448-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_448-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_449/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_449-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_449-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_44/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_44-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_44-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_450/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_450-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_450-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_451/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_451-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_451-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_452/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_452-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_452-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_453/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_453-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_453-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_454/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_454-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_454-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_455/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_455-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_455-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_456/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_456-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_456-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_457/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_457-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_457-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_458/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_458-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_458-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_459/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_459-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_459-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_45/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_45-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_45-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_460/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_460-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_460-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_461/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_461-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_461-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_462/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_462-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_462-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_463/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_463-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_463-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_464/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_464-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_464-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_465/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_465-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_465-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_466/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_466-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_466-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_467/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_467-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_467-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_468/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_468-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_468-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_469/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_469-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_469-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_46/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_46-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_46-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_470/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_470-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_470-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_471/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_471-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_471-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_472/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_472-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_472-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_473/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_473-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_473-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_474/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_474-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_474-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_475/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_475-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_475-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_476/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_476-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_476-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_477/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_477-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_477-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_478/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_478-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_478-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_479/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_479-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_479-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_47/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_47-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_47-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_480/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_480-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_480-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_481/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_481-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_481-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_482/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_482-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_482-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_483/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_483-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_483-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_484/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_484-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_484-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_485/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_485-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_485-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_486/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_486-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_486-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_487/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_487-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_487-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_488/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_488-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_488-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_489/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_489-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_489-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_48/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_48-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_48-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_490/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_490-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_490-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_491/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_491-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_491-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_492/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_492-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_492-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_493/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_493-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_493-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_494/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_494-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_494-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_495/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_495-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_495-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_496/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_496-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_496-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_497/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_497-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_497-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_498/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_498-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_498-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_499/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_499-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_499-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_49/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_49-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_49-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_4/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_4-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_4-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_500/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_500-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_500-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_501/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_501-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_501-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_502/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_502-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_502-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_503/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_503-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_503-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_504/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_504-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_504-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_505/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_505-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_505-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_506/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_506-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_506-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_507/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_507-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_507-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_508/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_508-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_508-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_509/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_509-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_509-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_50/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_50-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_50-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_510/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_510-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_510-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_511/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_511-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_511-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_512/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_512-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_512-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_513/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_513-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_513-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_514/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_514-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_514-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_515/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_515-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_515-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_516/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_516-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_516-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_517/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_517-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_517-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_518/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_518-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_518-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_519/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_519-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_519-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_51/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_51-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_51-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_520/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_520-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_520-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_521/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_521-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_521-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_522/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_522-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_522-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_523/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_523-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_523-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_524/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_524-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_524-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_525/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_525-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_525-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_526/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_526-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_526-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_527/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_527-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_527-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_528/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_528-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_528-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_529/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_529-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_529-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_52/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_52-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_52-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_530/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_530-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_530-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_531/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_531-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_531-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_532/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_532-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_532-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_533/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_533-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_533-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_534/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_534-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_534-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_535/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_535-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_535-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_536/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_536-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_536-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_537/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_537-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_537-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_538/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_538-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_538-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_539/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_539-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_539-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_53/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_53-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_53-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_540/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_540-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_540-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_541/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_541-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_541-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_542/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_542-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_542-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_543/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_543-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_543-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_544/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_544-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_544-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_545/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_545-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_545-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_546/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_546-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_546-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_547/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_547-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_547-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_548/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_548-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_548-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_549/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_549-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_549-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_54/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_54-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_54-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_550/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_550-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_550-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_551/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_551-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_551-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_552/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_552-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_552-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_553/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_553-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_553-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_554/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_554-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_554-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_555/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_555-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_555-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_556/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_556-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_556-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_557/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_557-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_557-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_558/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_558-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_558-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_559/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_559-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_559-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_55/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_55-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_55-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_560/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_560-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_560-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_561/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_561-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_561-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_562/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_562-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_562-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_563/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_563-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_563-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_564/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_564-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_564-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_565/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_565-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_565-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_566/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_566-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_566-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_567/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_567-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_567-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_568/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_568-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_568-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_569/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_569-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_569-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_56/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_56-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_56-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_570/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_570-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_570-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_571/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_571-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_571-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_572/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_572-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_572-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_573