tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_0/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_0/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_0
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_100/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_100/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_100
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_101/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_101/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_101
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_102/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_102/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_102
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_103/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_103/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_103
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_104/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_104/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_104
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_105/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_105/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_105
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_106/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_106/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_106
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_107/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_107/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_107
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_108/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_108/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_108
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_109/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_109/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_109
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_10/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_10/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_10
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_110/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_110/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_110
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_111/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_111/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_111
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_112/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_112/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_112
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_113/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_113/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_113
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_114/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_114/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_114
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_115/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_115/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_115
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_116/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_116/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_116
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_117/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_117/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_117
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_118/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_118/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_118
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_119/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_119/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_119
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_11/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_11/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_11
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_120/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_120/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_120
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_121/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_121/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_121
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_122/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_122/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_122
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_123/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_123/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_123
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_124/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_124/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_124
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_125/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_125/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_125
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_126/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_126/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_126
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_127/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_127/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_127
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_128/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_128/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_128
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_129/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_129/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_129
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_12/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_12/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_12
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_130/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_130/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_130
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_131/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_131/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_131
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_132/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_132/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_132
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_133/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_133/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_133
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_134/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_134/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_134
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_135/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_135/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_135
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_136/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_136/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_136
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_137/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_137/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_137
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_138/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_138/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_138
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_139/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_139/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_139
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_13/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_13/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_13
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_140/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_140/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_140
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_141/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_141/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_141
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_142/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_142/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_142
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_143/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_143/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_143
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_144/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_144/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_144
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_145/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_145/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_145
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_146/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_146/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_146
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_147/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_147/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_147
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_148/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_148/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_148
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_149/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_149/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_149
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_14/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_14/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_14
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_150/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_150/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_150
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_151/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_151/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_151
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_152/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_152/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_152
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_153/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_153/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_153
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_154/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_154/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_154
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_155/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_155/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_155
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_156/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_156/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_156
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_157/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_157/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_157
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_158/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_158/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_158
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_159/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_159/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_159
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_15/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_15/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_15
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_160/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_160/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_160
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_161/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_161/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_161
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_162/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_162/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_162
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_163/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_163/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_163
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_164/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_164/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_164
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_165/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_165/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_165
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_166/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_166/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_166
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_167/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_167/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_167
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_168/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_168/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_168
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_169/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_169/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_169
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_16/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_16/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_16
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_170/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_170/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_170
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_171/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_171/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_171
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_172/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_172/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_172
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_173/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_173/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_173
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_174/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_174/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_174
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_175/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_175/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_175
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_176/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_176/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_176
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_177/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_177/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_177
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_178/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_178/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_178
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_179/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_179/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_179
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_17/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_17/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_17
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_180/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_180/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_180
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_181/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_181/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_181
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_182/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_182/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_182
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_183/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_183/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_183
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_184/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_184/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_184
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_185/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_185/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_185
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_186/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_186/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_186
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_187/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_187/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_187
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_188/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_188/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_188
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_189/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_189/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_189
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_18/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_18/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_18
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_190/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_190/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_190
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_191/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_191/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_191
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_192/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_192/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_192
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_193/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_193/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_193
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_194/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_194/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_194
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_195/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_195/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_195
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_196/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_196/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_196
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_197/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_197/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_197
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_198/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_198/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_198
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_199/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_199/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_199
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_19/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_19/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_19
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_1/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_1/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_1
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_200/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_200/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_200
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_201/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_201/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_201
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_202/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_202/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_202
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_203/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_203/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_203
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_204/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_204/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_204
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_205/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_205/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_205
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_206/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_206/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_206
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_207/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_207/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_207
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_208/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_208/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_208
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_209/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_209/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_209
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_20/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_20/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_20
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_210/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_210/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_210
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_211/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_211/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_211
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_212/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_212/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_212
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_213/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_213/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_213
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_214/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_214/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_214
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_215/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_215/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_215
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_216/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_216/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_216
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_217/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_217/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_217
