## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[input_KmgKD_lib2.2x36mers.dm6.unique.bam] OUTPUT=input_KmgKD_lib2.2x36mers.dm6.unique.dedup.bam METRICS_FILE=input_KmgKD_lib2.2x36mers.dm6.unique.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Fri Jan 20 10:06:55 PST 2023

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	2665464	0	0	128699	74624	0.048284	61199478

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.02818
2.0	2.012541
3.0	2.954949
4.0	3.857193
5.0	4.720984
6.0	5.547962
7.0	6.339694
8.0	7.097684
9.0	7.82337
10.0	8.518127
11.0	9.183274
12.0	9.820074
13.0	10.429734
14.0	11.013411
15.0	11.572213
16.0	12.107199
17.0	12.619384
18.0	13.109741
19.0	13.579199
20.0	14.028649
21.0	14.458945
22.0	14.870901
23.0	15.265301
24.0	15.642892
25.0	16.00439
26.0	16.350481
27.0	16.681823
28.0	16.999043
29.0	17.302744
30.0	17.593501
31.0	17.871866
32.0	18.138368
33.0	18.393512
34.0	18.637782
35.0	18.871641
36.0	19.095534
37.0	19.309884
38.0	19.515099
39.0	19.711568
40.0	19.899664
41.0	20.079744
42.0	20.252148
43.0	20.417205
44.0	20.575228
45.0	20.726515
46.0	20.871355
47.0	21.010022
48.0	21.142779
49.0	21.269879
50.0	21.391561
51.0	21.508057
52.0	21.619589
53.0	21.726367
54.0	21.828594
55.0	21.926465
56.0	22.020164
57.0	22.109871
58.0	22.195753
59.0	22.277976
60.0	22.356695
61.0	22.432058
62.0	22.50421
63.0	22.573286
64.0	22.639419
65.0	22.702733
66.0	22.763349
67.0	22.821381
68.0	22.87694
69.0	22.930132
70.0	22.981056
71.0	23.02981
72.0	23.076486
73.0	23.121173
74.0	23.163955
75.0	23.204914
76.0	23.244128
77.0	23.28167
78.0	23.317612
79.0	23.352022
80.0	23.384966
81.0	23.416506
82.0	23.446701
83.0	23.47561
84.0	23.503287
85.0	23.529784
86.0	23.555152
87.0	23.579438
88.0	23.60269
89.0	23.624951
90.0	23.646262
91.0	23.666666
92.0	23.6862
93.0	23.704902
94.0	23.722806
95.0	23.739948
96.0	23.756358
97.0	23.77207
98.0	23.787112
99.0	23.801513
100.0	23.8153