/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_573-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_573-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_574/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_574-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_574-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_575/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_575-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_575-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_576/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_576-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_576-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_577/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_577-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_577-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_578/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_578-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_578-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_579/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_579-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_579-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_57/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_57-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_57-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_580/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_580-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_580-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_581/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_581-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_581-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_582/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_582-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_582-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_583/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_583-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_583-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_584/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_584-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_584-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_585/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_585-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_585-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_586/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_586-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_586-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_587/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_587-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_587-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_588/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_588-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_588-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_589/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_589-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_589-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_58/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_58-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_58-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_590/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_590-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_590-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_591/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_591-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_591-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_592/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_592-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_592-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_593/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_593-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_593-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_594/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_594-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_594-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_595/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_595-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_595-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_596/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_596-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_596-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_597/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_597-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_597-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_598/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_598-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_598-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_599/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_599-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_599-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_59/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_59-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_59-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_5/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_5-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_5-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_600/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_600-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_600-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_601/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_601-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_601-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_602/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_602-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_602-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_603/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_603-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_603-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_604/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_604-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_604-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_605/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_605-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_605-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_606/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_606-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_606-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_607/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_607-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_607-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_608/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_608-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_608-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_609/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_609-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_609-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_60/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_60-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_60-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_610/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_610-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_610-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_611/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_611-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_611-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_612/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_612-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_612-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_613/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_613-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_613-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_614/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_614-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_614-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_615/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_615-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_615-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_616/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_616-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_616-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_617/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_617-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_617-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_618/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_618-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_618-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_619/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_619-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_619-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_61/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_61-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_61-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_620/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_620-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_620-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_621/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_621-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_621-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_622/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_622-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_622-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_623/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_623-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_623-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_624/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_624-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_624-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_625/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_625-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_625-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_626/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_626-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_626-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_627/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_627-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_627-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_628/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_628-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_628-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_629/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_629-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_629-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_62/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_62-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_62-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_630/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_630-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_630-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_631/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_631-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_631-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_632/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_632-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_632-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_633/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_633-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_633-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_634/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_634-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_634-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_635/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_635-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_635-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_636/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_636-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_636-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_637/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_637-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_637-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_638/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_638-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_638-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_639/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_639-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_639-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_63/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_63-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_63-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_640/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_640-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_640-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_641/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_641-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_641-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_642/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_642-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_642-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_643/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_643-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_643-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_644/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_644-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_644-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_645/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_645-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_645-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_646/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_646-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_646-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_647/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_647-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_647-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_648/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_648-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_648-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_649/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_649-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_649-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_64/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_64-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_64-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_650/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_650-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_650-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_651/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_651-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_651-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_652/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_652-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_652-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_653/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_653-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_653-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_654/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_654-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_654-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_655/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_655-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_655-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_656/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_656-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_656-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_657/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_657-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_657-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_658/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_658-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_658-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_659/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_659-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_659-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_65/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_65-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_65-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_660/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_660-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_660-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_661/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_661-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_661-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_662/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_662-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_662-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_663/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_663-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_663-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_664/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_664-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_664-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_665/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_665-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_665-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_666/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_666-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_666-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_667/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_667-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_667-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_668/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_668-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_668-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_669/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_669-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_669-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_66/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_66-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_66-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_670/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_670-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_670-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_671/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_671-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_671-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_672/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_672-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_672-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_673/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_673-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_673-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_674/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_674-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_674-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_675/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_675-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_675-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_676/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_676-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_676-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_677/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_677-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_677-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_678/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_678-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_678-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_679/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_679-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_679-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_67/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_67-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_67-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_680/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_680-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_680-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_681/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_681-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_681-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_682/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_682-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_682-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_683/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_683-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_683-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_684/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_684-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_684-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_685/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_685-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_685-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_686/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_686-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_686-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_687/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_687-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_687-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_688/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_688-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_688-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_689/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_689-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_689-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_68/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_68-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_68-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_690/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_690-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_690-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_691/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_691-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_691-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_692/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_692-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_692-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_693/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_693-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_693-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_694/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_694-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_694-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_695/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_695-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_695-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_696/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_696-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_696-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_697/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_697-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_697-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_698/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_698-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_698