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_218/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_218/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_218
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_219/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_219/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_219
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_21/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_21/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_21
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_220/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_220/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_220
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_221/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_221/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_221
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_222/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_222/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_222
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_223/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_223/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_223
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_224/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_224/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_224
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_225/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_225/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_225
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_226/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_226/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_226
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_227/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_227/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_227
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_228/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_228/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_228
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_229/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_229/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_229
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_22/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_22/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_22
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_230/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_230/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_230
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_231/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_231/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_231
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_232/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_232/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_232
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_233/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_233/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_233
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_234/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_234/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_234
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_235/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_235/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_235
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_236/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_236/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_236
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_237/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_237/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_237
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_238/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_238/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_238
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_239/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_239/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_239
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_23/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_23/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_23
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_240/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_240/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_240
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_241/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_241/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_241
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_242/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_242/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_242
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_243/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_243/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_243
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_244/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_244/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_244
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_245/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_245/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_245
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_246/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_246/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_246
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_247/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_247/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_247
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_248/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_248/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_248
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_249/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_249/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_249
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_24/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_24/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_24
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_250/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_250/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_250
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_251/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_251/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_251
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_252/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_252/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_252
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_253/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_253/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_253
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_254/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_254/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_254
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_255/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_255/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_255
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_256/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_256/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_256
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_257/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_257/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_257
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_258/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_258/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_258
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_259/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_259/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_259
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_25/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_25/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_25
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_260/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_260/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_260
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_261/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_261/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_261
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_262/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_262/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_262
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_263/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_263/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_263
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_264/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_264/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_264
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_265/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_265/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_265
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_266/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_266/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_266
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_267/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_267/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_267
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_268/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_268/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_268
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_269/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_269/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_269
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_26/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_26/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_26
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_270/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_270/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_270
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_271/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_271/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_271
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_272/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_272/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_272
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_273/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_273/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_273
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_274/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_274/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_274
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_275/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_275/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_275
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_276/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_276/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_276
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_277/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_277/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_277
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_278/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_278/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_278
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_279/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_279/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_279
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_27/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_27/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_27
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_280/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_280/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_280
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_281/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_281/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_281
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_282/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_282/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_282
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_283/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_283/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_283
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_284/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_284/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_284
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_285/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_285/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_285
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_286/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_286/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_286
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_287/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_287/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_287
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_288/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_288/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_288
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_289/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_289/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_289
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_28/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_28/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_28
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_290/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_290/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_290
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_291/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_291/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_291
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_292/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_292/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_292
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_293/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_293/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_293
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_294/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_294/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_294
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_295/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_295/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_295
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_296/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_296/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_296
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_297/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_297/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_297
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_298/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_298/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_298
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_299/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_299/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_299
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_29/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_29/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_29
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_2/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_2/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_2
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_300/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_300/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_300
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_301/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_301/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_301
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_302/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_302/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_302
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_303/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_303/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_303
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_304/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_304/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_304
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_305/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_305/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_305
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_306/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_306/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_306
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_307/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_307/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_307
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_308/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_308/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_308
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_309/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_309/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_309
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_30/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_30/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_30
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_310/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_310/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_310
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_311/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_311/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_311
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_312/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_312/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_312
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_313/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_313/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_313
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_314/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_314/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_314
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_315/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_315/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_315
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_316/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_316/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_316
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_317/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_317/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_317
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_318/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_318/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_318
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_319/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_319/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_319
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_31/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_31/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_31
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_320/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_320/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_320
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_321/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_321/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_321
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_322/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_322/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_322
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_323/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_323/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_323
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_324/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_324/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_324
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_325/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_325/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_325
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_326/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_326/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_326
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_327/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_327/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_327
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_328/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_328/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_328
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_329/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_329/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_329
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_32/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_32/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_32
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_330/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_330/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_330
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_331/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_331/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_331
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_332/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_332/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_332
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_333/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_333/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_333
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_334/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_334/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_334
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_335/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_335/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_335
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_336/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_336/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_336
