tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_0/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_0-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_0-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_100/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_100-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_100-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_101/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_101-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_101-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_102/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_102-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_102-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_103/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_103-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_103-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_104/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_104-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_104-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_105/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_105-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_105-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_106/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_106-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_106-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_107/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_107-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_107-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_108/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_108-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_108-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_109/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_109-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_109-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_10/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_10-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_10-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_110/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_110-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_110-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_111/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_111-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_111-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_112/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_112-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_112-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_113/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_113-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_113-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_114/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_114-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_114-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_115/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_115-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_115-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_116/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_116-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_116-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_117/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_117-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_117-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_118/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_118-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_118-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_119/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_119-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_119-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_11/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_11-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_11-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_120/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_120-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_120-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_121/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_121-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_121-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_122/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_122-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_122-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_123/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_123-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_123-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_124/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_124-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_124-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_125/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_125-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_125-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_126/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_126-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_126-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_127/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_127-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_127-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_128/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_128-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_128-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_129/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_129-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_129-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_12/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_12-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_12-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_130/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_130-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_130-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_131/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_131-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_131-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_132/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_132-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_132-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_133/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_133-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_133-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_134/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_134-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_134-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_135/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_135-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_135-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_136/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_136-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_136-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_137/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_137-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_137-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_138/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_138-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_138-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_139/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_139-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_139-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_13/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_13-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_13-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_140/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_140-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_140-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_141/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_141-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_141-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_142/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_142-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_142-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_143/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_143-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_143-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_144/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_144-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_144-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_145/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_145-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_145-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_146/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_146-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_146-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_147/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_147-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_147-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_148/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_148-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_148-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_149/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_149-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_149-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_14/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_14-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_14-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_150/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_150-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_150-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_151/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_151-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_151-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_152/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_152-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_152-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_153/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_153-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_153-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_154/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_154-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_154-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_155/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_155-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_155-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_156/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_156-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_156-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_157/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_157-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_157-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_158/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_158-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_158-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_159/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_159-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_159-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_15/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_15-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_15-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_160/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_160-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_160-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_161/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_161-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_161-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_162/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_162-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_162-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_163/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_163-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_163-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_164/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_164-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_164-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_165/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_165-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_165-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_166/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_166-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_166-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_167/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_167-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_167-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_168/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_168-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_168-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_169/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_169-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_169-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_16/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_16-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_16-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_170/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_170-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_170-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_171/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_171-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_171-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_172/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_172-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_172-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_173/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_173-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_173-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_174/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_174-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_174-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_175/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_175-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_175-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_176/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_176-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_176-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_177/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_177-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_177-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_178/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_178-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_178-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_179/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_179-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_179-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_17/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_17-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_17-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_180/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_180-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_180-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_181/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_181-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_181-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_182/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_182-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_182-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_183/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_183-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_183-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_184/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_184-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_184-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_185/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_185-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_185-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_186/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_186-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_186-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_187/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_187-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_187-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_188/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_188-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_188-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_189/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_189-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_189-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_18/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_18-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_18-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_190/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_190-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_190-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_191/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_191-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_191-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_192/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_192-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_192-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_193/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_193-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_193-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_194/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_194-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_194-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_195/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_195-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_195-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_196/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_196-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_196-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_197/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_197-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_197-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_198/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_198-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_198-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_199/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_199-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_199-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_19/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_19-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_19-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_1/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_1-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_1-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_200/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_200-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_200-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_201/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_201-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_201-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_202/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_202-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_202-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_203/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_203-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_203-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_204/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_204-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_204-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_205/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_205-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_205-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_206/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_206-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_206-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_207/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_207-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_207-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_208/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_208-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_208-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_209/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_209-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_209-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_20/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_20-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_20-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_210/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_210-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_210-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_211/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_211-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_211-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_212/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_212-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_212-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_213/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_213-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_213-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_214/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_214-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_214-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_215/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_215-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_215-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_216/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_216-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_216-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_217/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_217-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_217-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_218/