-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_699/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_699-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_699-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_69/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_69-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_69-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_6/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_6-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_6-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_700/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_700-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_700-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_701/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_701-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_701-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_702/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_702-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_702-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_703/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_703-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_703-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_704/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_704-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_704-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_705/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_705-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_705-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_706/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_706-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_706-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_707/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_707-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_707-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_708/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_708-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_708-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_709/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_709-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_709-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_70/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_70-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_70-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_710/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_710-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_710-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_711/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_711-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_711-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_712/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_712-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_712-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_713/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_713-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_713-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_714/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_714-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_714-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_715/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_715-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_715-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_716/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_716-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_716-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_717/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_717-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_717-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_718/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_718-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_718-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_719/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_719-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_719-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_71/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_71-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_71-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_720/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_720-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_720-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_721/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_721-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_721-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_722/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_722-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_722-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_723/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_723-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_723-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_724/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_724-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_724-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_725/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_725-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_725-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_726/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_726-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_726-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_727/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_727-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_727-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_728/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_728-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_728-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_729/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_729-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_729-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_72/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_72-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_72-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_730/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_730-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_730-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_731/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_731-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_731-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_732/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_732-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_732-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_733/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_733-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_733-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_734/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_734-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_734-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_735/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_735-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_735-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_736/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_736-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_736-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_737/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_737-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_737-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_738/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_738-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_738-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_739/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_739-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_739-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_73/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_73-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_73-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_740/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_740-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_740-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_741/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_741-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_741-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_742/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_742-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_742-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_743/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_743-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_743-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_744/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_744-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_744-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_745/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_745-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_745-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_746/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_746-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_746-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_747/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_747-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_747-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_748/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_748-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_748-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_749/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_749-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_749-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_74/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_74-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_74-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_750/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_750-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_750-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_751/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_751-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_751-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_752/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_752-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_752-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_753/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_753-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_753-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_754/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_754-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_754-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_755/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_755-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_755-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_756/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_756-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_756-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_757/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_757-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_757-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_758/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_758-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_758-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_759/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_759-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_759-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_75/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_75-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_75-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_760/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_760-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_760-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_761/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_761-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_761-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_762/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_762-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_762-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_763/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_763-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_763-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_764/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_764-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_764-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_765/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_765-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_765-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_766/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_766-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_766-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_767/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_767-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_767-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_768/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_768-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_768-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_769/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_769-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_769-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_76/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_76-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_76-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_770/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_770-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_770-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_771/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_771-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_771-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_772/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_772-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_772-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_773/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_773-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_773-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_774/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_774-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_774-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_775/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_775-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_775-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_776/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_776-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_776-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_777/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_777-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_777-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_778/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_778-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_778-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_779/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_779-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_779-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_77/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_77-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_77-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_780/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_780-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_780-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_781/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_781-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_781-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_782/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_782-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_782-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_783/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_783-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_783-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_784/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_784-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_784-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_785/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_785-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_785-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_786/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_786-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_786-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_787/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_787-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_787-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_788/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_788-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_788-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_789/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_789-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_789-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_78/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_78-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_78-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_790/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_790-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_790-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_791/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_791-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_791-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_792/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_792-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_792-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_793/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_793-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_793-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_794/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_794-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_794-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_795/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_795-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_795-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_796/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_796-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_796-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_797/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_797-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_797-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_798/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_798-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_798-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_799/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_799-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_799-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_79/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_79-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_79-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_7/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_7-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_7-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_800/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_800-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_800-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_801/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_801-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_801-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_802/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_802-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_802-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_803/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_803-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_803-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_804/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_804-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_804-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_805/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_805-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_805-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_806/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_806-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_806-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_807/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_807-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_807-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_808/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_808-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_808-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_809/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_809-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_809-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_80/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_80-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_80-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_810/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_810-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_810-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_811/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_811-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_811-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_812/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_812-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_812-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_813/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_813-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_813-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_814/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_814-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_814-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_815/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_815-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_815-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_816/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_816-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_816-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_817/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_817-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_817-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_818/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_818-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_818-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_819/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_819-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_819-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_81/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_81-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_81-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_820/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_820-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_820-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_821/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_821-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_821-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_822/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_822-