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_337/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_337/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_337
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_338/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_338/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_338
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_339/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_339/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_339
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_33/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_33/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_33
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_340/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_340/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_340
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_341/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_341/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_341
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_342/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_342/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_342
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_343/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_343/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_343
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_344/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_344/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_344
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_345/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_345/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_345
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_346/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_346/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_346
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_347/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_347/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_347
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_348/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_348/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_348
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_349/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_349/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_349
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_34/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_34/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_34
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_350/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_350/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_350
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_351/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_351/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_351
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_352/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_352/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_352
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_353/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_353/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_353
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_354/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_354/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_354
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_355/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_355/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_355
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_356/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_356/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_356
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_357/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_357/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_357
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_358/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_358/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_358
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_359/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_359/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_359
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_35/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_35/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_35
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_360/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_360/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_360
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_361/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_361/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_361
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_362/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_362/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_362
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_363/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_363/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_363
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_364/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_364/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_364
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_365/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_365/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_365
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_366/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_366/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_366
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_367/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_367/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_367
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_368/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_368/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_368
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_369/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_369/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_369
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_36/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_36/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_36
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_370/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_370/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_370
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_371/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_371/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_371
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_372/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_372/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_372
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_373/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_373/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_373
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_374/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_374/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_374
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_375/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_375/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_375
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_376/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_376/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_376
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_377/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_377/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_377
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_378/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_378/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_378
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_379/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_379/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_379
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_37/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_37/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_37
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_380/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_380/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_380
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_381/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_381/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_381
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_382/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_382/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_382
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_383/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_383/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_383
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_384/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_384/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_384
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_385/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_385/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_385
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_386/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_386/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_386
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_387/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_387/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_387
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_388/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_388/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_388
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_389/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_389/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_389
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_38/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_38/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_38
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_390/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_390/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_390
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_391/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_391/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_391
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_392/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_392/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_392
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_393/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_393/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_393
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_39/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_39/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_39
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_3/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_3/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_3
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_40/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_40/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_40
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_41/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_41/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_41
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_42/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_42/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_42
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_43/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_43/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_43
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_44/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_44/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_44
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_45/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_45/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_45
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_46/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_46/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_46
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_47/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_47/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_47
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_48/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_48/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_48
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_49/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_49/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_49
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_4/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_4/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_4
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_50/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_50/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_50
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_51/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_51/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_51
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_52/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_52/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_52
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_53/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_53/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_53
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_54/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_54/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_54
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_55/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_55/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_55
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_56/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_56/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_56
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_57/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_57/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_57
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_58/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_58/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_58
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_59/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_59/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_59
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_5/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_5/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_5
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_60/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_60/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_60
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_61/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_61/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_61
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_62/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_62/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_62
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_63/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_63/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_63
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_64/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_64/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_64
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_65/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_65/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_65
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_66/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_66/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_66
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_67/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_67/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_67
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_68/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_68/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_68
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_69/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_69/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_69
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_6/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_6/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_6
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_70/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_70/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_70
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_71/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_71/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_71
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_72/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_72/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_72
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_73/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_73/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_73
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_74/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_74/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_74
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_75/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_75/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_75
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_76/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_76/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_76
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_77/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_77/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_77
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_78/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_78/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_78
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_79/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_79/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_79
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_7/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_7/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_7
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_80/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_80/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_80
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_81/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_81/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_81
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_82/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_82/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_82
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_83/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_83/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_83
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_84/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_84/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_84
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_85/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_85/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_85
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_86/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_86/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_86
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_87/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_87/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_87
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_88/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_88/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_88
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_89/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_89/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_89
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_8/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_8/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_8
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_90/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_90/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_90
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_91/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_91/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_91
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_92/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_92/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_92
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_93/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_93/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_93
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_94/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_94/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_94
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_95/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_95/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_95
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_96/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_96/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_96
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_97/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_97/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_97
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_98/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_98/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_98
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_99/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_99/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_99
tombo detect_modifications alternative_model --alternate-bases 5mC 6mA --statistics-file-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_9/tombo.alternative.stats --per-read-statistics-basename single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_9/tombo.alternative.mods.per_read --processes 20 --multiprocess-region-size 2000000 --fast5-basedirs single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_9