Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_131"; scripts/juicer.sh -t 60 -D /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-11-09-osteosarcoma-Hi-C-assembly/juicer-L1983-OS08_Hi-C -d /oak/stanford/groups/akundaje/marinovg/ENCODE4/Chromatin-nanopores/2021-11-09-osteosarcoma-Hi-C-assembly/juicer-L1983-OS08_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-no-haps.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/hg20/bwa-indexes/hg38-no-haps.fa                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  129,450,366
 Normal Paired: 96,383,477 (74.46%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 33,066,889 (25.54%)
 Ligation Motif Present: 23,526,940 (18.17%)
Alignable (Normal+Chimeric Paired): 96,383,477 (74.46%)
Unique Reads: 92,313,061 (71.31%)
PCR Duplicates: 4,018,158 (3.10%)
Optical Duplicates: 52,258 (0.04%)
Library Complexity Estimate: 1,122,382,366
Intra-fragment Reads: 840,923 (0.65% / 0.91%)
Below MAPQ Threshold: 27,528,000 (21.27% / 29.82%)
Hi-C Contacts: 63,944,138 (49.40% / 69.27%)
 Ligation Motif Present: 3,402,294  (2.63% / 3.69%)
 3' Bias (Long Range): 82% - 18%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 10,012,106  (7.73% / 10.85%)
Intra-chromosomal: 53,932,032  (41.66% / 58.42%)
Short Range (<20Kb): 23,688,977  (18.30% / 25.66%)
Long Range (>20Kb): 30,243,026  (23.36% / 32.76%)