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_218-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_218-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_219/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_219-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_219-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_21/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_21-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_21-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_220/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_220-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_220-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_221/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_221-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_221-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_222/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_222-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_222-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_223/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_223-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_223-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_224/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_224-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_224-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_225/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_225-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_225-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_226/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_226-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_226-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_227/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_227-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_227-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_228/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_228-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_228-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_229/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_229-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_229-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_22/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_22-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_22-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_230/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_230-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_230-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_231/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_231-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_231-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_232/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_232-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_232-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_233/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_233-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_233-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_234/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_234-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_234-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_235/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_235-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_235-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_236/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_236-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_236-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_237/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_237-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_237-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_238/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_238-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_238-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_239/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_239-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_239-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_23/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_23-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_23-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_240/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_240-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_240-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_241/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_241-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_241-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_242/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_242-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_242-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_243/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_243-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_243-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_244/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_244-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_244-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_245/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_245-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_245-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_246/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_246-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_246-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_247/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_247-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_247-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_248/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_248-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_248-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_249/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_249-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_249-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_24/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_24-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_24-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_250/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_250-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_250-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_251/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_251-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_251-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_252/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_252-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_252-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_253/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_253-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_253-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_254/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_254-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_254-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_255/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_255-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_255-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_256/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_256-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_256-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_257/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_257-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_257-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_258/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_258-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_258-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_259/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_259-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_259-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_25/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_25-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_25-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_260/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_260-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_260-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_261/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_261-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_261-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_262/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_262-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_262-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_263/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_263-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_263-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_264/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_264-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_264-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_265/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_265-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_265-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_266/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_266-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_266-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_267/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_267-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_267-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_268/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_268-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_268-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_269/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_269-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_269-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_26/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_26-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_26-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_270/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_270-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_270-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_271/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_271-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_271-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_272/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_272-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_272-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_273/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_273-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_273-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_274/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_274-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_274-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_275/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_275-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_275-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_276/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_276-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_276-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_277/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_277-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_277-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_278/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_278-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_278-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_279/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_279-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_279-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_27/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_27-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_27-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_280/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_280-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_280-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_281/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_281-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_281-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_282/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_282-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_282-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_283/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_283-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_283-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_284/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_284-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_284-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_285/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_285-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_285-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_286/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_286-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_286-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_287/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_287-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_287-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_288/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_288-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_288-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_289/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_289-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_289-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_28/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_28-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_28-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_290/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_290-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_290-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_291/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_291-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_291-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_292/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_292-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_292-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_293/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_293-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_293-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_294/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_294-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_294-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_295/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_295-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_295-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_296/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_296-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_296-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_297/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_297-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_297-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_298/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_298-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_298-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_299/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_299-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_299-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_29/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_29-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_29-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_2/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_2-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_2-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_300/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_300-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_300-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_301/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_301-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_301-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_302/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_302-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_302-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_303/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_303-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_303-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_304/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_304-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_304-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_305/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_305-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_305-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_306/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_306-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_306-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_307/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_307-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_307-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_308/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_308-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_308-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_309/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_309-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_309-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_30/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_30-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_30-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_310/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_310-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_310-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_311/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_311-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_311-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_312/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_312-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_312-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_313/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_313-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_313-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_314/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_314-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_314-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_315/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_315-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_315-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_316/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_316-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_316-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_317/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_317-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_317-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_318/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_318-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_318-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_319/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_319-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_319-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_31/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_31-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_31-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_320/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_320-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_320-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_321/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_321-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_321-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_322/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_322-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_322-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_323/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_323-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_323-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_324/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_324-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_324-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_325/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_325-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_325-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_326/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_326-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_326-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_327/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_327-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_327-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_328/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_328-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_328-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_329/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_329-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_329-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_32/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_32-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_32-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_330/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_330-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_330-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_331/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_331-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_331-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_332/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_332-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_332-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_333/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_333-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_333-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_334/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_334-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_334-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_335/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_335-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_335-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_336/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_336-