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_822-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_823/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_823-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_823-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_824/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_824-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_824-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_825/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_825-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_825-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_826/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_826-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_826-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_827/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_827-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_827-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_828/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_828-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_828-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_829/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_829-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_829-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_82/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_82-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_82-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_830/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_830-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_830-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_831/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_831-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_831-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_832/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_832-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_832-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_833/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_833-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_833-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_834/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_834-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_834-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_835/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_835-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_835-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_836/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_836-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_836-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_837/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_837-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_837-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_838/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_838-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_838-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_839/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_839-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_839-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_83/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_83-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_83-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_840/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_840-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_840-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_841/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_841-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_841-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_842/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_842-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_842-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_843/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_843-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_843-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_844/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_844-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_844-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_845/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_845-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_845-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_846/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_846-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_846-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_847/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_847-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_847-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_848/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_848-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_848-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_849/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_849-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_849-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_84/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_84-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_84-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_850/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_850-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_850-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_851/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_851-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_851-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_852/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_852-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_852-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_853/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_853-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_853-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_854/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_854-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_854-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_855/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_855-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_855-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_856/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_856-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_856-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_857/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_857-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_857-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_858/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_858-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_858-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_859/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_859-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_859-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_85/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_85-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_85-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_860/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_860-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_860-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_861/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_861-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_861-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_862/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_862-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_862-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_863/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_863-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_863-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_864/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_864-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_864-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_865/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_865-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_865-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_866/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_866-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_866-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_867/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_867-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_867-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_868/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_868-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_868-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_869/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_869-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_869-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_86/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_86-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_86-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_870/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_870-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_870-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_871/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_871-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_871-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_872/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_872-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_872-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_873/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_873-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_873-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_874/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_874-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_874-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_875/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_875-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_875-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_876/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_876-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_876-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_877/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_877-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_877-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_878/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_878-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_878-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_879/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_879-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_879-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_87/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_87-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_87-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_880/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_880-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_880-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_881/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_881-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_881-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_882/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_882-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_882-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_883/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_883-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_883-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_884/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_884-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_884-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_885/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_885-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_885-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_886/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_886-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_886-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_887/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_887-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_887-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_888/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_888-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_888-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_889/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_889-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_889-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_88/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_88-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_88-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_890/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_890-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_890-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_891/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_891-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_891-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_892/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_892-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_892-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_893/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_893-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_893-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_894/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_894-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_894-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_895/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_895-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_895-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_896/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_896-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_896-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_897/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_897-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_897-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_898/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_898-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_898-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_899/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_899-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_899-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_89/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_89-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_89-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_8/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_8-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_8-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_900/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_900-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_900-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_901/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_901-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_901-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_902/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_902-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_902-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_903/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_903-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_903-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_904/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_904-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_904-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_905/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_905-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_905-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_906/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_906-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_906-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_907/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_907-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_907-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_908/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_908-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_908-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_909/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_909-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_909-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_90/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_90-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_90-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_910/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_910-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_910-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_911/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_911-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_911-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_912/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_912-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_912-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_913/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_913-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_913-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_914/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_914-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_914-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_915/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_915-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_915-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_916/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_916-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_916-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_917/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_917-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_917-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_918/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_918-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_918-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_919/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_919-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_919-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_91/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_91-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_91-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_920/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_920-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_920-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_921/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_921-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_921-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_922/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_922-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_922-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_923/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_923-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_923-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_924/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_924-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_924-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_925/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_925-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_925-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_926/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_926-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_926-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_927/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_927-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_927-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_928/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_928-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_928-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_929/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_929-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_929-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_92/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_92-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_92-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_930/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_930-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_930-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_931/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_931-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_931-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_932/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_932-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_932-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_933/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_933-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_933-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_934/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_934-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_934-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_935/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_935-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_935-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_936/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_936-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_936-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_937/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_937-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_937-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_938/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_938-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_938-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_939/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_939-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_939-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_93/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_93-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_93-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_940/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_940-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_940-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_94/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_94-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_94-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_95/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_95-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_95-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_96/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_96-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_96-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_97/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_97-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_97-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_98/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_98-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_98-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_99/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_99-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_99-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_9/0 --fastq-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_9-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK47401_7f797bc105e2fb92cbec058104a6b49007168f14_9-guppy/sequencing_summary.txt