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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_100/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_100 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_101/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_101 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_102/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_102 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_103/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_103 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_104/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_104 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_105/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_105 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_106/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_106 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_107/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_107 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_108/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_108 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_109/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_109 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_10/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_10 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_110/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_110 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_111/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_111 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_112/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_112 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_113/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_113 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_114/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_114 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_115/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_115 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_116/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_116 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_117/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_117 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_118/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_118 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_119/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_119 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_11/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_11 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_120/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_120 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_121/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_121 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_122/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_122 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_123/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_123 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_124/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_124 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_125/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_125 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_126/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_126 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_127/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_127 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_128/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_128 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_129/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_129 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_12/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_12 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_130/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_130 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_131/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_131 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_132/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_132 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_133/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_133 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_134/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_134 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_135/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_135 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_137/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_137 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_138/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_138 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_13/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_13 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_142/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_142 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_143/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_143 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_144/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_144 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_145/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_145 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_146/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_146 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_147/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_147 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_148/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_148 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_149/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_149 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_14/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_14 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_150/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_150 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_151/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_151 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_152/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_152 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_153/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_153 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_154/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_154 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_155/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_155 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_156/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_156 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_157/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_157 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_158/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_158 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_159/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_159 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_15/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_15 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_160/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_160 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_161/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_161 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_162/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_162 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_163/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_163 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_164/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_164 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_165/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_165 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_166/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_166 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_167/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_167 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_168/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_168 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_169/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_169 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_16/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_16 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_170/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_170 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_171/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_171 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_173/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_173 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_174/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_174 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_175/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_175 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_176/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_176 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_177/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_177 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_17/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_17 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_180/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_180 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_181/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_181 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_182/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_182 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_183/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_183 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_184/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_184 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_185/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_185 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_186/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_186 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_187/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_187 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_188/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_188 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_189/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_189 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_18/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_18 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_190/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_190 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_191/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_191 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_192/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_192 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_193/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_193 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_194/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_194 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_195/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_195 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_196/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_196 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_197/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_197 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_198/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_198 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_199/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_199 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_19/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_19 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_1/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_1 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_200/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_200 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_201/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_201 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_202/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_202 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_203/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_203 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_204/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_204 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_205/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_205 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_206/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_206 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_207/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_207 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_209/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_209 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_211/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_211 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_216/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_216 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_217/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_217 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_218/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_218 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_219/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_219 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_21/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_21 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_220/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_220 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_221/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_221 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_222/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_222 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_223/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_223 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_224/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_224 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_225/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_225 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_226/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_226 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_227/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_227 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_228/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_228 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_229/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_229 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_22/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_22 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_230/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_230 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_231/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_231 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_232/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_232 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_233/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_233 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_234/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_234 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_235/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_235 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_236/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_236 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_237/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_237 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_238/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_238 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_239/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_239 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_23/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_23 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_240/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_240 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_241/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_241 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_242/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_242 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_243/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_243 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_245/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_245 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_246/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_246 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_247/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_247 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_248/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_248 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_249/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_249 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_24/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_24 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_250/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_250 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_251/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_251 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_252/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_252 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_253/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_253 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_254/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_254 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_255/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_255 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_256/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_256 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_257/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_257 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_258/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_258 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_259/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_259 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_25/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_25 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_260/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_260 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_261/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_261 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_262/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_262 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_263/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_263 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_264/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_264 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_265/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_265 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_266/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_266 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_267/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_267 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_268/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_268 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_269/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_269 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_26/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_26 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_270/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_270 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_271/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_271 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_272/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_272 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_273/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_273 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_274/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_274 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_275/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_275 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_276/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_276 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_277/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_277 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_278/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_278 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_279/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_279 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_27/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_27 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_281/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_281 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_282/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_282 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_284/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_284 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_285/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_285 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_288/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_288 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_289/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_289 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_28/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_28 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_290/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_290 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_291/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_291 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_292/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_292 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_293/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_293 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_294/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_294 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_295/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_295 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_296/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_296 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_297/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_297 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_298/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_298 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_299/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_299 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_29/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_29 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_2/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_2 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_300/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_300 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_301/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_301 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_302/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_302 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_303/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_303 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_304/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_304 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_305/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_305 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_306/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_306 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_307/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_307 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_308/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_308 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_309/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_309 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_30/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_30 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_310/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_310 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_311/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_311 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_312/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_312 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_313/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_313 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_314/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_314 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_315/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_315 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_317/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_317 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_318/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_318 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_319/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_319 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_31/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_31 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_322/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_322 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_323/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_323 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_324/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_324 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_325/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_325 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_326/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_326 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_327/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_327 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_328/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_328 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_329/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_329 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_32/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_32 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_330/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_330 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_331/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_331 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_332/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_332 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_333/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_333 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_334/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_334 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_335/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_335 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_336/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_336 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_337/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_337 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_338/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_338 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_339/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_339 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_33/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_33 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_340/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_340 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_341/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_341 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_342/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_342 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_343/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_343 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_344/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_344 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_345/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_345 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_346/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_346 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_347/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_347 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_348/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_348 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_349/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_349 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_34/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_34 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_350/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_350 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_351/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_351 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_353/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_353 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_354/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_354 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_356/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_356 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_360/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_360 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_361/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_361 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_362/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_362 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_363/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_363 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_364/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_364 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_365/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_365 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_366/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_366 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_367/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_367 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_368/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_368 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_369/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_369 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_36/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_36 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_370/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_370 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_371/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_371 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_372/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_372 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_373/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_373 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_374/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_374 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_375/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_375 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_376/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_376 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_377/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_377 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_378/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_378 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_379/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_379 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_37/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_37 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_380/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_380 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_381/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_381 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_382/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_382 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_383/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_383 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_384/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_384 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_385/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_385 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_386/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_386 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_387/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_387 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_388/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_388 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_38/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_38 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_390/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_390 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_391/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_391 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_392/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_392 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_40/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_40 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_41/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_41 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_42/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_42 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_43/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_43 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_44/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_44 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_45/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_45 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_46/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_46 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_47/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_47 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_48/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_48 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_49/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_49 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_4/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_4 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_50/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_50 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_51/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_51 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_52/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_52 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_53/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_53 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_54/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_54 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_55/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_55 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_56/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_56 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_57/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_57 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_58/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_58 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_59/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_59 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_5/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_5 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_60/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_60 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_61/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_61 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_62/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_62 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_63/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_63 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_64/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_64 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_65/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_65 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_66/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_66 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_67/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_67 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_68/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_68 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_69/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_69 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_70/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_70 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_71/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_71 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_72/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_72 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_73/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_73 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_74/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_74 -m6A-only -excludeContext CG 1 &
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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_77/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_77 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_78/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_78 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_79/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_79 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_7/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_7 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_80/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_80 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_81/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_81 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_82/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_82 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_83/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_83 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_84/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_84 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_85/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_85 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_86/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_86 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_87/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_87 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_88/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_88 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_89/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_89 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_8/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_8 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_90/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_90 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_91/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_91 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_92/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_92 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_93/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_93 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_94/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_94 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_95/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_95 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_96/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_96 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_97/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_97 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_98/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_98 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_99/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_99 -m6A-only -excludeContext CG 1 &
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_9/tombo.mods.per_read.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/hg38/sequence/hg38-no-haps.fa single_fast5-output-FAK54415_68d5e59ec708dddf149f3d6a6409b0b6d150de56_9 -m6A-only -excludeContext CG 1 &