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_336-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_337/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_337-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_337-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_338/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_338-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_338-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_339/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_339-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_339-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_33/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_33-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_33-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_340/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_340-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_340-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_341/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_341-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_341-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_342/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_342-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_342-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_343/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_343-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_343-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_344/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_344-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_344-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_345/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_345-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_345-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_346/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_346-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_346-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_347/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_347-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_347-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_348/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_348-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_348-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_349/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_349-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_349-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_34/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_34-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_34-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_350/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_350-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_350-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_351/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_351-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_351-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_352/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_352-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_352-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_353/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_353-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_353-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_354/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_354-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_354-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_355/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_355-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_355-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_356/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_356-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_356-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_357/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_357-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_357-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_358/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_358-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_358-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_359/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_359-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_359-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_35/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_35-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_35-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_360/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_360-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_360-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_361/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_361-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_361-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_362/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_362-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_362-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_363/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_363-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_363-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_364/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_364-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_364-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_365/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_365-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_365-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_366/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_366-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_366-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_367/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_367-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_367-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_368/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_368-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_368-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_369/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_369-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_369-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_36/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_36-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_36-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_370/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_370-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_370-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_371/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_371-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_371-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_372/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_372-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_372-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_373/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_373-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_373-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_374/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_374-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_374-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_375/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_375-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_375-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_376/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_376-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_376-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_377/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_377-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_377-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_378/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_378-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_378-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_379/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_379-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_379-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_37/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_37-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_37-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_380/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_380-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_380-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_381/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_381-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_381-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_382/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_382-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_382-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_383/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_383-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_383-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_384/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_384-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_384-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_385/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_385-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_385-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_386/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_386-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_386-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_387/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_387-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_387-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_388/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_388-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_388-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_389/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_389-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_389-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_38/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_38-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_38-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_390/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_390-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_390-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_391/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_391-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_391-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_392/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_392-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_392-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_393/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_393-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_393-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_39/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_39-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_39-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_3/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_3-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_3-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_40/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_40-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_40-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_41/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_41-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_41-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_42/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_42-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_42-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_43/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_43-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_43-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_44/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_44-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_44-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_45/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_45-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_45-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_46/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_46-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_46-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_47/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_47-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_47-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_48/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_48-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_48-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_49/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_49-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_49-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_4/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_4-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_4-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_50/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_50-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_50-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_51/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_51-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_51-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_52/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_52-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_52-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_53/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_53-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_53-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_54/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_54-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_54-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_55/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_55-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_55-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_56/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_56-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_56-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_57/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_57-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_57-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_58/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_58-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_58-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_59/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_59-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_59-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_5/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_5-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_5-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_60/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_60-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_60-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_61/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_61-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_61-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_62/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_62-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_62-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_63/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_63-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_63-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_64/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_64-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_64-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_65/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_65-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_65-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_66/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_66-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_66-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_67/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_67-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_67-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_68/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_68-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_68-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_69/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_69-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_69-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_6/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_6-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_6-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_70/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_70-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_70-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_71/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_71-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_71-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_72/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_72-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_72-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_73/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_73-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_73-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_74/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_74-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_74-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_75/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_75-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_75-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_76/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_76-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_76-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_77/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_77-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_77-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_78/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_78-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_78-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_79/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_79-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_79-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_7/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_7-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_7-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_80/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_80-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_80-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_81/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_81-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_81-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_82/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_82-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_82-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_83/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_83-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_83-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_84/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_84-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_84-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_85/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_85-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_85-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_86/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_86-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_86-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_87/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_87-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_87-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_88/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_88-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_88-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_89/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_89-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_89-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_8/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_8-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_8-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_90/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_90-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_90-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_91/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_91-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_91-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_92/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_92-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_92-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_93/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_93-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_93-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_94/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_94-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_94-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_95/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_95-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_95-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_96/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_96-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_96-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_97/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_97-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_97-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_98/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_98-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_98-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_99/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_99-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_99-guppy/sequencing_summary.txt
tombo preprocess annotate_raw_with_fastqs --processes 20 --overwrite --fast5-basedir single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_9/0 --fastq-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_9-guppy/all.fastq --sequencing-summary-filenames single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_9-guppy/sequencing_summary.txt