1. T-bet Suppresses TGF-b-independent Gut-resident Memory CD8+ T Cell Differentiation. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL21493 22 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184629/ Series Accession: GSE184629 ID: 200184629 2. T-bet Suppresses TGF-b-independent Gut-resident Memory CD8+ T Cell Differentiation [ATAC-seq] (Submitter supplied) TGF-beta signaling is required for the differentiation of gut-resident memory CD8 T cells. Here, we showed that the deficiency of transcription factor T-bet partially rescued the differentiation of TGF-beta receptor deficient gut-resident memory CD8 T cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA765391 Series Accession: GSE184628 ID: 200184628 3. ATAC-seq of Embronic Hindgut Epithelia from WT mice (Submitter supplied) The goal of this study is to study the chromatin accessibility signature of embronic hindgut epithelia Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA746315 Series Accession: GSE180037 ID: 200180037 4. C-FOS-driven basal to squamous cell transition (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 4 related Platforms 47 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168376/ Series Accession: GSE168376 ID: 200168376 5. Genetic control of pluripotency epigenome informs differentiation bias in mouse embryonic stem cells (Submitter supplied) Genetically diverse pluripotent stem cells (PSCs) display varied, heritable responses to differentiation cues in the culture environment. By harnessing these disparities through derivation of embryonic stem cells (ESCs) from the BXD mouse genetic reference panel, along with C57BL/6J (B6) and DBA/2J (D2) parental strains, we demonstrate genetically determined biases in lineage commitment and identify major regulators of the pluripotency epigenome. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 174 Samples FTP download: GEO (CSV, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692475 Series Accession: GSE164935 ID: 200164935 6. Chromatin accessibility changes in experimentally-induced basal to squamous cell carcinoma transition (BST) (Submitter supplied) Basal cell carcinoma may undergo BST spontaneously or upon Hedgehog targeting therapy. We identified that modulation of Ras/MAPK or TGFb signaling drive BST. Here, we induce Ras/MAPK and/or abrogate TGFb signaling to induce BST. Alternatively we drive c-FOS to induce BST. In these various experimentally-induced model of BST, we analyze chromatin accessibility profiles upon Ras/MAPK activation and/or TGFb signaling abrogation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL13112 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675105 Series Accession: GSE161009 ID: 200161009 7. SATB2 preserves colon stem cell identity and mediates ileum-colon conversion via enhancer remodeling (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 4 related Platforms 148 Samples FTP download: GEO (BED, BW, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148695/ Series Accession: GSE148695 ID: 200148695 8. ATAC-seq of Intestine Epithelia (Ileum and Colon) from Satb2-deficient and WT mice (Submitter supplied) The goal of this study is to study the chromatin accessibility signature after Satb2 gene loss in the colonic epithelium. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625438 Series Accession: GSE148690 ID: 200148690 9. Ruminant-specific retrotransposons shape regulatory evolution of bovine immunity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Bos taurus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL26012 68 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE185nnn/GSE185082/ Series Accession: GSE185082 ID: 200185082 10. Chromatin profiling of the innate immune response in bovine MDBK cells (Submitter supplied) Cattle are an important livestock species, and understanding the genomic architecture of agriculturally relevant traits such as disease susceptibility is of major interest in the bovine research community. Lineage-specific transposable elements (TEs) are a source of interferon-gamma (IFNG)-inducible regulatory elements that control human immune genes, but this possibility has been largely unexplored in other species that harbor distinct transposon landscapes, including cattle. more... Organism: Bos taurus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL26012 4 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE185nnn/GSE185079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA767621 Series Accession: GSE185079 ID: 200185079 11. Transcription Factor MEF2D is Required for the Maintenance of MLL-rearranged Acute Myeloid Leukemia [ATAC-Seq] (Submitter supplied) Acute myeloid leukemia (AML) with MLL-rearrangement (MLL-r) comprises approximately 10% of all AML cases and portends poor outcomes. Much remains to be uncovered on how MLL-r AML drives leukemia development while preventing cells from normal myeloid differentiation. Here, we identified that transcription factor MEF2D is a highly expressed gene with a super-enhancer MLL-r AML. Knockout of MEF2D profoundly impaired leukemia growth, induced myeloid differentiation, and delayed oncogenic progression in vivo. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA698821 Series Accession: GSE165979 ID: 200165979 12. Revealing regulatory transcription factors of aging in the kidney and kidney through multi-omics analysis (Submitter supplied) Aging is accompanied by a gradual loss of systemic metabolic homeostasis, which is maintained by multiple-organs, especially the kidney and kidney. However, a systematic study of the regulatory networks and regulatory transcription factors (TFs) of aging in the kidney and kidney remains lacking. Here, we performed an integrated analysis of multi-omics datasets in the kidney and kidney from young and aged mice, including RNA-seq, reduced representation bisulfite sequencing (RRBS) and ATAC-seq datasets, which indicated that enhanced inflammation and dysregulated metabolism were conserved signatures in aged kidney and kidney in both the transcriptome and epigenome. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24247 GPL21273 50 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA753496 Series Accession: GSE181797 ID: 200181797 13. Unveiling E2F4, TEAD1 and AP-1 as regulatory transcription factors of the replicative senescence program by multi-omics analysis (Submitter supplied) Senescence, a stable state of growth arrest, affects many physiological and pathophysiological processes, especially aging. Previous work has indicated that transcription factors (TFs) play a role in regulating senescence. However, a systematic study of regulatory TFs during replicative senescence (RS) using multi-omics analysis is still lacking. Here, we generated time-resolved RNA-seq, reduced representation bisulfite sequencing (RRBS) and ATAC-seq datasets during RS of mouse skin fibroblasts, which demonstrated that an enhanced inflammatory response and reduced proliferative capacity were the main characteristics of RS in both the transcriptome and epigenome. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL21273 GPL24247 75 Samples FTP download: GEO (COV, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA745457 Series Accession: GSE179880 ID: 200179880 14. Cyclical macrophage plasticity provides periodic inflammatory and regenerative gene expression programs in cell cycle [scATAC-seq] (Submitter supplied) Cell cycle (CC) is a fundamental biological process with robust, cyclical gene expression programs to facilitate cell division. In the immune system, a productive immune response requires the expansion of pathogen-responsive cell types, but whether CC also confers unique gene expression programs that inform the subsequent immunological response remains unclear. Here we demonstrate that single macrophages adopt different plasticity states in CC which is a major source of heterogeneity in response to polarizing cytokines. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 5 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA739500 Series Accession: GSE178524 ID: 200178524 15. Cis-regulatory architecture of human ESC-derived hypothalamic neuron differentiation aids in variant-to-gene mapping of relevant common complex traits (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL24676 32 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152098/ Series Accession: GSE152098 ID: 200152098 16. Cis-regulatory architecture of human ESC-derived hypothalamic neuron differentiation aids in variant-to-gene mapping of relevant common complex traits (RNA-Seq) (Submitter supplied) To investigate the role of the hypothalamus in influencing complex traits, we generated ATAC-seq, RNA-seq, and Promoter Focused Capture C to gain insight into the gene regulatory arcitecture contacting promoters in an embryonic stem cell dervived model of hypothalamic neuron differentiation Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL24676 9 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638301 Series Accession: GSE152097 ID: 200152097 17. Cis-regulatory architecture of human ESC-derived hypothalamic neuron differentiation aids in variant-to-gene mapping of relevant common complex traits (Capture C) (Submitter supplied) To investigate the role of the hypothalamus in complex traits, we generated ATAC-seq, RNA-seq, and Promoter Focused Capture C to gain insight into the gene regulatory arcitecture contacting promoters in an embryonic stem cell dervived model of hypothalamic neuron differentiation Organism: Homo sapiens Type: Other Platform: GPL24676 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638300 Series Accession: GSE152092 ID: 200152092 18. Cis-regulatory architecture of human ESC-derived hypothalamic neuron differentiation aids in variant-to-gene mapping of relevant common complex traits (ATAC-Seq) (Submitter supplied) To investigate the role of the hypothalamus in complex traits, we generated ATAC-seq, RNA-seq, and Promoter Focused Capture C to gain insight into the gene regulatory arcitecture contacting promoters in an embryonic stem cell dervived model of hypothalamic neuron differentiation Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 14 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638302 Series Accession: GSE152090 ID: 200152090 19. Mapping the global chromatin connectivity network in colorectal cancer cell HCT116 and Oxaliplatin-resistant cell HCT116OxR (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL11154 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138657/ Series Accession: GSE138657 ID: 200138657 20. Mapping the global chromatin connectivity network in colorectal cancer cell HCT116 and Oxaliplatin-resistant cell HCT116OxR [ATAC-seq] (Submitter supplied) Numerous studies have highlighted the critical role of genetic and epigenetic modifications in the regulation of oxaliplatin resistance, but whether changes involving chromatin structure have not been fully investigated. We have integrated a variety of techniques to explore a comprehensive overview of chromatin changes in oxaliplatin-resistant processes. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA576683 Series Accession: GSE138656 ID: 200138656 21. BRD4 (Bromodomain-Containing Protein 4) Interacts with GATA4 (GATA Binding Protein 4) to Govern Mitochondrial Homeostasis in Adult Cardiomyocytes (Submitter supplied) In diseased organs, stress-activated signaling cascades alter chromatin, triggering broad shifts in transcription and cell state that exacerbate pathology. Fibroblast activation is a common stress response that worsens lung, liver, kidney and heart disease, yet its mechanistic basis remains poorly understood. Pharmacologic inhibition of the BET family of transcriptional coactivators alleviates cardiac dysfunction and associated fibrosis, providing a tool to mechanistically interrogate maladaptive fibroblast states and modulate their plasticity as a potential therapeutic approach. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 26 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA760319 Series Accession: GSE183343 ID: 200183343 22. Single cell chromatin profiling of human cardiogenesis development and iPS derived cardiac cell types (Submitter supplied) In this study, we map chromatin accessibility at single-cell resolution in the developing human heart and compare it with iPS derived cardiac cell types. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 12 Samples FTP download: GEO (TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181346/ Series Accession: GSE181346 ID: 200181346 23. Cell type-specific chromatin accessibility in kidney. (Submitter supplied) We applied scATAC-seq to construct a cell type-specific epigenetic landscape of kidney at single-cell resolution. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL18573 2 Samples FTP download: GEO (BED, CSV, RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA701255 Series Accession: GSE166547 ID: 200166547 24. Landscape of Monoallelic DNA Accessibility and Gene Regulatory Networks during Reprogramming to Naive Pluripotency and X Chromosome Reactivation [ATAC-seq] (Submitter supplied) X chromosome reactivation (XCR) represents a paradigm to study epigenetic regulation and the reversal of chromatin silencing, although how it is linked to the pluripotency gene regulatory network, pluripotency transcription factors (TFs) and chromatin remodelling processes remains largely unexplained. Several pluripotency TFs have been linked to XCR through binding to the long non-coding RNA gene Xist, but whether other regulatory elements are involved is unclear. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644350 Series Accession: GSE153844 ID: 200153844 25. Acsbg1 dependent mitochondrial fitness is a metabolic checkpoint for tissue Treg cell homeostasis (Submitter supplied) Regulatory T (Treg) cells, which belong to the CD4 T cell subset, are critical for immunological tolerance and immune homeostasis. Using a combination of RNA-seq and proteome analyses, we found that Acsbg1, a member of ACSL, is selectively expressed in Treg cells. Furthermore, we found that gene loci of Acsbg1 was epigenetically regulated and opened up by Smad2/3 in Treg cells. Deletion of Smad2/3 decreased expression levels of Acsbg1 compared to control T reg cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 29 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA761661 Series Accession: GSE183667 ID: 200183667 26. Stabilization of Pol II protein, orchestration of transcription cycles, and maintenance of enhancer landscape by general transcription regulator SPT5 [TT-seq] (Submitter supplied) Transcription machinery progression is governed by multitasking regulators including SPT5, an evolutionarily conserved factor implicated in virtually all transcriptional steps from enhancer activation to termination. Yet its mechanistic understanding in human cells remains incomplete. Here we utilize rapid degradation system and reveal crucial function of SPT5 in maintaining cellular and chromatin Pol II levels. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20795 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183506/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA761094 Series Accession: GSE183506 ID: 200183506 27. Stabilization of Pol II protein, orchestration of transcription cycles, and maintenance of enhancer landscape by general transcription regulator SPT5 [PRO-seq] (Submitter supplied) Transcription machinery progression is governed by multitasking regulators including SPT5, an evolutionarily conserved factor implicated in virtually all transcriptional steps from enhancer activation to termination. Yet its mechanistic understanding in human cells remains incomplete. Here we utilize rapid degradation system and reveal crucial function of SPT5 in maintaining cellular and chromatin Pol II levels. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20795 25 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA761095 Series Accession: GSE183505 ID: 200183505 28. Stabilization of Pol II protein, orchestration of transcription cycles, and maintenance of enhancer landscape by general transcription regulator SPT5 [ATAC-seq] (Submitter supplied) Transcription machinery progression is governed by multitasking regulators including SPT5, an evolutionarily conserved factor implicated in virtually all transcriptional steps from enhancer activation to termination. Yet its mechanistic understanding in human cells remains incomplete. Here we utilize rapid degradation system and reveal crucial function of SPT5 in maintaining cellular and chromatin Pol II levels. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA749769 Series Accession: GSE180844 ID: 200180844 29. Stabilization of Pol II protein, orchestration of transcription cycles, and maintenance of enhancer landscape by general transcription regulator SPT5 [RNA-seq] (Submitter supplied) Transcription machinery progression is governed by multitasking regulators including SPT5, an evolutionarily conserved factor implicated in virtually all transcriptional steps from enhancer activation to termination. Yet its mechanistic understanding in human cells remains incomplete. Here we utilize rapid degradation system and reveal crucial function of SPT5 in maintaining cellular and chromatin Pol II levels. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20795 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA749768 Series Accession: GSE180843 ID: 200180843 30. Stabilization of Pol II protein, orchestration of transcription cycles, and maintenance of enhancer landscape by general transcription regulator SPT5 [ChIP-seq] (Submitter supplied) Transcription machinery progression is governed by multitasking regulators including SPT5, an evolutionarily conserved factor implicated in virtually all transcriptional steps from enhancer activation to termination. Yet its mechanistic understanding in human cells remains incomplete. Here we utilize rapid degradation system and reveal crucial function of SPT5 in maintaining cellular and chromatin Pol II levels. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 28 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA749767 Series Accession: GSE180842 ID: 200180842 31. The Polycomb protein RING1B enables estrogen-mediated gene expression by promoting enhancer-promoter interaction and R-loop formation (Submitter supplied) Polycomb complexes have traditionally been prescribed roles as transcriptional repressors, though increasing evidence demonstrate they can also activate gene expression. However, the mechanisms underlying positive gene regulation mediated by Polycomb proteins are poorly understood. Here, we show that RING1B, a core component of Polycomb Repressive Complex 1, regulates enhancer-promoter interaction of the bona fide estrogen-activated GREB1 gene. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platform: GPL24676 76 Samples FTP download: GEO (BIGWIG, BW, RESULTS, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA727335 Series Accession: GSE173860 ID: 200173860 32. The NF-κB transcriptional footprint is essential for SARS-CoV-2 replication (Submitter supplied) SARS-CoV-2, the etiological agent of COVID-19, is characterized by a delay in Type I interferon (IFN-I)-mediated antiviral defenses alongside robust cytokine production. Here we investigate the underlying molecular basis for this imbalance and implicate virus-mediated activation of NF-κB in the absence of other canonical IFN-I-related transcription factors. Epigenetic and single cell transcriptomic analyses show a selective NF-κB signature that was most prominent in infected cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL30173 GPL18573 48 Samples FTP download: GEO (BW, CSV, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA764933 Series Accession: GSE184536 ID: 200184536 33. Chromatin states and genomic organization impact replication timing and local patterns [ATAC-seq] (Submitter supplied) Replication timing (RT) associates with genome architecture, while having a mixed relationship to histone marks. By profiling replication at high-resolution and systematically assessing broad and focused histone marks across cell cycle with and without genetic perturbation, we address the causal relationship between histone marks, their associated states and RT. Our approach identified four chromatin states, including a previously uncharacterized H3K36me2 state, that defined 97% of the mappable genome. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 16 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA736434 Series Accession: GSE176495 ID: 200176495 34. Chromatin states and genomic organization impact local replication features and timing [Repli-seq] (Submitter supplied) Replication timing (RT) control is linked to histone modifications (HMs) and genome architecture. However, HM landscape across cell cycle and its relationship with RT and chromatin modifiers have not been comprehensively assessed. Here we perform detailed replication profiling together with cell cycle profiling of multiple HMs, ATAC-seq, and gene expression. We classify 97% of the genome into four gross chromatin states, including a previously uncharacterized intergenic H3K36me2 state. more... Organism: Homo sapiens Type: Other Platform: GPL16791 28 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA733486 Series Accession: GSE175751 ID: 200175751 35. Chromatin states and genomic organization impact local replication features and timing [ChIP-seq] (Submitter supplied) Replication timing (RT) control is linked to histone modifications (HMs) and genome architecture. However, HM landscape across cell cycle and its relationship with RT and chromatin modifiers have not been comprehensively assessed. Here we perform detailed replication profiling together with cell cycle profiling of multiple HMs, ATAC-seq, and gene expression. We classify 97% of the genome into four gross chromatin states, including a previously uncharacterized intergenic H3K36me2 state. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 208 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175750/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA733485 Series Accession: GSE175750 ID: 200175750 36. ATAC seq from EGFP+ and EGFP- cells from postnatal day 3 striatum from GENSAT Nr4a1-EGFP mice (Submitter supplied) EGFP+ and EGFP- cells were sorted from dissected striatum from PND3 GENSAT Nr4a1-EGFP mice. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601456 Series Accession: GSE143727 ID: 200143727 37. CRISPR screens unveil signal hubs for nutrient licensing of T cell immunity [sgCcdc101 ATAC-seq] (Submitter supplied) Integrative system approaches uncover a three-tier system for the regulatory modules of nutrient signaling-dependent mTORC1 activation in primary T cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673707 Series Accession: GSE160593 ID: 200160593 38. Identification and validation of transcription factors and open chromatin regions defining the early postnatal striatal striosome (Submitter supplied) The basal ganglia, best known for processing information required for initiation of movement, is also part of a network which regulates other aspects of movement, reward, and cognition. The major output nucleus of the basal ganglia is the striatum, and its functions are dependent on neuronal compartmentation, including into striosomes and matrix. Striatal projection neurons are GABAergic medium spiny neurons (MSNs), all of which share basic molecular signatures but are subtyped by selective expression of receptors, neuropeptides, and other gene families. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 24 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA599576 Series Accession: GSE143276 ID: 200143276 39. PI3Kd coordinates transcriptional, epigenetic and metabolic changes to promote effector CD8+ T cells differentiation at the expense of memory. (Submitter supplied) Patients with Activated-PI3Kd Syndrome (APDS) present with sinopulmonary infections, lymphadenopathy and CMV and/or EBV viremia, yet why patients fail to clear certain viral infections remains incompletely understood. Using patient samples and a mouse model (Pik3cdE1020K/+ mice), we demonstrate that, upon activation, Pik3cdE1020K/+ CD8+ T cells exhibit exaggerated features of short-lived effectors both in vitro and post-viral infection, including increased Fas-mediated apoptosis due to sustained FoxO1 phosphorylation and derepression of FasL. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 52 Samples FTP download: GEO (BW, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA655676 Series Accession: GSE155799 ID: 200155799 40. ARID3a is Required for Erythrocyte Lineage Differentiation of Hemin Stimulated Human K562 Cells (Submitter supplied) Inhibition of ARID3a by shRNA in hemin-induced K562 cells results in significant decrease of erythroid specific lineage factors and alpha-globin genes. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 56 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544276 Series Accession: GSE131649 ID: 200131649 41. 4DNESCX7WHJ1 - sci-RNA-seq on mESCs differentiated to embryoid body (Submitter supplied) Mammalian development is associated with extensive changes in gene expression, chromatin accessibility, and nuclear structure. Here, we follow such changes associated with mouse embryonic stem cell differentiation and X inactivation by integrating, for the first time, allele-specific data obtained by high-throughput single-cell RNA-seq, ATAC-seq, and Hi-C. In differentiated cells, contact decay profiles, which clearly distinguish the active and inactive X chromosomes, reveal loss of the inactive X-specific structure at mitosis followed by a rapid reappearance, suggesting a bookkeeping mechanism. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA765362 Series Accession: GSE184602 ID: 200184602 42. 4DNESOUYRIO9 - sci-ATAC-seq on mESCs differentiated to embryoid body (Submitter supplied) Mammalian development is associated with extensive changes in gene expression, chromatin accessibility, and nuclear structure. Here, we follow such changes associated with mouse embryonic stem cell differentiation and X inactivation by integrating, for the first time, allele-specific data obtained by high-throughput single-cell RNA-seq, ATAC-seq, and Hi-C. In differentiated cells, contact decay profiles, which clearly distinguish the active and inactive X chromosomes, reveal loss of the inactive X-specific structure at mitosis followed by a rapid reappearance, suggesting a bookkeeping mechanism. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA765361 Series Accession: GSE184600 ID: 200184600 43. BET Inhibition Enhances TNF Mediated Anti-Tumor Immunity [ChIP-Seq, ATAC-Seq] (Submitter supplied) Targeting chromatin binding proteins and modifying enzymes can concomitantly affect tumor cell proliferation and survival, as well as enhance anti-tumor immunity and augment cancer immunotherapies. By screening a small molecule library of epigenetics-based therapeutics, BET bromodomain inhibitors (BETi) were identified as agents that sensitize tumor cells to the anti-tumor activity of CD8+ T-cells. BETi modulated tumor cells to be sensitized to the cytotoxic effects of the pro-inflammatory cytokine TNF. By preventing the recruitment of BRD4 to p65-bound cis-regulatory elements, BETi suppressed the induction of inflammatory gene expression, including the key NF-B target genes BIRC2 (cIAP1) and BIRC3 (cIAP2). Disruption of pro-survival NF-B signaling by BETi led to unrestrained TNF-mediated activation of the extrinsic apoptotic cascade and tumor cell death. Administration of BETi in combination with T-cell bispecific (TCB) antibodies increased bystander killing of tumor cells and enhanced tumor growth inhibition in vivo in a TNF-dependent manner. This novel epigenetic mechanism of immunomodulation may guide future use of BETi as adjuvants for immune oncology agents. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 17 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA765322 Series Accession: GSE184591 ID: 200184591 44. Single-cell landscape of nuclear configuration and gene expression during stem cell differentiation and X inactivation (Submitter supplied) Mammalian development is associated with extensive changes in gene expression, chromatin accessibility, and nuclear structure. Here, we follow such changes associated with mouse embryonic stem cell differentiation and X inactivation by integrating, for the first time, allele-specific data obtained by high-throughput single-cell RNA-seq, ATAC-seq, and Hi-C. In differentiated cells, contact decay profiles, which clearly distinguish the active and inactive X chromosomes, reveal loss of the inactive X-specific structure at mitosis followed by a rapid reappearance, suggesting a bookkeeping mechanism. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19057 19 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184554/ Series Accession: GSE184554 ID: 200184554 45. Selective Extracellular Signal-Regulated Kinase 1/2 (ERK1/2) Inhibition by the SCH772984 Compound Attenuates In Vitro and In Vivo Inflammatory Responses and Prolongs Survival in Murine Sepsis Models (Submitter supplied) This is an accompanying ATAC-seq data to the transcriptomic survey of RAW264.7 cells treated with ERK1/2 inhibitor SCH772984 upon 1hr, 4hrs and 24 hrs LPS challenge. The transcriptomic data are deposited in GEO under GSE179554. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA746487 Series Accession: GSE180085 ID: 200180085 46. Epigenetic Interaction between UTX and DNMT1 in brown adipocytes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL13112 GPL30197 GPL21103 12 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175608/ Series Accession: GSE175608 ID: 200175608 47. ATAC-seq analysis of chromatin accessibility across the entire genome in brown adipose tissues from UTXKO and their respective control mice fed high fat diet (Submitter supplied) We performed ATAC-seq assay on nuclei isolated from control and UTXKO mouse brown fat to delineate the role of UTX in setting chromatin accessibility. We analyzed the effects of UTX deficiency on a set of brown fat specific genes and observed reduced accessibility at ATAC-seq peaks and mRNA expression for many of these genes, including PRDM16 and PGC1a. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA733063 Series Accession: GSE175605 ID: 200175605 48. Maternally infection promotes offspring tissue-specific immune fitness (Submitter supplied) Mammals evolved in the face of pathogen exposure, the vast majority of these encounters resulting in asymptomatic or mild infections. How these constitutive exposures at specific developmental stages impact the host immune system for the long term remains poorly understood. Here we show that maternally restricted, mild infections, can have a permanent and tissue-specific impact on the offspring immunity. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 29 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667081 Series Accession: GSE158950 ID: 200158950 49. PKCl/i inhibition activates an ULK2-mediated interferon response to repress tumorigenesis [ATAC-Seq] (Submitter supplied) The interferon (IFN) pathway is critical for cytotoxic T cell activation, which is central to tumor immunosurveillance and successful immunotherapy. We demonstrate here that PKCl/i inactivation results in the hyper-stimulation of the IFN cascade and the enhanced recruitment of CD8+ T cells that impaired the growth of intestinal tumors. PKCl/i directly phosphorylates and represses the activity of ULK2, promoting its degradation through an endosomal microautophagy-driven ubiquitin-dependent mechanism. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA747048 Series Accession: GSE180223 ID: 200180223 50. Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [HiChIP] (Submitter supplied) The interplay between environmental and genetic factors plays a key role in the development of many autoimmune diseases. In particular, the Epstein-Barr virus (EBV) is an established contributor to multiple sclerosis, lupus, and other disorders. Previously, we demonstrated that the EBV nuclear antigen 2 (EBNA2) transactivating protein occupies up to half of the risk loci for a set of seven autoimmune disorders. more... Organism: Homo sapiens Type: Other Platform: GPL18573 6 Samples FTP download: GEO (HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA744916 Series Accession: GSE179755 ID: 200179755 51. Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [Bead array] (Submitter supplied) The interplay between environmental and genetic factors plays a key role in the development of many autoimmune diseases. In particular, the Epstein-Barr virus (EBV) is an established contributor to multiple sclerosis, lupus, and other disorders. Previously, we demonstrated that the EBV nuclear antigen 2 (EBNA2) transactivating protein occupies up to half of the risk loci for a set of seven autoimmune disorders. more... Organism: Homo sapiens Type: Genome variation profiling by SNP array; SNP genotyping by SNP array Platform: GPL30274 4 Samples FTP download: GEO (BIM, IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178131/ Series Accession: GSE178131 ID: 200178131 52. Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [RNA-seq] (Submitter supplied) The interplay between environmental and genetic factors plays a key role in the development of many autoimmune diseases. In particular, the Epstein-Barr virus (EBV) is an established contributor to multiple sclerosis, lupus, and other disorders. Previously, we demonstrated that the EBV nuclear antigen 2 (EBNA2) transactivating protein occupies up to half of the risk loci for a set of seven autoimmune disorders. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 6 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE177nnn/GSE177046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA736959 Series Accession: GSE177046 ID: 200177046 53. Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [ATAC-seq] (Submitter supplied) The interplay between environmental and genetic factors plays a key role in the development of many autoimmune diseases. In particular, the Epstein-Barr virus (EBV) is an established contributor to multiple sclerosis, lupus, and other disorders. Previously, we demonstrated that the EBV nuclear antigen 2 (EBNA2) transactivating protein occupies up to half of the risk loci for a set of seven autoimmune disorders. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 9 Samples FTP download: GEO (BED, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA736106 Series Accession: GSE176421 ID: 200176421 54. Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci [ChIP-seq] (Submitter supplied) The interplay between environmental and genetic factors plays a key role in the development of many autoimmune diseases. In particular, the Epstein-Barr virus (EBV) is an established contributor to multiple sclerosis, lupus, and other disorders. Previously, we demonstrated that the EBV nuclear antigen 2 (EBNA2) transactivating protein occupies up to half of the risk loci for a set of seven autoimmune disorders. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL20301 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA735570 Series Accession: GSE176232 ID: 200176232 55. Interferon drives hepatitis C virus scarring of the epigenome and creates targetable vulnerabilities following viral clearance [array] (Submitter supplied) Background & aims: Chronic hepatitis C viral (HCV) infection is a leading etiologic driver of cirrhosis and ultimately hepatocellular carcinoma (HCC). Of the approximately ~71 million individuals chronically infected with HCV, 10-20% are expected to develop severe liver complications in their lifetime. Epigenetic mechanisms including DNA methylation and histone modifications become profoundly disrupted in disease processes including liver disease. more... Organism: Homo sapiens Type: Methylation profiling by genome tiling array Platform: GPL21145 31 Samples FTP download: GEO (IDAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168185/ Series Accession: GSE168185 ID: 200168185 56. Clearance of chronic hepatitis C virus infection leaves scars on the epigenome driven by an interferon response and creates targetable vulnerabilities [seq] (Submitter supplied) Background & aims: Chronic hepatitis C viral (HCV) infection is a leading etiologic driver of cirrhosis and ultimately hepatocellular carcinoma (HCC). Of the approximately ~71 million individuals chronically infected with HCV, 10-20% are expected to develop severe liver complications in their lifetime. Epigenetic mechanisms including DNA methylation and histone modifications become profoundly disrupted in disease processes including liver disease. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL24676 52 Samples FTP download: GEO (BED, SF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA706404 Series Accession: GSE168178 ID: 200168178 57. HNF4A defines tissue-specific circadian rhythms by beaconing BMAL1::CLOCK chromatin binding and shaping rhythmic chromatin landscape (Submitter supplied) ChIP-seqs of BMAL1, HNF4A, FOXA2, H3K4me1, and H3K27ac were profiled in mouse liver tissues upon Hnf4a or Bmal1 knockout. BMAL1, H3K4me1, and H3K27ac ChIP-seq were profiled in U2OS cells ectopically expressing HNF4A. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL21103 83 Samples FTP download: GEO (BED, BROADPEAK, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661328 Series Accession: GSE157452 ID: 200157452 58. Multi-modal characterization of chromatin architecture from 24 hpf whole zebrafish embryos (Submitter supplied) DNA accessibility of cis regulatory elements (CREs) dictates transcriptional activity and drives cell differentiation during development. To obtain a more comprehensive view of CRE dynamics, we applied single-cell combinatorial indexing ATAC-seq (sci-ATAC-seq) to whole 24hpf stage zebrafish embryos thereby measuring DNA accessibility in ~23,000 single cells. We developed two solutions to computational challenges in analyzing single-cell accessibility maps: 1) selection of informative genome segments, and 2) genome-wide classification of both cell-type-specific and multi-cell-type accessibility dynamics. more... Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL20828 GPL21741 21 Samples FTP download: GEO (BED, BW, MTX, NARROWPEAK, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA639281 Series Accession: GSE152423 ID: 200152423 59. Epstein-Barr virus nuclear antigen 2 (EBNA2) extensively rewires the human chromatin landscape at autoimmune risk loci (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Genome variation profiling by SNP array; SNP genotyping by SNP array 5 related Platforms 29 Samples FTP download: GEO (BIM, BW, HIC, IDAT, NARROWPEAK, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA624139 Series Accession: GSE148396 ID: 200148396 60. A single-cell atlas of chromatin accessibility in the human genome (Submitter supplied) Current catalogs of regulatory sequences in the human genome are still incomplete and lack cell type resolution. To profile the activity of gene regulatory elements in diverse cell types and tissues in the human body, we applied single-cell chromatin accessibility assays to 30 adult human tissue types from multiple donors. We integrated these datasets with single-cell chromatin accessibility data from 15 fetal tissue types to reveal the status of open chromatin for approximately 1.2 million candidate cis-regulatory elements (cCREs) in 222 distinct cell types comprised of >1.3 million nuclei. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL20301 72 Samples FTP download: GEO (BED, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA764714 Series Accession: GSE184462 ID: 200184462 61. Scalable Production of Mouse Erythroid Cells using an in vitro Embryoid Body differentiation System [ChIP-Seq] (Submitter supplied) Mouse embryonic stem (mES) cells can be manipulated ex-vivo to recapitulate the process of erythropoiesis, whereby multipotential haematopoietic stem cells undergo lineage specification, differentiation and maturation to produce functional erythroid cells. Although very useful for identifying specific progenitors and precursors, this cell system has not been fully exploited as a source of cells to analyse erythropoiesis, compared with primary erythroid cells or immortalised cell lines. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA764671 Series Accession: GSE184434 ID: 200184434 62. Scalable Production of Mouse Erythroid Cells using an in vitro Embryoid Body differentiation System [Capture-C] (Submitter supplied) Mouse embryonic stem (mES) cells can be manipulated ex-vivo to recapitulate the process of erythropoiesis, whereby multipotential haematopoietic stem cells undergo lineage specification, differentiation and maturation to produce functional erythroid cells. Although very useful for identifying specific progenitors and precursors, this cell system has not been fully exploited as a source of cells to analyse erythropoiesis, compared with primary erythroid cells or immortalised cell lines. more... Organism: Mus musculus Type: Other Platforms: GPL16417 GPL19057 12 Samples FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA764670 Series Accession: GSE184432 ID: 200184432 63. Scalable Production of Mouse Erythroid Cells using an in vitro Embryoid Body differentiation System [ATAC-Seq] (Submitter supplied) Mouse embryonic stem (mES) cells can be manipulated ex-vivo to recapitulate the process of erythropoiesis, whereby multipotential haematopoietic stem cells undergo lineage specification, differentiation and maturation to produce functional erythroid cells. Although very useful for identifying specific progenitors and precursors, this cell system has not been fully exploited as a source of cells to analyse erythropoiesis, compared with primary erythroid cells or immortalised cell lines. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184429/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA764668 Series Accession: GSE184429 ID: 200184429 64. A MYT1L Syndrome mouse model recapitulates patient phenotypes and reveals altered brain development due to disrupted neuronal maturation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 57 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173943/ Series Accession: GSE173943 ID: 200173943 65. A MYT1L Syndrome mouse model recapitulates patient phenotypes and reveals altered brain development due to disrupted neuronal maturation [RNA-Seq] (Submitter supplied) Human genetics have defined a new autism-associated syndrome caused by loss-of-function mutations in MYT1L, a transcription factor known for enabling fibroblast-to-neuron conversions. However, how MYT1L mutation causes autism, ADHD, intellectual disability, obesity, and brain anomalies is unknown. Here, we develop a mouse model of this syndrome. Physically, Myt1l haploinsufficiency causes obesity, white-matter thinning, and microcephaly in the mice, mimicking clinical phenotypes. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL24247 28 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA727564 Series Accession: GSE173926 ID: 200173926 66. A MYT1L Syndrome mouse model recapitulates patient phenotypes and reveals altered brain development due to disrupted neuronal maturation [ATAC-Seq] (Submitter supplied) Human genetics have defined a new autism-associated syndrome caused by loss-of-function mutations in MYT1L, a transcription factor known for enabling fibroblast-to-neuron conversions. However, how MYT1L mutation causes autism, ADHD, intellectual disability, obesity, and brain anomalies is unknown. Here, we develop a mouse model of this syndrome. Physically, Myt1l haploinsufficiency causes obesity, white-matter thinning, and microcephaly in the mice, mimicking clinical phenotypes. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 29 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA726218 Series Accession: GSE173588 ID: 200173588 67. Single-cell ATAC-seq of developing cortical interneurons. (Submitter supplied) Single-cell ATAC-sequencing of cortical GABAergic interneurons to characterize the chromatin landscapes of these cells at several timepoints across development - from their origins in the ganglionic eminences, upon migration to the cortex, settling in cortical laminae, and through maturation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 13 Samples FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA693000 Series Accession: GSE165031 ID: 200165031 68. Inner nuclear protein Matrin-3 coordinates cell differentiation by stabilizing chromatin architecture [ATAC-Seq] (Submitter supplied) Precise control of gene expression during differentiation relies on the interplay of chromatin and nuclear structure. Despite an established contribution of nuclear membrane proteins to developmental gene regulation, little is known regarding the role of inner nuclear proteins. Here we demonstrate that loss of the nuclear scaffolding protein Matrin-3 (Matr3) in erythroid cells leads to morphological and gene expression changes characteristic of accelerated maturation, as well as broad alterations in chromatin organization similar to those accompanying differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA751090 Series Accession: GSE181230 ID: 200181230 69. B-cell derived macrophage in mouse and human breast cancer macrophage (Submitter supplied) Cancer actively uses B cells to promote its progression and metastasis. For example, it causes accumulation of bone marrow (BM) B-cell precursors in spleen to convert into immunosuppressive Breg cells. Here, we provide evidence that cancer also coopts differentiation BM CSF1R+ Pax5Lo B-cell precursors to generate macrophages (termed B-MF cells). To do this, cancer uses CSF1 to trigger Csf1r signaling and downregulate PAX5 in B-cell precursors by activating FOXO1. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL24247 GPL17021 20 Samples FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA740180 Series Accession: GSE178716 ID: 200178716 70. Phloem tissue specific genome-wide open chromatin state in Arabidopsis thaliana. (Submitter supplied) Transformation of undifferentiated stem cells into cells with special functions is central for organismal development. The phloem tissue mediates long-distance transport of energy metabolites along plant bodies and is characterized by an exceptional degree of cellular specialization. How the phloem-specific developmental program is implemented is, however, unknown. Here we reveal that the ubiquitously expressed PHD-finger protein OBERON3 (OBE3) and the phloem-specific SUPPRESSOR OF MAX2 1-LIKE 5 (SMXL5) protein form a central module for establishing phloem identity in Arabidopsis thaliana (Arabidopsis). more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24270 8 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA764192 Series Accession: GSE184344 ID: 200184344 71. Early anteroposterior regionalization of human neural crest is shaped by a pro-mesodermal factor (Submitter supplied) We employed ATAC-seq to interrogate the chromatin accessibility landscape in neuromesodermal progenitor (NMP)-like cells derived from a human embryonic stem cell (hESC) line engineered to exhibit shRNA-mediated, tetracycline (Tet)-inducible knockdown of TBXT expression. TBXT shRNA hESCs were differentiated toward NMPs following a three day treatment in the presence of WNT and FGF agonists in the presence or absence of tetracycline and +/-Tet treated samples were harvested and analysed by ATAC-seq. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE184nnn/GSE184227/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA763606 Series Accession: GSE184227 ID: 200184227 72. Epithelial memory of resolved inflammation limits tissue damage while promoting pancreatic tumorigenesis [ATAC-seq] (Submitter supplied) Inflammation is a major risk factor for pancreatic ductal adenocarcinoma (PDAC). When occurring in the context of pancreatitis, mutations of KRAS accelerate tumor development. We discovered that long after its complete resolution, a transient inflammatory event primes pancreatic epithelial cells to subsequent transformation by oncogenic KRAS. Upon recovery from acute inflammation, epithelial cells of the pancreas display an enduring adaptive response associated with sustained transcriptional and epigenetic reprogramming. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL21273 7 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA747000 Series Accession: GSE180192 ID: 200180192 73. Chromatin-accessibility estimation from single-cell ATAC data with scOpen (Submitter supplied) We propose a computational method for quantifying the open chromatin status of regulatory regions from single cell ATAC-seq experiments. scOpen, which is based on positive-unlabeled learning of matrices, is able to estimate the probability that a region is open at a given cell mitigating the sparsity of scATAC-seq matrices. We demonstrate that scOpen improves all down-stream analysis steps of scATAC-seq data as clustering, visualization, detection of transcription factors and chromatin conformation in several scATAC-seq data. Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL19057 12 Samples FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587712 Series Accession: GSE139950 ID: 200139950 74. PD-L1 blockade-induced temporal single cell dynamics in triple negative breast cancer (Submitter supplied) Despite the progress in immunotherapies, leading immune checkpoint inhibitors are only effective in a subset of patients. The efficacy of atezolizumab, an anti-PD-L1 antibody, in triple negative breast cancer (TNBC) is limited for unknown reasons. We utilized single-cell RNA- and ATAC-sequencing to examine the dynamics of immune cells in metastatic TNBC patients treated with paclitaxel or its combination with atezolizumab. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 83 Samples FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169246/ Series Accession: GSE169246 ID: 200169246 75. rRNA Biogenesis Regulates Mouse 2C-like State by 3D Structure Reorganization of Peri-Nucleolar Heterochromatin [ATAC-seq] (Submitter supplied) Nucleolus is the organelle for ribosome biogenesis and sensing various types of stress. Its role in regulating stem cell fate is unclear. Here, we present multiple lines of evidence that nucleolar stress induced by interfering rRNA biogenesis can drive two-cell stage embryo-like (2C-like) transcriptional program and induce an expanded 2C-like cell population in mouse embryonic stem (mES) cells. Mechanistically, the liquid-liquid phase separation (LLPS) mediated by rRNA and nucleolar proteins maintains the formation of peri-nucleolar heterochromatin (PNH). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA698994 Series Accession: GSE166022 ID: 200166022 76. LIN28 Promotes Nucleolar/Ribosomal Functions to Repress the 2C-like Transcriptional Program in Pluripotent Stem Cells [ATAC-seq] (Submitter supplied) LIN28 is an RNA binding protein with important roles in early embryo development by interaction with let-7 microRNA precursors or mRNAs in cytoplasm. Here, we showed novel roles of LIN28 within the nucleolus in cultured pluripotent stem cells (PSCs). We found Lin28 deficiency led to activation of the 2-cell (2C)-like transcriptional program and repression of the ES cell program. Mechanistically, LIN28 maintains a peri-nucleolar heterochromatin-residing complex to repress 2C activator Dux via association with NCL and TRIM28. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689562 Series Accession: GSE164130 ID: 200164130 77. Identification of direct transcriptional targets of Nfatc2 that promote β-cell proliferation in human islets (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing Platforms: GPL16791 GPL24676 GPL20301 52 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158499/ Series Accession: GSE158499 ID: 200158499 78. Identification of direct transcriptional targets of Nfatc2 that promote β-cell proliferation in human islets (ATAC-seq) (Submitter supplied) The transcription factor Nfatc2 is a potent β-cell mitogen in mouse and human islets, however, the direct genomic targets that mediate the mitogenic effects have not been identified. We expressed a constitutively active form of Nfatc2, and the closely related Nfatc1, in human islets and identified ~5,600 differentially expressed genes. Nfatc2 binding sites in human islets were identified via ChIP-seq, yielding ~8,600 high-confidence peaks. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 6 Samples FTP download: GEO (BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA665470 Series Accession: GSE158495 ID: 200158495 79. Effects of ambient temperature on DNA accessibility in nuclear chromatin of Drosophila S2R+ cells [ATAC-seq] (Submitter supplied) Cells in ectothermic organisms often maintain homeostatic function over a considerable range of ambient temperatures. However, as temperature has pronounced effects on all biological processes, but not necessarily in a uniform manner on each of the myriad of distinct processes, cellular acclimation to ambient temperature change is predicted to involve complex regulation, including the transcriptional level. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17275 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA668073 Series Accession: GSE159221 ID: 200159221 80. ATAC-seq of germinal center B cell-derived cell lines after POU2F2 or POU2AF1 knockdown (Submitter supplied) ATAC-seq in OCI-Ly7 and SUDHL4 cell lines after CRISPRi knockdown of OCT2 (POU2F2) or OCA-B (POU2AF1), or control non-targeting sgRNAs. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 15 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA762047 Series Accession: GSE183803 ID: 200183803 81. Chromatin architecture of B cell development during the humoral immune response (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL18573 GPL16791 GPL20301 87 Samples FTP download: GEO (BW, MCOOL, NARROWPEAK, SF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183806/ Series Accession: GSE183806 ID: 200183806 82. Enhancer reactivation mediates adaptive resistance to FGFR inhibitors in triple-negative breast cancer [ChIP_seq] (Submitter supplied) A subset of triple negative breast cancers (TNBC) are characterized by genetic alterations in fibroblast growth factor receptors (FGFR) including amplifications, activating mutations or gene fusions. However, despite this genetic evidence of FGFR-dependency, FGFR inhibitors have shown only limited clinical efficacy in TNBC, suggesting the presence of intrinsic or adaptive resistance mechanisms. Using genome-wide CRISPR screens, we found that resistance to FGFR inhibition is mediated by activation of the mTORC1 and YAP pathways. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL24676 40 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA705892 Series Accession: GSE168024 ID: 200168024 83. SPOP mutation reshapes chromatin landscape and transcriptional response to androgens [RNA-seq] (Submitter supplied) To define the epigenomic response to AR activation, we employed the 3D organoid model of murine prostate tissue. Control and SPOP-mutant prostate organoids were stimulated with 10 nM dihydrotestosterone (DHT) or vehicle. Next, we performed the transcriptomic analysis (mRNA-seq) together with profiling of the accessibility landscape (ATAC-seq), transcription factor (AR, and FOXA1) binding and H3K4me2 modified nucleosomes. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630382 Series Accession: GSE149868 ID: 200149868 84. SPOP mutation reshapes chromatin landscape and transcriptional response to androgens [ATAC-seq] (Submitter supplied) To define the epigenomic response to AR activation, we employed the 3D organoid model of murine prostate tissue. Control and SPOP-mutant prostate organoids were stimulated with 10 nM dihydrotestosterone (DHT) or vehicle. Next, we performed the transcriptomic analysis (mRNA-seq) together with profiling of the accessibility landscape (ATAC-seq), transcription factor (AR, and FOXA1) binding and H3K4me2 modified nucleosomes. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL30172 22 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA606774 Series Accession: GSE145332 ID: 200145332 85. SPOP mutation reshapes chromatin landscape and transcriptional response to androgens [ChIP-seq] (Submitter supplied) To define the epigenomic response to AR activation, we employed the 3D organoid model of murine prostate tissue. Control and SPOP-mutant prostate organoids were stimulated with 10 nM dihydrotestosterone (DHT) or vehicle. Next, we performed the transcriptomic analysis (mRNA-seq) together with profiling of the accessibility landscape (ATAC-seq), transcription factor (AR, and FOXA1) binding and H3K4me2 modified nucleosomes. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 40 Samples FTP download: GEO (BED, BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA606290 Series Accession: GSE145196 ID: 200145196 86. Hairless regulates heterochromatin maintenance and muscle stem cell function as a histone demethylase antagonist (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132256/ Series Accession: GSE132256 ID: 200132256 87. Hairless regulates heterochromatin maintenance and muscle stem cell function as a histone demethylase antagonist (ChIPseq, ATACseq) (Submitter supplied) Skeletal muscle possesses remarkable regenerative ability owing to the resident muscle stem cells (MuSCs). A prominent feature of quiescent MuSCs is a high content of heterochromatin. However, little is known about the mechanisms by which heterochromatin is maintained in MuSCs. We found that the mammalian Hairless (Hr) gene is expressed in quiescent MuSCs. Using a mouse model in which Hr can be specifically ablated in MuSCs, we demonstrate that Hr expression is critical for MuSC function and muscle regeneration. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA546535 Series Accession: GSE132220 ID: 200132220 88. Release of Notch signaling coordinated by inflammation confers cross-compartment differentiation plasticity during alveolar regeneration (Submitter supplied) While the acquisition of cellular plasticity in adult stem cells is essential for rapid restoration after tissue injury, little is known about the underlying molecular mechanisms governing this process. Here, we reveal that Notch signaling is a pivotal determinant conferring cross-compartment differentiation plasticity of airway secretory cells. Temporal Notch inhibition in secretory cells is required for alveolar differentiation upon injury, which is mediated by IL-1β-dependent modulation of Jag1/2 expression in ciliated cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21103 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA643638 Series Accession: GSE153677 ID: 200153677 89. Regulatory elements in a Transcriptional Network Orchestrating Regional Patterning of Cortical Progenitors (Submitter supplied) To map enhancers involved in regional patterning of cortical progenitors, we performed TF ChIP for patterning transcription factors as well as assays for epigenomic marks and DNA accessibility in VZ cells purified from wild-type and patterning mutant mice. This integrated approach identified a cortical Regionalization TF network and VZ enhancers involved in cortical regional patterning. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 70 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA759238 Series Accession: GSE183130 ID: 200183130 90. Chronic stress primes innate immune responses in mice and humans (Submitter supplied) Psychological stress (PS) is associated with systemic inflammation and accelerates inflammatory disease progression (e.g., atherosclerosis). The mechanisms underlying stress-mediated inflammation and future health risk are poorly understood. Monocytes are key in sustaining systemic inflammation, and recent studies demonstrate they maintain memory of inflammatory insults, leading to a heightened inflammatory response upon rechallenge. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL17021 55 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167536/ Series Accession: GSE167536 ID: 200167536 91. Smarca4 inactivation promotes lineage-specific transformation and early metastatic features in the lung [ATAC-seq] (Submitter supplied) SMARCA4 (BRG1) encodes for one of two mutually-exclusive ATPases present in mammalian SWI/SNF chromatin remodeling complexes, and is among the most frequently mutated genes in human lung adenocarcinoma. Despite its prevalence, the functional consequences of SMARCA4 mutation on tumor initiation, progression and chromatin regulation in lung cancer remains poorly understood. Using genetically engineered mouse models, patient-derived xenografts, and single-cell epigenomic profiling, we demonstrate that loss of Smarca4 sensitizes CCSP+ cells within the lung in a cell-type dependent fashion to malignant transformation and tumor progression, resulting in highly advanced dedifferentiated tumors and increased metastatic incidence. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692212 Series Accession: GSE164857 ID: 200164857 92. Smarca4 inactivation promotes lineage-specific transformation and early metastatic features in the lung [scATAC-seq] (Submitter supplied) SMARCA4 (BRG1) encodes for one of two mutually-exclusive ATPases present in SWI/SNF chromatin remodeling complexes, and is among the most frequently mutated genes in human lung adenocarcinoma. Despite its prevalence, the functional consequences of SMARCA4 alterations on lung cancer initiation and progression remain poorly understood. Using genetically engineered mouse models, patient-derived xenografts, and single-cell epigenomic profiling, we demonstrate that loss of Smarca4 sensitizes CCSP+ cells within the lung to malignant transformation and tumor progression, resulting in highly advanced dedifferentiated tumors and increased metastatic incidence. more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24676 GPL24247 19 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA679823 Series Accession: GSE161920 ID: 200161920 93. Morc3 silences endogenous retroviruses by enabling Daxx-mediated H3.3 incorporation [ATAC-seq] (Submitter supplied) Endogenous retroviruses (ERVs) comprise a significant portion of mammalian genomes. Although, specific ERV loci feature regulatory roles for host gene expression, most ERV integrations are transcriptionally repressed by Setdb1 mediated H3K9me3 and DNA methylation. However, the protein network which regulates deposition of these chromatin modifications is still incompletely understood. Here, we performed a genome-wide sgRNA screen for genes involved in ERV silencing and identified the GHKL ATPase protein Morc3 as top scoring hit. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 19 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA670919 Series Accession: GSE159932 ID: 200159932 94. Genome wide analysis of cis-regulatory elements reveals gene regulatory networks in metabolic adaptation of cavefish (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Astyanax mexicanus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL27684 GPL24492 38 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153052/ Series Accession: GSE153052 ID: 200153052 95. Genome-wide maps of open chromatin in liver cells of Astyanax mexicanus [ATAC-seq] (Submitter supplied) Organisms adapt to and survive in environments with varying nutrient availability. Cis-regulatory changes play important roles in adaptation and phenotypic evolution. To what extent cis-regulatory elements contribute to metabolic adaptation is less understood. Here we have utilized a unique vertebrate model, Astyanax mexicanus, that survives in nutrient rich surface and nutrient deprived cave water to uncover gene regulatory networks in metabolic adaptation. more... Organism: Astyanax mexicanus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL27684 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641513 Series Accession: GSE153048 ID: 200153048 96. ATAC-seq on DHT treated/untreated prostate cell line RWPE1 (Submitter supplied) Precise gene regulation is needed for the correct differentiation and function of cells. This is especially important when putting cells through stimuli that would change their characteristics. To understand the changes in chromatin accessibility of prostate cells when stimulating them with testosterone, we performed the ATAC-seq (Assay for Transposase Accessible Chromatin using sequencing). We have worked with the normal epithelial prostate cell line RWPE1, an heterogenous cell line composed of two subpopulations: WPE-stem (stem cell phenotype) and WPE-int (intermediate cellular subtype) and treated it with DHT. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA760301 Series Accession: GSE183330 ID: 200183330 97. Delineating Chromatin Accessibility Re-patterning at Single Cell Level during Early Stage of Direct Cardiac Reprogramming (Submitter supplied) Direct conversion of cardiac fibroblast into functional induced cardiomyocytes by forced expression of three cardiac transcription factors, Mef2c, Gata4, and Tbx5, holds great promise for regenerative medicine. Cardiac reprogramming consists of waves of transcription remodeling events, including the fast acquisition of cardiac program and the gradual loss of fibroblast program. However, how this transcription remodeling was driven by the upstream chromatin landscape is still unclear. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 2 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA719845 Series Accession: GSE171525 ID: 200171525 98. Chd4 ensures stem cell lineage fidelity during skeletal muscle regeneration (Submitter supplied) The chromatin remodeler Chd4, a member of the nucleosome remodeling and deacetylase (NuRD) repressive complex, is essential for the expansion and regenerative functions of satellite cells. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 24 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA744544 Series Accession: GSE179683 ID: 200179683 99. ATAC-seq and multi-omics analysis of human liver highlight a hepatocyte-specific enhancer for ACOT1 regulating the balance of acyl-CoA and free fatty acids in type 2 diabetes. (Submitter supplied) ATAC-seq (assay for transposase-accessible chromatin followed by sequencing) is widely used to decode chromatin accessibility. Here we performed high-sensitive ATAC-seq in 9 human liver samples from normal and T2D donors, and identified a set of differentially accessible regions (DARs). DARs were overlapped with publicly available CREs databases and integrated with multi-omics data to identify candidates for further experimental validations. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 22 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA725009 Series Accession: GSE173277 ID: 200173277 100. Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL24676 212 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165709/ Series Accession: GSE165709 ID: 200165709 101. Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (RNA-Seq) (Submitter supplied) Persons living with HIV (PLWH) are at increased risk of tuberculosis (TB). HIV-associated TB is mainly the result of recent infection with Mycobacterium tuberculosis (Mtb) followed by rapid progression to disease. Alveolar macrophages (AM) are the first cells of the innate immune system that engage Mtb, but how HIV and antiretroviral therapy (ART) impact on the anti-mycobacterial response of AM is not known. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 100 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA695511 Series Accession: GSE165708 ID: 200165708 102. Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (ChIP-Seq) (Submitter supplied) Persons living with HIV (PLWH) are at increased risk of tuberculosis (TB). HIV-associated TB is mainly the result of recent infection with Mycobacterium tuberculosis (Mtb) followed by rapid progression to disease. Alveolar macrophages (AM) are the first cells of the innate immune system that engage Mtb, but how HIV and antiretroviral therapy (ART) impact on the anti-mycobacterial response of AM is not known. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 30 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA695510 Series Accession: GSE165705 ID: 200165705 103. Epigenetic impairment and blunted transcriptional response to Mycobacterium tuberculosis of alveolar macrophages from persons living with HIV (ATAC-Seq) (Submitter supplied) Persons living with HIV (PLWH) are at increased risk of tuberculosis (TB). HIV-associated TB is mainly the result of recent infection with Mycobacterium tuberculosis (Mtb) followed by rapid progression to disease. Alveolar macrophages (AM) are the first cells of the innate immune system that engage Mtb, but how HIV and antiretroviral therapy (ART) impact on the anti-mycobacterial response of AM is not known. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 82 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA695509 Series Accession: GSE165703 ID: 200165703 104. Comprehensive genome wide analysis of Satb2 function during vertebrate embryogenesis (Submitter supplied) In this study, we have addressed the involvement of chromatin organizer SATB2 in orchestrating zygotic genome activation and neural crest specification during zebrafish embryogenesis. Integrative analysis of transcriptome, genome-wide occupancy and chromatin accessibility reveals contrasting molecular activities of maternally deposited and zygotically synthesized Satb2. Comparative analysis with mouse embryos highlighted conserved molecular mechansisms for Satb2 during neural crest specification. Organism: Danio rerio; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other 4 related Platforms 75 Samples FTP download: GEO (BED, BW, H5, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183002/ Series Accession: GSE183002 ID: 200183002 105. Chromatin organizer SATB1 controls the cell identity of CD4+ CD8+ double-positive thymocytes by compacting super-enhancers (Submitter supplied) CD4+ and CD8+ double-positive (DP) thymocytes are at a critical stage during the T cell development in thymus. DP cells rearrange the T cell receptor gene Tcra to generate T cell receptors with TCR. Then DP cells differentiate into CD4 or CD8 single-positive (SP) thymocytes, Regulatory T cells, or invariant nature kill T cells (iNKT) according to the TCR signal. Chromatin organizer SATB1 is highly expressed in DP cells and plays an essential role in regulating Tcra rearrangement and differentiation of DP cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL21273 48 Samples FTP download: GEO (BED, BEDGRAPH, BW, CSV, HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE182nnn/GSE182995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA758699 Series Accession: GSE182995 ID: 200182995 106. Epigenetic dynamics shaping melanophore and iridophore cell fate in zebrafish (Submitter supplied) We charted the global changes in the epigenetic landscape, including DNA methylation and chromatin accessibility, during neural crest differentiation into melanophores and iridophores in zebrafish to identify epigenetic determinants shaping cell type-specific gene expression. Motif enrichment in the epigenetically dynamic regions revealed putative transcription factors that might be responsible for driving pigment cell identity. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL20828 24 Samples FTP download: GEO (BEDGRAPH, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA751418 Series Accession: GSE181287 ID: 200181287 107. Multiomics of reprogramming fibroblasts enhanced by siAJSZ (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL16791 22 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183124/ Series Accession: GSE183124 ID: 200183124 108. scATAC-seq of human dermal fibroblasts reprogrammed with MGT (Submitter supplied) scATAC-seq experiments were performed with control (untreated) HDFs, MGT_siControl HDFs, and MGT_siAJSZ HDFs. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE183nnn/GSE183121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA759228 Series Accession: GSE183121 ID: 200183121 109. 5-hydroxymethylcytosine is required for terminal differentiation of Purkinje neurons (Submitter supplied) Principal neurons in the mammalian brain exit cell cycle and execute a complex and prolonged differentiation program that continues into early adult life. Although high levels of 5-hydroxymethylcytosine (5hmC) accumulate in neurons, it is not known whether 5hmC can serve as an intermediate in DNA demethylation in postmitotic neurons. Here we report high resolution mapping of DNA methylation and hydroxymethylation, chromatin accessibility, and activating and repressive histone marks in developing postmitotic Purkinje cells (PCs). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL19057 42 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA700864 Series Accession: GSE166423 ID: 200166423 110. ­De novo DNA methylation suppresses aberrant fate trajectory during epiblast transition [ATAC-seq] (Submitter supplied) Genome remethylation is essential for mammalian development. Here we examined cell fate in the absence of de novo DNA methyltransferases. We found that embryonic stem (ES) cells deficient for Dnmt3a and Dnmt3b are rapidly eliminated from chimaeras. Pluripotency progression is derailed towards extra-embryonic trophoblast. This aberrant trajectory is propelled by failure to methylate and suppress expression of Ascl2 during formative transition. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA664950 Series Accession: GSE158344 ID: 200158344 111. Mechanistic dissection of dominant AIRE mutations in mouse models reveals evidence for AIRE auto-regulation [ATAC-seq] (Submitter supplied) Using mouse models of several recessive and putative dominant-negative patient mutations we were able to dissect the mechanisms that underlie the recessive and dominant-negative capacities of the corresponding AIRE mutants, including a newly identified dominant-negative variant C446G We also identify an auto-regulatory mechanism by which AIRE negatively modulates its own expression. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BED, BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA634368 Series Accession: GSE151011 ID: 200151011 112. STAT3 promotes melanoma metastasis by CEBP-induced repression of the MITF pigmentation pathway (Submitter supplied) Metastatic melanoma is hallmarked by its ability to switch oncogenic MITF expression. Here we tested the impact of STAT3 on melanoma onset and progression in association with MITF expression levels. We established a mouse melanoma model for deleting Stat3 specifically in melanocytes with specific expression of human hyperactive NRASQ61K in an Ink4a deficient background. Mice with tissue specific Stat3 deletion showed an early onset of disease, but displayed significantly diminished lung metastasis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BIGWIG, CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489483 Series Accession: GSE119540 ID: 200119540 113. Analysis of accessible chromatin regions in response to dexamethasone mediated-atrophy in mouse satellite cells [ATAC] (Submitter supplied) We analyzed the accessible chromatin regions globally in response to dexamethasone in primary mouse satellite cells (SCs) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 4 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165070/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA693182 Series Accession: GSE165070 ID: 200165070 114. Leveraging the Mendelian Disorders of the Epigenetic Machinery to Systematically Map Functional Epigenetic Variation - RNA-seq (Submitter supplied) The Mendelian Disorders of the Epigenetic Machinery (MDEMs) have emerged as a class of Mendelian disorders caused by loss-of-function variants in epigenetic regulators. Although each MDEM has a different causative gene, they exhibit several overlapping disease manifestations. Here, we hypothesize that this phenotypic convergence is a consequence of common abnormalities at the epigenomic level, which directly or indirectly lead to downstream convergence at the transcriptomic level. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 27 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA680794 Series Accession: GSE162176 ID: 200162176 115. Leveraging the Mendelian Disorders of the Epigenetic Machinery to Systematically Map Functional Epigenetic Variation - ATAC-seq (Submitter supplied) The Mendelian Disorders of the Epigenetic Machinery (MDEMs) have emerged as a class of Mendelian disorders caused by loss-of-function variants in epigenetic regulators. Although each MDEM has a different causative gene, they exhibit several overlapping disease manifestations. Here, we hypothesize that this phenotypic convergence is a consequence of common abnormalities at the epigenomic level, which directly or indirectly lead to downstream convergence at the transcriptomic level. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 36 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA680793 Series Accession: GSE162174 ID: 200162174 116. 3D genome structural changes associated with melanoma constricted migration (ATAC-Seq) (Submitter supplied) We investigate the effect of constricted migration (using transwell assays with 5-μm or 12-μm in diamter) on the organization of the 3D genome in melanoma cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21290 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601213 Series Accession: GSE143674 ID: 200143674 117. Aberrant chromatin landscape upon loss of the H3.3 chaperone Daxx leads to Pu.1-mediated neutrophilia and inflammation [ATAC-Seq] (Submitter supplied) The lymphoid and myeloid lineages are in equilibrium during steady-state hematopoiesis. Tilting hematopoiesis towards innate immunity has been linked to inflammation and may predispose to myeloproliferative disease. Although epigenetic players have been implicated in the control of hematopoiesis and pathogenesis of blood neoplasms, the role of chromatin-based mechanisms in regulating the lymphoid/myeloid balance remains only partially understood. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24247 GPL18480 24 Samples FTP download: GEO (BED, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA488721 Series Accession: GSE119306 ID: 200119306 118. Hepatocyte-Specific Genomic Profiling of the Hepatic Fasting Response (Submitter supplied) We generated profiles of fasting-induced changes in the genomic landscapes of in vivo hepatocytes using the INTACT methodology. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA753926 Series Accession: GSE181937 ID: 200181937 119. Temporal regulation of neuronal remodeling by a chromatin anti-looping factor (Submitter supplied) We report the 4C-seq data and ChIP-seq to study Shep regulation of chromatin looping. We also reported ATAC-seq and CUT&Tag data on sorted neurons that reveal chromatin accessibility and states during the neuronal remodeling of Drosophila melanogaster Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19132 GPL16479 GPL17275 23 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA646944 Series Accession: GSE154645 ID: 200154645 120. Chromatin Accessibility and Regulatory Vocabulary Across Indicine Cattle Tissues (Submitter supplied) We have generated open-chromatin profiles for liver, muscle, and hypothalamus of indicine cattle through ATAC-seq. Using robust methods for motif discovery, motif enrichment and transcription factor binding sites, we identified potential master regulators of the epigenomic profile in these three tissues, namely HNF1, MEF2 and NFYA factors, respectively. Integration with transcriptomic data allowed us to predict their target genes showing a significant recovery of confirmed targets across species. Organism: Bos indicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL29504 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE182nnn/GSE182909/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA758280 Series Accession: GSE182909 ID: 200182909 121. Epigenetic and transcriptomic profiling of neural stem cells after midazolam exposure (Submitter supplied) Here we show that early-life exposure to midazolam (MDZ), a widely used drug in pediatric anesthesia, persistently alters chromatin accessibility and expression of quiescence-associated genes in neural stem cells (NSCs) in mouse hippocampus. The alterations led to a continuous restriction of NSC proliferation toward adulthood, resulting in reduction of neurogenesis associated with the impairment of hippocampal-dependent memory functions. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 31 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA700439 Series Accession: GSE166322 ID: 200166322 122. CD73+ memory CD4 T cells are a long-lived population with elevated effector function and prone to differentiate into TRM-like cells [ATAC-seq] (Submitter supplied) The understanding of heterogeneity of human memory T cells will help to know the function, development and maintenance of memory population, then to improve the recall response or effective immunotherapy. Ecto-5’-nucleotidase CD73 expression in four subsets of memory T cells decreases with aging. The resistance to apoptosis and high expression of IL7R entitle CD73+ memory T cells to be long-lived population. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660347 Series Accession: GSE157162 ID: 200157162 123. In-situ cell-type specific chromatin topologies in the brain revealed by genome architecture mapping [ATAC-seq] (Submitter supplied) We report the application of genome architecture mapping in specific cell types in mouse brain. We generated cell-type specific chromatin contact maps in mouse dopaminergic neurons from the midbrain ventral tegmental area (VTA DN), pyramidal glutamatergic neurons from the cornus ammonis 1 region of the hippocampus (CA1 PGN), and non-neuronal post-mitotic oligodendrocytes from the somatosensory cortex (SSC_Olig). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24247 GPL19057 3 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA728375 Series Accession: GSE174024 ID: 200174024 124. ATAC-seq and RNA-seq of hematopoietic progenitor cells (HPC) and Natural Killer (NK) cells transduced with transcription factors T-BET or EOMES (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 60 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166439/ Series Accession: GSE166439 ID: 200166439 125. Profiling of the chromatin landscape of human natural killer (NK) cells overexpressing the transcription factors T-BET or EOMES (Submitter supplied) T-BET and EOMES are key transcription factors in the development of mature NK cells in mice. However, the role of these transcription factors during human NK cell development is less well understood. Therefore, we overexpressed T-BET or EOMES in human umbilical cord blood-derived hematopoietic progenitor cells (HPC) and cultured them in vitro in an NK cell differentiation model. On day 21 of culture mature stage 4 (CD56+CD94+CD16-) and stage 5 (CD56+CD94+CD16+) NK cells from T-BET or EOMES overexpression and control cultures were sorted, whereafter genomic DNA was isolated and the chromatin accessibility landscape was determined by assay for transposase-accessible chromatin (ATAC) sequencing. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166436/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA700966 Series Accession: GSE166436 ID: 200166436 126. Profiling of the chromatin landscape of hematopoietic progenitor cells (HPC) transduced with transcription factors T-BET and EOMES [ATAC-seq HPC] (Submitter supplied) T-BET and EOMES are key transcription factors in the development of mature Natural Killer (NK) cells in mice. However, the role of these transcription factors during human NK cell development is less well understood. Therefore, we overexpressed T-BET or EOMES in human umbilical cord blood-derived HPC and cultured them in vitro in an NK cell differentiation model. To evaluate the effect of early overexpression of T-BET and EOMES in HPC, the chromatin landscape was uncovered using assay for transposase-accessible chromatin (ATAC) sequencing. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 9 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166435/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA700965 Series Accession: GSE166435 ID: 200166435 127. Co-evolving JAK2V617F+ relapsed AML and donor T cells with PD-1 blockade after stem cell transplantation: an index case [ATAC-seq] (Submitter supplied) JAK2V617+ myeloproliferative disease has been reported to overexpress PD-L1 rationalizing therapeutic PD-1 blockade. We performed an integrated single cell analysis on samples from an exceptional responder to nivolumab to elucidate determinants of response in this patient. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 6 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA694429 Series Accession: GSE165397 ID: 200165397 128. Efficacy of BET protein proteolysis targeted chimera-based combinations against novel patient-derived models of Richter Transformation-Diffuse Large B-Cell Lymphoma [ATAC-Seq] (Submitter supplied) RichterTransformation (RT) develops in CLL as an aggressive, therapy resistant diffuse large B cell lymphoma (RT-DLBCL), commonly clonally related (CLR) to the antecedent CLL. Lack of available pre-clinical models has hampered development of novel therapies for RT-DLBCL. Here,we report the profiles of genetic alterations, active enhancers, gene-expressions and anti-lymphoma drug-sensitivity patterns of first-ever established, patient-derived xenograft models of RT-DLBCLs, including CLR and clonally unrelated (CLUR) to antecedent CLL. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA646373 Series Accession: GSE154456 ID: 200154456 129. Acute depletion of CTCF rewires genome-wide chromatin accessibility (Submitter supplied) Accumulated data suggest that transcription factor CTCF is indispensable to define topologically associated domain (TAD) boundaries and to maintain intra-TAD chromatin loop structures. However, upon genome-wide acute depletion of CTCF, the discrepancy between global reduction of chromatin interactions and minimal alteration of transcription has been evidently observed. To understand CTCF’s direct role in chromatin accessibility and global transcriptional regulation, we have systematically integrated data collected from ATAC-seq, RNA-seq, whole genome bisulfite-seq, Cut&Run and HiC in a previously established CTCF-miniAID knock-in cell lines. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL24676 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641828 Series Accession: GSE153237 ID: 200153237 130. Bruton’s tyrosine kinase (BTK) and indoleamine 2,3-dioxygenase (IDO) block differentiation of inflammatory dendritic cells in tumors [ATAC-seq] (Submitter supplied) Dendritic cells (DCs) are pivotal drivers of anti-tumor immunity, but many of the DCs in tumors appear dysfunctional or immunosuppressive. Using mouse models, we found that robustly immunogenic DCs can arise by differentiation from immature myeloid precursor cells during inflammation. In tumors, however, differentiation of these inflammatory DCs was blocked by a cell-intrinsic signaling pathway created by Bruton’s Tyrosine Kinase (BTK) and the tryptophan-degrading enzyme indoleamine 2,3-dioxygenase (IDO). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 3 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA746298 Series Accession: GSE180026 ID: 200180026 131. The age of the bone marrow microenvironment influences B-cell acute lymphoblastic leukemia progression via CXCR5-CXCL13 (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL13112 12 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE182nnn/GSE182174/ Series Accession: GSE182174 ID: 200182174 132. The age of the bone marrow microenvironment influences B-cell acute lymphoblastic leukemia progression via CXCR5-CXCL13 [ATAC-Seq] (Submitter supplied) We performed ATAC sequencing to determine if epigenetic changes regulate the function of young versus old macrophages. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE182nnn/GSE182172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA755258 Series Accession: GSE182172 ID: 200182172 133. Induced muscle progenitor cells [ATAC-seq] (Submitter supplied) The generation of myotubes from fibroblasts upon forced MyoD expression is a classic example of factor-induced reprogramming in mammals. We recently discovered that additional modulation of signaling pathways with small molecules facilitates reprogramming to more primitive induced muscle progenitor cells (iMPCs). However, the mechanisms by which a single transcription factor drives differentiated cells into distinct developmental states remain unknown. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 28 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA716690 Series Accession: GSE169488 ID: 200169488 134. Induced muscle progenitor cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 60 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169489/ Series Accession: GSE169489 ID: 200169489 135. Intergenerational inheritance of trained immunity and heterologous resistance to infections (ATAC-seq) (Submitter supplied) Intergenerational inheritance (Inter-I) of phenotypic characteristics has been demonstrated in plants and invertebrates, with epigenetic modifications playing a role in the inheritance of a variety of features such as appearance1, adaptation to stress, or resistance to infections. Here we provide evidence of Inter-I of transcriptional and epigenetic signatures of trained immunity to the progeny of mice that survived a sublethal systemic Candida albicans infection. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 26 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA535505 Series Accession: GSE130326 ID: 200130326 136. ATAC chromatin accessibility profiling of terminal end buds and ducts from mouse mammary glands (Submitter supplied) The mammary glands of adult female mice were divided into ductal tissue and terminal end buds (TEBs). Basal and luminal epithelial cells were FACS sorted and nuclei extracted for 75bp paired-end ATAC-seq profiling using an Illumina NextSeq 500 sequencer. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 11 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA693254 Series Accession: GSE165096 ID: 200165096 137. Brg1-dependent enhancer-promoter interactions support B cell activation and germinal center formation (Submitter supplied) Activation and differentiation of B cells depend on extensive rewiring of gene expression networks through changes in chromatin structure and accessibility. The chromatin remodeling complex BAF with its catalytic subunit Brg1 was previously identified as an essential regulator of early B cell development, however, how Brg1 orchestrates gene expression during mature B cell activation is less clear. Here, we find that Brg1 is required for B cell proliferation and germinal center formation through selective interactions with enhancers. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 16 Samples FTP download: GEO (BW, NARROWPEAK, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA750329 Series Accession: GSE180994 ID: 200180994 138. Chromatin accessibility landscape of freshly-isolated human and murine muscle satellite cells and myoblasts (Submitter supplied) Muscle stem cells, also known as satellite cells, represent the main myogenic population accounting for skeletal muscle homeostasis and regeneration. Here, using the Assay for Transposase Accessible Chromatin followed by sequencing (ATAC-seq), we investigated the epigenetic landscape of activated human and murine satellite cells. Our analysis identified a compendium of putative regulatory elements defining activated satellite cells and myoblasts, respectively. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 10 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA694556 Series Accession: GSE165414 ID: 200165414 139. A cis-acting mechanism mediates trancriptional memory at Polycomb target genes in mammals [ATAC-seq] (Submitter supplied) Epigenetic inheritance of gene expression states enables a single genome to maintain distinct cellular identities. How histone modifications contribute to this process remains unclear. Using global chromatin perturbations and local, time-controlled modulation of transcription, we establish the existence of epigenetic memory of transcriptional activation for genes that can be silenced by the Polycomb group. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA716972 Series Accession: GSE169534 ID: 200169534 140. Integration of RNA-Seq and ATAC-Seq Identifies Key Genes and chromatin accessibility changes in Growth hormone-secreting pituitary adenoma (Submitter supplied) Background: Growth hormone-secreting pituitary adenoma (GHPA) is an insidious disease with persistent hypersecretion of growth hormone and insulin-like growth factor 1, leading to increased morbidity and mortality. Though treatments for GHPA have greatly improved, lack of deep knowledge on the precise molecular mechanisms involved in GHPA hinders the development of therapeutic approaches. Few studies have attempted to reveal the genome-wide landscape of GHPA. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 16 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE182nnn/GSE182180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA755271 Series Accession: GSE182180 ID: 200182180 141. Epigenetic therapies in ovarian cancer alter repetitive element expression in a TP53-dependent manner: ATACseq (Submitter supplied) Abstract: Epithelial ovarian carcinomas (OC) are particularly deadly due to intratumoral heterogeneity, resistance to standard-of-care therapies, and poor response to alternative treatments such as immunotherapy. Targeting the OC epigenome with DNA methyltransferase inhibitors (DNMTi) or histone deacetylase inhibitors (HDACi) increases immune signaling and recruits CD8+ T cells and NK cells to fight OC in murine models. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 16 Samples FTP download: GEO (GAPPEDPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE182nnn/GSE182116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA754598 Series Accession: GSE182116 ID: 200182116 142. Response of SCLC to mutant KRAS or EGFR induction (Submitter supplied) Lineage transformation between lung cancer subtypes is a poorly understood phenomenon associated with resistance to treatment and poor patient outcomes. Here, we aimed to model this transition in order to define underlying biological mechanisms and identify potential avenues for therapeutic intervention. Small cell lung cancer (SCLC) is neuroendocrine in origin and, in contrast to non-SCLC (NSCLC), rarely contains mutations that drive the MAPK pathway. more... Organism: Homo sapiens Type: Expression profiling by array Platform: GPL16686 54 Samples FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160482/ Series Accession: GSE160482 ID: 200160482 143. ATAC-seq of lung cancer cell lines with doxycycline KRAS G12V and drug treatments (Submitter supplied) We modelled the effects of KRAS activation on three SCLC cell lines H2107, H82, H524 and investigated the effects of KRAS induction and various drug treatments on motif and chromatin accessibility profiles. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 36 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672329 Series Accession: GSE160204 ID: 200160204 144. A novel therapeutic strategy targeting the mesenchymal phenotype of malignant pleural mesothelioma by suppressing LSD1 [ATAC-seq] (Submitter supplied) ATAC-seq analysis of following knock down of LSD1 in ACC-MESO-1 cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE182nnn/GSE182153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA754805 Series Accession: GSE182153 ID: 200182153 145. Ezh2 is essential for the generation of functional yolk sac derived erythro-myeloid progenitor [CUT&RUN] (Submitter supplied) Yolk sac (YS) hematopoiesis is critical for the survival of the embryo and a major source of tissue-resident macrophages that persist into adulthood. Here we report that the epigenetic regulator Ezh2 is essential for YS hematopoiesis but dispensable for subsequent aorta–gonad–mesonephros (AGM) blood development. Loss of Ezh2 activity in hemogenic endothelium (HE) leads to the generation of phenotypically intact but functionally deficient erythro-myeloid progenitors (EMP). more... Organism: Mus musculus Type: Other Platforms: GPL24247 GPL21626 4 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA753786 Series Accession: GSE181869 ID: 200181869 146. Induction of trophoblast stem cells from human pluripotent stem cells [ATAC-seq] (Submitter supplied) In human, the functional placenta requires the proper differentiation of trophoblastic subtypes from the trophoblast stem cells (hTSCs). Although successful derivation of hTSCs from the early placentas and blastocysts, these hTSCs face ethical concerns and limited models for trophoblast-related disorders at later stage, such as preeclampsia. Here, we show that both hESCs and hiPSCs are able to be induced to the long-term and proliferative hTSCs under defined culture medium. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559737 Series Accession: GSE135693 ID: 200135693 147. Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus (Submitter supplied) To identify a causative variant and effector gene responsible for a 2-fold increased risk of severe COVID-19, a multi-omics platform was deployed. A combination of ATAC-seq, ChIP-seq, Micro Capture-C and NuTi Capture-C were used to characterize a range of cell types, including epithelial, fibroblast, endothelial, immune and erythroid cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 34 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175791/ Series Accession: GSE175791 ID: 200175791 148. Identification of LZTFL1 as a candidate effector gene at a COVID-19 risk locus (ATAC-seq) (Submitter supplied) To identify regions of open chromatin ATAC-seq was carried out in Blood outgrowth endothelial cells (BOECs) and NCI-H441 Epithelial cells Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA733669 Series Accession: GSE175789 ID: 200175789 149. Genome wide chromatin accessibility of Helios null hematopoietic stem and progenitor cells (Submitter supplied) This experiment aimed to determine Helios contribution in chromatin accessibility in hematopoietic stem and progenitor cells. Thus, we examined the change in chromatin accessibility in purified hematopoietic stem cells (LSK, Lin-Sca1+ckit+) from 10 weeks old WT and Helios deficient mice using the ATAC-seq approach. We found that Helios null LSK an affected Open Chromatin Region (OCR) landscape, overall in the proximity of genes regulating platelets functions. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627721 Series Accession: GSE149240 ID: 200149240 150. Subtype Heterogeneity and Epigenetic Convergence in Neuroendocrine Prostate Cancer [ATAC-seq] (Submitter supplied) We analyzed chromatin accessibility, ChIP-seq and RNA-seq across neuroendocrine carcinomas from distinct anatomic origins including Merkel cell carcinomas, neuroendocrine prostate cancer, small cell lung cancer and gastrointestinal NECs. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 27 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA657289 Series Accession: GSE156291 ID: 200156291 151. AMULET: A novel read count-based method for effective multiplet detection from single nucleus ATAC-seq data (Submitter supplied) Similar to other droplet-based single cell assays, single nucleus ATAC-seq (snATAC-seq) data harbor multiplets that confound downstream analyses. Detecting multiplets in snATAC-seq data is particularly challenging due to data sparsity and limited dynamic range (0 reads: closed chromatin, 1: open on in one parental chromosome allele, 2: open on in both alleles chromosomes). Yet, these unique data features offer an opportunity to identify multiplets. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (BED, CSV, MTX, TAR, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA693559 Series Accession: GSE165212 ID: 200165212 152. Integrative Hi-C maps of pancreatic cancer (Submitter supplied) Pancreatic cancer's poor prognosis is caused by distal metastasis, which is associated with epigenomic changes. However, the roles of 3D epigenome in pancreatic cancer biology, especially its metastasis, remain unclear. Here we compare the 3D epigenomic and transcriptomic features among cells derived from pancreatic epithelial, primary and metastatic pancreatic cancer by integrated analysis of in situ Hi-C, ChIP-seq, ATAC-seq, and RNA-seq data. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL20795 66 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA626067 Series Accession: GSE149103 ID: 200149103 153. Next generation sequencing following CUX1 knockdown in erythroblasts (Submitter supplied) Anemia is a significant cause of morbidity and mortality in myeloid malignances. Cytogenetic changes are recurrent within malignant hematopoietic stem and progenitor cells, yet their role in anemia pathogenesis remains unknown. One recurrent karyotypic abnormality in myeloid neoplasms is the deletion of part or all of chromosome 7 [-7/del(7q)], which harbors the transcription factor and tumor suppressor gene, CUX1. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL21103 29 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA752767 Series Accession: GSE181626 ID: 200181626 154. Parallel characterization of cis-Regulatory Elements for Multiple Genes using CRISPRpath [ATAC-seq] (Submitter supplied) Here, we describe CRISPRpath, a CRISPR screening strategy for simultaneously characterizing CREs in multiple genomic loci by leveraging converging phenotypes resulted from transcriptional defects in genes linked to the same biological pathway. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA702101 Series Accession: GSE166834 ID: 200166834 155. Chromatin accessibility underlies cell-type specific programs of amphetamine-regulated gene expression in Nucleus Accumbens interneurons (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 128 Samples FTP download: GEO (BW, CSV, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181421/ Series Accession: GSE181421 ID: 200181421 156. Chromatin accessibility underlies cell-type specific programs of amphetamine-regulated gene expression in Nucleus Accumbens interneurons [ATAC-Seq] (Submitter supplied) Parvalbumin-expressing (PV+) interneurons of the nucleus accumbens (NAc) play an essential role in the addictive-like behaviors induced by psychostimulant exposure. To identify molecular mechanisms of PV+ neuron plasticity, we isolated interneuron nuclei from the NAc of male and female mice following acute or repeated exposure to amphetamine (AMPH) and sequenced for cell type-specific RNA expression and chromatin accessibility. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL24247 37 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA751926 Series Accession: GSE181420 ID: 200181420 157. Chromatin accessibility underlies cell-type specific programs of amphetamine-regulated gene expression in Nucleus Accumbens interneurons [Nuclear and Ribo-tag RNA-seq] (Submitter supplied) Parvalbumin-expressing (PV+) interneurons of the nucleus accumbens (NAc) play an essential role in the addictive-like behaviors induced by psychostimulant exposure. To identify molecular mechanisms of PV+ neuron plasticity, we isolated interneuron nuclei from the NAc of male and female mice following acute or repeated exposure to amphetamine (AMPH) and sequenced for cell type-specific RNA expression and chromatin accessibility. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL17021 GPL21103 GPL24247 90 Samples FTP download: GEO (BW, CSV, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA751925 Series Accession: GSE181419 ID: 200181419 158. Large-scale Chemical Screen Identifies a Geroprotective Role of Gallic Acid in Premature Aging [ATAC-seq] (Submitter supplied) Gallic acid (GA) is a natural phenolic compound with antioxidant, anti-inflammatory, and antineoplastic  properties. Previous studies also revealed that GA supplementation inhibit the decline of rat embryonic and rejuvenate the immune function in D-gal-induced aging accelerated mice. However, the role of GA in regulating senescence of human premature aging stem cells is unknown. We have demonstrated that GA showed beneficial effects in alleviating human mesenchymal stem cell (hMSC) senescence: (1) GA alleviated senescence by promoting stem cell self-renewal ability and down-regulating the expression of aging markers, including P16 and P21, in Werner syndrome (WS) hMSCs; (2) High levels of reactive oxygen species in total cell as well as mitochondria were both rescued by GA treatment; (3) GA also maintained epigenetic features, enhanced cell stemness, and improved mitochondrial homeostasis in WS hMSCs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA752088 Series Accession: GSE181444 ID: 200181444 159. CLAMP and Zelda function together as pioneer transcription factors to promote Drosophila zygotic genome activation [ATAC-Seq] (Submitter supplied) The pioneer transcription factor Zelda (ZLD) increases the accessibility of chromatin to promote the essential process of zygotic genome activation (ZGA) in the Drosophila early embryo. However, many genomic loci remain accessible in the absence of ZLD and are enriched for GA-rich DNA binding motifs. Therefore, we hypothesized that other pioneer TFs that function with ZLD have not yet been identified, especially those that bind to GA-rich motifs. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21306 12 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA639809 Series Accession: GSE152596 ID: 200152596 160. Regions of open chromatin in naive CD21low and CD21pos B cells from CVID patients and in naive CD21pos B cells from healthy controls (Submitter supplied) ATAC seq data from CVID-derived naive CD21low B cells were compared to naive CD21pos Bcells from patients and healthy controls. The data revealed a distinct enahncer landscape in CD21low B cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623928 Series Accession: GSE148338 ID: 200148338 161. The dynamic, combinatorial cis-regulatory lexicon of epidermal differentiation [ATAC-seq] (Submitter supplied) A deep-learning framework interprets multi-omic data across epidermal differentiation, identifying cooperative DNA sequence rules that regulate gene modules. Massively parallel reporter analysis validates temporal dynamics and cis-regulatory logic. Organism: Homo sapiens Type: Third-party reanalysis; Genome binding/occupancy profiling by high throughput sequencing FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181392/ Series Accession: GSE181392 ID: 200181392 162. Tissue microenvironment shapes distinct sets of machineries to regulate ILC2 properties [ATAC-seq] (Submitter supplied) ILC2s from different tissues manifest distinct properties. To investigate the molecular mechanisms regulating tissue features of ILC2s, we performed ATAC-seq on purified ILC2s from 5 different tissues. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 10 Samples FTP download: GEO (CSV, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631407 Series Accession: GSE150179 ID: 200150179 163. ATAC-seq, H3K9ac ChIP-seq and 4sU-seq in WT, SAGA and ATAC mutant mouse embryonic stem cells (Submitter supplied) This SuperSeries is composed of the ATAC-seq, H3K9ac ChIP-seq and 4sU-seq SubSeries. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 38 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175905/ Series Accession: GSE175905 ID: 200175905 164. ATAC-seq in WT, SAGA and ATAC mutant mouse embryonic stem cells (Submitter supplied) Assess chromatin accessibility in WT and mutant ES E14 strains using ATAC-seq. Mutant strains are depleted for subunits of the coactivator complexes SAGA (Supt7l KO) or ATAC (Yeats2, Zzz3) using constitutive knock-out (KO) or the auxin-inducible degron (AID) system. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 16 Samples FTP download: GEO (BIGWIG, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA734280 Series Accession: GSE175902 ID: 200175902 165. ATAC-seq of human tonsillar B-cell populations (Submitter supplied) ATAC-seq in sorted GC centroblasts (GCB: CD20+CD44-CD10+CXCR4+), GC centrocytes (CC: CD20+CD44-CD10+CXCR4-), naïve B cells (NB: CD20+CD44+CD10-IgD+), memory B cells (MB: CD20+CD44+CD10-CD38-CD27+), and plasma cells (PC: CD20+CD44+CD10-CD38+CD27+) Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 25 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA668350 Series Accession: GSE159314 ID: 200159314 166. CD93+ and CD93- HSCs comparison (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 10 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166477/ Series Accession: GSE166477 ID: 200166477 167. CD93+ and CD93- HSCs comparison [ATAC-Seq] (Submitter supplied) Hematopoietic stem cells (HSCs) are characterized by their ability to generate all blood cells while retaining their self-renewal capacity. While it is convenient to believe that HSCs represent a homogenous population, several evidences do not support this notion. Here we identified and characterized a HSC population that expressed CD93 on their membrane. This population showed strong molecular dHSC signature, combined with activation features. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 4 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA701027 Series Accession: GSE166476 ID: 200166476 168. CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL21741 GPL29008 GPL24776 78 Samples FTP download: GEO (BEDGRAPH, BW, HIC, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156099/ Series Accession: GSE156099 ID: 200156099 169. CTCF knockout in zebrafish induces alterations in regulatory landscapes and developmental gene expression [ATAC-seq] (Submitter supplied) CTCF is an 11-zinc-finger DNA-binding protein that acts as a transcriptional repressor and insulator, as well as an architectural protein required for 3D genome folding. CTCF mediates long-range chromatin looping and is enriched at the boundaries of topologically associating domains (TADs), which are sub-megabase chromatin structures composed of genomic regions with high contact frequency. Although CTCF is essential for cycling cells and developing embryos, its in vitro removal has only modest effects over gene expression, challenging the generally accepted idea that TADs facilitate enhancer-promoter interactions within gene regulatory landscapes. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21741 12 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA656770 Series Accession: GSE156095 ID: 200156095 170. Chromatin accessibility and gene expression during adipocyte differentiation identify context-dependent effects at cardiometabolic GWAS loci [RNA-seq] (Submitter supplied) Chromatin accessibility and gene expression in relevant cell contexts can guide identification of regulatory elements and mechanisms at genome-wide association study (GWAS) loci. To identify regulatory elements that display differential activity across adipocyte differentiation, we performed ATAC-seq and RNA-seq in a cell model of preadipocytes and adipocytes at days 4 and 14 of differentiation. For comparison, we created a consensus map of ATAC-seq peaks in 11 subcutaneous adipose tissue samples. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL24676 18 Samples FTP download: GEO (RDATA) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA740463 Series Accession: GSE178795 ID: 200178795 171. Chromatin accessibility and gene expression during adipocyte differentiation identify context-dependent effects at cardiometabolic GWAS loci [ATAC-seq] (Submitter supplied) Chromatin accessibility and gene expression in relevant cell contexts can guide identification of regulatory elements and mechanisms at genome-wide association study (GWAS) loci. To identify regulatory elements that display differential activity across adipocyte differentiation, we performed ATAC-seq and RNA-seq in a cell model of preadipocytes and adipocytes at days 4 and 14 of differentiation. For comparison, we created a consensus map of ATAC-seq peaks in 11 subcutaneous adipose tissue samples. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL20301 44 Samples FTP download: GEO (BED, NARROWPEAK, RDATA) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA740464 Series Accession: GSE178794 ID: 200178794 172. H3K9me blocks transcription factor activity in differentiated cells to ensure tissue integrity [ATAC-seq] (Submitter supplied) Development in multicellular organisms is governed by a carefully orchestrated program of gene expression controlled by both genetic and epigenetic factors1,2. Histone H3 lysine 9 methylation (H3K9me) is the defining modification of heterochromatin, which is thought to have two main functions. It silences satellite repeats and transposable elements to ensure genome stability3, and stabilizes differentiated states by repressing tissue-specific genes4,5. more... Organism: Caenorhabditis elegans Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18245 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA703542 Series Accession: GSE167165 ID: 200167165 173. RNA-Chromatin Interactome Reveals ncRNA Functions for Transcription Regulation in 3D Genome Organization (Submitter supplied) Noncoding RNAs (ncRNAs) are an emerging class of regulatory molecules with a broad range of regulatory functions believed to be mediated by ncRNA-chromatin interactions. Genome-wide understanding of ncRNA functions requires precise mapping of all ncRNAs and their target loci. Current methods for studying chromatin-associated ncRNA lack specificity or are limited to singly assessing RNAs. We devised an unbiased strategy to identify all RNA Interactions with Chromatin by Paired-End-Taging (RICh-PET) and applied this approach to characterize the Drosophila RNA-chromatin interactome. more... Organism: Drosophila melanogaster; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL22339 GPL16479 19 Samples FTP download: GEO (BED, BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA339288 Series Accession: GSE85764 ID: 200085764 174. Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Gallus gallus; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19057 GPL19787 30 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164738/ Series Accession: GSE164738 ID: 200164738 175. Chromatin remodeling and expression dynamics reveal conserved and species-specific regulation during mouse and chicken limb development [ATAC-seq] (Submitter supplied) Understanding the origin of morphological diversity across vertebrates is central to evolutionary developmental biology. cis-regulatory elements (CRE) such as enhancers and promoters interpret precise spatiotemporal cues to control and coordinate gene expression. To get insights into both conserved and species-specific variations during early limb patterning and outgrowth, we leverage genome-wide comprehensive assessment of chromatin accessibility and transcriptional changes during mouse forelimb and chicken wing bud development. more... Organism: Gallus gallus; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL19787 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA691875 Series Accession: GSE164736 ID: 200164736 176. Stem cell fate choices are regulated through antagonistic control of lysosomes by MYC and TFEB (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 33 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153917/ Series Accession: GSE153917 ID: 200153917 177. Stem cell fate choices are regulated through antagonistic control of lysosomes by MYC and TFEB [ATAC-Seq] (Submitter supplied) We show that lysosomes are antagonistically controlled by TFEB and MYC to balance catabolic and anabolic processes required for activating LT-HSC and guiding their lineage fate. TFEB-mediated induction of the endolysosomal pathway for membrane receptor degradation limits LT-HSC metabolic and mitogenic activation; this promotes quiescence and self-renewal and governs erythroid-myeloid commitment. By contrast, MYC engages biosynthetic processes while repressing lysosomal catabolism to drive LT-HSC activation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153910/ Series Accession: GSE153910 ID: 200153910 178. Rapid redistribution and extensive co-binding of NANOG and GATA6 at shared regulatory elements underlie specification of divergent cell fates [ATAC-seq] (Submitter supplied) Establishment of divergent cell types from a common progenitor requires transcription factors (TFs) to promote lineage-restricted transcriptional programs while suppressing alternative fates. In the mouse blastocyst, cells of the inner cell mass (ICM) coexpress NANOG and GATA6, two TFs that drive the bifurcation of these progenitors into either the epiblast (Epi) or the primitive endoderm (PrE), respectively. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 14 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE181nnn/GSE181073/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA750562 Series Accession: GSE181073 ID: 200181073 179. IRF4-dependent division-coupled reprogramming events [IRF4cKO.ATACseq] (Submitter supplied) To assess the timing and scope of IRF4–dependent reprogramming in vivo, CTV-labeled IRF4–sufficient and –deficient B cells were transferred into mMT hosts. One day later, hosts were challenged with 50 mg LPS. Three days post-LPS challenge, transferred cells were recovered and sorted from divisions 0, 1, 3, 4, 5, and 6 as determined by CTV dilution for ATAC–seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 41 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173435/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA725526 Series Accession: GSE173435 ID: 200173435 180. cis-regulation of Grem1 expression during limb development [E10.5 H3K27Ac ChIP-Seq] (Submitter supplied) Spatiotemporal gene expression programs are orchestrated by transcriptional enhancers which interact with target-gene promoters to regulate gene expression. The BMP antagonist Gremlin1 (Grem1) is an important node in the gene regulatory network that controls vertebrate limb development. In this study, we used a combination of open chromatin profiling (ATAC-seq) and chromatin immunoprecipitation sequencing (ChIP-seq) in mouse and chick to identify putative cis-regulatory modules (CRMs) that regulate Grem1 in limb buds. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 3 Samples FTP download: GEO (BIGBED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692430 Series Accession: GSE164905 ID: 200164905 181. Isoform- and mutation- specific roles of Wilms Tumor 1 in acute myeloid leukemia maintenance (ATAC-Seq) (Submitter supplied) Acute myeloid leukemia (AML) is caused by recurrent mutations in members of the gene regulatory and signalling machinery subverting hematopoietic differentiation. We previously showed that each AML sub-type displays a different gene regulatory network with specific transcription factor families playing distinct roles in maintaining the leukemic phenotype. Here we show that the transcription factor WT1 forms a major node in the gene regulatory networks of multiple AML sub-types. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 15 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644365 Series Accession: GSE153860 ID: 200153860 182. cis-regulation of Grem1 expression during limb development [E11.5 H3K27Ac ChIP-seq] (Submitter supplied) Spatiotemporal gene expression programs are orchestrated by transcriptional enhancers which interact with target-gene promoters to regulate gene expression. The BMP antagonist Gremlin1 (Grem1) is an important node in the gene regulatory network that controls vertebrate limb development. In this study, we used a combination of open chromatin profiling (ATAC-seq) and chromatin immunoprecipitation sequencing (ChIP-seq) in mouse and chick to identify putative cis-regulatory modules (CRMs) that regulate Grem1 in limb buds. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 3 Samples FTP download: GEO (BIGBED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635940 Series Accession: GSE151487 ID: 200151487 183. cis-regulation of Grem1 expression during limb development [ATAC mouse forelimb buds] (Submitter supplied) Spatiotemporal gene expression programs are orchestrated by transcriptional enhancers which interact with target-gene promoters to regulate gene expression. The BMP antagonist Gremlin1 (Grem1) is an important node in the gene regulatory network that controls vertebrate limb development. In this study, we used a combination of open chromatin profiling (ATAC-seq) and chromatin immunoprecipitation sequencing (ChIP-seq) in mouse and chick to identify putative cis-regulatory modules (CRMs) that regulate Grem1 in limb buds. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635930 Series Accession: GSE151482 ID: 200151482 184. cis-regulation of Grem1 expression during limb development [ATAC HH24] (Submitter supplied) Spatiotemporal gene expression programs are orchestrated by transcriptional enhancers which interact with target-gene promoters to regulate gene expression. The BMP antagonist Gremlin1 (Grem1) is an important node in the gene regulatory network that controls vertebrate limb development. In this study, we used a combination of open chromatin profiling (ATAC-seq) and chromatin immunoprecipitation sequencing (ChIP-seq) in mouse and chick to identify putative cis-regulatory modules (CRMs) that regulate Grem1 in limb buds. more... Organism: Gallus gallus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19787 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635921 Series Accession: GSE151467 ID: 200151467 185. HIRA-dependent H3.3 deposition and its modification H3.3K36me3 facilitate somatic hypermutation of immunoglobulin genes by maintaining the proper chromatin state and transcription (Submitter supplied) The H3.3 histone variant and its chaperone HIRA are involved in active transcription but their detailed roles in regulating somatic hypermutation (SHM) of immunoglobulin variable regions in human B cells is not yet fully understood. In this study we show that, knockout (KO) of HIRA significantly decreased SHM and changed the mutation pattern of the variable region of immunoglobulin heavy chain (IGH) in the human Ramos B cell line without changing the levels of AID and other major proteins known to be involved in SHM. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA750046 Series Accession: GSE180899 ID: 200180899 186. Integrative ATAC-seq and RNA-seq Analysis of the Longissimus Muscle of Luchuan and Duroc Pigs (Submitter supplied) Luchuan pig is a typical obese pig breed in China, and the diameter and area of its longissimus dorsi muscle fibers are significantly smaller than those of Duroc (lean) pig. Skeletal muscle fiber characteristics are related to meat quality of livestock. The smaller the diameter and area of muscle fiber, the better the meat quality. The diameter and area of muscle fibers are related to muscle growth and development. more... Organism: Sus scrofa Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL22918 12 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA749761 Series Accession: GSE180840 ID: 200180840 187. Single cell ATAC-seq study of Lung epithelial cells with Il33 KO cells (Submitter supplied) Epithelial cells are charged with protection at barrier sites, but whether this normally beneficial response might sometimes become dysfunctional still needs definition. Here we identify a pattern of imbalance marked by basal epithelial cell growth and differentiation that replaces normal airspaces in a mouse model of progressive post-viral lung disease due to Sendai virus. Single-cell and lineage-tracing technologies identify a distinct subset of basal epithelial stem cells (basal- ESCs) that extend into gas-exchange tissue to form long-term bronchiolar-alveolar remodeling regions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (SNAP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA740063 Series Accession: GSE178711 ID: 200178711 188. Human autoinflammatory disease reveals ELF4 as a transcriptional regulator of inflammation (Submitter supplied) Transcription factors specialized to limit the destructive potential of inflammatory immune cells remain ill-defined. We discovered loss-of-function variants in the X-linked ETS transcription factor gene ELF4 in multiple unrelated male patients with early-onset mucosal autoinflammation and inflammatory bowel disease (IBD) characteristics including fevers and ulcers that responded to IL-1, TNF, or IL-12p40 blockade. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL24247 49 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA732918 Series Accession: GSE175569 ID: 200175569 189. SMAD4 Controls Morphogenetic SHH Signaling via Direct Transcriptional Regulation of Cholesterol Biosynthesis in Early Mouse Limb Buds [ATAC-seq] (Submitter supplied) This study describes the functions of SMAD4 during early mouse limb bud development by identifying the direct transcriptional targets Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA470678 Series Accession: GSE114255 ID: 200114255 190. Pax7 pioneer factor action requires both paired and homeo DNA binding domains. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 9 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173743/ Series Accession: GSE173743 ID: 200173743 191. Pax7 pioneer factor action requires both paired and homeo DNA binding domains [ATAC-seq] (Submitter supplied) The pioneer transcription factor Pax7 contains two DNA binding domains (DBD), a paired and a homeo domain. Previous work on Pax7 and the related Pax3 showed that each DBD binds a cognate DNA sequence, thus defining two targets of binding and possibly modalities of action. Genomic targets of Pax7 pioneer action leading to chromatin opening are enriched for composite DNA target sites containing juxtaposed sites for both paired and homeo domains. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 3 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA726942 Series Accession: GSE173741 ID: 200173741 192. Integrated molecular landscape perturbations underlie cellular responses during hyperammonemia [ATAC-seq] (Submitter supplied) Ammonia is a cytotoxic molecule generated during cellular functions and by the gut microbiome. Dysregulated ammonia metabolism initiates a hyperammonemic stress response (HASR). Hyperammonemia occurs in many chronic diseases but there is limited understanding of the overall consequences of HASR. A comprehensive array of unbiased approaches was used to identify global responses during hyperammonemia with experimental validation of critical findings. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 9 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA720401 Series Accession: GSE171642 ID: 200171642 193. Uniacial Cyclic Stretching Promotes Chromatin Accessibility of Gene Loci Associated with Mesenchymal Stem Cells Morphogenesis and Osteogenesis (Submitter supplied) Our results showed that UCS induced cell reorientation and actin fibers realignment, and in turn caused nuclear reorientation and deformation. Furthermore, UCS promoted the expression of osteogenic and chondrogenic marker genes. Based on assay for transposase accessible chromatin with high throughput sequencing (ATAC-seq), gene loci with up-regulated chromatin accessibility under UCS were found associate with regulation of cell morphogenesis, ossification, and osteogenic differentiation signaling pathways. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA700844 Series Accession: GSE166410 ID: 200166410 194. Genome wide chromatin accessibility analysis reveals a role for CREB in retinal ganglion cells axon growth decline in development and regeneration after optic nerve injury (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Rattus norvegicus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL22396 GPL23945 12 Samples FTP download: GEO (BED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163564/ Series Accession: GSE163564 ID: 200163564 195. Genome wide chromatin accessibility analysis reveals a role for CREB in retinal ganglion cells axon growth decline in development and regeneration after optic nerve injury [ATAC-seq] (Submitter supplied) CNS neurons lose their ability to grow and regenerate axons during development. This is the case for Retinal Ganglion Cells (RGCs) in the retina, which transmit visual information to the brain via axons projecting into the optic nerve. RGCs are unable to regenerate their axon after injury, and start a degeneration process that leads to cell death and loss of vision. To identifying molecular mechanisms that increase regeneration of RGC and may offer new treatment strategies for patients with glaucoma or other types of optic neuropathies, we focused on the identification of transcription factors and chromatin accessible sites that are enriched in RGC during developmental stages, in which axon growth capacity is robust. more... Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL22396 4 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA686776 Series Accession: GSE163562 ID: 200163562 196. Next Generation Sequencing Analysis of Wild Type and Chd8-/- LSK in Transcriptomes, Chromatin accessibility and chromatin state mapping (Submitter supplied) Next-generation sequencing (NGS) has been used for study the transcriptomic and genomic change after Chd8 dletion. The goals of this study are to compare NGS-derived LSK transcriptome profiling (RNA-seq), ATAC and H3K4me3 and H3K27me3 Cut&Run data to find downstream targets of CHD8 and its impact on chromatin state. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 22 Samples FTP download: GEO (BW, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678949 Series Accession: GSE161613 ID: 200161613 197. Analysis of long and short enhancers in melanoma cell states (Submitter supplied) Understanding how enhancers drive cell type specificity and efficiently identifying them is essential for the development of innovative therapeutic strategies. In melanoma, the melanocytic (MEL) and the mesenchymal-like (MES) states present themselves with different responses to therapy, making the identification of specific enhancers highly relevant. Using massively parallel reporter assay (MPRA) in a panel of patient-derived melanoma lines (MM lines), we set to identify and decipher melanoma enhancers by first focusing on regions with state specific H3K27 acetylation close to differentially expressed genes. more... Organism: synthetic construct; Homo sapiens Type: Other 6 related Platforms 112 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA749864 Series Accession: GSE180879 ID: 200180879 198. Founder mice pancreatic islets and beta cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL17021 38 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180810/ Series Accession: GSE180810 ID: 200180810 199. Genome-wide chromatin accessibility of founder mice pancreatic islets (Submitter supplied) ATAC-seq data of founder mice pancreatic islets Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 16 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180363/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA747993 Series Accession: GSE180363 ID: 200180363 200. Establishment, Maintenance and Recall of Inflammatory Memory (Submitter supplied) Known for nearly a century, but through mechanisms that remain elusive, cells retain a memory of inflammation that equips them to react quickly and broadly to diverse secondary stimuli. Using mouse epidermal stem cells as a model, we elucidate how cells establish, maintain and recall inflammatory memory. Specifically, we landscape and functionally interrogate temporal, dynamic changes to chromatin accessibility, histone modifications and transcription factor binding that occur during inflammation, post-resolution and in memory recall following injury. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19057 GPL24247 GPL17021 146 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA720147 Series Accession: GSE171596 ID: 200171596 201. Dissecting transcriptional and chromatin accessibility heterogeneity of proliferating cone precursors in human retinoblastoma tumours by single cell sequencing [scATAC-seq] (Submitter supplied) Background: Retinoblastoma (Rb) is a malignant neoplasm arising during retinal development from mutations in the RB1 gene. Loss or inactivation of both copies of RB1 results in initiation of retinoblastoma tumours, however additional genetic changes are needed for the continued growth and spread of the tumour. Ex vivo research has shown that in humans, retinoblastoma may initiate from Rb depleted cone precursors. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 11 Samples FTP download: GEO (CSV, H5, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA699543 Series Accession: GSE166174 ID: 200166174 202. Dissecting transcriptional and chromatin accessibility heterogeneity of proliferating cone precursors in human retinoblastoma tumours by single cell sequencing [scRNA-seq] (Submitter supplied) Background: Retinoblastoma (Rb) is a malignant neoplasm arising during retinal development from mutations in the RB1 gene. Loss or inactivation of both copies of RB1 results in initiation of retinoblastoma tumours, however additional genetic changes are needed for the continued growth and spread of the tumour. Ex vivo research has shown that in humans, retinoblastoma may initiate from Rb depleted cone precursors. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL24676 13 Samples FTP download: GEO (TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA699542 Series Accession: GSE166173 ID: 200166173 203. Ablation of Histone Demethylase KDM5B in Melanoma Augments Anti-Tumor Immunity through Upregulation of Retroelements [ATAC-seq] (Submitter supplied) Purpose: Advanced melanoma patients have poor prognosis. Although immune checkpoint blockade has revolutionized treatment for melanoma patients, majority of patients do not respond. The goal of this research is to evaluate whether epigenetic therapy targeting KDM5B could overcome resistance to immunotherapy. Methods: ATAC-Seq analysis of mouse melanoma cell line YUMMER1.7. Results: We identified that KDM5B directly bind to retreoelements to repress their expression. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA732927 Series Accession: GSE175574 ID: 200175574 204. Gilteritinib-induced upregulation of S100A9 is mediated through BCL6 in Acute Myeloid Leukemia (RNA-Seq II) (Submitter supplied) Purpose: Compare transcriptional changes between drug treated (gilteritinib, TP-0903) and vehicle in acute myeloid leukemia xenografts. Methods: FLT3-ITD+ MOLM13-Luc+ AML cells were xenografted into NSG mice. Mice were randomized according to bioluminescence imaging, and treatment of FLT3 tyrosine kinase inhibitors (TP-0903, 60 mg/kg, once daily for 5 days/week; gilteritinib, 30 mg/kg, once daily for 5 days/week) was started on day 7 post-tail vein injection. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 24 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA746984 Series Accession: GSE180181 ID: 200180181 205. Gilteritinib-induced upregulation of S100A9 is mediated through BCL6 in Acute Myeloid Leukemia (RNA-Seq I) (Submitter supplied) Purpose: Compare transcriptional changes between drug treated (gilteritinib, TP-0903) and vehicle in acute myeloid leukemia xenografts. Methods: FLT3-ITD+ MOLM13-RES-Luc+ (MOLM13 cells with a D835Y mutation generating a resistant phenotype) AML cells were xenografted into NSG mice. Mice were randomized according to bioluminescence imaging, and treatment of FLT3 tyrosine kinase inhibitors (TP-0903, 60 mg/kg, once daily for 5 days/week; gilteritinib, 30 mg/kg, once daily for 5 days/week) was started on day 13 post-tail vein injection. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 23 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA746983 Series Accession: GSE180180 ID: 200180180 206. A Gata3 enhancer necessary for ILC2 development and function (Submitter supplied) The type 2 helper effector program is driven by the master transcription factor GATA3 and can be expressed by subsets of both innate lymphoid cells (ILCs) and adaptive CD4+ T helper (Th) cells. While ILC2s and Th2 cells acquire their type 2 differentiation program under very different contexts, the distinct regulatory mechanisms governing this common program are only partially understood. Here we show that the differentiation of ILC2s, and their concomitant high level of GATA3 expression, are controlled by a Gata3 enhancer, Gata3 +674/762, that plays only a minimal role in Th2 cell differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA716999 Series Accession: GSE169542 ID: 200169542 207. Loss of FOXC1 contributes to the corneal epithelial fate switch and pathogenesis (Submitter supplied) Forkhead box C1 (FOXC1) is required for neural crest and ocular development, and mutations in FOXC1 lead to inherited Axenfeld–Rieger syndrome. Here, we find that FOXC1 and paired box 6 (PAX6) are co-expressed in the human limbus and central corneal epithelium. Deficiency of FOXC1 and alternation in epithelial features occur in patients with corneal ulcers. FOXC1 governs the fate of the corneal epithelium by directly binding to lineage-specific open promoters or enhancers marked by H3K4me2. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 18 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA655547 Series Accession: GSE155773 ID: 200155773 208. The role of Vitamin C and TET dioxygenases in genome-wide features of regulatory T cells [WGBS] (Submitter supplied) TET enzymes are essential for the stability and function of regulatory T cells (Tregs), which maintain immune homeostasis and self-tolerance and express the lineage-determining transcription factor Foxp3. We previously showed that Vitamin C acts through TET enzymes to maintain the demethylated status of CNS2, a key intronic enhancer of the Foxp3 gene that is essential for the stability of Foxp3 expression both in vivo and in vitro. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (BW, COV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592357 Series Accession: GSE141151 ID: 200141151 209. The role of Vitamin C and TET dioxygenases in genome-wide features of regulatory T cells [CMS-IP] (Submitter supplied) TET enzymes are essential for the stability and function of regulatory T cells (Tregs), which maintain immune homeostasis and self-tolerance and express the lineage-determining transcription factor Foxp3. We previously showed that Vitamin C acts through TET enzymes to maintain the demethylated status of CNS2, a key intronic enhancer of the Foxp3 gene that is essential for the stability of Foxp3 expression both in vivo and in vitro. more... Organism: Mus musculus Type: Other Platform: GPL17021 16 Samples FTP download: GEO (COV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592358 Series Accession: GSE141150 ID: 200141150 210. The role of Vitamin C and TET dioxygenases in genome-wide features of regulatory T cells [ATAC-seq] (Submitter supplied) TET enzymes are essential for the stability and function of regulatory T cells (Tregs), which maintain immune homeostasis and self-tolerance and express the lineage-determining transcription factor Foxp3. We previously showed that Vitamin C acts through TET enzymes to maintain the demethylated status of CNS2, a key intronic enhancer of the Foxp3 gene that is essential for the stability of Foxp3 expression both in vivo and in vitro. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 14 Samples FTP download: GEO (COV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592360 Series Accession: GSE141149 ID: 200141149 211. The role of Vitamin C and TET dioxygenases in genome-wide features of regulatory T cells [RNA-seq] (Submitter supplied) TET enzymes are essential for the stability and function of regulatory T cells (Tregs), which maintain immune homeostasis and self-tolerance and express the lineage-determining transcription factor Foxp3. We previously showed that Vitamin C acts through TET enzymes to maintain the demethylated status of CNS2, a key intronic enhancer of the Foxp3 gene that is essential for the stability of Foxp3 expression both in vivo and in vitro. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL24247 GPL17021 26 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592359 Series Accession: GSE141148 ID: 200141148 212. ATAC-seq and mRNA-seq of the following human primary CD4 T cell subsets: GM-CSF producing, GM-CSF negative, bulk, memory and naive CD4 T cells. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 112 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119734/ Series Accession: GSE119734 ID: 200119734 213. mRNA-seq of the following human primary CD4 T cell subsets: GM-CSF producing, GM-CSF negative, bulk, memory and naive CD4 T cells. (Submitter supplied) Above primary T cell subsets were isolated by magnetic isolation (including GM-CSF capture and secretion assay) from peripheral blood of 5 to 6 human healthy donors. Total RNA (and genomic DNA for an accompanying dataset) was extracted for transcriptome analysis. By integration of RNA-seq data with corresponding ATAC-seq data we generated a novel gene regulatory network of human GM-CSF producing and memory T helper cells. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 29 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490153 Series Accession: GSE119732 ID: 200119732 214. ATAC-seq of the following human primary CD4 T cell subsets: GM-CSF producing, GM-CSF negative, bulk, memory and naive CD4 T cells. (Submitter supplied) Above primary T cell subsets were isolated by magnetic isolation (including GM-CSF capture and secretion assay) from peripheral blood of 5 to 6 human healthy donors. Genomic DNA (and total RNA for an accompanying dataset) was extracted and processed for ATAC-seq to determine DNA accessibility. By integration of ATAC-seq data with corresponding RNA-seq data we generated a novel gene regulatory network of human GM-CSF producing and memory T helper cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 83 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490154 Series Accession: GSE119731 ID: 200119731 215. Transcriptomic and epigenetic profiling of fibroblasts in Idiopathic Pulmonary Fibrosis (IPF) (Submitter supplied) ATAC-Seq was applied to identify differentially accessible regions within the genome between healthy and IPF fibroblasts. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA747249 Series Accession: GSE180242 ID: 200180242 216. Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing; Third-party reanalysis Platforms: GPL21103 GPL19057 23 Samples FTP download: GEO (BW, COOL, NARROWPEAK, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165495/ Series Accession: GSE165495 ID: 200165495 217. Mesomelic Dysplasias Associated With The HOXD Locus Are Caused By Regulatory Reallocations [ATAC-Seq] (Submitter supplied) Some human families display severe shortening and bending of the radius and ulna, a condition referred to as mesomelic dysplasia. Many of these families contain chromosomal rearrangements at 2q31, where the human HOXD locus maps. In mice, the dominant X-ray-induced Ulnaless inversion of the HoxD gene cluster produces a similar phenotype suggesting that the same pathological mechanism is at work in humans and mice. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 5 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA694678 Series Accession: GSE165490 ID: 200165490 218. Using ATAC-Seq to investigate the impact of vaccination on the epigenome (Submitter supplied) We used a mouse model to investigate whether live (BCG) and non-live (DTPw) vaccines differentially reprogram trained immune responses and to investigate whether immunisation with DTPw altered susceptibility to sepsis. We found that compared to BCG-immunised mice, DTPw immunisation led to altered monocyte and dendritic cell (DC) cytokine responses to subsequent secondary stimuli, as well as genome-wide changes to chromatin accessibility in DCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683620 Series Accession: GSE162872 ID: 200162872 219. Native G-quadruplexes Stabilization Impairs Transcription Initiation (Submitter supplied) G-quadruplexes (G4s) are noncanonical DNA secondary structures formed through the self-association of guanines. They are distributed genome-widely and participate in multiple biological processes including gene transcription, and quadruplex-targeted ligands serve as potential therapeutic agents for DNA-targeted therapies. However, the roles of G-quadruplexes in transcriptional regulation remains elusive. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Third-party reanalysis; Expression profiling by high throughput sequencing Platform: GPL24676 59 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA739982 Series Accession: GSE178668 ID: 200178668 220. The role of Vitamin C and TET dioxygenases in genome-wide features of regulatory T cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Methylation profiling by high throughput sequencing Platforms: GPL17021 GPL24247 66 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141152/ Series Accession: GSE141152 ID: 200141152 221. Persistent JunB Activation in Fibroblasts Disrupts Stem Cell Niche Interactions Enforcing Skin Aging (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 24 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180009/ Series Accession: GSE180009 ID: 200180009 222. Persistent JunB Activation in Fibroblasts Disrupts Stem Cell Niche Interactions Enforcing Skin Aging [ATAC-seq] (Submitter supplied) ATAC-seq was performed in control murine dermal fibroblasts (MDF) in the absence and presence of rotenone at a concentration of 250µM for 3 hrs), and in freshly isolated control (Co) and Sod2 cKO MDF. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE180nnn/GSE180007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA746264 Series Accession: GSE180007 ID: 200180007 223. Functional antagonism of chromatin modulators regulates EMT (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL11154 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155117/ Series Accession: GSE155117 ID: 200155117 224. Functional antagonism of chromatin modulators regulates EMT [ATAC-Seq] (Submitter supplied) Genome-wide chromatin analyses to validate the CRISPR interference screen for modulators of mesenchymal signaling reporter in A549 and H1944 cells. ATAC-seq in naive, GSK126- and TGFB-treated A549 cells. ChIP-seq in naive A549 cells for chromatin modulators, ChIP-seq in naive and GSk126-treated cells from RNAPII in A549 cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648648 Series Accession: GSE155116 ID: 200155116 225. Functional antagonism of chromatin modulators regulates EMT [ChIP-Seq] (Submitter supplied) Genome-wide chromatin analyses to validate the CRISPR interference screen for modulators of mesenchymal signaling reporter in A549 and H1944 cells. ATAC-seq in naive, GSK126- and TGFB-treated A549 cells. ChIP-seq in naive A549 cells for chromatin modulators, ChIP-seq in naive and GSk126-treated cells from RNAPII in A549 cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648647 Series Accession: GSE155115 ID: 200155115 226. Single-cell ATAC-Sequencing of adipose Treg cells (Submitter supplied) Systematic characterizations of adipose Treg subsets and their in vivo roles remain uncommon. The goal of this study is to reveal the heterogeneity and chromatin landscape of adipose Treg cells. Using single-cell ATAC-seq to map adipose Treg cells, we identified different adipose subsets. Strikingly, our scATAC-seq analysis revealed a strong enrichment of key transcription factor motifs, which may play function in fate specification. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21273 1 Sample FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA616335 Series Accession: GSE147768 ID: 200147768 227. An androgen receptor switch underlies lineage infidelity to drive neuroendocrine prostate cancer (Submitter supplied) We generate transcription factor, histone modification and ATAC cistromes in castration-resistant prostate cancer (CRPC) and treatment-induced neuroendocrine prostate cancer (tNEPC) specimens. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 41 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138460/ Series Accession: GSE138460 ID: 200138460 228. An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATACSeq_shBrd4] (Submitter supplied) Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional perturbations in autochthonous mouse models, we show that the combination of Kras mutation and tissue damage promotes a unique chromatin state in the pancreatic epithelium that distinguishes neoplastic transformation from normal regeneration and is selected for throughout malignant evolution. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162368/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA681615 Series Accession: GSE162368 ID: 200162368 229. An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATACSeq_rIL33] (Submitter supplied) Damaged tissues have increased risk of cancer development through poorly understood mechanisms. In the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and ultimately pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional perturbations in autochthonous mouse models, we show that the combination of Kras mutation and tissue damage promotes a unique chromatin state in the pancreatic epithelium that distinguishes neoplastic transformation from normal regeneration and is selected for throughout malignant evolution. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA681614 Series Accession: GSE162367 ID: 200162367 230. Addiction-associated genetic variants implicate brain cell type- and region-specific cis-regulatory elements in addiction neurobiology (Submitter supplied) Recent large genome-wide association studies (GWAS) have identified multiple confident risk loci linked to addiction-associated behavioral traits. Genetic variants linked to addiction-associated traits lie largely in non-coding regions of the genome, likely disrupting cis-regulatory element (CRE) function. CREs tend to be highly cell type-specific and may contribute to the functional development of the neural circuits underlying addiction. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 35 Samples FTP download: GEO (BW, NARROWPEAK, RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA677977 Series Accession: GSE161374 ID: 200161374 231. BATF and IRF4 cooperate to counter exhaustion in tumour-infiltrating CAR T cells (ATAC-seq) (Submitter supplied) Cooperative interactions among transcription factors are essential for gene transcription. We previously showed that NFAT and AP-1 (Fos-Jun) transcription factors cooperate to promote the effector functions of T cells, but that under conditions where it is unable to cooperate with AP-1, NFAT imposes a negative feedback programme of T cell hyporesponsiveness (“exhaustion”). Here we show that BATF and IRF4 cooperate to counter T cell exhaustion. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647372 Series Accession: GSE154742 ID: 200154742 232. Pioneer factor Foxa2 enables ligand-dependent activation of type II nuclear receptors FXR and LXRa (Submitter supplied) Type II nuclear hormone receptors, such as FXR, LXR, and PPAR, which function in glucose and lipid metabolism and serve as drug targets for metabolic diseases, are permanently positioned in the nucleus regardless of the ligand status. Ligand activation of these receptors is thought to occur by co-repressor/co-activator exchange, followed by initiation of transcription. However, recent genome-wide location analysis showed that LXRα and PPARα binding in the liver is largely ligand-dependent. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL30172 GPL19057 106 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627243 Series Accession: GSE149075 ID: 200149075 233. TNFα-producing Macrophages Determine Subtype Identity and Prognosis via AP1 Enhancer Reprogramming in Pancreatic Cancer [ChIP-/ATAC-seq] (Submitter supplied) In pancreatic cancer, two distinct transcriptomic subtypes were identified with a high prognostic relevance: the classical and basal-like subtype. Therefore, in this study, we wanted to use an unbiased method to investigate the global chromatin accessibility in subtype-defined pancreatic cancer cell lines, as well as define the binding profile of the highly subtype-dependent JUN/AP1 transcription factors JUNB (classical) and cJUN (basal). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 17 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA649804 Series Accession: GSE179781 ID: 200179781 234. Chromatin Interaction Neural Network (ChINN): A machine learning-based method for predicting chromatin interactions from DNA sequences (Submitter supplied) Chromatin interactions play important roles in regulating gene expression. However, the availability of genome-wide chromatin interaction data is limited. Various computational methods have been developed to predict chromatin interactions. Most of these methods rely on large collections of ChIP-Seq/RNA-Seq/DNase-Seq datasets and predict only enhancer-promoter interactions. Some of the ‘state-of-the-art’ methods have poor experimental designs, leading to over-exaggerated performances and misleading conclusions. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL18573 GPL20301 18 Samples FTP download: GEO (HIC, NARROWPEAK, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688087 Series Accession: GSE163896 ID: 200163896 235. The role of histone variant H3.3 regulation by HIRA in hematopoiesis (ATAC-Seq) (Submitter supplied) Histone variants contribute to the complexity of the chromatin landscape and play an integral role in defining DNA domains and regulating gene expression. The histone H3 variant H3.3 is incorporated into genic elements independent of DNA replication by its chaperone HIRA. Here we demonstrate that Hira is required for the self-renewal of adult hematopoietic stem cells (HSCs) and to restrain erythroid differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA684566 Series Accession: GSE163050 ID: 200163050 236. Deregulated mito-nuclear communication alters chromatin plasticity and osteogenic differentiation potential upon ageing in mesenchymal stem cells (MSCs) (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 GPL24247 33 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143580/ Series Accession: GSE143580 ID: 200143580 237. Deregulated mito-nuclear communication alters chromatin plasticity and osteogenic differentiation potential upon ageing in mesenchymal stem cells (MSCs) [ATAC-seq] (Submitter supplied) We report that upon ageing MSC undergo a metabolic switc, down-regulating glycolysis and inducing fatty acid oxidation, which results in elevated acetyl-CoA levels. However, aged cells exhibit chromatin compaction and histone hypo-aceylation. This is due to the lower levels of citrate carrier, resulting in impaired acetyl-CoA export from mitochondria to the cytosol, which concomitantly affetcs histone acetylation and osteogenesis. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600975 Series Accession: GSE143578 ID: 200143578 238. Gilteritinib-induced upregulation of S100A9 is mediated through BCL6 in Acute Myeloid Leukemia (Submitter supplied) Purpose: Compare transcriptional changes between drug treated (gilteritinib, TP-0903) and vehicle in acute myeloid leukemia xenografts. Methods: FLT3-ITD+ MOLM13-RES-Luc+ (MOLM13 cells with a D835Y mutation generating a resistant phenotype) AML cells were xenografted into NSG mice. Mice were randomized according to bioluminescence imaging, and treatment of FLT3 tyrosine kinase inhibitor (gilteritinib, 30 mg/kg, once daily for 5 days/week) was started on day 13 post-tail vein injection. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA743665 Series Accession: GSE179421 ID: 200179421 239. Genome-wide chromatin accessibility and DNA methylaion of wildtype zebrafish livers at 5 dpf (120 hpf) (Submitter supplied) The goal of this study is to use ATAC-Seq and reduced representation bisulfite sequencing (RRBS) to determine the chromatin and DNA methylation landscape of the liver in zebrafish larvae at 5 days post fertilization. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL25922 6 Samples FTP download: GEO (BEDGRAPH, BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA727017 Series Accession: GSE173792 ID: 200173792 240. Polyamine metabolism regulates the T cell epigenome through hypusination (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 112 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157598/ Series Accession: GSE157598 ID: 200157598 241. Polyamine metabolism regulates the T cell epigenome through hypusination [ATAC-seq] (Submitter supplied) We report here a central role for polyamines in T cell differentiation and function. Deficiency in ornithine decarboxylase (ODC), a critical enzyme for polyamine synthesis, resulted in a profound failure of CD4+ T cells to adopt correct subset specification, underscored by ectopic expression of multiple cytokines and lineage- defining transcription factors across TH1, TH2, TH17, and Treg polarizing conditions, and enhanced colitogenic potential. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 56 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA662099 Series Accession: GSE157597 ID: 200157597 242. Antibody blockade resets CHI3L1-induced glioma stem cell phenotypic transitions and reduces glioblastoma tumor burden (Submitter supplied) CHI3L1 (Chitinase 3-like1) is one of the highest expressed genes in glioblastoma and is associated with therapy resistance and low survival of patients. Here, we show that exposure of glioma stem cells (GSCs) to CHI3L1 induces marked phenotypic and transcriptomic change from CD133+/SOX2+ pro-neural to CD44+/CHI3L1+ mesenchymal phenotype. CHI3L1 induces chromatin remodeling in GSCs and regulates accessibility of ZNF281, CTCFL, SOX9, and the OCT4-SOX2-TCF3-NANOG transcription factor complex that drive the CHI3L1-mediated mesenchymal “switch” and maintain GSC identity. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644994 Series Accession: GSE154060 ID: 200154060 243. Identification of the PRC1-interacting protein, L3mbtl3 as a novel gatekeeper of neocortical neurogenesis and proneural gene function  [ATAC-seq] (Submitter supplied) The neocortex is comprised of six neuronal layers that are derived in an inside-out sequence. Neurog2, a proneural gene encoding a basic-helix-loop-helix transcription factor, is required and sufficient to specify the fate of only early-born, deep-layer neurons, despite being expressed throughout the cortical neurogenic period. To identify potential inhibitors of Neurog2 function, we used a TAP-tagging screen, identifying L3mbtl3, a histone methyl-lysine binding protein that interacts with Rnf2 in Polycomb Repressive Complex 1 (PRC1), as a novel Neurog2 interactor. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 7 Samples FTP download: GEO (BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA743907 Series Accession: GSE179470 ID: 200179470 244. DFMO effect on Th17 and iTreg cells (ATAC-Seq) (Submitter supplied) We studied the effects of polyamine pathway inhibitors on differentiation of nonpathogenic Th17 cellsin vitro. Here, we used difluoromethylornithine (DFMO), an irreversible inhibitor of ODC1, the enzyme that catalyzes the conversion of ornithine to putrescine. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 12 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165088/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA693243 Series Accession: GSE165088 ID: 200165088 245. OLIG2 maintenance is not essentially required for diffuse intrinsic pontine glioma cell line growth but regulates tumor phenotypes (Submitter supplied) we found that CCHMC-DIPG1 cells express little OLIG2 and exhibit a mesenchymal phenotype, which raised a question regarding the role of OLIG2 in the growth of DIPG cells. Our results indicate that OLIG2 is dispensable for DIPG cell growth but is required for maintenance of the proneural tumor phenotype. Downregulation of OLIG2 leads to deregulation of adaptive YAP1 and EGFR signaling. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL16791 19 Samples FTP download: GEO (BEDGRAPH, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660338 Series Accession: GSE157158 ID: 200157158 246. An engineered IL-2 partial agonist promotes CD8+ T cell stemness (Submitter supplied) Adoptive transfer of antigen-specific T cells represents a major advance in cancer immunotherapy, with robust clinical outcomes in some patients . Both the number of transferred T cells and their differentiation state are critical determinants of effective responses. T cells can be expanded with T cell receptor (TCR)-mediated stimulation and interleukin-2, but this can lead to differentiation into effector T cells and lower therapeutic efficacy, whereas maintenance of a more stem-cell-like state before adoptive transfer is beneficial. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21290 GPL21493 71 Samples FTP download: GEO (BED, RPKM) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA576860 Series Accession: GSE138698 ID: 200138698 247. INO80 promotes and safeguards bivalency [ATAC-seq] (Submitter supplied) INO80 is involved in many chromatin-dependent functions. However, its role in pluripotency has not been fully defined. We examined the impact of Ino80 deletion in the naïve and primed pluripotent stem cells. We found that Ino80 deletion had minimal effect on self-renewal and gene expression in the naïve state, but led to cellular differentiation and de-repression of developmental genes in the primed state. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA665521 Series Accession: GSE158528 ID: 200158528 248. RNA-seq and ATAC-seq profiling of terminal end buds and ducts from mouse mammary glands (Submitter supplied) The mammary glands of adult female mice were divided into ductal tissue and terminal end buds (TEBs). Basal and luminal epithelial cells were FACS sorted. RNA and nuclei were extracted for RNA-seq and ATAC-seq profiling using an Illumina NextSeq 500 sequencer. This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 22 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165099/ Series Accession: GSE165099 ID: 200165099 249. The transcription factor BCL6 controls early development of innate-like T cells (RNA-seq) (Submitter supplied) Innate T cells, including invariant natural killer T (iNKT) and mucosal-associated innate T (MAIT) cells, are a heterogeneous T lymphocyte population with effector properties pre-programmed during their thymic differentiation. How this program is initiated is currently unclear. Here, we show that the transcription factor BCL6 is transiently expressed in iNKT cells upon exit from positive selection and is required for their proper development beyond stage 0. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554324 Series Accession: GSE134211 ID: 200134211 250. TNFα-producing Macrophages Determine Subtype Identity and Prognosis via AP1 Enhancer Reprogramming in Pancreatic Cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other Platforms: GPL16791 GPL20301 GPL11154 31 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173159/ Series Accession: GSE173159 ID: 200173159 251. Oct4 cooperates with distinct ATP-dependent chromatin remodelers in naïve and primed pluripotent states in human (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL24676 29 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168002/ Series Accession: GSE168002 ID: 200168002 252. Oct4 cooperates with distinct ATP-dependent chromatin remodelers in naïve and primed pluripotent states in human [ATAC-seq] (Submitter supplied) Understanding the molecular underpinnings of pluripotency is a prerequisite for optimal maintenance and application of embryonic stem cells (ESCs). While the protein-protein interactions of core pluripotency factors have been identified in mouse ESCs, their physical interactome in human ESCs (hESCs) has not been explored thus far. Here we mapped the protein-protein interactions of OCT4 in naive and primed hESCs, revealing extensive connections to ATP-dependent nucleosome remodeling complexes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 11 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA705701 Series Accession: GSE167979 ID: 200167979 253. Cell Type-Resolved Genomic Profiling of NASH and liver fibrosis (Submitter supplied) We generated hepatocyte-specific profiles of the genomic landscapes during NASH progression using the INTACT methodology Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 22 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683621 Series Accession: GSE162870 ID: 200162870 254. Lineage selective cardiac GATA4 chromatin occupancy [embryo] (Submitter supplied) We used cre-directed biotinylation of a GATA4 knockin allele with an AviTag epitope tag to measure GATA4 chromatin occupancy in endocardial and cardiomyocyte lineages in the E12.5 heart. These data are complemented by lineage selective measurement of gene expression and chromatin accessibility. Cardiomyocyte accessibility and gene expression data were reported in GSE124008. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 21 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA656292 Series Accession: GSE156001 ID: 200156001 255. Effect of NKX2-5 or ETS1 on GATA4 pioneer activity [fibroblast] (Submitter supplied) GATA4 is a pioneer transcription factor. The mechanisms by which pioneer factors select and occupy specific loci, open chromatin, and activate enhancers is not well understood. To address the influence of partner, non-pioneer factors on pioneer factor activity, we analyzed the effect of NKX2-5 or ETS1 on GATA4 pioneer activity. NIH3T3 cells were transduced with lentivirus to obtain stable cell lines that express GFP (control), GATA4 (G), NKX2-5 (N), ETS1 (E), GATA4+NKX2-5 (GN), and GATA4+ETS1 (GE). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 51 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA655132 Series Accession: GSE155652 ID: 200155652 256. Amniotic fluid cells chromatin accessibility in Turner's syndrome (Submitter supplied) Turner syndrome is a relatively rare condition that is usually associated with the loss of all or part of an X chromosome. Amniotic fluid is a complicated biological material, could contribute to the understanding of turner syndrome pathogenesis. In this study, ATAC-seq analysis of Turner syndrome (45X) and Female (46XX) amniotic fluid cells was applied to illustrate that genome wide chromatin accessible landscapes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 2 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA646749 Series Accession: GSE154598 ID: 200154598 257. Onecut1 and Otx2 directly regulate multiple genes expressed early in cone and horizontal cell development [scRNA-seq] (Submitter supplied) The development of the retina into a highly organized structure occurs via the production of over 100 cell types from a pool of retinal progenitor cells (RPCs). While some RPCs are capable of making many types of retinal cell types, some terminally dividing RPCs are restricted to the production of specific types of daughter cells. Notably, although such restrictions can be limited to the production of a very specific single cell type, in other cases, production of two very different cell types, such as a photoreceptor and an interneuron, occurs. more... Organism: Gallus gallus Type: Expression profiling by high throughput sequencing Platforms: GPL26853 GPL19064 GPL19787 4 Samples FTP download: GEO (GTF, MTX, RDS, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637870 Series Accession: GSE151947 ID: 200151947 258. Oct4 mainly controls enhancer activity rather than accessibility (Submitter supplied) The transcription factor Oct4 is essential for stem cell pluripotency and efficient cell reprogramming, but its functional roles remain incompletely understood. Here we investigate Oct4 function by rapidly depleting Oct4 from mouse embryonic stem cells and conducting a time-resolved multiomics analysis. Oct4 depletion leads to an immediate loss of Oct4 binding to putative enhancers that are accessible in chromatin. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL18480 48 Samples FTP download: GEO (BW, GTF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA731505 Series Accession: GSE174774 ID: 200174774 259. An Atlas of Gene Regulatory Elements in Adult Mouse Cerebrum (Submitter supplied) The mammalian cerebrum performs high-level sensory, motor control and cognitive functions through highly specialized cortical networks and subcortical nuclei. Recent surveys of mouse and human brains with single cell transcriptomics and high-throughput imaging technologies have uncovered hundreds of neuronal cell types and a variety of non-neuronal cell types distributed in different brain regions, but the cell-type-specific transcriptional regulatory programs responsible for the unique identity and function of each brain cell type have yet to be elucidated. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 2 Samples FTP download: GEO (SNAP, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA726539 Series Accession: GSE173650 ID: 200173650 260. The CTCF/LncRNA-PACERR/EP300 complex in TAMs promotes the malignant progression of pancreatic ductal adenocarcinoma (PDAC) by docking at the PTGS2 promoter region (Submitter supplied) The unregulated expression of COX-2 in tams is causally related to the occurrence, development and outcome of pancreatic ductal adenocarcinoma. We describe a new basic level of transcriptional control of COX-2 expression. Constructing in vivo and in vitro TAM model lines, we found that CTCF plays a significant role in the chromatin remodeling of pancreatic cancer-related macrophages, and showed that CTCF, which acts as both a transcription factor and an insulator, establishes an open chromatin domain, and Induced the expression of LncRNA PACERR in the upstream promoter region of PTGS2. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 23 Samples FTP download: GEO (BW, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA716651 Series Accession: GSE169451 ID: 200169451 261. Next Generation Sequencing Facilitates Quantitative Analysis of ventilated and unventilated preterm lambs and normal full-term lambs. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Ovis aries Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL27721 GPL19778 30 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163869/ Series Accession: GSE163869 ID: 200163869 262. Genome-wide DNA access sites in ventilated preterm lamb lungs [ATAC-seq] (Submitter supplied) Purpose: ATAC-seq was performed on preterm lambs that were ventilated by invasive mechanical ventilation or noninvasive respiratory support utilizing a mask and compared to gestation-age-matched preterm lambs that were not ventilated and naturally delivered term lambs. Methods: Lung chromatin access profiles were generated for: 1) Unventilated preterm lamb, 2) preterm lambs delivered at gd131 and intubated and mechanically ventilated for 3 days, 3) preterm lambs delivered at gd131 and not intubated and resuscitated by placing a face mask over the nose and mouth and controlling O2 delivery via a computer-controlled electronic blower device, 4) unventilated naturally delivered full-term lambs. more... Organism: Ovis aries Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19778 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA687665 Series Accession: GSE163807 ID: 200163807 263. FFPE-ATAC decodes the chromatin accessibility from the clinical archived FFPE tissues (Submitter supplied) We present FFPE-ATAC, a new ATAC-seq tool for chromatin accessibility profiling that decodes the chromatin accessibility from mouse FFPE tissue and clinical archived FFPE tissues. The FFPE-ATAC generates the high-quality chromatin accessibility profiles from clinical FFPE tissue sections with 5-20 µm thickness, and reveals the disease-associated regulatory elements in different types of FFPE archived tissue. more... Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL13112 GPL24247 68 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA685735 Series Accession: GSE163306 ID: 200163306 264. Single cell ATAC-sequencing on E17.5 mouse lungs. (Submitter supplied) After quality control, sample integration, and checking the celltype specific genes, we identified major cell types as in scRNA-seq analysis. We also identified mesenchymal cell cluster by checking markers genes identified in scRNA-seq analysis. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 3 Samples FTP download: GEO (CSV, H5, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661084 Series Accession: GSE157378 ID: 200157378 265. Ppara and fatty acid oxidation coordinate hepatic transcriptional architecture (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 28 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179053/ Series Accession: GSE179053 ID: 200179053 266. Ppara and fatty acid oxidation coordinate hepatic transcriptional architecture (ATAC-Seq) (Submitter supplied) Mice harboring a liver-specific carnitine palmityltransferase 2 (Cpt2) knockout exhibit drastic lipid accumulation following a 24hr fast. Crossing Cpt2L-/- mice with Pparα-/- mice provides a model to drive ligand-activated Pparα signaling in liver. We use this to investigate unique patterns of Pparα target gene transcription and demonstrate the requirement for ligand-activated Pparα in maintaining transcriptionally permissive genomic architecture in liver, including regulation of promoters and enhancer elements during periods of nutrient deprivation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA742020 Series Accession: GSE179050 ID: 200179050 267. MYOCD is required for cardiomyocytes induction from human urine cells and fibroblasts through remodeling chromatin (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL24676 48 Samples FTP download: GEO (BW, RESULTS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179013/ Series Accession: GSE179013 ID: 200179013 268. MYOCD is required for cardiomyocytes induction from human urine cells and fibroblasts through remodeling chromatin [ATAC-seq] (Submitter supplied) Despite direct reprogramming of human cardiac fibroblasts into induced cardiomyocytes (iCM) holds great potential for heart regeneration, the mechanisms are poorly understood. Whether other human somatic cells could be reprogrammed into cardiomyocytes is also unknown. Here, we report human urine cells (hUCs) could be efficiently converted into CM-like cells and the associated chromatin accessibility dynamics (CAD) by assay for transposase accessible chromatin(ATAC)-seq. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 22 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE179nnn/GSE179011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA741911 Series Accession: GSE179011 ID: 200179011 269. Comparative regulatory analysis of single cell data reveals a novel B cell subpopulation in chronic lymphocytic leukemia (Submitter supplied) We propose a computational method for single cell comparative regulatory analysis based on single cell gene expression (scRNA-seq) and single cell chromatin accessibility data (scATAC-seq) from two different conditions. Our software sc-compReg provides joint clustering and embedding of the cells from both scRNA-seq and scATAC-seq, and construction of differential regulatory networks across two conditions. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 4 Samples FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159417/ Series Accession: GSE159417 ID: 200159417 270. Chromatin accessibility and gene expression maps of Plasma Cells and Myeloma Plasma Cells [RNA-seq] (Submitter supplied) We report the application of paired Assay for Transposase-Accessible Chromatin (ATAC-seq) and RNA-seq data to profile the regulatory landscape and expression of 5 primary Plasma Cell (PC), 28 Multiple Myeloma (MM) PC as well as 5 cell lines samples. Findings discriminated MM and MM subgroup-specific changes such as the exclusive overexpression of CCND1 and CCND2 oncogenes. DNA accessibility changes were correlated to gene expression in a topologically constrained manner to elucidate novel enhancer - promoter interactions, genes and pathways critical for myeloma biology and developmentally activated or de novo formed enhancers. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 38 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA642175 Series Accession: GSE153380 ID: 200153380 271. Chromatin accessibility and gene expression maps of Plasma Cells and Myeloma Plasma Cells [ATAC-seq] (Submitter supplied) We report the application of paired Assay for Transposase-Accessible Chromatin (ATAC-seq) and RNA-seq data to profile the regulatory landscape and expression of 5 primary Plasma Cell (PC), 28 Multiple Myeloma (MM) PC as well as 5 cell lines samples. Findings discriminated MM and MM subgroup-specific changes such as the exclusive overexpression of CCND1 and CCND2 oncogenes. DNA accessibility changes were correlated to gene expression in a topologically constrained manner to elucidate novel enhancer - promoter interactions, genes and pathways critical for myeloma biology and developmentally activated or de novo formed enhancers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 39 Samples FTP download: GEO (BED, BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA642174 Series Accession: GSE153379 ID: 200153379 272. Acquired resistance to targeted therapy confers cross-resistance to immunotherapy (Submitter supplied) We identify a profoundly remodelled TME in targeted therapy resistant (RTT) tumours. We provide bulk transcriptomic data of targeted therapy naive (NTT) and RTT tumours of 3 murine models. Additionally, we provide low-input sequencing of CD103+ dendritic cells and T cells from NTT and RTT Braf/Pten tumours. We identified that in RTT cell lines the MAPK pathway is reactivated and provide SLAM-seq data to determine transcriptional targets of MAPK pathway inhibition in NTT and RTT cell lines. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 GPL21626 236 Samples FTP download: GEO (BIGWIG, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132443/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548090 Series Accession: GSE132443 ID: 200132443 273. Single-cell analysis of the epigenomic and transcriptional landscape of innate immunity to seasonal and adjuvanted pandemic influenza vaccination in humans [ATAC-seq] (Submitter supplied) Human subjects were vaccinated with seasonal influenza vaccine at day 0 (TIV, 2014-2015). A subgroup of subjects (abx) received an additional oral antibiotic regimen, consisting of neomycin, vancomycin, and metronidazole, between days -3 and 1. CD14+ monocytes, mDCs, and pDCs were isolated from PBMCs of vaccinated subjects (3 antibiotic treated, 5 controls) at day -21 (BL), 0 and 30 using FACS. ATAC-seq was used to analyze the chromatin accessibility landscape in these cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 51 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA699545 Series Accession: GSE166180 ID: 200166180 274. Suppression of LBR by miR-340 disrupts chromatin, promotes cell senescence, and enhances senolysis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 18 Samples FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165469/ Series Accession: GSE165469 ID: 200165469 275. Suppression of LBR by miR-340 disrupts chromatin, promotes cell senescence, and enhances senolysis (ATAC-Seq) (Submitter supplied) The goal of this study was to identify accessible chromatin peaks in lamina-associated domains of senescent cells. To establish senescence we used ionizing radiation (IR), overexpression of miR-340-5p, and knockdown of Lamin B Receptor (LBR).One of the cellular processes influenced by microRNAs is senescence, a state of indefinite growth arrest triggered by sublethal cell damage. Here, through bioinformatic analysis and experimental validation, we identified miR-340-5p as a novel miRNA that foments cellular senescence. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165465/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA694653 Series Accession: GSE165465 ID: 200165465 276. Cell-to-cell variability in PAX3:FOXO1 expression determines tumorigenic potential in rhabdomyosarcoma (Submitter supplied) The rhabdomyosarcoma (RMS) cell pool is phenotypically and functionally heterogeneous. Low passage cell lines established from Myf6Cre,Pax3:Fkhr,p53 mouse RMS and primary human RMS cultures were used to demonstrate marked heterogeneity in PAX3:FOXO1 (P3F) expression at the single-cell level. In mouse Myf6Cre,Pax3:Fkhr,p53 RMS cells, expression of P3F is directed by the Pax3 promoter and coupled to an eYFP fluorescent marker. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA646365 Series Accession: GSE154452 ID: 200154452 277. Dissecting OCT4 defines the role of nucleosome binding in pluripotency maintenance (Submitter supplied) The aim of this study is to dissect the transcription factor OCT4 and reveal which parts of the protein are essential for interaction with nucleosomes and access to closed chromatin. We revealed that the DNA-binding domain mediates the interaction of OCT4 with nucleosomes. Remarkably, nucleosome-binding can be uncoupled from DNA-binding, diminishing the ability of OCT4 to access to closed chromatin, thus losing the pioneer function. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA706212 Series Accession: GSE168141 ID: 200168141 278. Genome-wide chromatin accessibility profiling of LT-HSCs isolated from WT and Phf6-deficient mice (Submitter supplied) The plant homeodomain 6 gene (PHF6) is frequently mutated in human T-cell acute lymphoblastic leukemia (T-ALL); however, its specific functional role in leukemia development remains to be established. Here, we show that loss of PHF6 is an early mutational event in leukemia transformation. Mechanistically, genetic inactivation of Phf6 in the hematopoietic system enhances hematopoietic stem cell (HSC) long-term self-renewal and hematopoietic recovery after chemotherapy by rendering Phf6 knockout HSCs more quiescent and less prone to stress-induced activation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA740268 Series Accession: GSE178739 ID: 200178739 279. Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits [snRNA-seq] (Submitter supplied) Skeletal muscle accounts for the largest proportion of human body mass, on average, and is a key tissue in complex diseases and mobility. It is composed of several different cell and muscle fiber types. Here, we optimize single-nucleus ATAC-seq (snATAC-seq) to map skeletal muscle cell-specific chromatin accessibility landscapes in frozen human and rat samples, and single-nucleus RNA-seq (snRNA-seq) to map cell-specific transcriptomes in human. more... Organism: Rattus norvegicus; Homo sapiens Type: Expression profiling by high throughput sequencing Platforms: GPL27452 GPL24676 7 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178734/ Series Accession: GSE178734 ID: 200178734 280. Human and rat skeletal muscle single-nuclei multi-omic integrative analyses nominate causal cell types, regulatory elements, and SNPs for complex traits [snATAC-seq] (Submitter supplied) Skeletal muscle accounts for the largest proportion of human body mass, on average, and is a key tissue in complex diseases and mobility. It is composed of several different cell and muscle fiber types. Here, we optimize single-nucleus ATAC-seq (snATAC-seq) to map skeletal muscle cell-specific chromatin accessibility landscapes in frozen human and rat samples, and single-nucleus RNA-seq (snRNA-seq) to map cell-specific transcriptomes in human. more... Organism: Homo sapiens; Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL27452 12 Samples FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178733/ Series Accession: GSE178733 ID: 200178733 281. Individual-specific functional epigenomics reveals genetic determinants of adverse metabolic effects of glucocorticoids (Submitter supplied) Glucocorticoids (GCs) are widely used as anti-inflammatory drugs, but their long-term use has severe metabolic side effects. Here, by treating multiple patient-derived adipose stem cell-derived adipocytes and iPSC-derived hepatocytes with the potent GC dexamethasone (Dex), we uncovered cell type-specific and individual-specific GC-dependent transcriptomes and glucocorticoid receptor (GR) cistromes. Patient-specific GR binding could be traced to single nucleotide polymorphisms (SNPs) that altered the binding motifs of GR or its cooperating factors. We also discovered another set of genetic variants that modulated Dex response through affecting chromatin accessibility or chromatin architecture. Several SNPs that altered Dex-regulated GR binding and gene expression controlled Dex-driven metabolic perturbations and, remarkably, predicted metabolic side-effects of GC-treated patients. These data validate a patient stem cell-based experimental framework to discover genetic variants that impact GR function and individual responses to GC drugs, with implications for developing personalized therapies. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 177 Samples FTP download: GEO (BIGWIG, HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA684576 Series Accession: GSE163061 ID: 200163061 282. Wdr5 (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL24247 43 Samples FTP download: GEO (BED, BIGWIG, BW, GTF, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178556/ Series Accession: GSE178556 ID: 200178556 283. Chromatin accessibility profiling of mouse embryonic stem cells and embryonic bodies using SFEBq differentiation methods upon Wdr5 and P53 deletion with or without WT or mutant hWDR5 rescue (Submitter supplied) This study describes time-course chromatin accessibility profiling of mouse ESC and embryonic bodies n Wdr5 and p53 knockout (with or without WT or mutant hWDR5 rescue) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 16 Samples FTP download: GEO (BED, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA739652 Series Accession: GSE178551 ID: 200178551 284. Chromatin Occupancy of AR, BRD4, and H3K27Ac in MR42D Cells in response to Enzalutamide (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL11154 54 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147877/ Series Accession: GSE147877 ID: 200147877 285. Chromatin Occupancy of AR, BRD4, and H3K27Ac in MR42D Cells in response to Enzalutamide [ATAC-seq] (Submitter supplied) In order to look at global chromatin accessibility in enzalutamide sensitive (V16D) and enzalutamide-resistant t-NEPC lines (MR42D), we treated these lines with enzalutamide or vehicle and performed an Assay for Transposase-Accessible Chromatin using Sequencing (ATAC-seq). Hyperaccessible regions in V16D were associated with metabolic pathways, whereas hyperaccesible regions in MR42D were associated with neuronal pathways, indicating that the chromatin conformation in these enzalutamide resistant cells is conducive to transdifferentiation to a neuronal t-NEPC phenotype. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622463 Series Accession: GSE147874 ID: 200147874 286. Low-input ATAC&mRNA-Seq: a simple and robust method for simultaneous dual-omics profiling with low cell number (Submitter supplied) Deciphering epigenetic regulation of gene expression requires measuring the epigenome and transcriptome jointly. However, multi-omics profiling remains challenging for low-input samples. Therefore, we developed low-input ATAC&mRNA-Seq, a simple and robust method for studying the role of chromatin structure in gene regulation in a single experiment with thousands of cells, to maximize insights from limited input material by obtaining ATAC-seq and mRNA-seq data simultaneously from the same cells with data quality comparable to conventional mono-omics assays. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL21626 13 Samples FTP download: GEO (BED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA694671 Series Accession: GSE165478 ID: 200165478 287. Aberrant expression of TRIM24 develops carcinosarcoma in vivo: a relevant model to study human metaplastic breast cancer (Submitter supplied) To identify chromatin accessibility in TRIM24-driven carcinosarcomas, we performed ATAC-Seq in primary cell line derived from TRIM24-driven mouse model. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA629632 Series Accession: GSE149685 ID: 200149685 288. Mechanisms underlying divergent responses of genetically distinct macrophages to IL-4 [ATAC-seq] (Submitter supplied) Mechanisms by which noncoding genetic variation influences gene expression remain only partially understood but are considered to be major determinants of phenotypic diversity and disease risk. Here, we evaluated effects of >50 million single-nucleotide polymorphisms and short insertions/deletions provided by five inbred strains of mice on the responses of macrophages to interleukin-4 (IL-4), a cytokine that plays pleiotropic roles in immunity and tissue homeostasis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 40 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA669980 Series Accession: GSE159626 ID: 200159626 289. ATAC-seq of embryonic motor neurons (Submitter supplied) ATAC-seq of Hb9:GFP e10.5 spinal motor neurons from C57/Bl6 mice Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178466/ Series Accession: GSE178466 ID: 200178466 290. ATAC-Seq of pDC Transcriptomes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178412/ Series Accession: GSE178412 ID: 200178412 291. Neonatal Thyroxine Activation Modifies Epigenetic Programming Of The Liver (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL21103 GPL24247 29 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162930/ Series Accession: GSE162930 ID: 200162930 292. Neonatal Thyroxine Activation Modifies Epigenetic Programming Of The Liver [ATAC-Seq] (Submitter supplied) In the neonatal liver, a peak of type 2 deiodinase (D2) activity accelerates local T3 production and the expression of thyroid hormone (TH)-responsive genes. Here we show that this acute increase in T3 signaling permanently modifies hepatic gene expression. Liver-specific Dio2 inactivation (Alb-D2KO) transiently increased H3K9me3 levels during post-natal days 1-5 (P1-P5) in discrete chromatin areas, and methylation of 1,508 DNA sites (H-sites) that remained in the adult mouse liver. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683869 Series Accession: GSE162929 ID: 200162929 293. Neonatal Thyroxine Activation Modifies Epigenetic Programming Of The Liver [RNA-Seq] (Submitter supplied) In the neonatal liver, a peak of type 2 deiodinase (D2) activity accelerates local T3 production and the expression of thyroid hormone (TH)-responsive genes. Here we show that this acute increase in T3 signaling permanently modifies hepatic gene expression. Liver-specific Dio2 inactivation (Alb-D2KO) transiently increased H3K9me3 levels during post-natal days 1-5 (P1-P5) in discrete chromatin areas, and methylation of 1,508 DNA sites (H-sites) that remained in the adult mouse liver. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL24247 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683644 Series Accession: GSE162890 ID: 200162890 294. Neonatal Thyroxine Activation Modifies Epigenetic Programming Of The Liver [ChIP-Seq] (Submitter supplied) In the neonatal liver, a peak of type 2 deiodinase (D2) activity accelerates local T3 production and the expression of thyroid hormone (TH)-responsive genes. Here we show that this acute increase in T3 signaling permanently modifies hepatic gene expression. Liver-specific Dio2 inactivation (Alb-D2KO) transiently increased H3K9me3 levels during post-natal days 1-5 (P1-P5) in discrete chromatin areas, and methylation of 1,508 DNA sites (H-sites) that remained in the adult mouse liver. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683636 Series Accession: GSE162887 ID: 200162887 295. RNA polymerase II is necessary for spatial chromatin reorganization following exit from mitosis [ATAC-Seq] (Submitter supplied) Mammalian chromosomes are three-dimensional entities shaped by converging and opposing forces acting on chromatin. Mitotic cell division induces drastic chromatin condensation, but following reentry into the G1 cell cycle phase, condensed chromosomes unwind to re-establish interphase organization. Here, we use a cell line allowing auxin-mediated degradation of RNA polymerase II to test its role in this transition. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672941 Series Accession: GSE160316 ID: 200160316 296. An integrated functional and clinical genomics approach reveal genes driving aggressive metastatic prostate cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL24676 16 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178330/ Series Accession: GSE178330 ID: 200178330 297. An integrated functional and clinical genomics approach reveal genes driving aggressive metastatic prostate cancer [ATAC-Seq] (Submitter supplied) Genomic sequencing of many thousands of tumors has revealed many genes associated with specific types of cancer. Similarly, large scale CRISPR functional genomics efforts have mapped genes required for proliferation or survival in hundreds of cancer cell lines. Despite this, for specific disease subtypes, such as metastatic prostate cancer, it is likely that there exist many undiscovered tumor specific genetic dependencies, such as prostate cancer specific drivers, that represent drug targets. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE178nnn/GSE178329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA738507 Series Accession: GSE178329 ID: 200178329 298. DOT1L complex regulates transcriptional initiation in human cells (Submitter supplied) DOT1L, the only H3K79 methyltransferase in human cells and a homolog of the yeast Dot1, normally forms a complex with AF10, AF17 and ENL/AF9, is dysregulated in most of the cases of mixed lineage leukemia (MLL) and is believed to regulate transcriptional elongation without much evidence. Here we show that the depletion of DOT1L reduced the global occupancy without affecting the traveling ratio or the elongation rate of Pol II, suggesting it not a major player in elongation. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL20795 GPL16791 GPL24676 70 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA677967 Series Accession: GSE161367 ID: 200161367 299. Chromatin Remodeling of Colorectal Cancer Liver Metastasis is Mediated by an HGF-PU.1-DPP4 Axis (Submitter supplied) Integrative analysis of colorectal cancer (CRC) ATAC-seq and RNA-seq revealed an epigenomic and transcriptomic remodeling during liver metastasis. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL20301 14 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641206 Series Accession: GSE153016 ID: 200153016 300. BRD9-containing non-canonical BAF chromatin remodeling complex acts as a barrier to somatic cell reprogramming (ATAC-Seq) (Submitter supplied) Epigenetic reprogramming requires extensive remodeling of chromatin landscapes to silence gene expression programs which sustain cell identity. ATP-dependent chromatin-remodeling complexes are important regulators of chromatin structure and gene expression; however, the role of Bromodomain containing protein 9 (BRD9) and the associated ncBAF (non-canonical BRG1-associated factors) complex in somatic cell reprogramming remains unknown. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678984 Series Accession: GSE161639 ID: 200161639 301. The FLI portion of EWS/FLI contributes a transcriptional regulatory function that is distinct from its DNA-binding function in Ewing sarcoma [ATAC-seq] (Submitter supplied) The purpose of this study was to compare the relevance of the FLI portion of EWS/FLI in the ability of the protein to act as a pioneer factor in Ewing sarcoma cells. EWS/FLI cDNA constructs including various deletions of the FLI portion were virally transduced into cells and we sought to determine the ATAC profile of each. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA674797 Series Accession: GSE160895 ID: 200160895 302. Differential usage of Zeb2 enhancer distinguishes adult and embryonic hematopoiesis [bulkATAC-seq] (Submitter supplied) ATAC-seq of Zeb2 WT and Zeb2 enhancer KO B cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 5 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704314 Series Accession: GSE167322 ID: 200167322 303. Deacetylation of HP1g enhances multiple myeloma drug resistance through DNA damage repair and liquid-liquid phase separation (ATAC-Seq) (Submitter supplied) Functional crosstalk between histone modifications and chromatin remodeling has emerged as a key regulatory mode of transcriptional control during drug resistance, but the underlying mechanisms are not fully understood. Here we demonstrate that HP1g coordinates histone H3 lysine 9 trimethylation (H3K9me3) to regulate chromatin dynamic and gene transcription during bortezomib resistance.Mechanistically, HP1g can interact with H3K9me3, its CD domain is responsible to read H3K9me3 to serve its function. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA736684 Series Accession: GSE176545 ID: 200176545 304. The clinical significance of regulatory variants at the GDF5 locus in joint disease (Submitter supplied) Genetic variants in cis-regulatory regions of GDF5 can lead to common joint diseases with high degrees of joint specificity. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 5 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641883 Series Accession: GSE153260 ID: 200153260 305. ATAC-seq analysis of C1qbp sufficient and deficient CD8+ T cells sorted from mice post infection with LCMV Armstrong (Submitter supplied) This study is aimed to explore whether C1qbp deficiency affects the epigenetic modification during the differentiation stage of CD8+ T cells. Transferred WT and C1qbp KO P14 cells sorted from the spleen of donor mice on day 5 post-infection with LCMV Armstrong were collected and treated for ATAC-seq. ATAC-Seq analysis provided sufficient but not necessary evidence of epigenetic changes between WT and C1qbp KO CD8+ T cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176369/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA736023 Series Accession: GSE176369 ID: 200176369 306. ATAC-seq profiling of Nfat5 KO and WT in Mus musculus macrophages (Submitter supplied) ATAC-seq profiling of Nfat5 KO and wild type macrophages derived from bone marrow (primary cells), treated or not with Lipopolysaccharide (LPS). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437142 Series Accession: GSE111476 ID: 200111476 307. Systematic analysis of monoallelic gene expression and chromatin accessibility across multiple tissues in hybrid mice (Submitter supplied) In diploid eukaryotic organisms, both alleles of each autosomal gene are usually assumed to be simultaneously expressed at similar levels. However, some genes can be expressed preferentially or strictly from a single allele, a process known as monoallelic expression. Classic monoallelic expression of X-chromosome-linked genes, olfactory receptor genes and developmentally imprinted genes is the result of epigenetic modifications. more... Organism: Mus musculus x Mus spretus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL30236 6 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA735652 Series Accession: GSE176259 ID: 200176259 308. Genome-wide analysis of chromatin landscape in murine bone marrow derived eosinophils (Submitter supplied) We applied a global approach using broad-range, next-generation sequecing to identify a repertoire of eosinophil-specific enhancers. H3K4me1, H3K4me3, H3K27ac and PU.1 ChIPseq data was paired with ATAC and gene expression data from bmEos. Transcription factor motif analysis revealed enrichment for PU.1 in eosinophil enhancers, and ChIP-seq confirmed PU.1 binding in enhancer of genes highly expressed in eosinophils. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL24247 15 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605431 Series Accession: GSE144951 ID: 200144951 309. Genomic characterization of cisplatin response uncovers priming of cispla-tin-induced genes in a resistant cell line (Submitter supplied) We conducted a comprehensive genomic characterization of the cisplatin sensitive A2780 ovarian cancer cell line compared to A2780cis, its resistant derivative. The data includes eXcision Repair-sequencing (XR-seq) to map cisplatin repair,RNA-Seq to characterize gene expression and ATAC-Seq to detect changes in chromatin accessibility. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL16791 GPL18573 18 Samples FTP download: GEO (BW, CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA724680 Series Accession: GSE173201 ID: 200173201 310. Runx1-deficiency induced changes in transcription and chromatin accessibility in mK4 cells (Submitter supplied) We report the genome-wide effects of Runx1-deficiency in mK4 cells through RNA-seq, ATAC-seq, and ChIP-seq for Runx1 and Runx2. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL28457 GPL21103 27 Samples FTP download: GEO (BED, BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663918 Series Accession: GSE158093 ID: 200158093 311. GATA6 defines endoderm fate by controlling chromatin accessibility during differentiation of human induced pluripotent stem cells [ATAC-seq] (Submitter supplied) Investigation of the role played by GATA6 in establishing the definitive endoderm chromatin accessbility profile. We used pluripotent stem cells as a model of early development. We derived GATA6-/- pluripotent cells with an inducible GATA6 construct that permits exongenous GATA6 cDNA expression upon supplmentation of doxycycline. We differentiated GATA6 +/+ and GATA6-/- (with and without doxycyline) cells to definitive endoderm and analyzed the chromatin profile using ATAC-seq. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 13 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA656444 Series Accession: GSE156018 ID: 200156018 312. Che-1/AATF sustains cell growth and global transcription in Multiple Myeloma through the maintenance of open chromatin structure. [ATAC-Seq, mouse] (Submitter supplied) This series contains the ATAC-seq data for control and Che-1 silencing in the Multiple Myeloma mice model. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 7 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA495146 Series Accession: GSE120964 ID: 200120964 313. Che-1/AATF sustains cell growth and global transcription in Multiple Myeloma through the maintenance of open chromatin structure [ATAC-Seq] (Submitter supplied) Tumor transformation is the result of genetic modifications that alter gene transcription, thus producing a specific oncogenic program. However, in recent years, several exciting discoveries have shown that also aberrant epigenetic modifications play a major role in the genesis and progression of cancer. Multiple myeloma (MM) is a cancerous pathology resulting from the clonal expansion of plasma cells, and characterized by abnormal production and secretion of antibody proteins. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391947 Series Accession: GSE100494 ID: 200100494 314. RNA- and ATAC-seq data from hESCs differentiated with Wnt and Activin with or without CPI-203 (Submitter supplied) We report genome-wide changes in chromatin state and transcriptional output following Wnt-priming and subsequent Activin induced differentiation of human embryonic stem cell and the effects of BET bromodomain inhibition during Wnt-priming. The two signals, Wnt and Activin, although provided sequentially, result in stable mesendoderm differentiation (Yoney et al., 2018). Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 30 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE176nnn/GSE176222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA735402 Series Accession: GSE176222 ID: 200176222 315. ARID1A deficiency promotes pancreatic tumorigenesis by reducing KRAS-induced senescence (ATAC-Seq) (Submitter supplied) ARID1A is one of the most frequently mutated epigenetic regulators in a wide spectrum of cancers. In this study, we identified the anti-senescence effect of ARID1A deficiency in the progression of pancreatic intraepithelial neoplasia (PanIN) by profiling the transcriptome of individual PanINs in the mouse model. Interestingly, we found that ARID1A deficiency activates the transcription of Aldehyde dehydrogenase 1 family, member A1 (ALDH1A1), which play essential roles in attenuating the senescence by significantly reducing reactive oxygen species (ROS) induced by oncogenic KRAS. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673201 Series Accession: GSE160440 ID: 200160440 316. Dynamic landscape of chromatin accessibility and transcriptomic changes during differentiation of human embryonic stem cells into dopaminergic neurons (Submitter supplied) We profiled chromatin accessibility and gene expression changes along the differentiation of human pluripotent stem cells to dopaminergic neurons. We integrated the epigenomic and transcriptomic profiles to infer the activity of transcription factors (TFs) and DNA regulatory regions such as enhancers and long non-coding RNAs. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL15520 13 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153005/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641151 Series Accession: GSE153005 ID: 200153005 317. HyDrop: droplet-based scATAC-seq and scRNA-seq using dissolvable hydrogel beads (Submitter supplied) We developed HyDrop, a new droplet microfluidic single-cell sequencing protocol for single-cell ATAC-seq and single-cell RNA-seq. We applied HyDrop-ATAC to flash-frozen mouse cortex and generated 7996 single-cell chromatin accessibility profiles. We applied HyDrop-RNA to flash-frozen mouse cortex and generated 9508 single-cell transcriptomes. We also applied HyDrop-RNA to a small population of FAC-sorted neurons from the Drosophila brain to demonstrate the protocol's applicability to low-input samples. more... Organism: Drosophila melanogaster; Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL30172 GPL30203 GPL30202 18 Samples FTP download: GEO (BW, TAR, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA733185 Series Accession: GSE175684 ID: 200175684 318. Histone H4 lysine 20 mono-methylation directly facilitates chromatin ‘openness’ and promotes transcription of housekeeping genes (ATAC-seq_DRB) (Submitter supplied) To study the role of Histone H4 lysine 20 mono- and tri-methylation (H4K20me1, H4K20me3) in relationship to chromatin accessibility and gene expression, we report the application of high-throughput profiling of these marks in synchronized and asynchronous Human Osteosarcoma U2OS and asynchronous Mouse Fibroblast (MEF) cells with Set8 knockdown or control siRNA treatment. We find that H4K20me1 contributes to the open chromatin structure at active genes. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 16 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA725179 Series Accession: GSE173313 ID: 200173313 319. Histone H4 lysine 20 mono-methylation directly facilitates chromatin ‘openness’ and promotes transcription of housekeeping genes (ATAC-seq) (Submitter supplied) To study the role of Histone H4 lysine 20 mono- and tri-methylation (H4K20me1, H4K20me3) in relationship to chromatin accessibility and gene expression, we report the application of high-throughput profiling of these marks in synchronized and asynchronous Human Osteosarcoma U2OS and asynchronous Mouse Fibroblast (MEF) cells with Set8 knockdown or control siRNA treatment. We find that H4K20me1 contributes to the open chromatin structure at active genes. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 28 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA657060 Series Accession: GSE156215 ID: 200156215 320. Butterfly wing pattern mimicry radiated via parallel evolution of ancient, pleiotropic enhancers [ATAC-Seq] (Submitter supplied) Aposematic color pattern mimicry in Heliconius butterflies provides a well-known example of adaptation via selection on a few genes of large effect. To understand how selection at individual genes can drive the evolution of complex traits, we functionally characterized five novel enhancers of the color pattern gene, optix. In Heliconius erato we found that wing pattern enhancers are largely ancestral, pleiotropic, functionally interdependent, and introgressed between populations. more... Organism: Heliconius melpomene rosina; Heliconius melpomene aglaope Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL25926 GPL25925 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509731 Series Accession: GSE123700 ID: 200123700 321. Epigenomic Landscape and 3D Genome Structure in Pediatric High-Grade Glioma (Submitter supplied) Pediatric high-grade gliomas (pHGGs), including glioblastoma multiforme (GBM) and diffuse intrinsic pontine glioma (DIPG), are highly morbid childhood brain tumors. Even with treatment, overall survival is poor, making pHGG the number one cause of cancer death in children. Up to 80% of DIPGs harbor a somatic missense mutation in genes encoding Histone H3 proteins. To investigate whether this H3K27M mutation is associated with distinct chromatin structure that alters transcription regulation, we generated the first high-resolution Hi-C maps of pHGG cell lines and tumor tissue. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL24676 GPL20795 94 Samples FTP download: GEO (BIGWIG, BW, HIC, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA684123 Series Accession: GSE162976 ID: 200162976 322. PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Strongylocentrotus purpuratus Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20965 21 Samples FTP download: GEO (BIGWIG, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160463/ Series Accession: GSE160463 ID: 200160463 323. PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ChIP-seq) (Submitter supplied) PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers. Organism: Strongylocentrotus purpuratus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20965 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673238 Series Accession: GSE160462 ID: 200160462 324. PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (ATAC-Seq) (Submitter supplied) PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers. Organism: Strongylocentrotus purpuratus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20965 5 Samples FTP download: GEO (BED, BIGWIG, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673239 Series Accession: GSE160461 ID: 200160461 325. PRO-seq, ATAC-seq, and Pol II ChIP-seq in 20 hour sea urchin embryos (PRO-Seq) (Submitter supplied) PRO-seq, ATAC-seq, and Pol II ChIP-seq signals are used to predict active developmental enhancers. Organism: Strongylocentrotus purpuratus Type: Other Platform: GPL20965 10 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673237 Series Accession: GSE160460 ID: 200160460 326. Chromatin-directed proteomics-identified network of endogenous androgen receptor in prostate cancer cells (Submitter supplied) Treatment of prostate cancer confronts resistance to androgen receptor (AR)-targeted therapies. AR-associated coregulators and chromatin proteins hold a great potential for novel therapy targets. Here, we employed a powerful chromatin-directed proteomics approach termed ChIP-SICAP to uncover the composition of chromatin protein network, the chromatome, around endogenous AR in castration resistant prostate cancer (CRPC) cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18573 53 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA560945 Series Accession: GSE136016 ID: 200136016 327. Hybrid stomach-intestinal chromatin states underlie human Barrett’s metaplasia (Submitter supplied) Background & Aims: Tissue metaplasia is uncommon in adults because established cis-element programs resist rewiring. In Barrett’s esophagus, the distal esophageal mucosa acquires predominantly intestinal character, with notable gastric features, and is predisposed to develop invasive cancers. We sought to understand the chromatin underpinnings of Barrett’s metaplasia and why it commonly displays simultaneous gastric and intestinal properties. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL18573 40 Samples FTP download: GEO (BED, BW, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380898 Series Accession: GSE97178 ID: 200097178 328. Chromatin accessibility data in Wild Type and FGD5-AS1 knockdown CCC-HEH-2 cells (ATAC-Seq) (Submitter supplied) Purpose: According to the previous analysis results of gene regulation in fetal heart tissues with tetralogy of Fallot (ToF), we constructed the ceRNA mediated network driven by lncRNAs using a causal inference framework based on the expression correlations and validated miRNA-lncRNA/mRNA evidences. Totally 4 lncRNAs were identified as hub lncRNAs in the network, and FGD5-AS1 was focused for further loss-of-function investigation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA669008 Series Accession: GSE159464 ID: 200159464 329. Functional characteriation of histone variant H2A.B in Hodgkin lymphoma (Submitter supplied) The fact that the testis-specific H2A.B is ectopically expressed in Hodgkin lymphoma (HL) and its derived cell lines implicates H2A.B in having a role in oncogenesis (either as an oncogene or a tumour suppressor) similar to other epigenetic regulators of the testis. In order to understand the mechanism of H2A.B-mediated epigenetic regulation in Hodgkin lymphoa, the epigenomic profiles of pan-H2A.B and major H2A.B post-translational modificaitons were investigated using the CUT&RUN method. Organism: Homo sapiens Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL18573 28 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA664403 Series Accession: GSE158239 ID: 200158239 330. Identification of 22 novel susceptibility loci associated with testicular germ cell tumors [ATAC-seq] (Submitter supplied) To investigate the role of the testicular germ cell tumor cells in complex traits, we generated ATAC-seq and Promoter Focused Capture C to gain insight into the gene regulatory arcitecture contacting promoters in an testicular cell line NT2-D1 model of testicular cancer Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 12 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA732181 Series Accession: GSE175367 ID: 200175367 331. Identification of 22 novel susceptibility loci associated with testicular germ cell tumors [Capture C] (Submitter supplied) To investigate the role of the testicular germ cell tumor cells in complex traits, we generated ATAC-seq and Promoter Focused Capture C to gain insight into the gene regulatory arcitecture contacting promoters in an ttesticular cell line NT2-D1 model of testicular cancer Organism: Homo sapiens Type: Other Platform: GPL24676 3 Samples FTP download: GEO (IBED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA732182 Series Accession: GSE175366 ID: 200175366 332. Machine learning sequence prioritization for cell type-specific enhancer design (Submitter supplied) Recent discoveries of extreme cellular diversity in the brain warrant rapid development of technologies to access specific cell populations, enabling characterization of their roles in behavior and in disease states. Available approaches for engineering targeted technologies for new neuron subtypes are low-yield, involving intensive transgenic strain or virus screening. Here, we introduce SNAIL (Specific Nuclear-Anchored Independent Labeling), a new virus-based strategy for cell labeling and nuclear isolation from heterogeneous tissue. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 44 Samples FTP download: GEO (BIGWIG, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA720048 Series Accession: GSE171549 ID: 200171549 333. Transcriptomic and epigenetic characterization of PVT neurons in bipolar disorder model mouse. (Submitter supplied) We have previosuly shown that our Polg(D181A) show spontaneous depressive episodes as a result of mtDNA mutations, but we do not know the cellular mechanisms that link mtDNA mutations to behavioural changes. We hypothesized that mtDNA mutation-induced mitochondrial dysfunction in PVT causes a dysregulation of epigenetics, causing a transcriptional response which ffects neuronal function and ultimately causes the depressive phenotype. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 44 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA715725 Series Accession: GSE169212 ID: 200169212 334. Aurora A kinase Inhibition Reprograms Metabolism dependent on PGC1α to Drive Synthetic Lethality with Fatty Acid Oxidation Inhibition in Glioblastoma [ChIP-Seq] (Submitter supplied) By integration of transcriptome, CHIP-seq, ATAC-seq, proteomic and metabolite screening followed by carbon tracing (U-13C-Glucose, U-13C-Glutamine and U-13C-Palmitic acid) and extracellular flux analysis we provided evidence that genetic (shRNA and CRISPR/Cas9) and pharmacological (Alisertib) AURKA inhibition elicited substantial metabolic reprogramming supported in part by inhibition of MYC targets and concomitant activation of PPARA signaling. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678736 Series Accession: GSE161573 ID: 200161573 335. Aurora A kinase Inhibition Reprograms Metabolism dependent on PGC1α to Drive Synthetic Lethality with Fatty Acid Oxidation Inhibition in Glioblastoma [ATAC-Seq] (Submitter supplied) By integration of transcriptome, CHIP-seq, ATAC-seq, proteomic and metabolite screening followed by carbon tracing (U-13C-Glucose, U-13C-Glutamine and U-13C-Palmitic acid) and extracellular flux analysis we provided evidence that genetic (shRNA and CRISPR/Cas9) and pharmacological (Alisertib) AURKA inhibition elicited substantial metabolic reprogramming supported in part by inhibition of MYC targets and concomitant activation of PPARA signaling. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678735 Series Accession: GSE161572 ID: 200161572 336. Muscle regeneration controlled by a designated DNA dioxygenase (ATAC-Seq) (Submitter supplied) DNA methylation plays critical roles in regulating muscle cell fate determination and myogenesis. Tet dioxygenases are responsible for active DNA demethylation. The functions of Tet proteins in muscle regeneration have not been well characterized. Here we find that Tet2 is required for complete regeneration after muscle injury. Loss of Tet2 in myoblasts leads to reduced fusion index and thinner myofibers. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 4 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA666126 Series Accession: GSE158648 ID: 200158648 337. Disruption of developmental enhancer and PRC2 function by K27M in childhood glioma (Submitter supplied) Diffuse Intrinsic Pontine Glioma (DIPG) is a universally fatal childhood brain tumour which frequently carries a mutation in genes encoding histone H3. These mutations lead to a lysine-to-methionine (K-to-M) substitution at position 27 (H3K27M) within the histone H3 tail and initiate global shifts in the abundance of Polycomb Repressive Complex 2 (PRC2) mediated H3K27 methylation (me) and P300/CBP mediated acetylation (ac). more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 78 Samples FTP download: GEO (BW, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA645695 Series Accession: GSE154267 ID: 200154267 338. Impairment of human terminal erythroid differentiation by histone deacetylase 5 deficiency (Submitter supplied) Histone deacetylases (HDACs) are a group of enzymes catalyzing the removal of acetyl groups from histone and non-histone proteins. HDACs have been shown to play diverse functions in a wide range of biological processes. However, their roles in mammalian erythropoiesis remain to be fully defined. We show here that of the eleven classic HDAC family members, six of them (HDAC 1,2,3 and HDAC 5,6,7) are expressed in human erythroid cells with HDAC5 significantly up regulated during terminal erythroid differentiation. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 24 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637077 Series Accession: GSE151743 ID: 200151743 339. The TFIID subunit TAF4 is required for pancreatic beta cell function and identity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 18 Samples FTP download: GEO (BROADPEAK, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151366/ Series Accession: GSE151366 ID: 200151366 340. The TFIID subunit TAF4 is required for pancreatic beta cell function and identity [single-cell RNA-seq] (Submitter supplied) We selectively inactivated the Taf4 subunit of general transcription factor TFIID in adult murine pancreatic beta cells (BCs). Taf4 inactivation rapidly diminishes expression of critical genes involved in BC function leading to increased glycaemia, lowered blood insulin levels, defective glucose-stimulated insulin secretion and in the longer term reduced BC mass through apoptosis of a subpopulation of BCs. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 3 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635633 Series Accession: GSE151365 ID: 200151365 341. The TFIID subunit TAF4 is required for pancreatic beta cell function and identity [RNA-seq] (Submitter supplied) We selectively inactivated the Taf4 subunit of general transcription factor TFIID in adult murine pancreatic beta cells (BCs). Taf4 inactivation rapidly diminishes expression of critical genes involved in BC function leading to increased glycaemia, lowered blood insulin levels, defective glucose-stimulated insulin secretion and in the longer term reduced BC mass through apoptosis of a subpopulation of BCs. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635634 Series Accession: GSE151364 ID: 200151364 342. The TFIID subunit TAF4 is required for pancreatic beta cell function and identity [ATAC-seq] (Submitter supplied) We selectively inactivated the Taf4 subunit of general transcription factor TFIID in adult murine pancreatic beta cells (BCs). Taf4 inactivation rapidly diminishes expression of critical genes involved in BC function leading to increased glycaemia, lowered blood insulin levels, defective glucose-stimulated insulin secretion and in the longer term reduced BC mass through apoptosis of a subpopulation of BCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 3 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151363/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635632 Series Accession: GSE151363 ID: 200151363 343. Ezh2 is essential for the generation of functional yolk sac derived erythro-myeloid progenitors [ATAC-seq] (Submitter supplied) Yolk sac (YS) hematopoiesis is critical for the survival of the embryo and a major source of tissue-resident macrophages that persist into adulthood. Here we report that the epigenetic regulator Ezh2 is essential for YS hematopoiesis but dispensable for subsequent aorta–gonad–mesonephros (AGM) blood development. Loss of Ezh2 activity in hemogenic endothelium (HE) leads to the generation of phenotypically intact but functionally deficient erythro-myeloid progenitors (EMP). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631726 Series Accession: GSE150292 ID: 200150292 344. Mutational synergy during leukemia induction remodels chromatin accessibility, modification and genome topology to alter gene expression (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL21103 GPL17021 65 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146669/ Series Accession: GSE146669 ID: 200146669 345. Mutational synergy coordinately remodels chromatin accessibility, enhancer landscape and 3-Dimensional DNA topology to alter gene expression during leukemia induction (RNA-seq) (Submitter supplied) Altered transcription is a cardinal feature of acute myeloid leukemia (AML), however, exactly how mutations synergise to remodel the epigenetic landscape and rewire 3-Dimensional (3-D) DNA topology is unknown. We have utilized an allelic series of mice carrying the most common mutations in AML, namely Flt3-ITD and Npm1c. These model different “transition states” (normal: wild-type (WT); pre-malignant: single mutant (SM) with either Flt3-ITD or Npm1c; malignant: double mutant (DM)) during AML induction. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA611594 Series Accession: GSE146668 ID: 200146668 346. Mutational synergy coordinately remodels chromatin accessibility, enhancer landscape and 3-Dimensional DNA topology to alter gene expression during leukemia induction (ChIP-seq) (Submitter supplied) Altered transcription is a cardinal feature of acute myeloid leukemia (AML), however, exactly how mutations synergise to remodel the epigenetic landscape and rewire 3-Dimensional (3-D) DNA topology is unknown. We have utilized an allelic series of mice carrying the most common mutations in AML, namely Flt3-ITD and Npm1c. These model different “transition states” (normal: wild-type (WT); pre-malignant: single mutant (SM) with either Flt3-ITD or Npm1c; malignant: double mutant (DM)) during AML induction. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 35 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA611597 Series Accession: GSE146663 ID: 200146663 347. Mutational synergy coordinately remodels chromatin accessibility, enhancer landscape and 3-Dimensional DNA topology to alter gene expression during leukemia induction (pCHiC) (Submitter supplied) Altered transcription is a cardinal feature of acute myeloid leukemia (AML), however, exactly how mutations synergise to remodel the epigenetic landscape and rewire 3-Dimensional (3-D) DNA topology is unknown. We have utilized an allelic series of mice carrying the most common mutations in AML, namely Flt3-ITD and Npm1c. These model different “transition states” (normal: wild-type (WT); pre-malignant: single mutant (SM) with either Flt3-ITD or Npm1c; malignant: double mutant (DM)) during AML induction. more... Organism: Mus musculus Type: Other Platforms: GPL17021 GPL21103 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA611598 Series Accession: GSE146662 ID: 200146662 348. Mutational synergy coordinately remodels chromatin accessibility, enhancer landscape and 3-Dimensional DNA topology to alter gene expression during leukemia induction (ATAC-seq) (Submitter supplied) Altered transcription is a cardinal feature of acute myeloid leukemia (AML), however, exactly how mutations synergise to remodel the epigenetic landscape and rewire 3-Dimensional (3-D) DNA topology is unknown. We have utilized an allelic series of mice carrying the most common mutations in AML, namely Flt3-ITD and Npm1c. These model different “transition states” (normal: wild-type (WT); pre-malignant: single mutant (SM) with either Flt3-ITD or Npm1c; malignant: double mutant (DM)) during AML induction. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 10 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA611512 Series Accession: GSE146616 ID: 200146616 349. Functional in vivo characterization of zebrafish sox10 enhancers in melanoma and neural crest (Submitter supplied) We analyzed the epigenetic landscape of five bulk (unsorted) melanoma tumors in a zebrafish melanoma model using ATAC-seq. We find that areas of open chromatin are consistent between tumor samples. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 5 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607534 Series Accession: GSE145551 ID: 200145551 350. Chromatin and transcriptome remodeling under EGFR chemical inhibition in lung cancer (ATAC-seq) (Submitter supplied) We present paired ATAC and RNA-sequencing from EGFR-driven lung cancer cell lines genetically modified to lose tumor suppressors RB1 and/or PTEN, and study the acute response of these cell lines to FDA-approved chemical inhibitors of EGFR Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL16791 32 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591705 Series Accession: GSE140940 ID: 200140940 351. The Molecular and Epigenetic Mechanisms of Innate Lymphoid Cell (ILC) Memory and its Relevance for Asthma (Submitter supplied) Repetitive exposure of Rag1-/- mice to the Alternaria allergen extract generated a form of memory that elicited an asthma-like response upon a subthreshold recall challenge 3-15 weeks later. This memory was associated with lung ICOS+ST2+ILC2s. Genetic, pharmacologic and antibody-mediated inhibition, and adoptive transfer established an essential role for ILC2s in memory-driven asthma. ATAC-seq demonstrated a distinct epigenetic landscape of memory ILC2s, and identified Bach2 and AP1 (JunD and Fosl2) motifs as major drivers of altered gene accessibility. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24247 GPL17021 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA722533 Series Accession: GSE172258 ID: 200172258 352. Extensive epigenetic priming in multipotent progenitors precedes lineage specification in B-lymphocyte development. (Submitter supplied) B-lymphocyte development is dependent on the interplay between the chromatin landscape and lineage specific transcription factors. It has been suggested that B-lineage commitment is associated with major changes in the nuclear chromatin environment proposing a critical role for lineage specific transcription factors in the formation of the epigenetic landscape. In this report we have used chromosome conformation capture in combination with ATAC-seq analysis to enable highly efficient annotation of both proximal and distal transcriptional control elements to genes activated in B-lineage specification. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19057 54 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683602 Series Accession: GSE162858 ID: 200162858 353. High-content single-cell combinatorial indexing (Submitter supplied) We describe a new generalizable library generation chemistry with increased efficiency that is amendable to tagmentation-based split-pool barcoding strategies, such as single-cell combinatorial indexing (sci). Symmetrical strand sci (‘s3’) uses a novel uracil-based adapter switching approach that provides an improved rate of conversion of source DNA into viable sequencing library fragments following tagmentation. more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL24247 GPL24676 6 Samples FTP download: GEO (BED, CSV, RDS, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174226/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA728882 Series Accession: GSE174226 ID: 200174226 354. ATAC-Seq of foetal blood progenitors (Submitter supplied) Chromatin accessibility was assessed by ATAC-Seq in lymphoid-primed multipotent progenitors (LMPPs) from human foetal livers (FLs) and mouse wild-type FLs as well as FLs from mouse embryos that express the oncofusion Mll-AF4 in the definitive blood system. The aim of this study was to establish whether overall chromatin accessibility at key haematopoietic sites and loci that have been linked to leukaemia are differentially accessible in human vs mouse LMPPs and whether this is altered by the expression of the Mll-AF4 oncofusion. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21273 GPL20795 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168438/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA707417 Series Accession: GSE168438 ID: 200168438 355. KLF4 Recruits SWI/SNF to Increase Chromatin Accessibility and Reprogram the Endothelial Enhancer Landscape under Laminar Shear Stress (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL24676 GPL20301 69 Samples FTP download: GEO (BEDPE) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152900/ Series Accession: GSE152900 ID: 200152900 356. KLF4 Recruits SWI/SNF to Increase Chromatin Accessibility and Reprogram the Endothelial Enhancer Landscape under Laminar Shear Stress [ATAC-seq caMEK5] (Submitter supplied) Physiologic laminar shear stress (LSS) induces an endothelial gene expression profile that is vasculo-protective. In this report, we delineate how LSS mediates changes in the epigenetic landscape to promote this beneficial response. We show that under LSS, KLF4 interacts with the SWI/SNF nucleosome remodeling complex to increase accessibility at enhancer sites that promote expression of homeostatic endothelial genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640866 Series Accession: GSE152891 ID: 200152891 357. KLF4 Recruits SWI/SNF to Increase Chromatin Accessibility and Reprogram the Endothelial Enhancer Landscape under Laminar Shear Stress [ATAC-seq LSS] (Submitter supplied) Physiologic laminar shear stress (LSS) induces an endothelial gene expression profile that is vasculo-protective. In this report, we delineate how LSS mediates changes in the epigenetic landscape to promote this beneficial response. We show that under LSS, KLF4 interacts with the SWI/SNF nucleosome remodeling complex to increase accessibility at enhancer sites that promote expression of homeostatic endothelial genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640864 Series Accession: GSE152890 ID: 200152890 358. KLF4 Recruits SWI/SNF to Increase Chromatin Accessibility and Reprogram the Endothelial Enhancer Landscape under Laminar Shear Stress [ATAC siKLF] (Submitter supplied) Physiologic laminar shear stress (LSS) induces an endothelial gene expression profile that is vasculo-protective. In this report, we delineate how LSS mediates changes in the epigenetic landscape to promote this beneficial response. We show that under LSS, KLF4 interacts with the SWI/SNF nucleosome remodeling complex to increase accessibility at enhancer sites that promote expression of homeostatic endothelial genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640865 Series Accession: GSE152889 ID: 200152889 359. Characterization of human erythropoiesis using ex vivo differentiation of CD34 HSC (ATAC-seq) (Submitter supplied) Genome Wides Association Studies (GWAS) have identified tens of thousands of associations between human genetic variation and common disease. Despite the abundance of GWAS associations, functional identification and characterization of causative variants and effector genes remains a challenging prospect. Human erythropoiesis provides a highly tractable model system for the development of tools for GWAS analysis. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 35 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA517962 Series Accession: GSE125922 ID: 200125922 360. ATAC-seq of mice liver upon different diet treatment (Submitter supplied) ATAC-seq was performed using mice liver from chow diet, western diet or high fat diet treatment. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 15 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157907/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663444 Series Accession: GSE157907 ID: 200157907 361. Revisiting the Hayflick Limit: Insights from an Integrated Analysis of Changing Transcripts, Proteins, Metabolites, and Chromatin (Submitter supplied) Replicative senescence (RS) as a model has become the central focus of research into cellular aging in vitro. Despite decades of study, this process through which cells cease dividing is not fully understood in culture, and even much less so in vivo during development and with aging. Here, we revisit Hayflick’s original observation of RS in WI-38 human fetal lung fibroblasts equipped with a battery of high dimensional modern techniques and analytical methods to deeply profile the process of RS across each aspect of the central dogma and beyond. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 147 Samples FTP download: GEO (BED, BW, H5AD, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175533/ Series Accession: GSE175533 ID: 200175533 362. ATAC-seq in cultured renin lineage cells with the Lmna gene knockout. (Submitter supplied) ATAC-seq was performed to identify the effects in the knockout of the Lmna gene in renin lineage cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704857 Series Accession: GSE167522 ID: 200167522 363. Targeted inhibition of GFI1/KDM1A combined with BET inhibitor augments lethal activity against AML including post-MPN sAML cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL20301 59 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160319/ Series Accession: GSE160319 ID: 200160319 364. Targeted inhibition of GFI1/KDM1A combined with BET inhibitor augments lethal activity against AML including post-MPN sAML cells [ChIP-seq] (Submitter supplied) To determine the impact of inhibition of KDM1A/LSD1 through genetic manipulation or with irreversible LSD1 inhibitors on global chromatin accessibility and occupancy of H3K27Ac and BRD4 in AML and post-MPN sAML cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 16 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672943 Series Accession: GSE160318 ID: 200160318 365. Targeted inhibition of GFI1/KDM1A combined with BET inhibitor augments lethal activity against AML including post-MPN sAML cells [ATAC-seq] (Submitter supplied) To determine the impact of inhibition of KDM1A/LSD1 through genetic manipulation or with irreversible LSD1 inhibitors on global chromatin accessibility and occupancy of H3K27Ac and BRD4 in AML and post-MPN sAML cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 14 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672931 Series Accession: GSE160309 ID: 200160309 366. Regulation of cortical folding by niche progenitor cells that co-express cross-repressive transcription factors Neurog2 and Ascl1 (Submitter supplied) Humans exemplify gyrencephalic species with folded cerebral cortices, contrasting with lissencephalic mammals such as mice. Here we investigated how proneural genes Neurog2 and Ascl1 control cortical folding by regulating neurogenic patterns. Cortical neural progenitor cells (NPCs) stratify into four pools (proneural negative, Neurog2+, Ascl1+, double+) that are distributed evenly in mouse cortices and modular in gyrencephalic macaque cortices and pseudo-folded human cerebral organoids. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (BED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA328089 Series Accession: GSE84120 ID: 200084120 367. ecDNA hubs drive cooperative intermolecular oncogene expression [ATAC-Seq] (Submitter supplied) Extrachromosomal DNA (ecDNA) is prevalent in human cancers and mediates high oncogene expression through gene amplification and altered gene regulation. Gene induction typically involves cis regulatory elements that contact and activate genes on the same chromosome. Here we show that ecDNA hubs, clusters of ~10-100 ecDNAs within the nucleus, enable intermolecular enhancer-gene interactions to promote oncogene overexpression in trans. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA732415 Series Accession: GSE175451 ID: 200175451 368. Sex-specific differences in the function and differentiation of ABCs contribute to the female bias in lupus pathogenesis (Submitter supplied) We report the application of RNA-seq, ATAC-seq, and CUT and RUN technology for high-throughput profiling of H3K27me3 epigenetic marks in mice SWAP-70 and DEF6 double knockout (DKO) B-lymphocytes (ABCs and FoBs) flow sorted from spleen. We show that ABCs from female and male DKO mice have unique transcriptional profiles, chromatin accessibility, and that there is a selective loss of repressive chromatin marks like H3K27me3 in ABCs of DKO females can contribute to the increased expression of X-chromosome linked genes like Tlr7 and several other loci among which Tbx21, the classical ABC marker, showed strongest loss in F-ABCs as compared to F-FoBs. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL19057 76 Samples FTP download: GEO (BED, BW, TSV, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE175nnn/GSE175365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA732180 Series Accession: GSE175365 ID: 200175365 369. Young and Old Pre- and Post-Transplantation ATAC Seq (Submitter supplied) ATAC-sequencing of paired Y and O mouse HSCs pre and 3mo post lethal irradiation and HSC transplantation Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 16 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA636794 Series Accession: GSE151665 ID: 200151665 370. Mesenchymal stromal cells in the bone marrow niche consist of multi-populations with distinct transcriptional and epigenetic properties [scRNA-Seq] (Submitter supplied) Although multiple studies have investigated the mesenchymal stem and progenitor cells (MSCs) that give rise to mature bone marrow, high heterogeneity in their morphologies and properties causes difficulties in molecular separation of their distinct populations. In this study, by taking advantage of the resolution of the single cell transcriptome, we analyzed Sca-1 and PDGFR-α fraction in the mouse bone marrow tissue. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 1 Sample FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA719853 Series Accession: GSE171530 ID: 200171530 371. Mesenchymal stromal cells in the bone marrow niche consist of multi-populations with distinct transcriptional and epigenetic properties [ATAC-Seq] (Submitter supplied) Although multiple studies have investigated the mesenchymal stem and progenitor cells (MSCs) that give rise to mature bone marrow, high heterogeneity in their morphologies and properties causes difficulties in molecular separation of their distinct populations. In this study, by taking advantage of the resolution of the single cell transcriptome, we analyzed Sca-1 and PDGFR-α fraction in the mouse bone marrow tissue. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 8 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA719854 Series Accession: GSE171529 ID: 200171529 372. Mesenchymal stromal cells in the bone marrow niche consist of multi-populations with distinct transcriptional and epigenetic properties [RNA-Seq] (Submitter supplied) Although multiple studies have investigated the mesenchymal stem and progenitor cells (MSCs) that give rise to mature bone marrow, high heterogeneity in their morphologies and properties causes difficulties in molecular separation of their distinct populations. In this study, by taking advantage of the resolution of the single cell transcriptome, we analyzed Sca-1 and PDGFR-α fraction in the mouse bone marrow tissue. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA719852 Series Accession: GSE171528 ID: 200171528 373. Chromatin accessibility landscapes of CX3CR1+ effector , CX3CR1- Ly108- exhausted, or Ly108+ progenitor CD8 T cells during chronic viral infection. (Submitter supplied) During chronic viral infection, pathogen-specifc CD8+ T cells develop into three main phenotypically and functionally distinct subsets: TCF1hi progenitor, PD-1hi exhausted, and recently identied CX3CR1+ cytotoxic effector cells. Although genetic programs governing progenitor and exhausted subset formation have been well-studied, how CX3CR1+ effector CD8+ T cell differentiation is transcriptionally and epigentically regulated remains elusive. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149752/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630086 Series Accession: GSE149752 ID: 200149752 374. Role of Cop1 on chromatin accessibility in 4T1 mouse triple negative breast cancer cells (Submitter supplied) Cop1 regulates stability of transcription factors. We determined the role of Cop1 in the regulation of Cebpd transciptional output. We generated 4T1breast cancer cells with CRISPR/Cas9 mediated Cop1 (gene symbol RFWD2) knockout. We treated control sgRosa26 and sgCop1 cells with vehicle or IFNgamma (20ng/ml) for 24 hours and did ATAC-seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA731516 Series Accession: GSE174784 ID: 200174784 375. AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency (ChIP-Seq) (Submitter supplied) Somatic cell transcription factors are critical to maintaining cellular identity and constitute a barrier to human somatic cell reprogramming, yet a comprehensive understanding of the mechanism of action is lacking. To gain insight, we examined epigenome remodeling at the onset of human nuclear reprogramming by profiling human fibroblasts after fusion with murine embryonic stem cells. By ATAC-seq and ChIP-seq we identified enrichment for the AP-1 transcription factor c Jun at regions of early transient accessibility at fibroblast-specific enhancers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA727574 Series Accession: GSE173937 ID: 200173937 376. ATAC-seq of mESC treated with doxorubicin (Submitter supplied) E14 mESC were treated with doxorubicin Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA713392 Series Accession: GSE168687 ID: 200168687 377. ATACseq of FHSD iPSC control vs doxorubicin (Submitter supplied) FSHD iPSC and TP53 KO FSHD iPSC were treated with vehicle or doxorubicin and then harvested for ATACseq Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627711 Series Accession: GSE149234 ID: 200149234 378. Chromatin assembly factor 1B critically controls early development but not functional acquisition of iNKT cells [ATAC-seq] (Submitter supplied) T cell development is a complicatedly hierarchical process which is closely related with the chromatin activation and gene transcription. CD4+CD8+ double-positive (DP) thymocytes give rise to both conventional TCRαβ+ T cells and natural killer T cells, but they display different characteristics. Compared with conventional TCRαβ+ T cells, invariant natural killer T cells (iNKT cells) as the major population of NKT cells, are CD1d-restricted, recognize glycolipid antigens and rapidly exert effector functions after stimulation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 4 Samples FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627601 Series Accession: GSE149174 ID: 200149174 379. AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 61 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121053/ Series Accession: GSE121053 ID: 200121053 380. AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency (RNA-Seq) (Submitter supplied) Somatic cell transcription factors are critical to maintaining cellular identity and constitute a barrier to human somatic cell reprogramming, yet a comprehensive understanding of the mechanism of action is lacking. To gain insight, we examined epigenome remodeling at the onset of human nuclear reprogramming by profiling human fibroblasts after fusion with murine embryonic stem cells. By ATAC-seq and ChIP-seq we identified enrichment for the AP-1 transcription factor c Jun at regions of early transient accessibility at fibroblast-specific enhancers. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL18573 GPL19415 27 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA495468 Series Accession: GSE121052 ID: 200121052 381. AP-1 is a temporally regulated dual gatekeeper of reprogramming to pluripotency (ATAC-Seq) (Submitter supplied) Somatic cell transcription factors are critical to maintaining cellular identity and constitute a barrier to human somatic cell reprogramming, yet a comprehensive understanding of the mechanism of action is lacking. To gain insight, we examined epigenome remodeling at the onset of human nuclear reprogramming by profiling human fibroblasts after fusion with murine embryonic stem cells. By ATAC-seq and ChIP-seq we identified enrichment for the AP-1 transcription factor c Jun at regions of early transient accessibility at fibroblast-specific enhancers. more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL25526 GPL24676 30 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA495322 Series Accession: GSE120992 ID: 200120992 382. Epigenomic analysis of human neural cells (Submitter supplied) To understand regulatory function in human neural differentiation, we performed ATAC-seq in human induced pluripotent stem cells (iPSC), in vitro-differentiated neural progenitor cells (NPC) and ganglionic eminence-like (GE) cells, as well as commercially available neural stem cells, GABAergic neurons, and glutamatergic neurons. We also performed circular chromosome conformation capture (4C)-seq on these cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL15520 20 Samples FTP download: GEO (BEDGRAPH, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA731233 Series Accession: GSE174727 ID: 200174727 383. General Anesthetics Induce Epigenetic Alterations in Germ Cells that Result in Autism-like Behaviors (Submitter supplied) One in 54 children in the U.S. is diagnosed with Autism Spectrum Disorder (ASD). However, no one genetic mutation can fully explain the neuropathogenesis of ASD. Given the highly heritable nature of ASD, epigenetic alterations may be the missing link in understanding ASD. Human and animal studies have shown that exposure of the developing brain to anesthetic agents can trigger neurodegeneration and neurobehavioral abnormalities but the effect of general anesthetics on the germ line have not been explored in detail. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704822 Series Accession: GSE167500 ID: 200167500 384. EVI1 activates tumor-promoting transcriptional enhancers in pancreatic cancer. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 57 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166511/ Series Accession: GSE166511 ID: 200166511 385. EVI1 activates tumor-promoting transcriptional enhancers in pancreatic cancer [ATAC-seq]. (Submitter supplied) Cancer cells utilize epigenetic alterations to acquire autonomous capabilities for tumor maintenance. Here, we show that pancreatic ductal adenocarcinoma (PDA) cells hijack super-enhancers (SEs) to activate the EVI1 gene with its tumor-intrinsic program. We demonstrate that SE is the vital cis-acting element to maintain aberrant EVI1 transcription in PDA cells. Related to disease progression and inferior survival outcomes in human PDA, functional experiments further show that EVI1 upregulation is the cause of aggressive tumor phenotypes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA701168 Series Accession: GSE166510 ID: 200166510 386. The conserved sex regulator/pioneer factor DMRT1 recruits SOX9 in sexual cell fate reprogramming (Submitter supplied) Mammalian sexual development commences when fetal bipotential progenitor cells adopt male Sertoli (in XY) or female granulosa (in XX) gonadal cell fates. Differentiation of these cells involves extensive divergence in chromatin state and gene expression, reflecting distinct roles in sexual differentiation and gametogenesis. Surprisingly, differentiated gonadal cell fates require active maintenance through postnatal life to prevent sexual transdifferentiation and female cell fate can be reprogrammed by ectopic expression of the sex regulator DMRT1. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL13112 GPL21103 GPL17021 119 Samples FTP download: GEO (BIGWIG, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154484/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA646465 Series Accession: GSE154484 ID: 200154484 387. DUX/DUX4 activation is coupled to p53 signaling in embryos, 2C-like cells, and FSHD patient cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 76 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149267/ Series Accession: GSE149267 ID: 200149267 388. ATAC-seq_experiment in RKO cell line under low replication stress (Submitter supplied) RKO cells were treated with low doses of aphidicolin (0.2µM) that inhibit replicative DNA polymerases and induce a mild replication stress. ATAC-seq data were analysed on control cells (DMSO) and after 16h of treatment with aphidicolin Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658332 Series Accession: GSE156552 ID: 200156552 389. Complete loss of H3K9 methylation dissolves mouse heterochromatin organization (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 57 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142105/ Series Accession: GSE142105 ID: 200142105 390. Complete loss of H3K9 methylation dissolves mouse heterochromatin organization [ATAC-seq] (Submitter supplied) Establishment and charcterization of mouse embryonic fibroblasts deficient for 6 H3K9 lysine methyltranswferases (KMT) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA595916 Series Accession: GSE142104 ID: 200142104 391. Distal regulation mediated Core Transcriptional Regulatory Circuitry in Esophageal Squamous Cell Carcinoma [ATAC-seq] (Submitter supplied) In esophageal squamous cell carcinoma (ESCC), the core regulatory circuitry is ill-defined and the limited clinical approaches are available currently for the treatment of ESCC. Here, using enhancer profiling and CRC programme, we generated ESCC-dependent epigenomic-transcriptional regulatory circuitry, elaborated the exquisite work model mediated by core TFs and SEs through physical interaction between enhancers and promoter, and identified the crucial target of ESCC regulatory network. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543839 Series Accession: GSE131489 ID: 200131489 392. Open chromatin sites identified in wildtype and Brg1-cko neurons in basal and depolarized conditions [ATAC-seq] (Submitter supplied) ATAC-seq analyses examined open chromatin regions in of wildtype and Brg1-cko neurons in basal and depolarized conditions. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA730571 Series Accession: GSE174579 ID: 200174579 393. ATAC-seq data from murine peripheral T-cell lymphoma and control normal T cells, NKT cells and NK cells (Submitter supplied) Peripheral T-cell lymphomas (PTCLs) represent a significant unmet medical need with dismal clinical outcome.T-cell receptor (TCR) is emerging as a key driver of T lymphocytes transformation. However, the role of chronic TCR activation in lymphomagenesis and in survival of lymphoma cells is still poorly understood. Using an original mouse model, we report here that chronic TCR stimulation drives T-cell lymphomagenesis whereas TCR signaling does not contribute to PTCL survival. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL19057 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA730566 Series Accession: GSE174576 ID: 200174576 394. Segmental chromatin states (Submitter supplied) We profiled the chromatin accessibility, transcription factor binding, and gene expression in the homologous wing and haltere imaginal disc of Drosophila melanogaster, which are distinguished by the expression of the Hox protein Ultrabithorax (Ubx). Through the analysis of chromatin changes, we show Ubx has widespread effects on the chromatin landscape to specify cell identity. Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 36 Samples FTP download: GEO (BIGWIG, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA701668 Series Accession: GSE166714 ID: 200166714 395. Repression of endogenous retroviruses is required for mammary gland development and homeostasis [ATAC-Seq] (Submitter supplied) We demonstrate that loss of the histone H3K9 methyltransferase G9a in the developing mammary epithelium results in de novo chromatin opening which leads to severely impaired development of the mammary ductal tree, concomitant with impaired stem cell potential and disrupted intraductal polarity. Intriguingly, these phenotypes are not attributed to alterations in lineage specification and fidelity of the basal and luminal cell fates. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630717 Series Accession: GSE149977 ID: 200149977 396. SS18 is a phase-separation protein relocating from pluripotent to somatic loci during mESC differentiation [ATAC-Seq] (Submitter supplied) The transition from pluripotent to somatic states marks a critical checkpoint in mammalian development. How this is regulated remains largely unresolved. Here we report the identification of SS18 by whole genome CRISPR screen as a checkpoint regulator. SS18 regulates pluripotent to somatic transition or PST by relocating from pluripotent loci to somatic ones accompanied by corresponding chromatin closing-opening and remodeling of SS18-centric protein complexes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA558751 Series Accession: GSE135395 ID: 200135395 397. BANP opens chromatin and activates CpG island regulated genes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL17021 GPL16791 115 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155604/ Series Accession: GSE155604 ID: 200155604 398. BANP opens chromatin and activates CpG island regulated genes [ATAC-Seq] (Submitter supplied) In mammalian genomes, the vast majority of RNA polymerase II initiation events take place at CpG island promoters. Despite their relevance our understanding of their regulation remains limited. Here we identify Banp as the long sought-after TF that binds the orphan CGCG element in CpG islands by combining single-molecule footprinting with interaction proteomics. We show that Banp drives activity of CpG islands that control essential metabolic genes in the mouse and human genome. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 14 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA650492 Series Accession: GSE155601 ID: 200155601 399. ATRX promotes heterochromatin formation to protect cells from G-quadruplex DNA-mediated stress [ATAC-Seq] (Submitter supplied) We analyze the contribution of ATRX, DAXX and HIRA to the chromatin accessibility at G-quadruplex in mESC We analyze the contribution of ATRX and ESET to the chromatin accessibility at G-quadruplex in mESC Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 19 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA634517 Series Accession: GSE151053 ID: 200151053 400. Effect of ZIC3/TEAD2/TEAD4 on Reprogramming of Human Urine Cells (Submitter supplied) We performed RNA-seq and ATAC-seq on UCs from healthy humans and human embryonic stem cell line H1. By analyzing the transcriptome expression profile and chromatin accessibility bettween them, we find new transcription factors that can be used for reprogramming to study the mechanism of reprogramming. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 29 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA707206 Series Accession: GSE168392 ID: 200168392 401. High throughput joint profiling of chromatin accessibility and protein levels in single cells [Tcell_Intra] (Submitter supplied) Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present ATAC with Select Antigen Profiling by sequencing, ASAP-seq, a tool to simultaneously profile accessible chromatin and protein levels in thousands of single cells, pairing sparse scATAC data with robust detection of hundreds of cell surface and intracellular protein markers, and optionally, enriched mtDNA coverage for lineage tracing (mtscATAC-seq) with minimal impact on ATAC-seq data quality. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL24676 6 Samples FTP download: GEO (CSV, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA699565 Series Accession: GSE166191 ID: 200166191 402. High throughput joint profiling of chromatin accessibility and protein levels in single cells [PBMC_Stim_Multiome] (Submitter supplied) Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present ATAC with Select Antigen Profiling by sequencing, ASAP-seq, a tool to simultaneously profile accessible chromatin and protein levels in thousands of single cells, pairing sparse scATAC data with robust detection of hundreds of cell surface and intracellular protein markers, and optionally, enriched mtDNA coverage for lineage tracing (mtscATAC-seq) with minimal impact on ATAC-seq data quality. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL24676 12 Samples FTP download: GEO (CSV, MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA699556 Series Accession: GSE166188 ID: 200166188 403. Stable epigenetic programming of effector and central memory CD4 T cells occurs within 7 days of antigen exposure in vivo (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 34 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165348/ Series Accession: GSE165348 ID: 200165348 404. Stable epigenetic programming of effector and central memory CD4 T cells occurs within 7 days of antigen exposure in vivo (ATAC-seq) (Submitter supplied) T cell immunological memory is established within days of an infection but little is known about the in vivo changes in gene regulatory networks which account for the ability of memory T cells to respond more efficiently to secondary infections. To decipher the timing and nature of immunological memory we performed genome-wide analyses of epigenetic and transcriptional changes in a mouse model generating antigen-specific T cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA694141 Series Accession: GSE165346 ID: 200165346 405. The effect of STAG2 loss in Ewing sarcoma [ATAC-Seq] (Submitter supplied) Ewing sarcoma is an aggressive malignancy characterized by oncogenic rearrangements of the EWS gene with an ETS-family transcription factor, most commonly FLI. Recent comprehensive next-generation sequencing efforts have revealed few other highly recurrent mutations in this disease apart from loss-of-function mutations in STAG2 which occur in 15-20% of tumors. STAG2 is a member of the cohesin complex, which regulates sister chromatid alignment during mitosis and epigenetic regulation of gene expression. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21290 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA478843 Series Accession: GSE116494 ID: 200116494 406. The effect of STAG2 loss in Ewing sarcoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 5 related Platforms 38 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116495/ Series Accession: GSE116495 ID: 200116495 407. Single-nucleus chromatin accessibility and transcriptomic characterization of Alzheimer’s Disease (Submitter supplied) The gene-regulatory landscape of the brain is highly dynamic in health and disease, coordinating a menagerie of biological processes across¬ distinct cell-types. Here, we present a multi-omic single-nucleus study of 191,890 nuclei in late-stage Alzheimer’s Disease (AD), accessible through our intuitive web portal, profiling chromatin accessibility and gene expression in the same biological samples and uncovering vast cellular heterogeneity. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 230 Samples FTP download: GEO (CSV, H5, RDA) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA729525 Series Accession: GSE174367 ID: 200174367 408. Staphylococcus aureus modulate cellular metabolism to survive in epithelial cells (Submitter supplied) This work aimed to investigate the metabolic changes of epithelial cell metabolism during S. aureus infection. We revealed that persistent S. aureus survived in epithelial cells by modulating the cellular pathways of one carbon pool by folate. These results highlight the persistence mechanisms of S. aureus survived in epithelial cells by regulation of cellular metabolism, shedding light on the development of intervention strategies to combat S. more... Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25947 2 Samples FTP download: GEO (BED, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA728895 Series Accession: GSE174235 ID: 200174235 409. Integrated chromatin accessibility and transcriptome landscapes of doxorubicin-resistant breast cancer cells (Submitter supplied) Doxorubicin is considered to be the most effective chemotherapeutic drug used to treat breast cancer. Unfortunately, resistance to this drug is common, resulting in poor patient prognosis and survival. Dynamically reorganized chromatin allows rapid access of the gene regulatory machinery to open genomic regions facilitating subsequent gene expression through direct transcription factor (TF) activation and regulatory element binding. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 8 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA728600 Series Accession: GSE174152 ID: 200174152 410. IL-4 signals interfere with regulatory T cell polarization in vitro by controlling their genome-wide chromatin accessibility (Submitter supplied) IL-4 signals interfere with regulatory T cell polarization in vitro by controlling their genome-wide chromatin accessibility Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23479 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640530 Series Accession: GSE152810 ID: 200152810 411. Targeting P300/CBP reveals discrete regulation of transcription and chromatin accessibility by histone acetylation [ATACseq] (Submitter supplied) To test the long-standing paradigm directly linking histone acetylation with chromatin decompaction and transcriptional output, we used integrated epigenomic and transcriptomic analyses following acute inhibition of major cellular lysine acetyltransferases P300 and CBP. We discovered that P300/CBP inhibition dynamically perturbs acetylation kinetics and dramatically suppresses core-transcriptional networks in the absence of changes to chromatin accessibility. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 17 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA729049 Series Accession: GSE174272 ID: 200174272 412. Coordinate regulation of ELF5 and EHF at the chr11p13 modifier region (Submitter supplied) E74-like factor 5 (ELF5) and ETS-homologous factor (EHF) are epithelial selective ETS family transcription factors (TFs) encoded by genes at chr11p13, a region associated with cystic fibrosis (CF) lung disease severity. EHF controls many key processes in lung epithelial function so its regulatory mechanisms are important. Using CRISPR/Cas9 technology, we removed three cis-regulatory elements (CREs) from the chr11p13 region in airway epithelial cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542631 Series Accession: GSE131084 ID: 200131084 413. Foxp3 enhancers synergize to maximize regulatory T cell suppressive capacity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL24247 60 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158223/ Series Accession: GSE158223 ID: 200158223 414. Foxp3 enhancers synergize to maximize regulatory T cell suppressive capacity [ATAC-Seq] (Submitter supplied) Treg cells bearing a diverse antigen receptor repertoire suppress pathogenic T cells and maintain immune homeostasis during their long lifespan. How their robust function is determined genetically remains elusive. Here, we investigate the regulatory space of the cis-regulatory elements of Treg lineage–specifying factor Foxp3. Foxp3 enhancers are known as distinct readers for environmental cues in promoting Treg cell induction or lineage stability. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA664020 Series Accession: GSE158105 ID: 200158105 415. Chromatin accessibility governs the differential response of cancer and T-cells to arginine starvation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by array Platforms: GPL18573 GPL10558 78 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137034/ Series Accession: GSE137034 ID: 200137034 416. Chromatin accessibility governs the differential response of cancer and T-cells to arginine starvation (ATAC-seq) (Submitter supplied) Depleting the microenvironment of important nutrients such as arginine is a key strategy for immune evasion by cancer cells. Many tumors overexpress arginase but it is unclear how these cancers, but not T-cells, tolerate arginine depletion. Here, we show that tumor cells synthesize arginine from citrulline by upregulating argininosuccinate synthetase 1 (ASS1). Under arginine starvation, ASS1 transcription is induced by ATF4 and CEBPbeta binding to a previously uncharacterized enhancer within ASS1. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 33 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564306 Series Accession: GSE137032 ID: 200137032 417. Reactivation of Zeta-Globin by deletion of BCL11A and LRF in murine cells (Submitter supplied) The alpha and beta-globin loci harbour genes that are expressed during development and silenced throughout post-natal life. Learning to reactivate these genes may offer new therapeutic approaches for the hemoglobinopathies, the most common single gene disorders. Here, we address the mechanisms underlying the regulation of the gene encoding zeta-globin, the embryonically expressed alpha-like globin. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE174nnn/GSE174110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA728355 Series Accession: GSE174110 ID: 200174110 418. Transcriptional reprogramming by oxidative stress occurs within a predefined chromatin accessibility landscape (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 40 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173664/ Series Accession: GSE173664 ID: 200173664 419. Transcriptional reprogramming by oxidative stress occurs within a predefined chromatin accessibility landscape [ATAC-seq] (Submitter supplied) Reactive oxygen species (ROS) are important signalling molecules in many physiological processes, yet excess ROS leads to cell damage and can lead to pathology. Accordingly, cells need to maintain tight regulation of ROS levels, and ROS-responsive transcriptional reprogramming is central to this process. Although it has long been recognized that oxidative stress leads to rapid, significant changes in gene expression, the impact of oxidative stress on the underlying chromatin accessibility landscape remained unclear. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (BIGWIG, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA726557 Series Accession: GSE173663 ID: 200173663 420. Characterization of the transcriptomic profile of Plagl1+/-pat retina (Submitter supplied) Retinal damage triggers reactive gliosis in Müller glia across vertebrate species, but only in regenerative animals, such as teleost fish, do Müller glia initiate repair; proliferating and undergoing neurogenesis to replace lost cells. We found that Plagl1, a maternally imprinted gene, is dynamically regulated in reactive Müller glia post-insult, with transcript levels transiently increasing before stably declining. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA727582 Series Accession: GSE173942 ID: 200173942 421. Molecular Logic of Cellular Diversification in the Mouse Cerebral Cortex (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL13112 GPL24247 23 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153164/ Series Accession: GSE153164 ID: 200153164 422. Molecular Logic of Cellular Diversification in the Mouse Cerebral Cortex (scATACseq) (Submitter supplied) The mammalian cerebral cortex has an unparalleled diversity of cell types, which are generated during development through a series of temporally orchestrated events that are under tight evolutionary constraint and are critical for proper cortical assembly and function. However, the molecular logic that governs the establishment and organization of cortical cell types remains elusive, largely due to the large number of cell classes undergoing dynamic cell-state transitions over extended developmental timelines. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 3 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641654 Series Accession: GSE153163 ID: 200153163 423. Molecular Logic of Cellular Diversification in the Mouse Cerebral Cortex (scRNAseq) (Submitter supplied) The mammalian cerebral cortex has an unparalleled diversity of cell types, which are generated during development through a series of temporally orchestrated events that are under tight evolutionary constraint and are critical for proper cortical assembly and function. However, the molecular logic that governs the establishment and organization of cortical cell types remains elusive, largely due to the large number of cell classes undergoing dynamic cell-state transitions over extended developmental timelines. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL13112 GPL24247 20 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641653 Series Accession: GSE153162 ID: 200153162 424. Analysis of gene network branching during optic cup morphogenesis in zebrafish (Submitter supplied) We captured chromatin accessibility branching using ATAC-seq in isolated NR and RPE populations in zebrafish. We identify differentially active cis-regulatory modules and classify them as activating or repressing elements. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631422 Series Accession: GSE150189 ID: 200150189 425. Niche stiffening compromises stem cell potential during aging by reducing chromatin accessibility at bivalent promoters (Submitter supplied) RNA and ATAC sequencing data of CD34+ Ia6+ sorted hair follicle stem cells from 6 and 24 months old mice Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL24247 GPL21493 28 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625206 Series Accession: GSE148619 ID: 200148619 426. Regulation of alpha-like globin gene expression in murine primitive erythropoiesis (ATAC-seq) (Submitter supplied) Haemoglobin, the oxygen-carrying molecule of red blood cells, at all stages of development comprises a tetramer of two α-like and two β-like globin chains. In humans and mice the highly conserved α- and β-globin loci contain genes encoding globin chains specifically expressed only during the first trimester of gestation (termed embryonic globins) in addition to the genes encoding globin chains expressed throughout adult life. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 7 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427277 Series Accession: GSE108430 ID: 200108430 427. Characterization of the chromatin accessibility profile of Plagl1+/-pat retina (Submitter supplied) Retinal damage triggers reactive gliosis in Müller glia across vertebrate species, but only in regenerative animals, such as teleost fish, do Müller glia initiate repair; proliferating and undergoing neurogenesis to replace lost cells. We found that Plagl1, a maternally imprinted gene, is dynamically regulated in reactive Müller glia post-insult, with transcript levels transiently increasing before stably declining. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA727312 Series Accession: GSE173853 ID: 200173853 428. The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution (Submitter supplied) Root cells from Arabidopsis seedlings profiled with single-cell ATAC-seq. Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19580 1 Sample FTP download: GEO (RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA727303 Series Accession: GSE173834 ID: 200173834 429. Epigenetic Plasticity Enables CNS-Trafficking of EBV-infected B Lymphocytes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172477/ Series Accession: GSE172477 ID: 200172477 430. Epigenetic Plasticity Enables CNS-Trafficking of EBV-infected B Lymphocytes [ATAC-Seq] (Submitter supplied) Subpopulations of B-lymphocytes traffic to different sites and organs to provide diverse and tissue-specific functions. Here, we provide evidence that epigenetic differences confer a neuroinvasive phenotype. An EBV+ B cell lymphoma cell line (M14) with low frequency trafficking to the CNS was neuroadapted to generate a highly neuroinvasive B-cell population (MUN14). MUN14 B cells efficiently infiltrated the CNS within one week and produced neurological pathologies. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA723496 Series Accession: GSE172476 ID: 200172476 431. Epigenetic Plasticity Enables CNS-Trafficking of EBV-infected B Lymphocytes [RNA-Seq] (Submitter supplied) Subpopulations of B-lymphocytes traffic to different sites and organs to provide diverse and tissue-specific functions. Here, we provide evidence that epigenetic differences confer a neuroinvasive phenotype. An EBV+ B cell lymphoma cell line (M14) with low frequency trafficking to the CNS was neuroadapted to generate a highly neuroinvasive B-cell population (MUN14). MUN14 B cells efficiently infiltrated the CNS within one week and produced neurological pathologies. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 14 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA723494 Series Accession: GSE172475 ID: 200172475 432. BAP1 constrains pervasive H2AK119ub1 to control the transcriptional potential of the genome. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Drosophila melanogaster; Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19415 GPL25537 162 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161996/ Series Accession: GSE161996 ID: 200161996 433. BAP1 constrains pervasive H2AK119ub1 to control the transcriptional potential of the genome [ATAC-seq] (Submitter supplied) Histone-modifying systems play fundamental roles in gene regulation and the development of multicellular organisms. Histone modifications that are enriched at gene regulatory elements have been heavily studied, but the function of modifications found more broadly throughout the genome remains poorly understood. This is exemplified by histone H2A monoubiquitylation (H2AK119ub1), which is enriched at Polycomb-repressed gene promoters but also covers the genome at lower levels. more... Organism: Mus musculus; Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25537 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA680292 Series Accession: GSE161994 ID: 200161994 434. ATAC-seq, ChIP-seq and RNA-seq studies in myoblasts lacking Hira (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL21103 GPL19057 20 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161056/ Series Accession: GSE161056 ID: 200161056 435. Genome-wide changes in chromatin accessibility in myoblasts lacking Hira [ATAC-seq] (Submitter supplied) The epigenetic mechanisms coordinating the maintenance of adult cellular lineages and the inhibition of alternative cell fates are poorly understood. Here we show that targeted ablation of the histone chaperone HIRA in myogenic cells leads to extensive transcriptional modifications consistent with a major role in maintaining skeletal muscle cellular identity. Conditional ablation of HIRA in muscle stem cells of adult mice compromised their capacity to regenerate and self-renew, leading to tissue repair failure. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675384 Series Accession: GSE161053 ID: 200161053 436. Linking the FTO obesity rs1421085 variant circuitry to cellular, metabolic and organismal phenotypes in vivo (Submitter supplied) Atac-seq in iWAT pre-adipocytes at day 1 of adipogenic induction Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 1 Sample FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714932 Series Accession: GSE169032 ID: 200169032 437. Dynamic chromatin regulatory landscape of human CAR T cell exhaustion [ATAC-seq] (Submitter supplied) Dysfunction in T cells limits the efficacy of cancer immunotherapy. We profiled the epigenome, transcriptome, and enhancer connectome of exhaustion-prone GD2-targeting HA-28z chimeric antigen receptor (CAR) T cells and control CD19-targeting CAR T cells, which present less exhaustion-inducing tonic signaling, at multiple points during their ex vivo expansion. We found widespread, dynamic changes in chromatin accessibility and 3D chromosome conformation preceding changes in gene expression, notably at loci proximal to exhaustion-associated genes such as PDCD1, CTLA4, and HAVCR2, and increased DNA motif access for AP-1 family transcription factors, which are known to promote exhaustion. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 40 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714409 Series Accession: GSE168880 ID: 200168880 438. Multiple interactions of the oncoprotein transcription factor MYC with the SWI/SNF chromatin remodeler (Submitter supplied) We report that even though SNF5 is the most well-documented SWI/SNF subunit to bind MYC, MYC can use multiple interaction surfaces to interact with SWI/SNF subunits independently of SNF5. In line with this, MYC interacts with the pan-SWI/SNF subunit, BAF155, in multiple SNF5-null malignant rhabdoid tumor (MRT) cell lines and almost all of MYC co-localizes with SWI/SNF subunits on chromatin in MRT. In the MRT cell line, G401, MYC binds to essential genes, although for a purpose that appears distinct from chromatin remodeling, and loss of MYC leads to widespread gene expression changes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL24676 30 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692456 Series Accession: GSE164926 ID: 200164926 439. Genetic effects on liver chromatin accessibility identify disease regulatory variants [ATAC-seq] (Submitter supplied) Identifying the molecular mechanisms by which genome-wide association study (GWAS) loci influence traits remains challenging. Chromatin accessibility quantitative trait loci (caQTL) help identify GWAS loci that may alter GWAS traits by modulating chromatin structure, but caQTL have been identified in a limited set of human tissues. Here we mapped caQTL in human liver tissue in 20 liver samples and identified 3,123 caQTL. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL24676 20 Samples FTP download: GEO (BED, BW, NARROWPEAK, RDATA) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692238 Series Accession: GSE164870 ID: 200164870 440. Genome-wide ChIP-Seq maps of REST distribution in Wild Type (WT) and Actb-/- (KO) Mouse Embryonic Fibroblast (Submitter supplied) β-actin is a crucial component of several chromatin remodeling complexes which control chromatin structure and accessibility. The mammalian Brahma-associated factor (BAF) is one such complex that plays essential roles in development and differentiation by regulating the chromatin state of critical genes and opposing the repressive activity of polycomb repressive complexes. While previous work has shown that β-actin loss can lead to extensive changes in gene expression and heterochromatin organization, it is not known if changes in β-actin levels can directly influence chromatin remodeling activities of BAF and polycomb proteins. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA680165 Series Accession: GSE161965 ID: 200161965 441. Hi-C sequencing analysis of wild-type, β-actin knockout and β-actin hetereozygous mouse embryonic fibroblasts (Submitter supplied) β-actin is a crucial component of several chromatin remodeling complexes which control chromatin structure and accessibility. The mammalian Brahma-associated factor (BAF) is one such complex that plays essential roles in development and differentiation by regulating the chromatin state of critical genes and opposing the repressive activity of polycomb repressive complexes. While previous work has shown that β-actin loss can lead to extensive changes in gene expression and heterochromatin organization, it is not known if changes in β-actin levels can directly influence chromatin remodeling activities of BAF and polycomb proteins. more... Organism: Mus musculus Type: Other Platform: GPL24247 12 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630735 Series Accession: GSE149986 ID: 200149986 442. Genome-wide ChIP-Seq maps of EZH2 distribution between Wild Type (WT), Actb+/- (HET), and Actb-/- (KO) Mouse Embryonic Fibroblast (Submitter supplied) β-actin is a crucial component of several chromatin remodeling complexes which control chromatin structure and accessibility. The mammalian Brahma-associated factor (BAF) is one such complex that plays essential roles in development and differentiation by regulating the chromatin state of critical genes and opposing the repressive activity of polycomb repressive complexes. While previous work has shown that β-actin loss can lead to extensive changes in gene expression and heterochromatin organization, it is not known if changes in β-actin levels can directly influence chromatin remodeling activities of BAF and polycomb proteins. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630705 Series Accession: GSE149961 ID: 200149961 443. LKB1 inactivation initiates a chromatin remodeling cascade to drive metastatic progression (Submitter supplied) Metastasis is the leading cause of cancer-related deaths, enabling cancer cells to expand to secondary tumor sites and compromise systemic organ function1. Given that primary tumors and metastases often share the same constellation of functional driver mutations2–4, the mechanisms driving their distinct phenotypes are unclear. Here, we show that inactivation of a frequently mutated tumor suppressor gene, liver kinase B1 (LKB1), has evolving effects throughout lung cancer progression, differentially re-programming the epigenetic landscape of early-stage primary tumors compared to late-stage metastases. more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL21697 GPL21626 441 Samples FTP download: GEO (BW, CSV, RDS, TSV, TXT, XLSX, ZIP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704434 Series Accession: GSE167381 ID: 200167381 444. Tumors exploit FTO-mediated regulation of glycolytic metabolism to evade immune surveillance (Submitter supplied) Ever-increasing understanding about the complexity of factors and regulatory layers that contribute to immune evasion facilitates the development of immunotherapies. However, the diversity of malignant tumors limits many known mechanisms in specific genetic and epigenetic contexts, manifesting the need to discover general driver genes. Here, we have identified the m6A demethylase FTO as an essential epitranscriptomic regulator utilized by tumors to escape immune surveillance through regulation of glycolytic metabolism. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL21273 24 Samples FTP download: GEO (BW, CSV, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648045 Series Accession: GSE154952 ID: 200154952 445. Deconvoluting global cytokine signaling networks in natural killer cells [ATAC-Seq] (Submitter supplied) Cytokine signaling via signal transducer and activator of transcription (STAT) proteins is crucial for optimal antiviral responses of natural killer (NK) cells. However, the pleiotropic effects of both cytokine and STAT signaling preclude the ability to precisely attribute molecular changes to either source. In this study, we employ a multi-“omics” approach to deconstruct and rebuild the complex interaction of three major STAT signaling pathways in NK cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 22 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA588063 Series Accession: GSE140033 ID: 200140033 446. Reactivation of Zeta-Globin by deletion of BCL11A and LRF in HUDEP cells (ATAC-seq) (Submitter supplied) The alpha and beta-globin loci harbour genes that are expressed during development and silenced throughout post-natal life. Learning to reactivate these genes may offer new therapeutic approaches for the hemoglobinopathies, the most common single gene disorders. Here, we address the mechanisms underlying the regulation of the gene encoding zeta-globin, the embryonically expressed alpha-like globin. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 19 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA725485 Series Accession: GSE173416 ID: 200173416 447. Integration of M. tuberculosis phenotype with single cell RNA-seq to interrogate host macrophage heterogeneity in vivo. (Submitter supplied) Over the last several years, scRNA-seq has proven an invaluable tool for dissecting the role of the immune environment in many diseases. However, for infectious disease studies, the absence of information regarding the transcriptional status of the infecting agent reduces our functional appreciation of the roles of different immune effector cells in determining control versus progression of disease. more... Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 24 Samples FTP download: GEO (CSV, RDS, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA703963 Series Accession: GSE167232 ID: 200167232 448. Analysis of genome occupancy of Chd8 and H3K4me3 peaks in embryonic stem cells and differentiaing ESCs and associated ATAC-seq profiles in the presence and absence of Chd8 (Submitter supplied) In this work, we show a role for Chd8 in the regulation of Xist RNA, the master regulator of X chromosome inactivation (XCI) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 33 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA702131 Series Accession: GSE166859 ID: 200166859 449. Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks [ATAC-Seq] (Submitter supplied) Complex gene regulatory networks ensure that important genes are expressed at precise levels. When gene expression within these networks is sufficiently perturbed it can lead to disease. To understand how gene expression disruptions percolate through a network, we must first map the connections between regulatory genes and their downstream targets. However, it has been challenging to identify the upstream regulators for genes of interest. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 93 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA720689 Series Accession: GSE171736 ID: 200171736 450. Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks [Amplicon] (Submitter supplied) Complex gene regulatory networks ensure that important genes are expressed at precise levels. When gene expression within these networks is sufficiently perturbed it can lead to disease. To understand how gene expression disruptions percolate through a network, we must first map the connections between regulatory genes and their downstream targets. However, it has been challenging to identify the upstream regulators for genes of interest. more... Organism: Homo sapiens Type: Other Platforms: GPL22790 GPL21697 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA720559 Series Accession: GSE171678 ID: 200171678 451. Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks [RNA-Seq] (Submitter supplied) Complex gene regulatory networks ensure that important genes are expressed at precise levels. When gene expression within these networks is sufficiently perturbed it can lead to disease. To understand how gene expression disruptions percolate through a network, we must first map the connections between regulatory genes and their downstream targets. However, it has been challenging to identify the upstream regulators for genes of interest. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 96 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA720558 Series Accession: GSE171677 ID: 200171677 452. Systematic discovery and perturbation of regulatory genes in human T cells reveals the architecture of immune networks [CRISPR] (Submitter supplied) Complex gene regulatory networks ensure that important genes are expressed at precise levels. When gene expression within these networks is sufficiently perturbed it can lead to disease. To understand how gene expression disruptions percolate through a network, we must first map the connections between regulatory genes and their downstream targets. However, it has been challenging to identify the upstream regulators for genes of interest. more... Organism: Homo sapiens Type: Other Platform: GPL20301 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA720549 Series Accession: GSE171674 ID: 200171674 453. CD4+ T cells in presence or absence of Ikaros (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 40 Samples FTP download: GEO (BIGWIG, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157813/ Series Accession: GSE157813 ID: 200157813 454. Genome wide chromatin accessibility (ATAC-SEQ) in the presence or absence of Ikaros in CD4+ T cells. (Submitter supplied) We found that Ikaros is critical to limit the expression of pro-inflammatory cytokines in TCR/CD28-activated CD4+ T cells. To understand if Ikaros could modify the chromatin accessibility in regions controling the expression of these pro-inflammatory genes, we examined the chromatin state in naive CD4+ T cells and CD4+ T cells activated with anti-CD3+anti-CD28 antibodies for 1 and 2 days, from WT (Ikaros f/f CD4-Cre-) and Ikaros TKO mice (Ikaros f/f CD4-Cre+), using the ATAC-seq approach. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 18 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA662893 Series Accession: GSE157812 ID: 200157812 455. DNA G-quadruplexes modulate highly transcribed genes in human chromatin [ATAC-seq] (Submitter supplied) G4s are nucleic acids secondary structures that form in the presence of four or more runs of gunanine. In vitro results suggested that G4s are involved in the regulation of both transcription and replication processes. In vitro results suggested that G4s are involved in the regulation of both transcription 6–10 and replication 11–13 processes allowed to demonstrate the actual folding of G4s in live cells, but also inserted them in a more biologically relevant context. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18460 1 Sample FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607520 Series Accession: GSE145532 ID: 200145532 456. Invariant Natural Killer T Cell Subsets Have Diverse Graft-Versus-Host-Disease-Preventing and Anti-Tumor Effects (Submitter supplied) Invariant Natural Killer T (iNKT) cells are a T cell subset with potent immunomodulatory properties. Experimental evidence in mice and observational studies in humans indicate that iNKT cells have antitumor potential as well as the ability to suppress acute and chronic Graft-versus-Host-Disease (GvHD). Murine iNKT cells differentiate during thymic development into iNKT1, iNKT2 and iNKT17 sublineages, which differ transcriptomically and epigenomically, and have subset-specific developmental requirements. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 48 Samples FTP download: GEO (CSV, FNA, GFF, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA722286 Series Accession: GSE172169 ID: 200172169 457. ATAC-seq from prostate gland (ENCSR999NKW) (Submitter supplied) ATAC-seq on human prostate gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173068/ Series Accession: GSE173068 ID: 200173068 458. ATAC-seq from HG03045 (ENCSR249FXU) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173067/ Series Accession: GSE173067 ID: 200173067 459. ATAC-seq from inflammation-experienced regulatory T-cells (ENCSR993QKC) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173064/ Series Accession: GSE173064 ID: 200173064 460. ATAC-seq from foreskin keratinocyte (ENCSR247PVM) (Submitter supplied) ATAC-seq on primary keratinocytes in day 1.5 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 7 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173063/ Series Accession: GSE173063 ID: 200173063 461. ATAC-seq from liver (ENCSR465PYP) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173061/ Series Accession: GSE173061 ID: 200173061 462. ATAC-seq from neural tube (ENCSR983JWA) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse neural tube For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173059/ Series Accession: GSE173059 ID: 200173059 463. ATAC-seq from K562 (ENCSR465IDZ) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173058/ Series Accession: GSE173058 ID: 200173058 464. ATAC-seq from foreskin keratinocyte (ENCSR245LNF) (Submitter supplied) ATAC-seq on primary keratinocytes in day 3.0 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173056/ Series Accession: GSE173056 ID: 200173056 465. ATAC-seq from foreskin keratinocyte (ENCSR460DKJ) (Submitter supplied) ATAC-seq on primary keratinocytes in day 3.5 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 11 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173055/ Series Accession: GSE173055 ID: 200173055 466. ATAC-seq from kidney (ENCSR732OTZ) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse kidney For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173052/ Series Accession: GSE173052 ID: 200173052 467. ATAC-seq from K562 (ENCSR978HFU) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173050/ Series Accession: GSE173050 ID: 200173050 468. ATAC-seq from limb (ENCSR460BUL) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse limb For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173049/ Series Accession: GSE173049 ID: 200173049 469. ATAC-seq from K562 (ENCSR243BXK) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173048/ Series Accession: GSE173048 ID: 200173048 470. ATAC-seq from forebrain (ENCSR976LWP) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse forebrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173047/ Series Accession: GSE173047 ID: 200173047 471. ATAC-seq from GM18502 (ENCSR241VGH) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173046/ Series Accession: GSE173046 ID: 200173046 472. ATAC-seq from GM21723 (ENCSR233HSC) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173044/ Series Accession: GSE173044 ID: 200173044 473. ATAC-seq from GM19452 (ENCSR454UTH) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173043/ Series Accession: GSE173043 ID: 200173043 474. ATAC-seq from GM19351 (ENCSR231BZU) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173041/ Series Accession: GSE173041 ID: 200173041 475. ATAC-seq from hematopoietic stem cell (ENCSR453AWR) (Submitter supplied) PSU mouse HSC 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173040/ Series Accession: GSE173040 ID: 200173040 476. ATAC-seq from left cardiac atrium (ENCSR731ODJ) (Submitter supplied) ATAC-seq on human left cardiac atrium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173039/ Series Accession: GSE173039 ID: 200173039 477. ATAC-seq from megakaryocyte progenitor cell (ENCSR229QKB) (Submitter supplied) PSU mouse CFU-M 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173037/ Series Accession: GSE173037 ID: 200173037 478. ATAC-seq from regulatory T cell (ENCSR724UJS) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173036/ Series Accession: GSE173036 ID: 200173036 479. ATAC-seq from K562 (ENCSR974QYY) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173035/ Series Accession: GSE173035 ID: 200173035 480. ATAC-seq from right cardiac atrium (ENCSR452OSK) (Submitter supplied) ATAC-seq on human right cardiac atrium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173031/ Series Accession: GSE173031 ID: 200173031 481. ATAC-seq from K562 (ENCSR966ZCL) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173029/ Series Accession: GSE173029 ID: 200173029 482. ATAC-seq from heart (ENCSR451NAE) (Submitter supplied) ATAC-seq on postnatal p0 mouse heart For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173028/ Series Accession: GSE173028 ID: 200173028 483. ATAC-seq from GM19463 (ENCSR712ZRY) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173027/ Series Accession: GSE173027 ID: 200173027 484. ATAC-seq from intestine (ENCSR966ORC) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse intestine For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173025/ Series Accession: GSE173025 ID: 200173025 485. ATAC-seq from GM19455 (ENCSR706GDQ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173023/ Series Accession: GSE173023 ID: 200173023 486. ATAC-seq from K562 (ENCSR446UJL) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173020/ Series Accession: GSE173020 ID: 200173020 487. ATAC-seq from neural tube (ENCSR700QBR) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse neural tube For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173018/ Series Accession: GSE173018 ID: 200173018 488. ATAC-seq from K562 (ENCSR217QAB) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173017/ Series Accession: GSE173017 ID: 200173017 489. ATAC-seq from neural tube (ENCSR217NOA) (Submitter supplied) ATAC-seq on embryonic e13.5 mouse neural tube For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173015/ Series Accession: GSE173015 ID: 200173015 490. ATAC-seq from GM18517 (ENCSR442OAV) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173014/ Series Accession: GSE173014 ID: 200173014 491. ATAC-seq from K562 (ENCSR442DWQ) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173013/ Series Accession: GSE173013 ID: 200173013 492. ATAC-seq from GM18499 (ENCSR700HPA) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173011/ Series Accession: GSE173011 ID: 200173011 493. ATAC-seq from K562 (ENCSR214SFA) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173009/ Series Accession: GSE173009 ID: 200173009 494. ATAC-seq from K562 (ENCSR214QZO) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173006/ Series Accession: GSE173006 ID: 200173006 495. ATAC-seq from K562 (ENCSR962TDN) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173005/ Series Accession: GSE173005 ID: 200173005 496. ATAC-seq from HG03108 (ENCSR962ITF) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173003/ Series Accession: GSE173003 ID: 200173003 497. ATAC-seq from GM21619 (ENCSR214EIV) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173002/ Series Accession: GSE173002 ID: 200173002 498. ATAC-seq from heart right ventricle (ENCSR212LYK) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE173nnn/GSE173000/ Series Accession: GSE173000 ID: 200173000 499. ATAC-seq from neural tube (ENCSR690VOH) (Submitter supplied) ATAC-seq on embryonic e12.5 mouse neural tube For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172998/ Series Accession: GSE172998 ID: 200172998 500. ATAC-seq from intestine (ENCSR961SMM) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse intestine For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172997/ Series Accession: GSE172997 ID: 200172997 501. ATAC-seq from midbrain (ENCSR211OCS) (Submitter supplied) ATAC-seq on postnatal p0 mouse midbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172993/ Series Accession: GSE172993 ID: 200172993 502. ATAC-seq from G1E-ER4 (ENCSR428BSK) (Submitter supplied) PSU mouse G1E-ER4+E2 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172992/ Series Accession: GSE172992 ID: 200172992 503. ATAC-seq from gastrocnemius medialis (ENCSR689SDA) (Submitter supplied) ATAC-seq on human gastrocnemius medialis For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172991/ Series Accession: GSE172991 ID: 200172991 504. ATAC-seq from GM19324 (ENCSR425WQW) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172990/ Series Accession: GSE172990 ID: 200172990 505. ATAC-seq from testis (ENCSR210NKB) (Submitter supplied) ATAC-seq on human testis For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172988/ Series Accession: GSE172988 ID: 200172988 506. ATAC-seq from GM21515 (ENCSR960KGO) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172986/ Series Accession: GSE172986 ID: 200172986 507. ATAC-seq from GM21447 (ENCSR424KQH) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172982/ Series Accession: GSE172982 ID: 200172982 508. ATAC-seq from breast epithelium (ENCSR955JSO) (Submitter supplied) ATAC-seq on human mammary gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172981/ Series Accession: GSE172981 ID: 200172981 509. ATAC-seq from GM21717 (ENCSR422RPD) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172979/ Series Accession: GSE172979 ID: 200172979 510. ATAC-seq from K562 (ENCSR685YMG) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172978/ Series Accession: GSE172978 ID: 200172978 511. ATAC-seq from HG02981 (ENCSR208HAP) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172977/ Series Accession: GSE172977 ID: 200172977 512. ATAC-seq from HG02870 (ENCSR420RVW) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172976/ Series Accession: GSE172976 ID: 200172976 513. ATAC-seq from GM18870 (ENCSR684KUG) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172975/ Series Accession: GSE172975 ID: 200172975 514. ATAC-seq from K562 (ENCSR420NIU) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172973/ Series Accession: GSE172973 ID: 200172973 515. ATAC-seq from K562 (ENCSR680XOP) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172971/ Series Accession: GSE172971 ID: 200172971 516. ATAC-seq from GM19025 (ENCSR419UYY) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172970/ Series Accession: GSE172970 ID: 200172970 517. ATAC-seq from limb (ENCSR204ZTY) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse limb For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172969/ Series Accession: GSE172969 ID: 200172969 518. ATAC-seq from GM21529 (ENCSR954BDA) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172966/ Series Accession: GSE172966 ID: 200172966 519. ATAC-seq from foreskin keratinocyte (ENCSR677MJF) (Submitter supplied) ATAC-seq on primary keratinocytes in day 0.5 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172964/ Series Accession: GSE172964 ID: 200172964 520. ATAC-seq from adrenal gland (ENCSR414DVK) (Submitter supplied) ATAC-seq on human adrenal gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172963/ Series Accession: GSE172963 ID: 200172963 521. ATAC-seq from GM19043 (ENCSR409YCK) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172962/ Series Accession: GSE172962 ID: 200172962 522. ATAC-seq from K562 (ENCSR199HSR) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172960/ Series Accession: GSE172960 ID: 200172960 523. ATAC-seq from GM21526 (ENCSR408IVU) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172959/ Series Accession: GSE172959 ID: 200172959 524. ATAC-seq from K562 (ENCSR197GOQ) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172957/ Series Accession: GSE172957 ID: 200172957 525. ATAC-seq from HG02588 (ENCSR189VFC) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172954/ Series Accession: GSE172954 ID: 200172954 526. ATAC-seq from HG02763 (ENCSR404OEO) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172952/ Series Accession: GSE172952 ID: 200172952 527. ATAC-seq from excitatory neuron (ENCSR187VKR) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172950/ Series Accession: GSE172950 ID: 200172950 528. ATAC-seq from HG03159 (ENCSR940YDN) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172949/ Series Accession: GSE172949 ID: 200172949 529. ATAC-seq from K562 (ENCSR676UFY) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172946/ Series Accession: GSE172946 ID: 200172946 530. ATAC-seq from HG02571 (ENCSR400ISH) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172945/ Series Accession: GSE172945 ID: 200172945 531. ATAC-seq from foreskin keratinocyte (ENCSR939WVU) (Submitter supplied) ATAC-seq on primary keratinocytes in day 5.0 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172944/ Series Accession: GSE172944 ID: 200172944 532. ATAC-seq from SK-N-SH (ENCSR182EZJ) (Submitter supplied) ATAC-seq on human cell line SK-N-SH (RA treated) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172943/ Series Accession: GSE172943 ID: 200172943 533. ATAC-seq from HG03025 (ENCSR673ZMQ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172939/ Series Accession: GSE172939 ID: 200172939 534. ATAC-seq from K562 (ENCSR390UVH) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172937/ Series Accession: GSE172937 ID: 200172937 535. ATAC-seq from transverse colon (ENCSR668VCT) (Submitter supplied) ATAC-seq on human transverse colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172936/ Series Accession: GSE172936 ID: 200172936 536. ATAC-seq from kidney (ENCSR389CLN) (Submitter supplied) ATAC-seq on postnatal p0 mouse kidney For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172935/ Series Accession: GSE172935 ID: 200172935 537. ATAC-seq from GM21528 (ENCSR939EVW) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172934/ Series Accession: GSE172934 ID: 200172934 538. ATAC-seq from lung (ENCSR668EIA) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172933/ Series Accession: GSE172933 ID: 200172933 539. ATAC-seq from K562 (ENCSR935JVI) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172932/ Series Accession: GSE172932 ID: 200172932 540. ATAC-seq from transverse colon (ENCSR386HAZ) (Submitter supplied) ATAC-seq on human transverse colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172929/ Series Accession: GSE172929 ID: 200172929 541. ATAC-seq from K562 (ENCSR934FTO) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172927/ Series Accession: GSE172927 ID: 200172927 542. ATAC-seq from K562 (ENCSR180IJO) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172926/ Series Accession: GSE172926 ID: 200172926 543. ATAC-seq from HG02678 (ENCSR180HEL) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172925/ Series Accession: GSE172925 ID: 200172925 544. ATAC-seq from K562 (ENCSR179IAC) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172918/ Series Accession: GSE172918 ID: 200172918 545. ATAC-seq from hindbrain (ENCSR662KNY) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse hindbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172917/ Series Accession: GSE172917 ID: 200172917 546. ATAC-seq from GM18498 (ENCSR924SDV) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172913/ Series Accession: GSE172913 ID: 200172913 547. ATAC-seq from hindbrain (ENCSR176BYZ) (Submitter supplied) ATAC-seq on embryonic e13.5 mouse hindbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172912/ Series Accession: GSE172912 ID: 200172912 548. ATAC-seq from midbrain (ENCSR384JBF) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse midbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172911/ Series Accession: GSE172911 ID: 200172911 549. ATAC-seq from foreskin keratinocyte (ENCSR923WGJ) (Submitter supplied) ATAC-seq on primary keratinocytes in day 4.5 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 11 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172910/ Series Accession: GSE172910 ID: 200172910 550. ATAC-seq from GM19328 (ENCSR383RDZ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172904/ Series Accession: GSE172904 ID: 200172904 551. ATAC-seq from DND-41 (ENCSR660WSB) (Submitter supplied) ATAC-seq on human cell line DND-41 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172903/ Series Accession: GSE172903 ID: 200172903 552. ATAC-seq from midbrain (ENCSR382RUC) (Submitter supplied) ATAC-seq on embryonic e11.5 mouse midbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172900/ Series Accession: GSE172900 ID: 200172900 553. ATAC-seq from K562 (ENCSR920YDG) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172898/ Series Accession: GSE172898 ID: 200172898 554. ATAC-seq from K562 (ENCSR165JXS) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172897/ Series Accession: GSE172897 ID: 200172897 555. ATAC-seq from K562 (ENCSR163VQD) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172895/ Series Accession: GSE172895 ID: 200172895 556. ATAC-seq from HG02938 (ENCSR920FQJ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172894/ Series Accession: GSE172894 ID: 200172894 557. ATAC-seq from GM18909 (ENCSR917WJS) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172890/ Series Accession: GSE172890 ID: 200172890 558. ATAC-seq from HG03469 (ENCSR163KRG) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172888/ Series Accession: GSE172888 ID: 200172888 559. ATAC-seq from common myeloid progenitor (ENCSR914PYX) (Submitter supplied) PSU mouse CMP 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172887/ Series Accession: GSE172887 ID: 200172887 560. ATAC-seq from NCI-H929 (ENCSR382LBS) (Submitter supplied) ATAC-seq on human cell line NCI-H929 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172886/ Series Accession: GSE172886 ID: 200172886 561. ATAC-seq from breast epithelium (ENCSR654UYP) (Submitter supplied) ATAC-seq on human breast epithelium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172884/ Series Accession: GSE172884 ID: 200172884 562. ATAC-seq from thyroid gland (ENCSR914DTI) (Submitter supplied) ATAC-seq on human thyroid gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172883/ Series Accession: GSE172883 ID: 200172883 563. ATAC-seq from HG02610 (ENCSR905PWV) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172879/ Series Accession: GSE172879 ID: 200172879 564. ATAC-seq from HG03039 (ENCSR381LJX) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172878/ Series Accession: GSE172878 ID: 200172878 565. ATAC-seq from foreskin keratinocyte (ENCSR158XTU) (Submitter supplied) ATAC-seq on primary keratinocytes in day 2.5 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 9 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172877/ Series Accession: GSE172877 ID: 200172877 566. ATAC-seq from heart (ENCSR652CNN) (Submitter supplied) ATAC-seq on embryonic e12.5 mouse heart For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172876/ Series Accession: GSE172876 ID: 200172876 567. ATAC-seq from forebrain (ENCSR903GMO) (Submitter supplied) ATAC-seq on embryonic e13.5 mouse forebrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172874/ Series Accession: GSE172874 ID: 200172874 568. ATAC-seq from foreskin keratinocyte (ENCSR649RCV) (Submitter supplied) ATAC-seq on primary keratinocytes in day 5.5 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172873/ Series Accession: GSE172873 ID: 200172873 569. ATAC-seq from limb (ENCSR377YDY) (Submitter supplied) ATAC-seq on embryonic e11.5 mouse limb For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172871/ Series Accession: GSE172871 ID: 200172871 570. ATAC-seq from GM21423 (ENCSR902CFR) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172869/ Series Accession: GSE172869 ID: 200172869 571. ATAC-seq from HG03439 (ENCSR376YMU) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172867/ Series Accession: GSE172867 ID: 200172867 572. ATAC-seq from limb (ENCSR896XIN) (Submitter supplied) ATAC-seq on embryonic e13.5 mouse limb For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172866/ Series Accession: GSE172866 ID: 200172866 573. ATAC-seq from lung (ENCSR647AOY) (Submitter supplied) ATAC-seq on human lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172864/ Series Accession: GSE172864 ID: 200172864 574. ATAC-seq from right lobe of liver (ENCSR373TDL) (Submitter supplied) ATAC-seq on human right lobe of liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172863/ Series Accession: GSE172863 ID: 200172863 575. ATAC-seq from midbrain (ENCSR154BXN) (Submitter supplied) ATAC-seq on embryonic e12.5 mouse midbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172861/ Series Accession: GSE172861 ID: 200172861 576. ATAC-seq from K562 (ENCSR644KPP) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172860/ Series Accession: GSE172860 ID: 200172860 577. ATAC-seq from GM19395 (ENCSR372IGW) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172856/ Series Accession: GSE172856 ID: 200172856 578. ATAC-seq from body of pancreas (ENCSR152PSA) (Submitter supplied) ATAC-seq on human body of pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172855/ Series Accession: GSE172855 ID: 200172855 579. ATAC-seq from heart (ENCSR371KFW) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse heart For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172853/ Series Accession: GSE172853 ID: 200172853 580. ATAC-seq from frontal cortex (ENCSR889WQX) (Submitter supplied) mouse frontal cortex For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172852/ Series Accession: GSE172852 ID: 200172852 581. ATAC-seq from K562 (ENCSR888JRM) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172848/ Series Accession: GSE172848 ID: 200172848 582. ATAC-seq from HG02852 (ENCSR368FYV) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172846/ Series Accession: GSE172846 ID: 200172846 583. ATAC-seq from embryonic facial prominence (ENCSR150RMQ) (Submitter supplied) ATAC-seq on embryonic e11.5 mouse embryonic facial prominence For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172845/ Series Accession: GSE172845 ID: 200172845 584. ATAC-seq from hematopoietic stem cell (ENCSR366VBB) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172843/ Series Accession: GSE172843 ID: 200172843 585. ATAC-seq from GM21825 (ENCSR641KNU) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172841/ Series Accession: GSE172841 ID: 200172841 586. ATAC-seq from GM19035 (ENCSR637MUF) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172839/ Series Accession: GSE172839 ID: 200172839 587. ATAC-seq from intestine (ENCSR150EOO) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse intestine For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172837/ Series Accession: GSE172837 ID: 200172837 588. ATAC-seq from embryonic facial prominence (ENCSR876SYO) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse embryonic facial prominence For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172836/ Series Accession: GSE172836 ID: 200172836 589. ATAC-seq from GM19467 (ENCSR635CAC) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172833/ Series Accession: GSE172833 ID: 200172833 590. ATAC-seq from K562 (ENCSR874GAJ) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172831/ Series Accession: GSE172831 ID: 200172831 591. ATAC-seq from GM19468 (ENCSR635AIF) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172829/ Series Accession: GSE172829 ID: 200172829 592. ATAC-seq from HG02759 (ENCSR144ZXR) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172826/ Series Accession: GSE172826 ID: 200172826 593. ATAC-seq from K562 (ENCSR366CEQ) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172825/ Series Accession: GSE172825 ID: 200172825 594. ATAC-seq from stomach (ENCSR363SKQ) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse stomach For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172822/ Series Accession: GSE172822 ID: 200172822 595. ATAC-seq from monocyte (ENCSR862JVD) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172821/ Series Accession: GSE172821 ID: 200172821 596. ATAC-seq from erythroid progenitor cell (ENCSR136XSY) (Submitter supplied) PSU mouse CFU-E 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172818/ Series Accession: GSE172818 ID: 200172818 597. ATAC-seq from K562 (ENCSR632VDU) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172817/ Series Accession: GSE172817 ID: 200172817 598. ATAC-seq from GM18861 (ENCSR628PLS) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172816/ Series Accession: GSE172816 ID: 200172816 599. ATAC-seq from HG03095 (ENCSR359HFH) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172814/ Series Accession: GSE172814 ID: 200172814 600. ATAC-seq from lung (ENCSR627OCR) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172813/ Series Accession: GSE172813 ID: 200172813 601. ATAC-seq from embryonic facial prominence (ENCSR358MOW) (Submitter supplied) ATAC-seq on embryonic e13.5 mouse embryonic facial prominence For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172812/ Series Accession: GSE172812 ID: 200172812 602. ATAC-seq from GM19438 (ENCSR134OSR) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172811/ Series Accession: GSE172811 ID: 200172811 603. ATAC-seq from HG03442 (ENCSR858GTE) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172806/ Series Accession: GSE172806 ID: 200172806 604. ATAC-seq from GM18508 (ENCSR357WQH) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172805/ Series Accession: GSE172805 ID: 200172805 605. ATAC-seq from HG03520 (ENCSR624CTU) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172804/ Series Accession: GSE172804 ID: 200172804 606. ATAC-seq from HG02970 (ENCSR857MCZ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172803/ Series Accession: GSE172803 ID: 200172803 607. ATAC-seq from foreskin keratinocyte (ENCSR356KRQ) (Submitter supplied) ATAC-seq on primary keratinocytes in day 0.0 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172802/ Series Accession: GSE172802 ID: 200172802 608. ATAC-seq from hindbrain (ENCSR623GSD) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse hindbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172800/ Series Accession: GSE172800 ID: 200172800 609. ATAC-seq from HG02943 (ENCSR123WME) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172797/ Series Accession: GSE172797 ID: 200172797 610. ATAC-seq from GM21576 (ENCSR122NDR) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172796/ Series Accession: GSE172796 ID: 200172796 611. ATAC-seq from K562 (ENCSR121GEL) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172795/ Series Accession: GSE172795 ID: 200172795 612. ATAC-seq from HG02840 (ENCSR854ZBA) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172793/ Series Accession: GSE172793 ID: 200172793 613. ATAC-seq from heart left ventricle (ENCSR117PYB) (Submitter supplied) ATAC-seq on human heart left ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172792/ Series Accession: GSE172792 ID: 200172792 614. ATAC-seq from stomach (ENCSR851SBY) (Submitter supplied) ATAC-seq on human stomach For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172791/ Series Accession: GSE172791 ID: 200172791 615. ATAC-seq from sigmoid colon (ENCSR355SGJ) (Submitter supplied) ATAC-seq on human sigmoid colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172790/ Series Accession: GSE172790 ID: 200172790 616. ATAC-seq from HG02885 (ENCSR621JYI) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172788/ Series Accession: GSE172788 ID: 200172788 617. ATAC-seq from heart left ventricle (ENCSR851EBF) (Submitter supplied) ATAC-seq on human heart left ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172786/ Series Accession: GSE172786 ID: 200172786 618. ATAC-seq from stomach (ENCSR618HDK) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse stomach For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172784/ Series Accession: GSE172784 ID: 200172784 619. ATAC-seq from heart left ventricle (ENCSR846VPV) (Submitter supplied) ATAC-seq on human heart left ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172783/ Series Accession: GSE172783 ID: 200172783 620. ATAC-seq from neutrophil (ENCSR351YUI) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172782/ Series Accession: GSE172782 ID: 200172782 621. ATAC-seq from GM21360 (ENCSR105SCQ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172775/ Series Accession: GSE172775 ID: 200172775 622. ATAC-seq from HG03432 (ENCSR839UOB) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172773/ Series Accession: GSE172773 ID: 200172773 623. ATAC-seq from HG03139 (ENCSR615YIL) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172772/ Series Accession: GSE172772 ID: 200172772 624. ATAC-seq from liver (ENCSR609OHJ) (Submitter supplied) ATAC-seq on postnatal p0 mouse liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172770/ Series Accession: GSE172770 ID: 200172770 625. ATAC-seq from lung (ENCSR102NGD) (Submitter supplied) ATAC-seq on postnatal p0 mouse lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172769/ Series Accession: GSE172769 ID: 200172769 626. ATAC-seq from GM19397 (ENCSR839IAD) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172768/ Series Accession: GSE172768 ID: 200172768 627. ATAC-seq from forebrain (ENCSR836PUC) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse forebrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172767/ Series Accession: GSE172767 ID: 200172767 628. ATAC-seq from HG03460 (ENCSR345NVR) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172766/ Series Accession: GSE172766 ID: 200172766 629. ATAC-seq from thoracic aorta (ENCSR344ZTM) (Submitter supplied) ATAC-seq on human thoracic aorta For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172765/ Series Accession: GSE172765 ID: 200172765 630. ATAC-seq from esophagus muscularis mucosa (ENCSR609GST) (Submitter supplied) ATAC-seq on human esophagus muscularis mucosa For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172764/ Series Accession: GSE172764 ID: 200172764 631. ATAC-seq from liver (ENCSR343TXK) (Submitter supplied) ATAC-seq on embryonic e13.5 mouse liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172763/ Series Accession: GSE172763 ID: 200172763 632. ATAC-seq from HG03135 (ENCSR096VEO) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172761/ Series Accession: GSE172761 ID: 200172761 633. ATAC-seq from HG03097 (ENCSR608KJD) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172760/ Series Accession: GSE172760 ID: 200172760 634. ATAC-seq from midbrain (ENCSR096JCC) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse midbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172759/ Series Accession: GSE172759 ID: 200172759 635. ATAC-seq from K562 (ENCSR343TQX) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172758/ Series Accession: GSE172758 ID: 200172758 636. ATAC-seq from HG03565 (ENCSR835WBW) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172757/ Series Accession: GSE172757 ID: 200172757 637. ATAC-seq from HG03103 (ENCSR833ACP) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172752/ Series Accession: GSE172752 ID: 200172752 638. ATAC-seq from HG02884 (ENCSR604YEQ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172751/ Series Accession: GSE172751 ID: 200172751 639. ATAC-seq from K562 (ENCSR342GFK) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172750/ Series Accession: GSE172750 ID: 200172750 640. ATAC-seq from tibial nerve (ENCSR831KAH) (Submitter supplied) ATAC-seq on human tibial nerve For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172747/ Series Accession: GSE172747 ID: 200172747 641. ATAC-seq from heart (ENCSR603MWL) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse heart For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172745/ Series Accession: GSE172745 ID: 200172745 642. ATAC-seq from lung (ENCSR335VJW) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172744/ Series Accession: GSE172744 ID: 200172744 643. ATAC-seq from K562 (ENCSR096HVF) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172743/ Series Accession: GSE172743 ID: 200172743 644. ATAC-seq from esophagus squamous epithelium (ENCSR096BPX) (Submitter supplied) ATAC-seq on human esophagus squamous epithelium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172741/ Series Accession: GSE172741 ID: 200172741 645. ATAC-seq from activated regulatory T-cells (ENCSR826JKN) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172740/ Series Accession: GSE172740 ID: 200172740 646. ATAC-seq from HG03378 (ENCSR824DUE) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172739/ Series Accession: GSE172739 ID: 200172739 647. ATAC-seq from stomach (ENCSR597BGP) (Submitter supplied) ATAC-seq on postnatal p0 mouse stomach For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172738/ Series Accession: GSE172738 ID: 200172738 648. ATAC-seq from K562 (ENCSR091YVK) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172736/ Series Accession: GSE172736 ID: 200172736 649. ATAC-seq from GM19372 (ENCSR335JVB) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172735/ Series Accession: GSE172735 ID: 200172735 650. ATAC-seq from gastrocnemius medialis (ENCSR823ZCR) (Submitter supplied) ATAC-seq on human gastrocnemius medialis For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172734/ Series Accession: GSE172734 ID: 200172734 651. ATAC-seq from WTC11 (ENCSR089KIJ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172732/ Series Accession: GSE172732 ID: 200172732 652. ATAC-seq from HG03575 (ENCSR331JFZ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172731/ Series Accession: GSE172731 ID: 200172731 653. ATAC-seq from K562 (ENCSR822IYG) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172729/ Series Accession: GSE172729 ID: 200172729 654. ATAC-seq from HG02642 (ENCSR821QHC) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172727/ Series Accession: GSE172727 ID: 200172727 655. ATAC-seq from hindbrain (ENCSR088UYE) (Submitter supplied) ATAC-seq on embryonic e12.5 mouse hindbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172723/ Series Accession: GSE172723 ID: 200172723 656. ATAC-seq from HG02623 (ENCSR821JHD) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172722/ Series Accession: GSE172722 ID: 200172722 657. ATAC-seq from HG03457 (ENCSR322SBN) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172720/ Series Accession: GSE172720 ID: 200172720 658. ATAC-seq from HG03521 (ENCSR594TMY) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172719/ Series Accession: GSE172719 ID: 200172719 659. ATAC-seq from heart (ENCSR820ACB) (Submitter supplied) ATAC-seq on embryonic e11.5 mouse heart For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172718/ Series Accession: GSE172718 ID: 200172718 660. ATAC-seq from SK-N-SH (ENCSR587TRP) (Submitter supplied) ATAC-seq on human cell line SK-N-SH For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172714/ Series Accession: GSE172714 ID: 200172714 661. ATAC-seq from midbrain (ENCSR819QOJ) (Submitter supplied) ATAC-seq on embryonic e13.5 mouse midbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172713/ Series Accession: GSE172713 ID: 200172713 662. ATAC-seq from sigmoid colon (ENCSR086OGH) (Submitter supplied) ATAC-seq on human sigmoid colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172711/ Series Accession: GSE172711 ID: 200172711 663. ATAC-seq from GM21737 (ENCSR315QWI) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172710/ Series Accession: GSE172710 ID: 200172710 664. ATAC-seq from K562 (ENCSR314EDO) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172707/ Series Accession: GSE172707 ID: 200172707 665. ATAC-seq from forebrain (ENCSR810HQR) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse forebrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172703/ Series Accession: GSE172703 ID: 200172703 666. ATAC-seq from GM18505 (ENCSR084FHK) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172702/ Series Accession: GSE172702 ID: 200172702 667. ATAC-seq from coronary artery (ENCSR584AXZ) (Submitter supplied) ATAC-seq on human coronary artery For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172701/ Series Accession: GSE172701 ID: 200172701 668. ATAC-seq from GM18519 (ENCSR312UCH) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172700/ Series Accession: GSE172700 ID: 200172700 669. ATAC-seq from RWPE2 (ENCSR080SNF) (Submitter supplied) ATAC-seq on human cell line RWPE-2 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172699/ Series Accession: GSE172699 ID: 200172699 670. ATAC-seq from hindbrain (ENCSR312LQX) (Submitter supplied) ATAC-seq on postnatal p0 mouse hindbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172698/ Series Accession: GSE172698 ID: 200172698 671. ATAC-seq from K562 (ENCSR582NPJ) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172697/ Series Accession: GSE172697 ID: 200172697 672. ATAC-seq from GM18868 (ENCSR580JBA) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172696/ Series Accession: GSE172696 ID: 200172696 673. ATAC-seq from intestine (ENCSR079GOY) (Submitter supplied) ATAC-seq on postnatal p0 mouse intestine For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172694/ Series Accession: GSE172694 ID: 200172694 674. ATAC-seq from foreskin keratinocyte (ENCSR572UDP) (Submitter supplied) ATAC-seq on primary keratinocytes in day 2.0 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 9 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172693/ Series Accession: GSE172693 ID: 200172693 675. ATAC-seq from K562 (ENCSR803QIE) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172691/ Series Accession: GSE172691 ID: 200172691 676. ATAC-seq from forebrain (ENCSR310MLB) (Submitter supplied) ATAC-seq on postnatal p0 mouse forebrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172688/ Series Accession: GSE172688 ID: 200172688 677. ATAC-seq from K562 (ENCSR800RAH) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172686/ Series Accession: GSE172686 ID: 200172686 678. ATAC-seq from spleen (ENCSR078EBD) (Submitter supplied) ATAC-seq on human spleen For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172685/ Series Accession: GSE172685 ID: 200172685 679. ATAC-seq from HG03175 (ENCSR305XRF) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172679/ Series Accession: GSE172679 ID: 200172679 680. ATAC-seq from foreskin keratinocyte (ENCSR798IJQ) (Submitter supplied) ATAC-seq on primary keratinocytes in day 6.0 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172678/ Series Accession: GSE172678 ID: 200172678 681. ATAC-seq from forebrain (ENCSR559FAJ) (Submitter supplied) ATAC-seq on embryonic e12.5 mouse forebrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172676/ Series Accession: GSE172676 ID: 200172676 682. ATAC-seq from Right ventricle myocardium superior (ENCSR074WMH) (Submitter supplied) ATAC-seq on human right ventricle myocardium superior For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172675/ Series Accession: GSE172675 ID: 200172675 683. ATAC-seq from GM18873 (ENCSR304ZDQ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172674/ Series Accession: GSE172674 ID: 200172674 684. ATAC-seq from K562 (ENCSR304UWR) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172673/ Series Accession: GSE172673 ID: 200172673 685. ATAC-seq from K562 (ENCSR303NUP) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172672/ Series Accession: GSE172672 ID: 200172672 686. ATAC-seq from liver (ENCSR302LIV) (Submitter supplied) ATAC-seq on embryonic e12.5 mouse liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172670/ Series Accession: GSE172670 ID: 200172670 687. ATAC-seq from HG03280 (ENCSR554WGQ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172669/ Series Accession: GSE172669 ID: 200172669 688. ATAC-seq from hindbrain (ENCSR798FDL) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse hindbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172668/ Series Accession: GSE172668 ID: 200172668 689. ATAC-seq from cerebellum (ENCSR554JQP) (Submitter supplied) mouse cerebellum For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172667/ Series Accession: GSE172667 ID: 200172667 690. ATAC-seq from heart (ENCSR068YGC) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse heart For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172664/ Series Accession: GSE172664 ID: 200172664 691. ATAC-seq from heart (ENCSR552ABC) (Submitter supplied) ATAC-seq on embryonic e13.5 mouse heart For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172663/ Series Accession: GSE172663 ID: 200172663 692. ATAC-seq from K562 (ENCSR793YFK) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172661/ Series Accession: GSE172661 ID: 200172661 693. ATAC-seq from K562 (ENCSR068MIW) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172660/ Series Accession: GSE172660 ID: 200172660 694. ATAC-seq from limb (ENCSR551WBK) (Submitter supplied) ATAC-seq on embryonic e12.5 mouse limb For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172659/ Series Accession: GSE172659 ID: 200172659 695. ATAC-seq from erythroblast (ENCSR793RAV) (Submitter supplied) PSU mouse Erythroblast 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172658/ Series Accession: GSE172658 ID: 200172658 696. ATAC-seq from megakaryocyte-erythroid progenitor cell (ENCSR064IHX) (Submitter supplied) PSU mouse MEP 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172657/ Series Accession: GSE172657 ID: 200172657 697. ATAC-seq from K562 (ENCSR548GGF) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172652/ Series Accession: GSE172652 ID: 200172652 698. ATAC-seq from subcutaneous adipose tissue (ENCSR540BML) (Submitter supplied) ATAC-seq on human adipose tissue For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172647/ Series Accession: GSE172647 ID: 200172647 699. ATAC-seq from HG03196 (ENCSR063UNG) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172646/ Series Accession: GSE172646 ID: 200172646 700. ATAC-seq from K562 (ENCSR296YAS) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172645/ Series Accession: GSE172645 ID: 200172645 701. ATAC-seq from HG03066 (ENCSR040PBN) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172638/ Series Accession: GSE172638 ID: 200172638 702. ATAC-seq from foreskin keratinocyte (ENCSR290YMN) (Submitter supplied) ATAC-seq on primary keratinocytes in day 1.0 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172637/ Series Accession: GSE172637 ID: 200172637 703. ATAC-seq from omental fat pad (ENCSR788TRR) (Submitter supplied) ATAC-seq on human adipose tissue of omentum For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172635/ Series Accession: GSE172635 ID: 200172635 704. ATAC-seq from HG02973 (ENCSR038WVV) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172634/ Series Accession: GSE172634 ID: 200172634 705. ATAC-seq from HG03342 (ENCSR528YDD) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172631/ Series Accession: GSE172631 ID: 200172631 706. ATAC-seq from liver (ENCSR032HKE) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172630/ Series Accession: GSE172630 ID: 200172630 707. ATAC-seq from K562 (ENCSR524ZSN) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172628/ Series Accession: GSE172628 ID: 200172628 708. ATAC-seq from liver (ENCSR785NEL) (Submitter supplied) ATAC-seq on embryonic e11.5 mouse liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172627/ Series Accession: GSE172627 ID: 200172627 709. ATAC-seq from HG02798 (ENCSR524CPZ) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172626/ Series Accession: GSE172626 ID: 200172626 710. ATAC-seq from embryonic facial prominence (ENCSR031HDN) (Submitter supplied) ATAC-seq on embryonic e12.5 mouse embryonic facial prominence For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172625/ Series Accession: GSE172625 ID: 200172625 711. ATAC-seq from K562 (ENCSR522ALT) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172624/ Series Accession: GSE172624 ID: 200172624 712. ATAC-seq from HG03354 (ENCSR025MEO) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172623/ Series Accession: GSE172623 ID: 200172623 713. ATAC-seq from foreskin keratinocyte (ENCSR521RAL) (Submitter supplied) ATAC-seq on primary keratinocytes in day 4.0 of differentiation For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 9 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172622/ Series Accession: GSE172622 ID: 200172622 714. ATAC-seq from GM21390 (ENCSR024WOD) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172620/ Series Accession: GSE172620 ID: 200172620 715. ATAC-seq from kidney (ENCSR023QZX) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse kidney For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172616/ Series Accession: GSE172616 ID: 200172616 716. ATAC-seq from neural tube (ENCSR282YTE) (Submitter supplied) ATAC-seq on embryonic e11.5 mouse neural tube For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172610/ Series Accession: GSE172610 ID: 200172610 717. ATAC-seq from body of pancreas (ENCSR773USD) (Submitter supplied) ATAC-seq on human body of pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172607/ Series Accession: GSE172607 ID: 200172607 718. ATAC-seq from body of pancreas (ENCSR515CDW) (Submitter supplied) ATAC-seq on human body of pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172605/ Series Accession: GSE172605 ID: 200172605 719. ATAC-seq from GM21381 (ENCSR512YXO) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172603/ Series Accession: GSE172603 ID: 200172603 720. ATAC-seq from K562 (ENCSR021GTX) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172602/ Series Accession: GSE172602 ID: 200172602 721. ATAC-seq from K562 (ENCSR281LEY) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172601/ Series Accession: GSE172601 ID: 200172601 722. ATAC-seq from GM19023 (ENCSR512FHU) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172598/ Series Accession: GSE172598 ID: 200172598 723. ATAC-seq from G1E (ENCSR280ZDP) (Submitter supplied) PSU mouse G1E 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172597/ Series Accession: GSE172597 ID: 200172597 724. ATAC-seq from K562 (ENCSR509MYW) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172596/ Series Accession: GSE172596 ID: 200172596 725. ATAC-seq from Peyer's patch (ENCSR017RQC) (Submitter supplied) ATAC-seq on human Peyer's patch For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172595/ Series Accession: GSE172595 ID: 200172595 726. ATAC-seq from HG03558 (ENCSR278JWM) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172594/ Series Accession: GSE172594 ID: 200172594 727. ATAC-seq from GM21367 (ENCSR509JPT) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172593/ Series Accession: GSE172593 ID: 200172593 728. ATAC-seq from GM21786 (ENCSR275LCF) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172592/ Series Accession: GSE172592 ID: 200172592 729. ATAC-seq from K562 (ENCSR508LLL) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172589/ Series Accession: GSE172589 ID: 200172589 730. ATAC-seq from K562 (ENCSR503EZG) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172587/ Series Accession: GSE172587 ID: 200172587 731. ATAC-seq from K562 (ENCSR017LGQ) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172586/ Series Accession: GSE172586 ID: 200172586 732. ATAC-seq from forebrain (ENCSR273UFV) (Submitter supplied) ATAC-seq on embryonic e11.5 mouse forebrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172582/ Series Accession: GSE172582 ID: 200172582 733. ATAC-seq from megakaryocyte (ENCSR498DQA) (Submitter supplied) PSU mouse Megakaryocyte 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172576/ Series Accession: GSE172576 ID: 200172576 734. ATAC-seq from GM18520 (ENCSR762YFD) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172575/ Series Accession: GSE172575 ID: 200172575 735. ATAC-seq from transverse colon (ENCSR761TKU) (Submitter supplied) ATAC-seq on human transverse colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172574/ Series Accession: GSE172574 ID: 200172574 736. ATAC-seq from hindbrain (ENCSR012YAB) (Submitter supplied) ATAC-seq on embryonic e11.5 mouse hindbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172572/ Series Accession: GSE172572 ID: 200172572 737. ATAC-seq from K562 (ENCSR761CBY) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172567/ Series Accession: GSE172567 ID: 200172567 738. ATAC-seq from GM18867 (ENCSR492FJO) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172566/ Series Accession: GSE172566 ID: 200172566 739. ATAC-seq from ovary (ENCSR490MSG) (Submitter supplied) ATAC-seq on human ovary For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172563/ Series Accession: GSE172563 ID: 200172563 740. ATAC-seq from embryonic facial prominence (ENCSR261ICG) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse embryonic facial prominence For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172562/ Series Accession: GSE172562 ID: 200172562 741. ATAC-seq from kidney (ENCSR758IRM) (Submitter supplied) ATAC-seq on embryonic e14.5 mouse kidney For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172561/ Series Accession: GSE172561 ID: 200172561 742. ATAC-seq from HG03064 (ENCSR487SOP) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172559/ Series Accession: GSE172559 ID: 200172559 743. ATAC-seq from gastroesophageal sphincter (ENCSR260ZIV) (Submitter supplied) ATAC-seq on human esophagogastric junction For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172558/ Series Accession: GSE172558 ID: 200172558 744. ATAC-seq from GM18907 (ENCSR487QSB) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172556/ Series Accession: GSE172556 ID: 200172556 745. ATAC-seq from stomach (ENCSR486XAS) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse stomach For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172554/ Series Accession: GSE172554 ID: 200172554 746. ATAC-seq from GM18858 (ENCSR011NJP) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172553/ Series Accession: GSE172553 ID: 200172553 747. ATAC-seq from K562 (ENCSR259HTB) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172551/ Series Accession: GSE172551 ID: 200172551 748. ATAC-seq from K562 (ENCSR005BVE) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172549/ Series Accession: GSE172549 ID: 200172549 749. ATAC-seq from granulocyte monocyte progenitor cell (ENCSR257PGU) (Submitter supplied) PSU mouse GMP 50,000 cells ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172547/ Series Accession: GSE172547 ID: 200172547 750. ATAC-seq from HG03571 (ENCSR000RBT) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172546/ Series Accession: GSE172546 ID: 200172546 751. ATAC-seq from HG03060 (ENCSR470ZNM) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172538/ Series Accession: GSE172538 ID: 200172538 752. ATAC-seq from midbrain (ENCSR468GUI) (Submitter supplied) ATAC-seq on embryonic e15.5 mouse midbrain For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172535/ Series Accession: GSE172535 ID: 200172535 753. ATAC-seq from K562 (ENCSR745KUZ) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172533/ Series Accession: GSE172533 ID: 200172533 754. ATAC-seq from K562 (ENCSR741QNS) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172532/ Series Accession: GSE172532 ID: 200172532 755. ATAC-seq from liver (ENCSR255XTC) (Submitter supplied) ATAC-seq on embryonic e16.5 mouse liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: Mouse ENCODE Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172531/ Series Accession: GSE172531 ID: 200172531 756. ATAC-seq from K562 (ENCSR737HKX) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172524/ Series Accession: GSE172524 ID: 200172524 757. ATAC-seq from GM18511 (ENCSR253QLW) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172518/ Series Accession: GSE172518 ID: 200172518 758. A unified atlas of CD8 T cell dysfunctional states in cancer and infection (Submitter supplied) CD8 T cells play an essential role in defense against viral and bacterial infections and in tumor immunity. Deciphering T cell loss of functionality is complicated by the conspicuous heterogeneity of CD8 T cell states described across different experimental and clinical settings. By carrying out a unified analysis of over 300 ATAC-seq and RNA-seq experiments from twelve independent studies of CD8 T cell dysfunction in cancer and infection we defined a shared differentiation trajectory towards terminal dysfunction and its underlying transcriptional drivers and revealed a universal early bifurcation of functional and dysfunctional T cell activation states across models. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL21103 15 Samples FTP download: GEO (BED, MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692722 Series Accession: GSE164978 ID: 200164978 759. Activation of γ-globin gene expression by GATA1 and NF-Y in hereditary persistence of fetal hemoglobin (Submitter supplied) Naturally occurring mutations in the γ-globin promoters can result in hereditary persistence of fetal hemoglobin (HPFH), a benign condition that ameliorates the severity of β-hemoglobinopathies through increased post-natal fetal hemoglobin (HbF) expression. Mutations in the γ-globin promoters result in loss or de novo recruitment of transcription factors, yet the cis­-regulatory elements involved in γ-globin transcription in the context of HPFH are not clearly defined. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL20301 45 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA639052 Series Accession: GSE152338 ID: 200152338 760. Single Cell Epigenome Profiling of Cardiac Non-myocyte (Submitter supplied) The mammalian heart is composed of a variety types of cells that can be roughly categorized into cardiomyocytes and non-myocytes. Instead of being bystanders of cardiac function, cardiac non-myocytes provide critical structural, mechanical and electrophysiological support to the working myocardium. However, the precise cellular identity and molecular features of the non-myocytes at single cell level remain elusive. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 2 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661319 Series Accession: GSE157445 ID: 200157445 761. Chromatin accessibility in D. discoideium (AX4) in different developemental stages [ATAC-seq II] (Submitter supplied) The goal of ATAC-seq is to identify the open chromatin regions in the wild-type D.discoideum at different developmental stages (vegetative, streaming, mound and fruiting bodyies). Three biological replicates were assigned for each group and in total 13 groups were prepared for ATAC-seq libraries. We mapped about 30 million reads per sample to D. discoideum with bowtie2 workflow. Open chromatin regions were deducted by ChIPseeker with corrected p < 0.05. more... Organism: Dictyostelium discoideum Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL26000 13 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA643828 Series Accession: GSE153733 ID: 200153733 762. Role of Epigenetics in Unicellular to Multicellular Transition in Dictyostelium (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Dictyostelium discoideum; Dictyostelium discoideum AX4 Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 117 Samples FTP download: GEO (H5, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137604/ Series Accession: GSE137604 ID: 200137604 763. Chromatin accessibility in D. discoideium (AX2) in different developmental stages (Submitter supplied) The goal of ATAC-seq is to identify the open chromatin regions in the wild-type D.discoideum at different developmental stages (vegetative, streaming, mound and fruiting bodyies). Two biological replicates were assigned for each group and in total 8 groups were prepared for ATAC-seq libraries. We mapped about 10 million reads per sample to D. discoideum with bowtie2 workflow. Open chromatin regions were deducted by ChIPseeker with corrected p < 0.05. more... Organism: Dictyostelium discoideum Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL26360 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565991 Series Accession: GSE137598 ID: 200137598 764. Validation of protein arginine methyltransferase 5 (PRMT5) as a candidate therapeutic target in the spontaneous canine model of non-Hodgkin lymphoma [ATAC-seq] (Submitter supplied) Targeting PRMT5 in canine lymphoma: we characterized expression patterns of PRMT5 in canine lymphomas and correlated these with histological subtypes using tissue microarrays. We characterized expression of PRMT5 in three canine lymphoma-derived cell lines and primary lymph node biopsies. We have demonstrated that inhibition of PRMT5 leads to growth suppression and induction of apoptosis in canine lymphoma cell lines and primary canine lymphoma cells in a time and dose-dependent manner, while selectively decreasing global marks of symmetric dimethylarginine (SDMA) and histone H4 arginine 3 symmetric di-methylation. more... Organism: Canis lupus familiaris Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20988 10 Samples FTP download: GEO (BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA656732 Series Accession: GSE156084 ID: 200156084 765. Tet2 inactivation enhances the anti-tumor activity of tumor-infiltrating lymphocytes (Submitter supplied) Inactivation of tumor infiltrating lymphocytes (TILs) is one of the limiting factors of anti-tumor immunity during tumor onset and progression. Epigenetic abnormalities are regarded as a major culprit contributing to the dysfunction of TILs within tumor microenvironment. In this study, we used a murine model of melanoma to discover that Tet2 inactivation significantly enhances the anti-tumor activity of TILs, with the efficacy comparable to immune checkpoint inhibition imposed by anti-PD-L1 treatment. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 20 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA639537 Series Accession: GSE152496 ID: 200152496 766. ELOF1 is a transcription-coupled DNA repair factor that directs RNA polymerase II ubiquitylation (Submitter supplied) Removal of transcription-blocking DNA lesions requires the binding of transcription-coupled repair (TCR) factors to DNA damage-stalled RNA polymerase II (RNAPII). The full repertoire of factors required for TCR remains to be elucidated. Through genome-wide CRISPR screens and strand-specific ChIP-seq, we identify the RNAPII-associated factor ELOF1 as a new core TCR component. Mechanistically, ELOF1 does not affect the association of TCR components CSB and the CRL4CSA ubiquitin ligase, but instead regulates RNAPII ubiquitylation, and subsequent ubiquitin-dependent recruitment of repair factors. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 5 related Platforms 101 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630062 Series Accession: GSE149760 ID: 200149760 767. RNA-seq and ATAC-sequencing of esophageal cells after HH pathway activation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 66 Samples FTP download: GEO (BIGWIG, H5, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148876/ Series Accession: GSE148876 ID: 200148876 768. ATAC sequencing of esophageal cells from wild type and Krt5SmoM2 mice (Submitter supplied) In this study, we used ATAC sequencing to compare the chromatin landscape of esophageal cells in which hedgehog (HH) pathway has been activated (K5SmoM2), to control esophageal cells (WT). We identified more than 50% of the peaks differentially opened in both conditions. Among these differentially opened peaks in EpHI cells, we identified chromatin regions in key columnar markers. Taken together these results show that HH pathway activation triggers chromatin landscape remodeling to facilitate transcommitment. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 11 Samples FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA626007 Series Accession: GSE148872 ID: 200148872 769. A single cell atlas of human cornea that defines its development, limbal progenitor cells and their interactions with the immune cell (Submitter supplied) To study the development and composition of human ocular surface, we performed single cell (sc) RNA-Seq at key embryonic, fetal and adult stages and generated the first atlas of the corneal and conjunctival cell types from development to adulthood. The conjunctival epithelium is the first to be specified in the epithelial layer , followed by the corneal epithelium and the establishment of proliferative epithelial progenitors, which predate the formation of limbal niche by a few weeks. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 32 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA655218 Series Accession: GSE155683 ID: 200155683 770. Cis-regulatory dissection of cone development reveals a broad role for Otx2 and Oc transcription factors [ATAC-seq] (Submitter supplied) The vertebrate retina is generated by retinal progenitor cells (RPCs), which produce >100 cell types. Although some RPCs produce many cell types, other RPCs produce restricted types of daughter cells, such as a cone photoreceptor and a horizontal cell (HC). We used genome-wide assays of chromatin structure to compare the profiles of a restricted cone/HC and those of other RPCs in chicks. These data nominated regions of regulatory activity, which were tested in tissue, leading to the identification of many cis-regulatory modules (CRMs) active in cone/HC RPCs and developing cones. more... Organism: Gallus gallus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19787 5 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637029 Series Accession: GSE151707 ID: 200151707 771. Chromatin accessibility profiling of primary human T cells (Submitter supplied) Genetically-engineered immune cell therapies have been in development for decades and recently have proven effective to treat some types of cancer. CRISPR-based genome editing methods enabling more flexible and targeted sequence integrations than viral transduction have potential to extend the clinical utility of cell therapies. Realization of this potential depends on improved knowledge of how coding and non-coding sites throughout the genome can be modified efficiently and on improved methods to discover novel synthetic DNA sequences that can be introduced at targeted sites to enhance critical immune cell functions. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 48 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA533822 Series Accession: GSE130089 ID: 200130089 772. Multi-functional barcoding enables high resolution study of clonal dynamics (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL24676 GPL18573 17 Samples FTP download: GEO (MTX, NARROWPEAK, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151431/ Series Accession: GSE151431 ID: 200151431 773. Multi-functional barcoding enables high resolution study of clonal dynamics (ATAC-seq) (Submitter supplied) The remarkable evolutionary capacity of cancer poses major challenges to current therapeutic efforts, and results from the vast clonal heterogeneity and ability of individual cancer cells to adapt to diverse selective pressures. More complete mechanistic understanding of the basis of therapeutic resistance has been limited by difficulties in coupling information regarding genetic and epigenetic alterations present within individual cells to their respective transcriptomic and functional outputs. To this end, we developed a novel high-complexity expressed barcode system, ClonMapper, that integrates DNA barcoding with single-cell RNA-sequencing and clonal isolation to characterize thousands of clones within a mixed cancer cell population. In applying this system to the chronic lymphocytic leukemia cell line HG3 in the setting of resistance to fludarabine-based chemotherapy, we discover pretreatment sub-populations with distinct expression profiles (i.e. upregulated Wnt, Notch and CXCR4 signaling) that not only confer distinct treatment survivorship trajectories, but also provide the basis for long-term clonal equilibrium between co-existing clones in the absence of treatment. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635809 Series Accession: GSE151430 ID: 200151430 774. Impact of the bone microenvironment on phenotypic plasticity of ER+ breast cancer cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL24676 GPL20301 107 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160583/ Series Accession: GSE160583 ID: 200160583 775. Impact of the bone microenvironment on phenotypic plasticity of ER+ breast cancer cells [ATAC-Seq] (Submitter supplied) ATAC sequencing was performed to evaluate epigenetic changes induced by the bone microenvironment. We found a global epigenetic reprogramming of ER+ cancer cells deriving from bone which drives stemness and endocrine resistance Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673696 Series Accession: GSE160582 ID: 200160582 776. Developmental chromatin programs determine oncogenic competence in melanoma [ATAC-seq] (Submitter supplied) Oncogenes are only transforming in certain cellular contexts, a phenomenon called oncogenic competence. Here, using a combination of a human pluripotent stem cell-derived cancer model along with zebrafish transgenesis, we demonstrate that the transforming ability of BRAFV600E along with additional mutations depends upon the intrinsic transcriptional program present in the cell of origin. In both systems, melanocytes are largely resistant to mutations, whereas both neural crest and melanoblast populations are readily transformed. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA721734 Series Accession: GSE172028 ID: 200172028 777. Integrative assessment of classical and molecular phenotypes in MCF10A cells [ATAC-seq] (Submitter supplied) Maintenance of proper phenotypic state of mammary epithelial cells is crucial for normal function, however the molecular networks underlying control of various cellular phenotypes are not well understood. To date most studies have assessed the impact of extracellular signals on a single phenotypic response, such as proliferation, or have focused on elucidation of molecular changes associated with single perturbations. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 48 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA639183 Series Accession: GSE152408 ID: 200152408 778. M1BP cooperates with CP190 to activate transcription at TAD borders and promote chromatin insulator activity (ATAC-seq) (Submitter supplied) Genome organization is driven by forces affecting transcriptional state, but the relationship between transcription and genome architecture remains unclear. Here, we identified the Drosophila transcription factor Motif 1 Binding Protein (M1BP) in physical association with the gypsy chromatin insulator core complex, including the universal insulator protein CP190. M1BP is required for enhancer-blocking and barrier activities of the gypsy insulator as well as its proper nuclear localization. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL22106 9 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA715215 Series Accession: GSE169105 ID: 200169105 779. A dual functions of autism-related chromatin remodeler CHD8 in developmental and adult neurogenesis (Submitter supplied) The loss-of-function mutations in the chromatin remodeler CHD8, a high-risk factor in autism spectrum disorder (ASD), lead to severe developmental delay, however, the underlying mechanisms remains elusive. Here, we use transcriptome and genomic occupancy reveal that CHD8 regulates chromatin accessibility and activates neurogenesis-related genes for cortical neurogenesis. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24247 GPL21103 9 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625199 Series Accession: GSE148608 ID: 200148608 780. ATAC-seq of uncultured CD112high and CD112low long-term(LT) human hematopoietic stem cells (HSC) from umbilical cord blood (Submitter supplied) We performed ATAC-sequencing to elucidate the chromatin accessibility that underlie the differential in vitro priming and regeneration phenotypes of CD112high and CD112low LT-HSC. Therefore, we prospectively isolated these subpopulations from 3 independent human umbilical cord blood pools and subjected to ATAC-sequencing directly. We show that distinct subsets of human LT-HSC respond differently to regeneration-mediated stress and that INKA1 governs these distinct stemness states where CD112low LT-HSC are marked by an alternative state of quiescence with high INKA1 and low H4K16ac preserving self-renewal and regenerative capacity upon successive rounds of regeneration-mediated stress. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 5 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE172nnn/GSE172005/ Series Accession: GSE172005 ID: 200172005 781. Comprehensive characterization of tissue-specific chromatin accessibility in L2 Caenorhabditis elegans nematodes (Submitter supplied) Recently developed single cell technologies allow researchers to characterize cell states at ever greater resolution and scale. C. elegans is a particularly tractable system for studying development, and recent single cell RNA-seq studies characterized the gene expression patterns for nearly every cell type in the embryo and at the second larval stage (L2). Gene expression patterns are useful for learning about gene function and give insight into the biochemical state of different cell types; however, in order to understand these cell types, we must also determine how these gene expression levels are regulated. more... Organism: Caenorhabditis elegans Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL15716 GPL19757 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659788 Series Accession: GSE157017 ID: 200157017 782. A Transcriptional Switch Governs Fibroblast Activation in Heart Disease (Submitter supplied) In diseased organs, stress-activated signaling cascades alter chromatin, triggering maladaptive cell state transitions. Fibroblast activation is a common tissue stress response that worsens lung, liver, kidney and heart disease, yet its mechanistic basis remains obscure. Pharmacologic BET inhibition alleviates cardiac dysfunction, providing a tool to interrogate and modulate cardiac cell states as a potential therapeutic approach. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL24247 GPL19057 GPL21103 56 Samples FTP download: GEO (BED, BIGWIG, BW, CSV, MTX, TSV, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA655922 Series Accession: GSE155882 ID: 200155882 783. Mapping Astrocyte Transcriptional Signatures in Response to Neuroactive Compounds (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19415 GPL19057 53 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171595/ Series Accession: GSE171595 ID: 200171595 784. Astrocytic chromatin remodeling in response to neuroactive compounds [ATAC-seq] (Submitter supplied) The goal of the study is to profile chromatin landscape of astrocytes in response to neuroactive chemicals. We performed ATAC-seq on mES_astrocytes induced for 30 minutes in presence of neuroactive chemicals (glutamate, gamma-aminobutyric acid, acetylcholine, noradrenaline, and serotonin) to understand how induction from different types of neuronal signaling remodels chromatin in astrocytes. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA720146 Series Accession: GSE171594 ID: 200171594 785. Attrition of X chromosome inactivation in aged hematopoietic stem cells (Submitter supplied) During X chromosome inactivation (XCI), the inactive X chromosome (Xi) is recruited to the nuclear lamina at the periphery of the nucleus. Beside X chromosome (X chr) reactivation resulting in a highly penetrant aging-like hematopoietic malignancy, little is known about XCI in aged hematopoietic stem cells (HSCs) . Here, we demonstrate that LaminA/C defines a distinct repressive nuclear compartment for XCI in young HSCs, and its reduction in aged HSCs correlates with an impairment in the overall control of XCI. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA703945 Series Accession: GSE167214 ID: 200167214 786. Essential role of ThPOK autoregulatory loop in maintenance of mature CD4 T cell identity and function [ATAC-seq] (Submitter supplied) The transcription factor ThPOK is critical for homeostasis and differentiation of mature T helper cells. Overall goal of this experiment is to show divergent Chromatin pattern of ThPOK-dependent autoregulatory loop disrupted in CD4 T cells compared to WT. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA713901 Series Accession: GSE168771 ID: 200168771 787. Chromatin architecture transitions from zebrafish sperm through early embryogenesis [ChIP-seq II] (Submitter supplied) Coordinated gene expression is fundamental for cell identity, development and differentiation, and relies on a highly organized genome. Our central goal is to determine when and how higher-order 3D chromatin architecture is first established in early vertebrate embryos, its resemblance to paternal/sperm architecture, its impact on transcription, and its role in developmental transitions. We exploited the natural transition in zebrafish embryogenesis, where the zygotic genome remains transcriptionally silent until the onset of zygotic genome activation (ZGA) to assess the establishment of higher order 3D chromatin architecture by obtaining dense genome-wide Hi-C maps.  Through this approach, we defined higher-order architecture by combining advanced low-cell in-situ HiC methods with a Drosophila HiC spike-in control.  We have demonstrated the histone packed zebrafish sperm lack topological associated domains, but instead displays unique “hinge-like” domains. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 2 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA703030 Series Accession: GSE167125 ID: 200167125 788. Chromatin architecture transitions from zebrafish sperm through early embryogenesis [ATAC-seq] (Submitter supplied) Coordinated gene expression is fundamental for cell identity, development and differentiation, and relies on a highly organized genome. Our central goal is to determine when and how higher-order 3D chromatin architecture is first established in early vertebrate embryos, its resemblance to paternal/sperm architecture, its impact on transcription, and its role in developmental transitions. We exploited the natural transition in zebrafish embryogenesis, where the zygotic genome remains transcriptionally silent until the onset of zygotic genome activation (ZGA) to assess the establishment of higher order 3D chromatin architecture by obtaining dense genome-wide Hi-C maps.  Through this approach, we defined higher-order architecture by combining advanced low-cell in-situ HiC methods with a Drosophila HiC spike-in control.  We have demonstrated the histone packed zebrafish sperm lack topological associated domains, but instead displays unique “hinge-like” domains. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 2 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640315 Series Accession: GSE152743 ID: 200152743 789. Chromatin architecture transitions from zebrafish sperm through early embryogenesis [ChIP-seq] (Submitter supplied) Coordinated gene expression is fundamental for cell identity, development and differentiation, and relies on a highly organized genome. Our central goal is to determine when and how higher-order 3D chromatin architecture is first established in early vertebrate embryos, its resemblance to paternal/sperm architecture, its impact on transcription, and its role in developmental transitions. We exploited the natural transition in zebrafish embryogenesis, where the zygotic genome remains transcriptionally silent until the onset of zygotic genome activation (ZGA) to assess the establishment of higher order 3D chromatin architecture by obtaining dense genome-wide Hi-C maps.  Through this approach, we defined higher-order architecture by combining advanced low-cell in-situ HiC methods with a Drosophila HiC spike-in control.  We have demonstrated the histone packed zebrafish sperm lack topological associated domains, but instead displays unique “hinge-like” domains. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 2 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640314 Series Accession: GSE152742 ID: 200152742 790. Chromatin architecture transitions from zebrafish sperm through early embryogenesis [Hi-C] (Submitter supplied) Coordinated gene expression is fundamental for cell identity, development and differentiation, and relies on a highly organized genome. Our central goal is to determine when and how higher-order 3D chromatin architecture is first established in early vertebrate embryos, its resemblance to paternal/sperm architecture, its impact on transcription, and its role in developmental transitions. We exploited the natural transition in zebrafish embryogenesis, where the zygotic genome remains transcriptionally silent until the onset of zygotic genome activation (ZGA) to assess the establishment of higher order 3D chromatin architecture by obtaining dense genome-wide Hi-C maps.  Through this approach, we defined higher-order architecture by combining advanced low-cell in-situ HiC methods with a Drosophila HiC spike-in control.  We have demonstrated the histone packed zebrafish sperm lack topological associated domains, but instead displays unique “hinge-like” domains. more... Organism: Danio rerio Type: Other Platforms: GPL18413 GPL24995 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640313 Series Accession: GSE152741 ID: 200152741 791. Arid1a-Plagl1-Hh signaling is indispensable for differentiation-associated cell cycle arrest of tooth root progenitors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 11 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166360/ Series Accession: GSE166360 ID: 200166360 792. Arid1a-Plagl1-Hh signaling is indispensable for differentiation-associated cell cycle arrest of tooth root progenitors [ATAC-Seq] (Submitter supplied) We show that loss of Arid1a impairs the differentiation-associated cell cycle arrest of tooth root progenitors through Hh signaling regulation, leading to shortened roots. Our data suggest that Plagl1, as a cofactor, endows Arid1a with its cell type/spatial functional specificity. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 3 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166354/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA700603 Series Accession: GSE166354 ID: 200166354 793. The connectome of neural crest enhancers reveals regulatory features of signaling systems (Submitter supplied) The neural crest is a migratory stem cell population that gives rise to a wide array of cell types. The formation and differentiation of neural crest cells are controlled by a complex transcriptional network, which endows these cells with unique features such as multipotency and stemness. During migration, signaling systems modulate subcircuits within this network to ensure that neural crest cells differentiate at the right time and place. more... Organism: Gallus gallus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19787 25 Samples FTP download: GEO (BEDPE, BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630814 Series Accession: GSE150006 ID: 200150006 794. A dual role for H2A.Z.1 in modulating Initiating and Elongating RNAPII dynamics (Submitter supplied) RNA Polymerase II (RNAPII) pausing immediately downstream of the transcription start site (TSS) is a critical rate limiting step for the induction of most metazoan genes. During pause-release, RNAPII encounters a highly conserved +1 H2A.Z nucleosome, yet how this histone variant contributes to transcription is poorly understood. Here, using an inducible protein degron system combined with genomic approaches and live cell super-resolution microscopy, we show that H2A.Z.1 modulates RNAPII dynamics across most genes in murine embryonic stem cells (ESCs). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL13112 GPL19057 89 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601462 Series Accession: GSE143737 ID: 200143737 795. A comprehensive transcriptome signature of murine hematopoietic stem cell aging (Submitter supplied) We have performed ATAC-seq in highly purified Hematopoeitic Stem cells (HSC, LSK/SLAM) from young (4-5mo) and old (20-24mo) C57BL/6J in order to investigate differences in chromatin accessible sites between these 2 groups. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BROADPEAK, CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA701572 Series Accession: GSE166674 ID: 200166674 796. Simultaneous trimodal single cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq (Submitter supplied) Single-cell measurements of cellular characteristics have been instrumental in understanding the heterogeneous pathways that drive differentiation, cellular responses to signals, and human disease. Recent advances have allowed paired capture of protein abundance and transcriptomic state, but a lack of epigenetic information in these assays has left a missing link to gene regulation. Using the heterogeneous mixture of cells in human peripheral blood as a test case, we developed a novel scATAC-seq workflow that increases signal-to-noise and allows paired measurement of cell surface markers and chromatin accessibility: Integrated Cellular Indexing of Chromatin Landscape and Epitopes (ICICLE-seq). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL24676 34 Samples FTP download: GEO (CSV, H5, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158013/ Series Accession: GSE158013 ID: 200158013 797. ATACseq of Aging Drosophila ISCs [NGS2046] (Submitter supplied) Tissue homeostasis requires long-term lineage fidelity of somatic stem cells. Whether and how age-related changes in somatic stem cells impact the faithful execution of lineage decisions remains largely unknown. Here, we address this question using genome-wide chromatin accessibility and transcriptome analysis as well as single cell RNA-seq to explore stem cell intrinsic changes in the aging Drosophila intestine. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17275 16 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA662724 Series Accession: GSE157776 ID: 200157776 798. Chromosome Compartments on the Inactive X Guide TAD Formation Independently of Transcription during X-Reactivation (Submitter supplied) To investigate the dynamics of X-chromosome reactivation, we differentiated mouse embryonic stem cells (ESCs) into neural precursor cells (NPCs) and later reprogrammed them into induced pluripotent stem cells (iPSCs). During the conversions of NPCs into iPSC, we assessed the kinetics of X-chromosome reactivation. We generated allele-specific RNA-seq datasets to assess gene reactivation dynamics, employed ATAC-seq to investigate chromatin opening dynamics and performed in situ Hi-C to explore dynamics of chromosome structure. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17021 116 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661320 Series Accession: GSE157448 ID: 200157448 799. ATAC-seq of human lung cell types (Submitter supplied) We report the application of the assay for transposase-accessible chromatin using sequencing (ATAC-seq) for the profiling of open chromatin human primary lung cell types implicated in lung disease pathology, such as chronic obstructive pulmonary disease. We generated chromatin accessibility profiles for human primary bronchial epithelial cells, small airway epithelial cells, alveolar type II pneumocytes, and lung fibroblasts using Omni-ATAC-seq. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 14 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640387 Series Accession: GSE152779 ID: 200152779 800. RNA-seq of P14 CD8 T cells during acute LCMV infection (Submitter supplied) We performed RNA-seq, ATAC-seq, and H3K27Ac ChIP-seq on P14 CD8 T cells during acute infection with LCMV Armstrong on days 0 (naïve cells), 9 (memory precursor effector cells (MPEC) and short-lived effector cells (SLECs)), and 40+ (memory cells) post infection. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150441/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632046 Series Accession: GSE150441 ID: 200150441 801. H3K27Ac ChIP-seq of P14 CD8 T cells during acute LCMV infection (Submitter supplied) We performed RNA-seq, ATAC-seq, and H3K27Ac ChIP-seq on P14 CD8 T cells during acute infection with LCMV Armstrong on days 0 (naïve cells), 9 (memory precursor effector cells (MPEC) and short-lived effector cells (SLECs)), and 40+ (memory cells) post infection. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632043 Series Accession: GSE150440 ID: 200150440 802. ATAC-seq of P14 CD8 T cells during acute LCMV infection (Submitter supplied) We performed RNA-seq, ATAC-seq, and H3K27Ac ChIP-seq on P14 CD8 T cells during acute infection with LCMV Armstrong on days 0 (naïve cells), 9 (memory precursor effector cells (MPEC) and short-lived effector cells (SLECs)), and 40+ (memory cells) post infection. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150438/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632040 Series Accession: GSE150438 ID: 200150438 803. Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) analysis of U937 cells depleted of NSPs (Submitter supplied) ATAC-Seq was used to investigate the impact of genetic ablation of neutrophil serine proteases CTSG, ELANE, and PRTN3 on chromatin dynamics and accessibility. Differential analysis identified thousands of peaks with elevated accessibility in independent ΔNSP clones relative to controls. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597898 Series Accession: GSE142660 ID: 200142660 804. MIG, MIG-E47, or MIG-ID2 transduced CD8 T cells in vitro (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142344/ Series Accession: GSE142344 ID: 200142344 805. RNA-seq of MIG, MIG-E47, or MIG-ID2 transduced CD8 T cells in vitro (Submitter supplied) We performed RNA-seq and ATAC-seq on in vitro activated P14 CD8 T cells transduced with MIG (empty), MIG-E47, or MIG-ID2. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596673 Series Accession: GSE142343 ID: 200142343 806. ATAC-seq of MIG, MIG-E47, or MIG-ID2 transduced CD8 T cells in vitro (Submitter supplied) We performed RNA-seq and ATAC-seq on in vitro activated P14 CD8 T cells transduced with MIG (empty), MIG-E47, or MIG-ID2. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142342/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596674 Series Accession: GSE142342 ID: 200142342 807. ATAC-Seq of Wild Type pDC Transcriptomes (CpG 0h, 2h) (Submitter supplied) Purpose: The goals of this study are to compare the pDC chromatin structure (ATAC-seq) at steady state and at 2h after CpG activation. Methods: Cells were harvested and frozen in culture media containing FBS and 5% DMSO. Cryopreserved cells were sent to Active Motif to perform the ATAC-seq assay. The cells were then thawed in a 37°C water bath, pelleted, washed with cold PBS, and tagmented as previously described (Buenrostro et al., 2013), with some modifications based on (Corces et al., 2017). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA718276 Series Accession: GSE171075 ID: 200171075 808. T3-Dependent Transcriptional Programming by TR-beta Requires SWI/SNF Chromatin Remodelers (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18460 31 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168954/ Series Accession: GSE168954 ID: 200168954 809. T3-Dependent Transcriptional Programming by TR-beta Requires SWI/SNF Chromatin Remodelers (ATAC-Seq) (Submitter supplied) We used an integrated genomics approach to profile and characterize the cistrome of TR-beta, map changes in chromatin accessibility, and capture the transcriptomic changes in response to T3 in a normal thyroid cell line. Our data demonstrates that T3 promotes significant shifts in TR-beta genomic occupancy, which are associated with differential chromatin accessibility, and differential recruitment of SWI/SNF chromatin remodelers. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18460 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714654 Series Accession: GSE168953 ID: 200168953 810. Cardiac cell type-specific gene regulatory programs and disease risk association [RNA-seq] (Submitter supplied) Misregulated gene expression in human hearts can result in cardiovascular diseases that are leading causes of morbidity and mortality worldwide. However, the limited information on the genomic location of candidate cis-regulatory elements (cCRE) such as enhancers and promoters in distinct cardiac cell types has restricted the understanding of these diseases. Here, we defined >287,000 cCREs in the four chambers of the human heart at single-cell resolution, which revealed cCREs and candidate transcription factors associated with cardiac cell types in a region-dependent manner and during heart failure. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 7 Samples FTP download: GEO (MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165838/ Series Accession: GSE165838 ID: 200165838 811. Cardiac cell type-specific gene regulatory programs and disease risk association [ATAC-seq] (Submitter supplied) Misregulated gene expression in human hearts can result in cardiovascular diseases that are leading causes of morbidity and mortality worldwide. However, the limited information on the genomic location of candidate cis-regulatory elements (cCRE) such as enhancers and promoters in distinct cardiac cell types has restricted the understanding of these diseases. Here, we defined >287,000 cCREs in the four chambers of the human heart at single-cell resolution, which revealed cCREs and candidate transcription factors associated with cardiac cell types in a region-dependent manner and during heart failure. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 14 Samples FTP download: GEO (MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165837/ Series Accession: GSE165837 ID: 200165837 812. Regulatory diversity contributes to divergent transcriptional response to dietary changes in mammals (Submitter supplied) Regulatory innovation is central to the evolution of species. Different nutritional sources are one environmental pressure that can select for novel regulatory elements. Dietary composition changes, including exposure to “western” diets with excess fat content, can lead to transcriptional regulatory changes in the liver. In order to investigate how transcriptional regulatory changes in response to a high fat diet diverge across species, we profiled chromatin accessibility, histone modifications and the transcriptome in livers of rhesus macaques and mice fed high fat and normal diets. Organism: Macaca mulatta Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19129 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672697 Series Accession: GSE160247 ID: 200160247 813. ATAC-seq in shControl Huh7 and shARID1A Huh7 cells without or with rapamycin treatment (Submitter supplied) mTORC1 is a conserved central controller of cell growth, which is commonly activated in hepatocellular carcinoma (HCC), driving liver tumorigenesis. In addition to its established cytoplasmic functions, mTORC1 is found in the nucleus where it regulates transcription by all three major RNA polymerases. However, precisely how mTORC1 controls gene expression remains poorly understood. Herein we show that mTORC1 interacts with the BAF SWI/SNF complex and regulates genome-wide chromatin remodeling through ARID1A. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667864 Series Accession: GSE159163 ID: 200159163 814. Genome-wide epigenome mapping in human induced pluripotent cells in WT and KMT2CKO cells. [ATAC-Seq] (Submitter supplied) KMT2C is a histone methyltransferase that mono-methylates lysine four at enhancer regions. This study compares the open and closed chromatin region between WT and KMT2C KO cells and further evaluates their functional validation by applying the invitro hematopoietic differentiation protocol. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667004 Series Accession: GSE158917 ID: 200158917 815. Chromatin accessibility in human K562 erythroleukemia cells profiled upon heat shock, recovery, and heat-induced transcriptional memory (Submitter supplied) ATAC-seq in human K562 erythroleukemia cells that were either unconditioned (s_uC and HSS_uC), preconditioned with a single heat shock exposure (s_pC), or preconditioned with multiple heat exposures (HSS_pC). After two day recovery from the preconditioning, during which the cells underwent two mitotic divisions, the cells were additionally subjected to a single heat shock to analyze heat-induced changes in chromatin accessibility in unconditioned versus preconditioned cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 28 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647368 Series Accession: GSE154744 ID: 200154744 816. RUNX1/ETO and mutant KIT both contribute to programming the transcriptional and chromatin landscape in t(8;21) AML (ATAC-Seq) (Submitter supplied) Acute myeloid leukemia development occurs in a step-wise fashion whereby an original driver mutation is followed by additional mutations. The first type of mutations tends to be in genes encoding members of the epigenetic/transcription regulatory machinery (i.e. RUNX1, DNMT3, TET2), while the secondary mutations often involve genes encoding members of signalling pathways that cause uncontrolled growth of such cells such as the growth factor receptors c-KIT of FLT3. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 3 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA639043 Series Accession: GSE152332 ID: 200152332 817. ATAC-Seq of the Yeast Metabolic Cycle (Submitter supplied) Time course extraction of the Yeast Metabolic cycle, followed by ATAC seq processing. These files are used in a multi-omics study to complement a series of datasets that cover other moluecular layers of the Yeast Metabolic Cycle, including metabolomics, gene expression and histone modificaiton datasets. Our goal in this project is to create statistical integratory tools to comprehend YMC regulatory mechanism. Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19756 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA610238 Series Accession: GSE146350 ID: 200146350 818. BMI1 Maintains the Regulatory T cell Epigenomic Landscape to Prevent Inflammatory Bowel Disease (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21290 GPL21493 GPL20775 21 Samples FTP download: GEO (BED, CEL, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171190/ Series Accession: GSE171190 ID: 200171190 819. BMI1 Maintains the Regulatory T cell Epigenomic Landscape to Prevent Inflammatory Bowel Disease (Mouse ATAC-Seq) (Submitter supplied) FOXP3+ Treg cells are expanded within the inflamed intestine of human Crohn’s disease, yet FOXP3-mediated gene repression within these cells is lost. The Polycomb repressive complexes play a role in FOXP3 target gene regulation, but deeper mechanistic insight is incomplete. We have now specifically identified the Polycomb Repressive Complex 1 (PRC1) family member, BMI1 in the regulation of a pro-inflammatory enhancer network in both human and murine Tregs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 6 Samples FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA718602 Series Accession: GSE171187 ID: 200171187 820. BMI1 Maintains the Regulatory T cell Epigenomic Landscape to Prevent Inflammatory Bowel Disease (Human ATAC-Seq) (Submitter supplied) FOXP3+ Treg cells are expanded within the inflamed intestine of human Crohn’s disease, yet FOXP3-mediated gene repression within these cells is lost. The Polycomb repressive complexes play a role in FOXP3 target gene regulation, but deeper mechanistic insight is incomplete. We have now specifically identified the Polycomb Repressive Complex 1 (PRC1) family member, BMI1 in the regulation of a pro-inflammatory enhancer network in both human and murine Tregs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21290 2 Samples FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE171nnn/GSE171186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA718603 Series Accession: GSE171186 ID: 200171186 821. Promoter G-quadruplex folding precedes transcription and is controlled by chromatin (Submitter supplied) Four stranded DNA G-quadruplex (G4) structures are common features of the human genome that are primarily found in active promoters associated with elevated transcription. Here, we explore the relationship between the folding of G4s in promoters, transcription and chromatin state. Transcriptional inhibition by DRB or by triptolide reveals that promoter G4 formation, as assessed G4 ChIP-seq, is not reliant on transcriptional activity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 182 Samples FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA681342 Series Accession: GSE162299 ID: 200162299 822. Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution (Submitter supplied) In this study, we map chromatin accessibility and gene expression at single-cell resolution in the developing human cerebral cortex. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL20301 24 Samples FTP download: GEO (BED, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162170/ Series Accession: GSE162170 ID: 200162170 823. Pancreatic cancer prognosis is predicted by chromatin accessibility (RNA-Seq) (Submitter supplied) About 50% of resected pancreatic ductal adenocarcinoma (PDAC) recur within just one year following surgery. Prognostic molecular markers predicting rapid recurrence are currently unavailable. We hypothesized that epigenetic differences at the level of chromatin accessibility, potentially linked to distinct differentiation states, might distinguish rapidly recurrent from non-recurrent tumors. Therefore, we interrogated genome-wide chromatin accessibility using Assay for Transposase-Accessible Chromatin sequencing (ATAC-seq) on EpCAM+ PDAC malignant cells sorted from a cohort of 54 treatment-naïve resected tumors, in hopes of defining a tumor-intrinsic chromatin signature associated with recurrence. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 48 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124231/ Series Accession: GSE124231 ID: 200124231 824. ATAC-seq from mucosa of gallbladder (ENCSR695FLC) (Submitter supplied) ATAC-seq on human mucosa of gallbladder For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170988/ Series Accession: GSE170988 ID: 200170988 825. ATAC-seq from right lobe of liver (ENCSR685ZMP) (Submitter supplied) ATAC-seq on human right lobe of liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170971/ Series Accession: GSE170971 ID: 200170971 826. ATAC-seq from left lung (ENCSR682ETE) (Submitter supplied) ATAC-seq on human left lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170968/ Series Accession: GSE170968 ID: 200170968 827. ATAC-seq from gastroesophageal sphincter (ENCSR670REK) (Submitter supplied) ATAC-seq on human esophagogastric junction For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170959/ Series Accession: GSE170959 ID: 200170959 828. ATAC-seq from adrenal gland (ENCSR651SOJ) (Submitter supplied) ATAC-seq on human adrenal gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170937/ Series Accession: GSE170937 ID: 200170937 829. ATAC-seq from GM12878 (ENCSR637XSC) (Submitter supplied) ATAC-seq on human cell line GM12878 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170918/ Series Accession: GSE170918 ID: 200170918 830. ATAC-seq from tibial artery (ENCSR630REB) (Submitter supplied) ATAC-seq on human tibial artery For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170909/ Series Accession: GSE170909 ID: 200170909 831. ATAC-seq from left lobe of liver (ENCSR624ODL) (Submitter supplied) ATAC-seq on human left lobe of liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170899/ Series Accession: GSE170899 ID: 200170899 832. ATAC-seq from right lobe of liver (ENCSR607BTF) (Submitter supplied) ATAC-seq on human right lobe of liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170876/ Series Accession: GSE170876 ID: 200170876 833. ATAC-seq from ovary (ENCSR996ZCR) (Submitter supplied) ATAC-seq on human ovary For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170869/ Series Accession: GSE170869 ID: 200170869 834. ATAC-seq from upper lobe of right lung (ENCSR990NNX) (Submitter supplied) ATAC-seq on human upper lobe of right lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170862/ Series Accession: GSE170862 ID: 200170862 835. ATAC-seq from left colon (ENCSR600ZHS) (Submitter supplied) ATAC-seq on human left colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170848/ Series Accession: GSE170848 ID: 200170848 836. ATAC-seq from Panc1 (ENCSR591PIX) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170824/ Series Accession: GSE170824 ID: 200170824 837. ATAC-seq from colonic mucosa (ENCSR970UNF) (Submitter supplied) ATAC-seq on human colonic mucosa For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 4 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170821/ Series Accession: GSE170821 ID: 200170821 838. ATAC-seq from heart left ventricle (ENCSR399OSE) (Submitter supplied) ATAC-seq on human heart left ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170791/ Series Accession: GSE170791 ID: 200170791 839. ATAC-seq from ovary (ENCSR392UJM) (Submitter supplied) ATAC-seq on human ovary For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170765/ Series Accession: GSE170765 ID: 200170765 840. ATAC-seq from right lobe of liver (ENCSR952SPO) (Submitter supplied) ATAC-seq on human right lobe of liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170761/ Series Accession: GSE170761 ID: 200170761 841. ATAC-seq from left cardiac atrium (ENCSR390SLL) (Submitter supplied) ATAC-seq on human left cardiac atrium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170758/ Series Accession: GSE170758 ID: 200170758 842. ATAC-seq from lower lobe of right lung (ENCSR948MQC) (Submitter supplied) ATAC-seq on human lower lobe of right lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170747/ Series Accession: GSE170747 ID: 200170747 843. ATAC-seq from heart right ventricle (ENCSR563ZNI) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170721/ Series Accession: GSE170721 ID: 200170721 844. ATAC-seq from lower lobe of left lung (ENCSR555ZDH) (Submitter supplied) ATAC-seq on human lower lobe of left lung For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170676/ Series Accession: GSE170676 ID: 200170676 845. ATAC-seq from heart left ventricle (ENCSR925LGW) (Submitter supplied) ATAC-seq on human heart left ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170652/ Series Accession: GSE170652 ID: 200170652 846. ATAC-seq from adrenal gland (ENCSR553LAZ) (Submitter supplied) ATAC-seq on human adrenal gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170643/ Series Accession: GSE170643 ID: 200170643 847. ATAC-seq from pancreas (ENCSR918TVE) (Submitter supplied) ATAC-seq on human pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170632/ Series Accession: GSE170632 ID: 200170632 848. ATAC-seq from right cardiac atrium (ENCSR177JWR) (Submitter supplied) ATAC-seq on human right cardiac atrium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170630/ Series Accession: GSE170630 ID: 200170630 849. ATAC-seq from posterior vena cava (ENCSR552QUA) (Submitter supplied) ATAC-seq on human posterior vena cava For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170616/ Series Accession: GSE170616 ID: 200170616 850. ATAC-seq from mesenteric fat pad (ENCSR551CSY) (Submitter supplied) ATAC-seq on human mesenteric fat pad For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170604/ Series Accession: GSE170604 ID: 200170604 851. ATAC-seq from adrenal gland (ENCSR548KIL) (Submitter supplied) ATAC-seq on human adrenal gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170578/ Series Accession: GSE170578 ID: 200170578 852. ATAC-seq from adrenal gland (ENCSR542RNG) (Submitter supplied) ATAC-seq on human adrenal gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170550/ Series Accession: GSE170550 ID: 200170550 853. ATAC-seq from psoas muscle (ENCSR890DWH) (Submitter supplied) ATAC-seq on human psoas muscle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170518/ Series Accession: GSE170518 ID: 200170518 854. ATAC-seq from heart right ventricle (ENCSR157OSO) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170517/ Series Accession: GSE170517 ID: 200170517 855. ATAC-seq from mucosa of urinary bladder (ENCSR153IUB) (Submitter supplied) ATAC-seq on human mucosa of urinary bladder For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170508/ Series Accession: GSE170508 ID: 200170508 856. ATAC-seq from pancreas (ENCSR530XBF) (Submitter supplied) ATAC-seq on human pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170507/ Series Accession: GSE170507 ID: 200170507 857. ATAC-seq from psoas muscle (ENCSR886VCC) (Submitter supplied) ATAC-seq on human psoas muscle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170491/ Series Accession: GSE170491 ID: 200170491 858. ATAC-seq from heart right ventricle (ENCSR522FGI) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170470/ Series Accession: GSE170470 ID: 200170470 859. ATAC-seq from stomach (ENCSR337UIU) (Submitter supplied) ATAC-seq on human stomach For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170447/ Series Accession: GSE170447 ID: 200170447 860. ATAC-seq from left ventricle myocardium superior (ENCSR133WJY) (Submitter supplied) ATAC-seq on human left ventricle myocardium superior For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170444/ Series Accession: GSE170444 ID: 200170444 861. ATAC-seq from heart right ventricle (ENCSR133CMC) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170433/ Series Accession: GSE170433 ID: 200170433 862. ATAC-seq from right lobe of liver (ENCSR516CPW) (Submitter supplied) ATAC-seq on human right lobe of liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170430/ Series Accession: GSE170430 ID: 200170430 863. ATAC-seq from HCT116 (ENCSR872WGW) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170407/ Series Accession: GSE170407 ID: 200170407 864. ATAC-seq from K562 (ENCSR868FGK) (Submitter supplied) ATAC-seq on human cell line K562 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170378/ Series Accession: GSE170378 ID: 200170378 865. ATAC-seq from sciatic nerve (ENCSR120MOY) (Submitter supplied) ATAC-seq on human sciatic nerve For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170354/ Series Accession: GSE170354 ID: 200170354 866. ATAC-seq from adrenal gland (ENCSR864ADD) (Submitter supplied) ATAC-seq on human adrenal gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170353/ Series Accession: GSE170353 ID: 200170353 867. ATAC-seq from PC-3 (ENCSR499ASS) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170337/ Series Accession: GSE170337 ID: 200170337 868. ATAC-seq from left cardiac atrium (ENCSR310UDW) (Submitter supplied) ATAC-seq on human left cardiac atrium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170327/ Series Accession: GSE170327 ID: 200170327 869. ATAC-seq from Right ventricle myocardium inferior (ENCSR855BMI) (Submitter supplied) ATAC-seq on human right ventricle myocardium inferior For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170321/ Series Accession: GSE170321 ID: 200170321 870. ATAC-seq from heart left ventricle (ENCSR310RJN) (Submitter supplied) ATAC-seq on human heart left ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170318/ Series Accession: GSE170318 ID: 200170318 871. ATAC-seq from adrenal gland (ENCSR113MBR) (Submitter supplied) ATAC-seq on human adrenal gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170314/ Series Accession: GSE170314 ID: 200170314 872. ATAC-seq from mucosa of descending colon (ENCSR496PPU) (Submitter supplied) ATAC-seq on human mucosa of descending colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170309/ Series Accession: GSE170309 ID: 200170309 873. ATAC-seq from gastrocnemius medialis (ENCSR308HPZ) (Submitter supplied) ATAC-seq on human gastrocnemius medialis For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170304/ Series Accession: GSE170304 ID: 200170304 874. ATAC-seq from sigmoid colon (ENCSR846VLJ) (Submitter supplied) ATAC-seq on human sigmoid colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170300/ Series Accession: GSE170300 ID: 200170300 875. ATAC-seq from esophagus mucosa (ENCSR303PWB) (Submitter supplied) ATAC-seq on human esophagus mucosa For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170282/ Series Accession: GSE170282 ID: 200170282 876. ATAC-seq from mucosa of descending colon (ENCSR491VXJ) (Submitter supplied) ATAC-seq on human mucosa of descending colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170280/ Series Accession: GSE170280 ID: 200170280 877. ATAC-seq from HepG2 (ENCSR291GJU) (Submitter supplied) ATAC-seq on human cell line HepG2 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170251/ Series Accession: GSE170251 ID: 200170251 878. ATAC-seq from right lobe of liver (ENCSR836FIL) (Submitter supplied) ATAC-seq on human right lobe of liver For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170250/ Series Accession: GSE170250 ID: 200170250 879. ATAC-seq from GM12878 (ENCSR095QNB) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170245/ Series Accession: GSE170245 ID: 200170245 880. ATAC-seq from GM23338 (ENCSR485TLP) (Submitter supplied) ATAC-seq on human cell line PGP1 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170231/ Series Accession: GSE170231 ID: 200170231 881. Epigenomic Tensor Predicts Disease Subtypes and Reveals Constrained Tumor Evolution [ATAC-seq] (Submitter supplied) Understanding the epigenomic evolution and specificity of disease subtypes from complex patient data remains a major biomedical problem. We here present DeCET (Decomposition and Classification of Epigenomic Tensors), an integrative computational approach for simultaneously analyzing hierarchical heterogeneous data, to identify robust epigenomic differences between tissue types, differentiation states, and disease subtypes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 16 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596653 Series Accession: GSE142330 ID: 200142330 882. Pancreatic cancer prognosis is predicted by chromatin accessibility (Quantseq) (Submitter supplied) About 50% of resected pancreatic ductal adenocarcinoma (PDAC) recur within just one year following surgery. Prognostic molecular markers predicting rapid recurrence are currently unavailable. We hypothesized that epigenetic differences at the level of chromatin accessibility, potentially linked to distinct differentiation states, might distinguish rapidly recurrent from non-recurrent tumors. Therefore, we interrogated genome-wide chromatin accessibility using Assay for Transposase-Accessible Chromatin sequencing (ATAC-seq) on EpCAM+ PDAC malignant cells sorted from a cohort of 54 treatment-naïve resected tumors, in hopes of defining a tumor-intrinsic chromatin signature associated with recurrence. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 97 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124230/ Series Accession: GSE124230 ID: 200124230 883. Pancreatic cancer prognosis is predicted by chromatin accessibility (ATAC-Seq) (Submitter supplied) About 50% of resected pancreatic ductal adenocarcinoma (PDAC) recur within just one year following surgery. Prognostic molecular markers predicting rapid recurrence are currently unavailable. We hypothesized that epigenetic differences at the level of chromatin accessibility, potentially linked to distinct differentiation states, might distinguish rapidly recurrent from non-recurrent tumors. Therefore, we interrogated genome-wide chromatin accessibility using Assay for Transposase-Accessible Chromatin sequencing (ATAC-seq) on EpCAM+ PDAC malignant cells sorted from a cohort of 54 treatment-naïve resected tumors, in hopes of defining a tumor-intrinsic chromatin signature associated with recurrence. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 80 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124229/ Series Accession: GSE124229 ID: 200124229 884. ATAC-seq from heart left ventricle (ENCSR286STX) (Submitter supplied) ATAC-seq on human heart left ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170227/ Series Accession: GSE170227 ID: 200170227 885. ATAC-seq from pancreas (ENCSR808ZMK) (Submitter supplied) ATAC-seq on human pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170216/ Series Accession: GSE170216 ID: 200170216 886. ATAC-seq from K562 (ENCSR483RKN) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170214/ Series Accession: GSE170214 ID: 200170214 887. ATAC-seq from cerebellum (ENCSR802GEV) (Submitter supplied) human UMB4727 cerebellum For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 1 Sample FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170195/ Series Accession: GSE170195 ID: 200170195 888. ATAC-seq from thyroid gland (ENCSR474XFV) (Submitter supplied) ATAC-seq on human thyroid gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170176/ Series Accession: GSE170176 ID: 200170176 889. ATAC-seq from sciatic nerve (ENCSR072UYN) (Submitter supplied) ATAC-seq on human sciatic nerve For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170146/ Series Accession: GSE170146 ID: 200170146 890. ATAC-seq from heart right ventricle (ENCSR053SGP) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170073/ Series Accession: GSE170073 ID: 200170073 891. ATAC-seq from uterus (ENCSR775SYU) (Submitter supplied) ATAC-seq on human uterus For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170053/ Series Accession: GSE170053 ID: 200170053 892. ATAC-seq from gastrocnemius medialis (ENCSR258JCL) (Submitter supplied) ATAC-seq on human gastrocnemius medialis For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170045/ Series Accession: GSE170045 ID: 200170045 893. ATAC-seq from psoas muscle (ENCSR774NXA) (Submitter supplied) ATAC-seq on human psoas muscle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170039/ Series Accession: GSE170039 ID: 200170039 894. ATAC-seq from pancreas (ENCSR251POP) (Submitter supplied) ATAC-seq on human pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170023/ Series Accession: GSE170023 ID: 200170023 895. ATAC-seq from body of pancreas (ENCSR765MXG) (Submitter supplied) ATAC-seq on human body of pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170016/ Series Accession: GSE170016 ID: 200170016 896. ATAC-seq from heart right ventricle (ENCSR439TZT) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170014/ Series Accession: GSE170014 ID: 200170014 897. ATAC-seq from HepG2 (ENCSR042AWH) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170012/ Series Accession: GSE170012 ID: 200170012 898. ATAC-seq from heart right ventricle (ENCSR437OOJ) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE170nnn/GSE170010/ Series Accession: GSE170010 ID: 200170010 899. ATAC-seq from psoas muscle (ENCSR040DJK) (Submitter supplied) ATAC-seq on human psoas muscle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169990/ Series Accession: GSE169990 ID: 200169990 900. ATAC-seq from adrenal gland (ENCSR241OBO) (Submitter supplied) ATAC-seq on human adrenal gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169983/ Series Accession: GSE169983 ID: 200169983 901. ATAC-seq from A549 (ENCSR032RGS) (Submitter supplied) ATAC-seq on human cell line A549 For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169955/ Series Accession: GSE169955 ID: 200169955 902. ATAC-seq from MCF-7 (ENCSR422SUG) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169929/ Series Accession: GSE169929 ID: 200169929 903. ATAC-seq from posterior cingulate cortex (ENCSR729FNL) (Submitter supplied) human UMB4727 posterior cingulate cortex For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 1 Sample FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169891/ Series Accession: GSE169891 ID: 200169891 904. ATAC-seq from ovary (ENCSR227FVE) (Submitter supplied) ATAC-seq on human ovary For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169879/ Series Accession: GSE169879 ID: 200169879 905. ATAC-seq from heart right ventricle (ENCSR710SMN) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169829/ Series Accession: GSE169829 ID: 200169829 906. ATAC-seq from pancreas (ENCSR705KEB) (Submitter supplied) ATAC-seq on human pancreas For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169809/ Series Accession: GSE169809 ID: 200169809 907. ATAC-seq from right cardiac atrium (ENCSR213YPO) (Submitter supplied) ATAC-seq on human right cardiac atrium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169805/ Series Accession: GSE169805 ID: 200169805 908. ATAC-seq from transverse colon (ENCSR404LLJ) (Submitter supplied) ATAC-seq on human transverse colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169798/ Series Accession: GSE169798 ID: 200169798 909. ATAC-seq from fallopian tube (ENCSR212LAZ) (Submitter supplied) ATAC-seq on human fallopian tube For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169789/ Series Accession: GSE169789 ID: 200169789 910. ATAC-seq from heart right ventricle (ENCSR204SMO) (Submitter supplied) ATAC-seq on human heart right ventricle For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169772/ Series Accession: GSE169772 ID: 200169772 911. ATAC-seq from thyroid gland (ENCSR201FIW) (Submitter supplied) ATAC-seq on human thyroid gland For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169771/ Series Accession: GSE169771 ID: 200169771 912. ATAC-seq from IMR-90 (ENCSR200OML) (Submitter supplied) For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169767/ Series Accession: GSE169767 ID: 200169767 913. Network effects of the 15q13.3 microdeletion on the transcriptome and epigenome in human induced neurons (Submitter supplied) Background: Deletions in the 15q13.3 region are associated with several neuropsychiatric disorders, including autism and schizophrenia. Association studies in humans and functional studies in mice have suggested that several genes within the 15q13.3 microdeletion may play a role in neuronal dysfunction, but the intermediate molecular mechanisms remain unknown. Methods: Induced pluripotent stem cells from 3 patients with the 15q13.3 microdeletion and 3 sex-matched controls were generated and converted into induced neurons. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL18573 GPL20795 GPL20301 107 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA557485 Series Accession: GSE135131 ID: 200135131 914. RNAseq and ATACseq of oyster hepatopancreas (Submitter supplied) Hox and ParaHox genes encode transcription factors with conserved similar expression patterns in divergent animals. The Pdx (Xlox) homeobox gene, for example, is expressed in a sharp spatial domain in the endodermal cell layer of the gut in chordates, echinoderms, annelids and molluscs. The significance of comparable gene expression patterns is unclear because it is not known if downstream transcriptional targets are also conserved. more... Organism: Crassostrea gigas Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL24338 GPL24339 3 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107713/ Series Accession: GSE107713 ID: 200107713 915. Genomic analysis of chromatin conformation and DNA damage distribution in ovarian cancer cell lines derived following acquired resistance to chemotherapy (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL16791 51 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149147/ Series Accession: GSE149147 ID: 200149147 916. Genomic analysis of chromatin conformation and DNA damage distribution in ovarian cancer cell lines derived following acquired resistance to chemotherapy [RNA-Seq] (Submitter supplied) Changes in chromatin organization are associated with resistance to anti-cancer drugs, such as platinum-based chemotherapy used as the primary treatment of ovarian cancer. We have examined the genomic distribution of chromatin accessibility changes, and relationship to gene expression changes, occurring during acquisition of resistance in vivo of high grade serous ovarian cancer (HGSOC) patients and whether this associates with genomic DNA damage distribution. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627461 Series Accession: GSE149146 ID: 200149146 917. Genomic analysis of chromatin conformation and DNA damage distribution in ovarian cancer cell lines derived following acquired resistance to chemotherapy [ATAC-Seq] (Submitter supplied) Changes in chromatin organization are associated with resistance to anti-cancer drugs, such as platinum-based chemotherapy used as the primary treatment of ovarian cancer. We have examined the genomic distribution of chromatin accessibility changes, and relationship to gene expression changes, occurring during acquisition of resistance in vivo of high grade serous ovarian cancer (HGSOC) patients and whether this associates with genomic DNA damage distribution. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627462 Series Accession: GSE149145 ID: 200149145 918. Genomic analysis of chromatin conformation and DNA damage distribution in ovarian cancer cell lines derived following acquired resistance to chemotherapy [Exo-Seq] (Submitter supplied) Changes in chromatin organization are associated with resistance to anti-cancer drugs, such as platinum-based chemotherapy used as the primary treatment of ovarian cancer. We have examined the genomic distribution of chromatin accessibility changes, and relationship to gene expression changes, occurring during acquisition of resistance in vivo of high grade serous ovarian cancer (HGSOC) patients and whether this associates with genomic DNA damage distribution. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA615870 Series Accession: GSE147645 ID: 200147645 919. The histone variant H2A.W and linker histone H1 co-regulate heterochromatin accessibility and DNA methylation (Submitter supplied) In flowering plants, heterochromatin is demarcated by the histone variant H2A.W, elevated levels of the linker histone H1, and specific epigenetic modifications, such as high levels of DNA methylation at both CG and non-CG sites. How H2A.W regulates heterochromatin organization and interacts with other heterochromatic features is unclear. Here, we create an h2a.w null mutant via CRISPR-Cas9, h2a.w-2, to analyze the in vivo function of H2A.W. more... Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing 4 related Platforms 63 Samples FTP download: GEO (BW, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146948/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA612487 Series Accession: GSE146948 ID: 200146948 920. Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Rattus norvegicus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 5 related Platforms 109 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167259/ Series Accession: GSE167259 ID: 200167259 921. Neuronal Enhancers are Hotspots for DNA Single-Strand Break Repair [ATAC-seq] (Submitter supplied) Defects in DNA repair frequently lead to neurodevelopmental and neurodegenerative diseases, underscoring the particular importance of DNA repair in long-lived post-mitotic neurons. The cellular genome is subjected to a constant barrage of endogenous DNA damage, but surprisingly little is known about the identity of the lesion(s) that accumulate in neurons and whether they accrue throughout the genome or at specific loci. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 1 Sample FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704194 Series Accession: GSE167252 ID: 200167252 922. A gain-of-function single nucleotide variant creates a new promoter which acts as an orientation-dependent enhancer-blocker (ATAC-seq) (Submitter supplied) Many SNVs associated with human traits and genetic diseases are thought to alter the activity of existing regulatory elements. Some SNVs may also create entirely new regulatory elements which change gene expression, but the mechanism by which they do so is largely unknown. Here we show that a single base change in an otherwise unremarkable region of the human alpha-globin cluster creates an entirely new promoter and an associated unidirectional transcript. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 28 Samples FTP download: GEO (BW, FA) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA670798 Series Accession: GSE159871 ID: 200159871 923. Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL16791 159 Samples FTP download: GEO (BED, TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125555/ Series Accession: GSE125555 ID: 200125555 924. Principles of Signalling Pathway Modulation for Enhancing Human Naïve Pluripotency Induction [ATAC-Seq] (Submitter supplied) Isolating human MEK/ERK signalling independent pluripotent stem cells (PSCs) with characteristics of naive pluripotency while maintaining differentiation competence and genetic integrity, remains challenging. Here we engineer reporter systems that allow screening for conditions that induce molecular and functional features of human naive pluripotency. Synergistic inhibition of WNT-ßCATENIN, PKC and SRC signalling enables induction of teratoma competent naïve human PSCs, with capacity to differentiate into trophoblast stem cells (TSC) and extraembryonic endodermal (XEN) cells in vitro. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 7 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA512840 Series Accession: GSE124614 ID: 200124614 925. Chromatin accessibility of xeno-free and feeder-cultured human extended pluripotent stem cells by ATAC-seq (Submitter supplied) Extended pluripotent stem (EPS) cells have shown great applicative potentials in generating synthetic embryos, directed differentiation and disease modeling. However, the lack of a xenofree culture condition has significantly limited their wide applications. We developed a chemically defined and xeno-free culture condition for culturing and deriving human EPS cells, which can be long-term stably propagated in vitro, as well as preserve their embryonic and extraembryonic developmental potentials. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660602 Series Accession: GSE157237 ID: 200157237 926. Microbiota are dispensable for early stages of de novo regulatory T cell induction within mesenteric lymph nodes (Submitter supplied) Intestinal Foxp3+ regulatory T cell (Treg) subsets are crucial players for tolerance towards microbiota-derived and food-borne antigens, and compelling evidence suggests that intestinal microbiota modulate their differentiation and maintenance. Selected bacterial species and microbiota-derived metabolites such as short-chain fatty acids (SCFAs) have been reported to foster Treg homeostasis in the intestinal lamina propria. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632830 Series Accession: GSE150566 ID: 200150566 927. Enhancers are Activated by p300/CBP Activity-Dependent PIC Assembly, RNAPII Recruitment and Pause Release [ATAC-Seq] (Submitter supplied) The metazoan-specific acetyltransferase p300/CBP is involved in activating signalinduced, enhancer-mediated transcription of cell-type-specific genes. However, the global kinetics and mechanisms of p300/CBP activity-dependent transcription activation remain poorly understood. We performed genome-wide, time-resolved analyses to show that enhancers and super-enhancers are dynamically activated through p300/CBP-catalyzed acetylation, deactivated by the opposing deacetylase activity, and kinetic acetylation directly contributes to maintaining cell identity at very rapid timescales. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146325/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA610086 Series Accession: GSE146325 ID: 200146325 928. Genome-wide mapping to profile histone H3-associated epigenetic marks and chromatin conformation in senescent human stromal cells (Submitter supplied) Cellular senescence, one of the major driving forces of organismal aging and age-related pathologies, is modulated by interconnected molecular changes. Combinational analysis of high-throughput 'multi-omics' datasets can provide a multi-dimensional and integrated profile of cellular senescence to unravel the heterogeneous aging process with unprecedented throughput and details. Linear chromatin is compacted into eukaryotic nucleus through a complex and multi-layered architecture. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA684911 Series Accession: GSE163105 ID: 200163105 929. Cecr2 promotes somatic cell reprogramming as a downstream target of SALL4 [ATAC-seq] (Submitter supplied) Sall4 is among one of the most important reprogramming factors. However, the underline molecular mechanisms for such importance remains unclear. In this report, we first described the gene expression and chromatin accessibility dynamics in OKS-Sall4 induced somatic cell reprogramming, and screened a group of downstream targets of Sall4, among which, cecr2, regulated by Sall4 directly, can significantly promote OKS induced reprogramming. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA616044 Series Accession: GSE147678 ID: 200147678 930. Global landscape mapping of chromatin accessibility in DNA damage-induced senescent human stromal cells (Submitter supplied) We report the application of an improved assay for transposase-accessible chromatin with high-throughput sequencing in profiling changes of chromatin openning state in senescent human stromal cells. By obtaining over four billion bases of sequence from Tn5 transposase-processed chromosome DNAs, we generated genome-wide chromatin-state maps of human primary stromal cells (with a starting cell number of 50,000). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559076 Series Accession: GSE135481 ID: 200135481 931. Identification of gene targets of mutant C/EBPα reveals a critical role for MSI2 in CEBPA-mutated AML (Submitter supplied) We mapped p30-associated regulatory elements by ATAC-seq and ChIP-seq in a myeloid progenitor cell model for p30-driven AML that enables inducible RNAi-mediated knockdown of p30. Concomitant p30-dependent changes in gene expression were measured by RNA-seq. Integrative analysis identified 117 p30-dependent regulatory elements associated with 33 strongly down-regulated genes upon p30-knockdown. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL21493 GPL17021 23 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA666385 Series Accession: GSE158727 ID: 200158727 932. Ectopic targeting of CG DNA methylation in Arabidopsis with the bacterial SssI methyltransferase. (Submitter supplied) Targeting of epigenetic marks like DNA methylation to specific loci to manipulate gene expression is important in both basic research and in crop plant engineering. However, the extent to which targeted DNA methylation can be heritable is unknown. Here, we show that targeting the CG-specific methyltransferase M.SssI (SssI) from Spiroplasma sp. strain MQ1 with an artificial zinc finger (ZF) protein can establish heritable CG methylation and silencing of the targeted loci in Arabidopsis. more... Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing 5 related Platforms 109 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663790 Series Accession: GSE158027 ID: 200158027 933. Sex-specific control of human heart maturation by the progesterone receptor [bulk_RNAseq_AAV_PGR] (Submitter supplied) The physiological adaptation of the heart to the postnatal environment is one of the most critical developmental transitions in the life of mammals. Despite in depth knowledge of the molecular mechanisms controlling embryonic heart development, little is known about the signals that govern postnatal maturation of the heart in humans. Here, we analyse the transcriptome of more than 50,000 single cells in the developing human heart from early gestation to adulthood, which enabled mapping of developmental trajectories across 7 main classes of cardiac cells over time. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL24247 13 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658802 Series Accession: GSE156706 ID: 200156706 934. Sex-specific control of human heart maturation by the progesterone receptor [bulk_RNAseq_PrKO] (Submitter supplied) The physiological adaptation of the heart to the postnatal environment is one of the most critical developmental transitions in the life of mammals. Despite in depth knowledge of the molecular mechanisms controlling embryonic heart development, little is known about the signals that govern postnatal maturation of the heart in humans. Here, we analyse the transcriptome of more than 50,000 single cells in the developing human heart from early gestation to adulthood, which enabled mapping of developmental trajectories across 7 main classes of cardiac cells over time. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL24247 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658801 Series Accession: GSE156705 ID: 200156705 935. Sex-specific control of human heart maturation by the progesterone receptor [bulk_ATACseq_human] (Submitter supplied) The physiological adaptation of the heart to the postnatal environment is one of the most critical developmental transitions in the life of mammals. Despite in depth knowledge of the molecular mechanisms controlling embryonic heart development, little is known about the signals that govern postnatal maturation of the heart in humans. Here, we analyse the transcriptome of more than 50,000 single cells in the developing human heart from early gestation to adulthood, which enabled mapping of developmental trajectories across 7 main classes of cardiac cells over time. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 27 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156704/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658798 Series Accession: GSE156704 ID: 200156704 936. Sex-specific control of human heart maturation by the progesterone receptor [snRNAseq_human] (Submitter supplied) The physiological adaptation of the heart to the postnatal environment is one of the most critical developmental transitions in the life of mammals. Despite in depth knowledge of the molecular mechanisms controlling embryonic heart development, little is known about the signals that govern postnatal maturation of the heart in humans. Here, we analyse the transcriptome of more than 50,000 single cells in the developing human heart from early gestation to adulthood, which enabled mapping of developmental trajectories across 7 main classes of cardiac cells over time. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL24676 9 Samples FTP download: GEO (TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658799 Series Accession: GSE156703 ID: 200156703 937. Sex-specific control of human heart maturation by the progesterone receptor [bulk_RNAseq_human] (Submitter supplied) The physiological adaptation of the heart to the postnatal environment is one of the most critical developmental transitions in the life of mammals. Despite in depth knowledge of the molecular mechanisms controlling embryonic heart development, little is known about the signals that govern postnatal maturation of the heart in humans. Here, we analyse the transcriptome of more than 50,000 single cells in the developing human heart from early gestation to adulthood, which enabled mapping of developmental trajectories across 7 main classes of cardiac cells over time. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 21 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658797 Series Accession: GSE156702 ID: 200156702 938. Deconvoluting global cytokine signaling networks in natural killer cells [ATAC-seq] (Submitter supplied) Cytokine signaling via signal transducer and activator of transcription (STAT) proteins is crucial for optimal antiviral responses of natural killer (NK) cells. However, the pleiotropic effects of both cytokine and STAT signaling preclude the ability to precisely attribute molecular changes to either source. In this study, we employ a multi-“omics” approach to deconstruct and rebuild the complex interaction of three major STAT signaling pathways in NK cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688918 Series Accession: GSE164113 ID: 200164113 939. Glucocorticoid signaling in pancreatic islets modulates gene regulatory programs and genetic risk of type 2 diabetes (Submitter supplied) Glucocorticoids are key regulators of glucose homeostasis and pancreatic islet function. In this study we used ATAC-seq and RNA-seq to map chromatin accessibility and gene expression from eleven primary human islet samples cultured in vitro with the glucocorticoid dexamethasone at multiple doses and durations. We identified thousands of accessible chromatin sites and genes with significant changes in activity in response to glucocorticoids. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL20301 GPL24676 36 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA703993 Series Accession: GSE167250 ID: 200167250 940. 3D Genome Analysis Identifies Enhancer Hijacking Mechanism for High-Risk Factors in Human T-Lineage Acute Lymphoblastic Leukemial (T-ALL) (Submitter supplied) The goals of this study are to determine whether alterations in the 3D genome organization are associated with the malignant transformation of T-ALL. We report integrated analyses of 3D genome alterations and differentially expressed genes (DEGs) in 18 newly diagnosed T-ALL patients and 4 healthy T cell controls. We found that 3D genome reorganization at the compartment, topologically associated domains (TAD), and loop levels in different subtypes of T-ALL. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL20795 52 Samples FTP download: GEO (BEDPE, BW, H5, HIC, TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA612465 Series Accession: GSE146901 ID: 200146901 941. Aging ISCs and Polycomb KD ISCs (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13304 GPL21306 GPL17275 61 Samples FTP download: GEO (BIGWIG, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157796/ Series Accession: GSE157796 ID: 200157796 942. Identification of age-related changes in gene expression and chromatin accessibility in T cells from thymus to periphery (60K) (Submitter supplied) Aging of immune system is characterized by progressive decline of physiological and cellular function of T cells. Recent studies of naïve T cells from young and old mice have identified age-related altered gene expressions but the mechanisms underlying age associated changes of naïve T cells remain poorly understood. Here we compared the transcriptome and chromatin accessibility in mature CD4 and CD8 thymocytes and in naïve CD4 and CD8 T cells of spleen between young (6-8 weeks) and old (79-121 weeks) C57Bl/6 mice. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL10787 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112391/ Series Accession: GSE112391 ID: 200112391 943. Identification of age-related changes in gene expression and chromatin accessibility in T cells from thymus to periphery (44K) (Submitter supplied) Aging of immune system is characterized by progressive decline of physiological and cellular function of T cells. Recent studies of naïve T cells from young and old mice have identified age-related altered gene expressions but the mechanisms underlying age associated changes of naïve T cells remain poorly understood. Here we compared the transcriptome and chromatin accessibility in mature CD4 and CD8 thymocytes and in naïve CD4 and CD8 T cells of spleen between young (6-8 weeks) and old (79-121 weeks) C57Bl/6 mice. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL11202 24 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112390/ Series Accession: GSE112390 ID: 200112390 944. Age-related changes in Pc gene regulation disrupt lineage fidelity in intestinal stem cells (Submitter supplied) Tissue homeostasis requires long-term lineage fidelity of somatic stem cells. Whether and how age-related changes in somatic stem cells impact the faithful execution of lineage decisions remains largely unknown. Here, we address this question using genome-wide chromatin accessibility and transcriptome analysis as well as single cell RNA-seq to explore stem cell-intrinsic changes in the aging Drosophila intestine. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17275 8 Samples FTP download: GEO (BIGWIG, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689843 Series Accession: GSE164317 ID: 200164317 945. Epigenetic Silencing by SETDB1 Suppresses Tumor-cell Intrinsic Immunogenicity (Submitter supplied) Epigenetic dysregulation is a defining feature of tumorigenesis and has been implicated in immune escape. However, the epigenetic mechanisms that drive immune evasion in cancer are poorly understood. To systematically identify epigenetic factors that modulate the immune sensitivity of tumor cells, we performed in vivo loss of function screens targeting 936 chromatin regulators in mouse tumor models treated with immune checkpoint blockade. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL18573 177 Samples FTP download: GEO (CSV, H5, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA656248 Series Accession: GSE155972 ID: 200155972 946. A distal Foxp3 enhancer enables interleukin-2 dependent thymic Treg cell lineage commitment for robust immune tolerance [ATAC-Seq] (Submitter supplied) STAT5 transcription factor activation downstream of the Interleukin-2 receptor (IL-2R) induces expression of Foxp3, a critical step in the differentiation of regulatory T (Treg) cells. Due to the pleiotropic outputs of IL-2R signaling, it is unclear whether STAT5 acts directly on the Foxp3 locus to promote its expression . Here, we report that IL-2 – STAT5 signaling converged on an enhancer (CNS4) during Foxp3 induction. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE169nnn/GSE169043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714957 Series Accession: GSE169043 ID: 200169043 947. SOX2 Reprograms the Esophageal Squamous Carcinoma Epigenome and Induces Endogenous Retroviral Elements and dsRNA, Thereby Promoting ADAR1 Dependence (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 86 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167367/ Series Accession: GSE167367 ID: 200167367 948. SOX2 Reprograms the Esophageal Squamous Carcinoma Epigenome and Induces Endogenous Retroviral Elements and dsRNA, Thereby Promoting ADAR1 Dependence [ChIP-Seq, ATAC-Seq] (Submitter supplied) We analyzed ChIP-seq, chromatin accessibility and RNA-seq across mouse esophageal squamous organoids and human esophageal squamous cell cancer Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 GPL15520 56 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704401 Series Accession: GSE167366 ID: 200167366 949. KDM6B-dependent chromatin remodelling underpins effective virus-specific CD8+ T cell differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL28457 GPL13112 42 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166486/ Series Accession: GSE166486 ID: 200166486 950. KDM6B-dependent chromatin remodelling underpins effective virus-specific CD8+ T cell differentiation (ATAC-Seq) (Submitter supplied) We report on the dynamic regulation of H3K27me3 demethylation during early T cell activation Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA701039 Series Accession: GSE166482 ID: 200166482 951. MED1 is a lipogenesis co-activator required for postnatal adipose expansion (Submitter supplied) MED1 often serves as a surrogate of the general transcription coactivator complex Mediator for identifying active enhancers. MED1 is required for phenotypic conversion of fibroblasts to adipocytes in vitro but its role in adipose development and expansion in vivo has not been reported. Here we show that MED1 is not generally required for transcription during adipogenesis in culture and that MED1 is dispensable for adipose development in mice. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 46 Samples FTP download: GEO (BIGWIG, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673721 Series Accession: GSE160605 ID: 200160605 952. Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 38 Samples FTP download: GEO (TAB, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168969/ Series Accession: GSE168969 ID: 200168969 953. Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics [RNA-seq] (Submitter supplied) Retinoic acid (RA) is a key signal for the specification of the pancreas. Still, the gene regulatory cascade triggered by RA in the endoderm remains poorly characterized. In this study, we investigated this regulatory network in zebrafish by combining RNA-seq, RAR ChIP-seq and ATAC-seq assays. By analysing the effect of RA and of the RA receptor (RAR) antagonist BMS439 on the transcriptome and on the chromatin accessibility of endodermal cells, we identified a large set of genes and regulatory regions regulated by RA signalling. more... Organism: Danio rerio Type: Expression profiling by high throughput sequencing Platform: GPL20828 24 Samples FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714676 Series Accession: GSE168966 ID: 200168966 954. Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics [ChIP-seq] (Submitter supplied) Retinoic acid (RA) is a key signal for the specification of the pancreas. Still, the gene regulatory cascade triggered by RA in the endoderm remains poorly characterized. In this study, we investigated this regulatory network in zebrafish by combining RNA-seq, RAR ChIP-seq and ATAC-seq assays. By analysing the effect of RA and of the RA receptor (RAR) antagonist BMS439 on the transcriptome and on the chromatin accessibility of endodermal cells, we identified a large set of genes and regulatory regions regulated by RA signalling. more... Organism: Danio rerio Type: Expression profiling by high throughput sequencing Platform: GPL20828 2 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714666 Series Accession: GSE168962 ID: 200168962 955. Identification of downstream effectors of retinoic acid specifying the zebrafish pancreas by integrative genomics [ATAC-seq] (Submitter supplied) Retinoic acid (RA) is a key signal for the specification of the pancreas. Still, the gene regulatory cascade triggered by RA in the endoderm remains poorly characterized. In this study, we investigated this regulatory network in zebrafish by combining RNA-seq, RAR ChIP-seq and ATAC-seq assays. By analysing the effect of RA and of the RA receptor (RAR) antagonist BMS439 on the transcriptome and on the chromatin accessibility of endodermal cells, we identified a large set of genes and regulatory regions regulated by RA signalling. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 12 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714663 Series Accession: GSE168960 ID: 200168960 956. H3K4 methylation buffers the effects of metabolic adaptation on replication initiation (Submitter supplied) In this study, we unravel a previously unknown function of H3K4 methylation (H3K4me; a universal marker of actively transcribed genes that also accumulates around replication origins) as a capacitor that masks the adverse effects of metabolic adaptation by facilitating initiation of replication. Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17342 20 Samples FTP download: GEO (BIGWIG, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714566 Series Accession: GSE168913 ID: 200168913 957. IRF1 governs the differential Interferon-Stimulated Gene responses in human monocytes and macrophages by regulating chromatin accessibility (ATAC - IRF1 KO THP-1) (Submitter supplied) Myeloid lineage cells use TLRs to recognize and respond to diverse microbial ligands. Although unique transcription factors dictate the outcome of specific TLR signaling, whether lineage-specific differences exist to further modulate the quality of TLR-induced inflammation remains unclear. Comprehensive analysis of global gene transcription in human monocytes, monocyte-derived macrophages and monocyte-derived dendritic cells stimulated with various TLR ligands identifies multiple lineage-specific, TLR-responsive gene programs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA613717 Series Accession: GSE147308 ID: 200147308 958. IRF1 governs the differential Interferon-Stimulated Gene responses in human monocytes and macrophages by regulating chromatin accessibility (ATAC - Time course) (Submitter supplied) Myeloid lineage cells use TLRs to recognize and respond to diverse microbial ligands. Although unique transcription factors dictate the outcome of specific TLR signaling, whether lineage-specific differences exist to further modulate the quality of TLR-induced inflammation remains unclear. Comprehensive analysis of global gene transcription in human monocytes, monocyte-derived macrophages and monocyte-derived dendritic cells stimulated with various TLR ligands identifies multiple lineage-specific, TLR-responsive gene programs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA613718 Series Accession: GSE147307 ID: 200147307 959. IRF1 governs the differential Interferon-Stimulated Gene responses in human monocytes and macrophages by regulating chromatin accessibility (ATAC - Differentiation) (Submitter supplied) Myeloid lineage cells use TLRs to recognize and respond to diverse microbial ligands. Although unique transcription factors dictate the outcome of specific TLR signaling, whether lineage-specific differences exist to further modulate the quality of TLR-induced inflammation remains unclear. Comprehensive analysis of global gene transcription in human monocytes, monocyte-derived macrophages and monocyte-derived dendritic cells stimulated with various TLR ligands identifies multiple lineage-specific, TLR-responsive gene programs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 17 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA613719 Series Accession: GSE147306 ID: 200147306 960. Creb5 establishes the competence for Prg4 expression in articular cartilage (Submitter supplied) Zhang et al. identify Creb5 as a transcription factor that is required for induction of Prg4 expression by TGFbeta and EGFR ligands. They show that Creb5 directly binds to two Prg4 promoter-proximal regulatory elements, working together with a more distal regulatory element to drive induction of Prg4 by TGFbeta. These findings provide new insight into the molecular regulation of Prg4 expression in superficial zone articular chondrocytes. Organism: Bos taurus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23055 8 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA547776 Series Accession: GSE132379 ID: 200132379 961. Interpreting type 1 diabetes risk with genetics and single cell epigenomics (Submitter supplied) Genetic risk variants identified in genome-wide association studies (GWAS) of complex disease are primarily non-coding, and translating risk variants into mechanistic insight requires detailed gene regulatory maps in disease-relevant cell types. Here, we combined a GWAS of type 1 diabetes (T1D) in 520,580 samples with candidate cis-regulatory elements (cCREs) in pancreas and peripheral blood mononuclear cell types defined using single nucleus ATAC-seq (snATAC-seq) of 131,554 nuclei. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 GPL18573 12 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA685127 Series Accession: GSE163160 ID: 200163160 962. Spear-ATAC: Pooled, droplet-based, single-cell chromatin accessibility CRISPR screens (Submitter supplied) Spear-ATAC is a modified droplet-based single-cell ATAC-seq (scATAC-seq) protocol that enables simultaneous read-out of chromatin accessibility profiles and integrated sgRNA spacer sequences from thousands of individual cells at once. Spear-ATAC profiling of 104,592 cells representing 414 sgRNA knock-down populations across three experiments revealed the temporal dynamics of epigenetic responses to regulatory perturbations in cancer cells and the associations between transcription factor binding profiles, demonstrating a high-throughput method for perturbing and evaluating dynamic single-cell epigenetic states. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL21697 38 Samples FTP download: GEO (CSV, RDS, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168851/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA714243 Series Accession: GSE168851 ID: 200168851 963. Mapping and modeling the genomic basis of differential RNA isoform expression at single-cell resolution with LR-Split-seq (Submitter supplied) The rise in throughput and quality of long-read sequencing should allow unambiguous identification of full-length transcript isoforms. However, its application to single-cell RNA-seq has been limited by throughput and expense. Here we develop and characterize long-read Split-seq (LR-Split-seq), which uses combinatorial barcoding to sequence single cells with long reads. Applied to the C2C12 myogenic system, LR-split-seq associates isoforms to cell types with relative economy and design flexibility. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL29177 GPL19057 16 Samples FTP download: GEO (CSV, GTF, H5AD, MTX, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA713904 Series Accession: GSE168776 ID: 200168776 964. Single-nucleotide-level mapping of DNA regulatory elements that control fetal hemoglobin expression (HiCHIP) (Submitter supplied) gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA713770 Series Accession: GSE168719 ID: 200168719 965. Single-nucleotide-level mapping of DNA regulatory elements that control fetal hemoglobin expression (gRNA screening) (Submitter supplied) gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements. Organism: Homo sapiens Type: Other Platform: GPL15520 4 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA713336 Series Accession: GSE168654 ID: 200168654 966. The genomic, epigenomic and biophysical cues controlling the emergence of the gas exchange niche in the lung (Submitter supplied) The lung alveolus is the functional unit of the respiratory system required for gas exchange. During the transition to air breathing at birth, biophysical forces are thought to shape the emerging tissue niche. However, the intercellular signaling that drives these processes remain poorly understood. Applying a multimodal approach, we identify alveolar type 1 (AT1) epithelial cells as a distinct signaling hub. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 10 Samples FTP download: GEO (CSV, H5, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA629119 Series Accession: GSE149563 ID: 200149563 967. Cell type-specific Chromatin Accessibility Analysis in the Mouse and Human Brain (Mouse ATAC-seq experiments) (Submitter supplied) The Assay for Transposase Accessible Chromatin by sequencing (ATAC-seq) is becoming increasing popular in the neuroscience field where chromatin regulation is thought to be involved in neurodevelopment, activity-dependent gene regulation, hormonal and environmental responses, and pathophysiology of neuropsychiatric disorders. The advantages of using this assay include a small amount of material needed, relatively simple and fast protocol, and the ability to capture a range of gene regulatory elements with a single assay. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154067/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA645059 Series Accession: GSE154067 ID: 200154067 968. Cell type-specific Chromatin Accessibility Analysis in the Mouse and Human Brain (Human ATAC-seq experiments) (Submitter supplied) The Assay for Transposase Accessible Chromatin by sequencing (ATAC-seq) is becoming increasing popular in the neuroscience field where chromatin regulation is thought to be involved in neurodevelopment, activity-dependent gene regulation, hormonal and environmental responses, and pathophysiology of neuropsychiatric disorders. The advantages of using this assay include a small amount of material needed, relatively simple and fast protocol, and the ability to capture a range of gene regulatory elements with a single assay. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 3 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154066/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA645058 Series Accession: GSE154066 ID: 200154066 969. Systematic evaluation of chromosome conformation capture assays [1D] (Submitter supplied) Chromosome conformation capture (3C)-based assays are used to map chromatin interactions genome-wide. Quantitative analyses of chromatin interaction maps can lead to insights into the spatial organization of chromosomes and the mechanisms by which they fold. A number of protocols such as in situ Hi-C and Micro-C are now widely used and these differ in key experimental parameters including cross-linking chemistry and chromatin fragmentation strategy. more... Organism: Homo sapiens Type: Other Platforms: GPL18573 GPL11154 GPL20301 22 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA698732 Series Accession: GSE165895 ID: 200165895 970. Coordination of two enhancers drives expression of olfactory trace amine-associated receptors V (Submitter supplied) Olfactory sensory neurons (OSNs) are functionally defined by their expression of a unique odorant receptor (OR). Mechanisms underlying singular OR expression are well studied, and involve a massive cross-chromosomal enhancer interaction network. Trace amine-associated receptors (TAARs) form a distinct family of olfactory receptors, and here we find that mechanisms regulating Taar gene choice display many unique features. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21273 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA687037 Series Accession: GSE163674 ID: 200163674 971. Systematic evaluation of chromosome conformation capture assays (Submitter supplied) Chromosome conformation capture (3C)-based assays are used to map chromatin interactions genome-wide. Quantitative analyses of chromatin interaction maps can lead to insights into the spatial organization of chromosomes and the mechanisms by which they fold. A number of protocols such as in situ Hi-C and Micro-C are now widely used and these differ in key experimental parameters including cross-linking chemistry and chromatin fragmentation strategy. more... Organism: Homo sapiens Type: Other Platforms: GPL20301 GPL18573 GPL11154 118 Samples FTP download: GEO (BW, MCOOL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163666/ Series Accession: GSE163666 ID: 200163666 972. Differential chromatin binding of the lung lineage transcription factor NKX2-1 resolves opposing murine alveolar cell fates in vivo [ATAC-seq] (Submitter supplied) Differential use of identical DNA sequences leads to distinct tissue lineages and then multiple cell types within a lineage, an epigenetic process central to progenitor and stem cell biology. The associated genomic changes, especially in native tissues, remain insufficiently understood, and are hereby addressed in the mouse lung, where the same lineage transcription factor NKX2-1 promotes the diametrically opposed alveolar type 1 (AT1) versus AT2 cell fate. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (BEDGRAPH, BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663783 Series Accession: GSE158024 ID: 200158024 973. Systematic analysis of innate lymphoid cells and natural killer cells in context of HIV-1 infection (Submitter supplied) We performed bulk and single cell RNA-Seq and ATAC-Seq of CD56-, CD56dim, CD56hi NK cells and innate lymphoid cells, revealed relationship among these developmental related populations, investigated the effect of HIV-1 infection on these innate populations. These findings clarify the interrelatedness of ILC populations disrupted by HIV-1 infection and provide insight into how these functions might be restored. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 14 Samples FTP download: GEO (MTX, TDF, TSV, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA706505 Series Accession: GSE168212 ID: 200168212 974. The TAZ-CAMTA1 and YAP-TFE3 fusion proteins modulate the basal TAZ/YAP transcriptional program by recruiting the Ada2a-containing histone acetyltransferase complex [RNA-seq] (Submitter supplied) The WWTR1(TAZ)-CAMTA1 and YAP1-TFE3 gene fusions are disease defining gene alterations for epithelioid hemangioendothelioma, a vascular cancer. The resultant fusion proteins fuse the C terminus of CAMTA1 and TFE3 in frame to the N terminus of TAZ and YAP, respectively. An unbiased BioID-mass spectrometry/RNAi screen identified YEATS2 and ZZZ3 as components of the Ada2a-containing histone acetyltransferase complex and key interactors of both TAZ-CAMTA1 and YAP-TFE3. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL24676 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA706445 Series Accession: GSE168205 ID: 200168205 975. Distal and proximal cis-regulatory elements sense X-dosage and developmental state at the Xist locus (Submitter supplied) Developmental genes such as Xist, the master regulator of X-chromosome inactivation (XCI), are controlled by complex cis-regulatory landscapes, which decode multiple signals to establish specific spatio-temporal expression patterns. Xist integrates information on X-chromosomal dosage and developmental stage to trigger XCI at the primed pluripotent state in females only. Through a pooled CRISPR interference screen in differentiating mouse embryonic stem cells, we identify functional enhancer elements of Xist during the onset of random XCI. more... Organism: Mus musculus; synthetic construct Type: Genome binding/occupancy profiling by high throughput sequencing 5 related Platforms 164 Samples FTP download: GEO (BW, HIC, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167358/ Series Accession: GSE167358 ID: 200167358 976. ATAC-seq in TX1072 XXΔXic and XO mESCs during differentiation (Submitter supplied) Developmental genes are controlled by complex cis-regulatory landscapes that integrate multiple signals to ensure the correct spatio-temporal expression pattern. To investigate the underlying regulatory principles, we use the Xist locus as a model, which encodes the master regulator of X-chromosome inactivation. Xist is upregulated at the primed pluripotent state in a female-specific manner, thus integrating developmental cues and X-dosage information. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704380 Series Accession: GSE167350 ID: 200167350 977. An autoimmune pleiotropic SNP modulates IRF5 alternative promoter usage through ZBTB3-mediated chromatin looping (Submitter supplied) Genetic sharing is extensively observed for many autoimmune diseases, but the causal variants and their underlying molecular mechanisms remain largely unknown. Through systematic investigation of known autoimmune disease pleiotropic loci, we found that most of these genetic effects are transmitted from regulatory code and colocalize with hematopoietic lineage-specific expression quantitative trait loci. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platform: GPL24676 14 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE168nnn/GSE168045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA705948 Series Accession: GSE168045 ID: 200168045 978. ATAC-seq and RNA-Seq of Multiple Myeloma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 46 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167969/ Series Accession: GSE167969 ID: 200167969 979. RNA-seq of Multiple Myeloma (Submitter supplied) Purpose: Multiple myeloma is a malignancy of plasma cells. Extensive genetic and transcriptional characterization of myeloma has identified subtypes with prognostic and therapeutic implications. In contrast, relatively little is known about the myeloma epigenome. Experimental Design: CD138+CD38+ myeloma cells were isolated from fresh bone marrow aspirate or the same aspirate after freezing for one to six months. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 33 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA705687 Series Accession: GSE167968 ID: 200167968 980. ATAC-seq of Multiple Myeloma (Submitter supplied) Purpose: Multiple myeloma is a malignancy of plasma cells. Extensive genetic and transcriptional characterization of myeloma has identified subtypes with prognostic and therapeutic implications. In contrast, relatively little is known about the myeloma epigenome. Experimental Design: CD138+CD38+ myeloma cells were isolated from fresh bone marrow aspirate or the same aspirate after freezing for one to six months. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 13 Samples FTP download: GEO (COV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA705686 Series Accession: GSE167967 ID: 200167967 981. PRDM16 regulates a temporal transcriptional program to promote progression of cortical neural progenitors (Submitter supplied) Radial glia (RG) in the neocortex sequentially generate distinct subtypes of projection neurons, accounting for the diversity and complex assembly of cortical neural circuits. Mechanisms that drive the rapid and precise temporal progression of RG are beginning to be elucidated. Here we reveal that the RG-specific transcriptional regulator PRDM16 promotes the transition of early to late phase of neurogenesis in the mouse neocortex. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 22 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683596 Series Accession: GSE162854 ID: 200162854 982. Prioritization of enhancer mutations by combining allele-specific chromatin accessibility with motif analysis and deep learning (Submitter supplied) Genomic sequence variation within enhancers and promoters can have a significant impact on the cellular state and phenotype. However, sifting through the millions of candidate variants in a personal genome or cancer genome, to identify only those variants that impact enhancer function, remains a major challenge. Prioritization of non-coding genome variation benefits from explainable AI to predict and interpret the impact of a mutation on gene regulation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA670968 Series Accession: GSE159965 ID: 200159965 983. GAF is essential for zygotic genome activation and chromatin accessibility in the early Drosophila embryo [ATAC-seq] (Submitter supplied) Following fertilization, the genomes of the germ cells are reprogrammed to form the totipotent embryo. Pioneer transcription factors are essential for remodeling the chromatin and driving the initial wave of zygotic gene expression. In Drosophila melanogaster, the pioneer factor Zelda is essential for development through this dramatic period of reprogramming, known as the maternal-to-zygotic transition (MZT). more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25244 12 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640380 Series Accession: GSE152771 ID: 200152771 984. Dynamic chromatin accessibility landscape changes following interleukin-1 stimulation (Submitter supplied) Genome-wide methods for examining chromatin modification provide detailed information on regulatory regions of the genome.  Dynamic modifications of chromatin allow rapid access of the gene regulatory machinery to condensed genomic regions facilitating subsequent gene expression.  Inflammatory cytokine stimulation of cells can cause rapid gene expression changes through direct signalling pathway-mediated transcription factor activation and regulatory element binding. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603332 Series Accession: GSE144303 ID: 200144303 985. Silencing of unintegrated HIV-1 by SLF2 and the SMC5/6 complex (Submitter supplied) Silencing of nuclear DNA is an essential feature of the innate immune response to invading pathogens. Early in lentiviral infection, unintegrated viral cDNA accumulates in the nucleus, yet remains poorly expressed. In HIV-1-like lentiviruses, the Vpr accessory protein enhances unintegrated viral DNA expression, suggesting Vpr antagonises cellular restriction. We previously showed how Vpr remodels the host proteome, identifying multiple cellular targets. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL22790 GPL24676 6 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658542 Series Accession: GSE156630 ID: 200156630 986. Genome-wide enhancer maps link disease variants to genes and cell types (Submitter supplied) We generated ATAC-seq and H3K27ac ChIP-seq data in immortalized immune cancer cell lines to predict enhancer-gene regulation using the ABC model. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 67 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA650287 Series Accession: GSE155555 ID: 200155555 987. The transcriptional and architectural resetting of stem cell identity during G1 entry [ATAC-Seq] (Submitter supplied) The molecular identity of dividing cells is temporarily challenged during mitosis, as transcription is halted and chromatin architecture is drastically altered. The principles and key players that ensure faithful propagation of cell identity upon G1 entry in the daughter cells remain elusive. Here, we used rapidly dividing mouse pluripotent stem cell (PSC) as a study model to characterize for the first time the dynamic transcriptional and architectural resetting of cell identity during mitotic exit, and assess the role of mitotic bookmarking by the active histone mark H3K27 acetylation (H3K27ac). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA577902 Series Accession: GSE138964 ID: 200138964 988. Role of Dot1L and H3K79 methylation in regulating somatic hypermutation of immunoglobulin genes (Submitter supplied) Somatic hypermutation (SHM) and class switch recombination (CSR) of the immunoglobulin (Ig) genes allow B cells to make antibodies that protect us against a wide variety of pathogens. SHM is mediated by activation induced deaminase (AID), occurs at a million times higher frequency than other mutations in the mammalian genome and is largely restricted to the variable (V) and switch (S) regions of Ig genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA705367 Series Accession: GSE167873 ID: 200167873 989. ATAC-sequencing data of THP-1 cells after the knockout of MSL1 (Submitter supplied) Histone acetylation is associated with open chromatin and transcriptionally active genes. Specifically, acetylation of lysine 16 on histone H4 (H4K16ac) has been shown to prevent the assembly of nucleosomal arrays in vitro. This modification is catalyzed by the MYST-family histone acetyltransferase KAT8 (also known as MOF and MYST1), which is part of two distinct chromatin-associated complexes, NSL and MSL. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA662070 Series Accession: GSE157583 ID: 200157583 990. Partial rescue of neuronal genes deregulated in CdLS by cohesin (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL16791 GPL17021 78 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150130/ Series Accession: GSE150130 ID: 200150130 991. CdLS NeuN-positive ATACseq (Submitter supplied) ATAC-seq of NeuN-positive nuclei from CdLS patients and healthy age-matched controls Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631041 Series Accession: GSE150079 ID: 200150079 992. The NK cell stress response status modulates anti-tumor immunity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 16 Samples FTP download: GEO (BED, TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167552/ Series Accession: GSE167552 ID: 200167552 993. The NK cell stress response status modulates anti-tumor immunity [scRNA-seq] (Submitter supplied) The tumor microenvironment (TME) comprises numerous forms of cellular stress, which can activate Heat Shock Factor 1 (HSF1), the master transcription factor of the proteotoxic stress response. We profiled HSF1 activity across tumor-infiltrating immune populations, revealing the highest activity in CD8+ T cells and the lowest in natural killer (NK) cells. To elucidate the mechanisms through which HSF1 regulates immune surveillance, we generated an in vivo model of augmented HSF1 activity. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL24247 2 Samples FTP download: GEO (CSV, TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704942 Series Accession: GSE167551 ID: 200167551 994. The NK cell stress response status modulates anti-tumor immunity [RNA-seq] (Submitter supplied) The tumor microenvironment (TME) comprises numerous forms of cellular stress, which can activate Heat Shock Factor 1 (HSF1), the master transcription factor of the proteotoxic stress response. We profiled HSF1 activity across tumor-infiltrating immune populations, revealing the highest activity in CD8+ T cells and the lowest in natural killer (NK) cells. To elucidate the mechanisms through which HSF1 regulates immune surveillance, we generated an in vivo model of augmented HSF1 activity. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL24247 6 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704941 Series Accession: GSE167550 ID: 200167550 995. The NK cell stress response status modulates anti-tumor immunity [ATAC-seq] (Submitter supplied) The tumor microenvironment (TME) comprises numerous forms of cellular stress, which can activate Heat Shock Factor 1 (HSF1), the master transcription factor of the proteotoxic stress response. We profiled HSF1 activity across tumor-infiltrating immune populations, revealing the highest activity in CD8+ T cells and the lowest in natural killer (NK) cells. To elucidate the mechanisms through which HSF1 regulates immune surveillance, we generated an in vivo model of augmented HSF1 activity. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704940 Series Accession: GSE167549 ID: 200167549 996. The histone reader PHF7 cooperates with the SWI/SNF complex at cardiac super-enhancers to promote direct cardiac reprogramming (Submitter supplied) Direct cardiac reprogramming of fibroblasts to cardiomyocytes presents an attractive therapeutic strategy to restore cardiac function following injury. Cardiac reprogramming was initially achieved through the overexpression of the transcription factors Gata4, Mef2c, and Tbx5 (GMT), and later, Hand2 (GHMT) and Akt1 (AGHMT) were found to further enhance this process. Yet, staunch epigenetic barriers severely limit the ability of these cocktails to reprogram adult fibroblasts. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL19057 7 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635457 Series Accession: GSE151328 ID: 200151328 997. Reorganization of 3D chromatin architecture of rice genomes during heat stress (RNA-Seq) (Submitter supplied) Background: The three-dimensional spatial organization of the genome plays important roles in chromatin accessibility and gene expression in multiple biological process, and has been reported to be altered in response to environmental stress. However, the functional changes in spatial genome organization during environmental changes in crop plants are poorly understood. Results: Here we perform Hi-C, ATAC-seq and RNA-seq in two agronomically important rice cultivars, Nipponbare (Nip; Japonica) and 93-11 (Indica), to report a comprehensive profile of nuclear dynamics during heat stress (HS). more... Organism: Oryza sativa Type: Expression profiling by high throughput sequencing Platform: GPL24468 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604026 Series Accession: GSE144566 ID: 200144566 998. Reorganization of 3D chromatin architecture of rice genomes during heat stress (HiC) (Submitter supplied) Background: The three-dimensional spatial organization of the genome plays important roles in chromatin accessibility and gene expression in multiple biological process, and has been reported to be altered in response to environmental stress. However, the functional changes in spatial genome organization during environmental changes in crop plants are poorly understood. Results: Here we perform Hi-C, ATAC-seq and RNA-seq in two agronomically important rice cultivars, Nipponbare (Nip; Japonica) and 93-11 (Indica), to report a comprehensive profile of nuclear dynamics during heat stress (HS). more... Organism: Oryza sativa Type: Other Platform: GPL24468 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604027 Series Accession: GSE144565 ID: 200144565 999. Reorganization of 3D chromatin architecture of rice genomes during heat stress (ATAC-Seq) (Submitter supplied) Background: The three-dimensional spatial organization of the genome plays important roles in chromatin accessibility and gene expression in multiple biological process, and has been reported to be altered in response to environmental stress. However, the functional changes in spatial genome organization during environmental changes in crop plants are poorly understood. Results: Here we perform Hi-C, ATAC-seq and RNA-seq in two agronomically important rice cultivars, Nipponbare (Nip; Japonica) and 93-11 (Indica), to report a comprehensive profile of nuclear dynamics during heat stress (HS). more... Organism: Oryza sativa Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24468 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604028 Series Accession: GSE144564 ID: 200144564 1000. Reorganization of 3D chromatin architecture of rice genomes during heat stress (MeDIP-Seq) (Submitter supplied) Background: The three-dimensional spatial organization of the genome plays important roles in chromatin accessibility and gene expression in multiple biological process, and has been reported to be altered in response to environmental stress. However, the functional changes in spatial genome organization during environmental changes in crop plants are poorly understood. Results: Here we perform Hi-C, ATAC-seq and RNA-seq in two agronomically important rice cultivars, Nipponbare (Nip; Japonica) and 93-11 (Indica), to report a comprehensive profile of nuclear dynamics during heat stress (HS). more... Organism: Oryza sativa Type: Methylation profiling by high throughput sequencing Platform: GPL24468 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604029 Series Accession: GSE144563 ID: 200144563 1001. Reorganization of 3D chromatin architecture of rice genomes during heat stress (Bisulfite-seq) (Submitter supplied) Background: The three-dimensional spatial organization of the genome plays important roles in chromatin accessibility and gene expression in multiple biological process, and has been reported to be altered in response to environmental stress. However, the functional changes in spatial genome organization during environmental changes in crop plants are poorly understood. Results: Here we perform Hi-C, ATAC-seq and RNA-seq in two agronomically important rice cultivars, Nipponbare (Nip; Japonica) and 93-11 (Indica), to report a comprehensive profile of nuclear dynamics during heat stress (HS). more... Organism: Oryza sativa Type: Methylation profiling by high throughput sequencing Platform: GPL24468 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604030 Series Accession: GSE144562 ID: 200144562 1002. A compendium map of Cis-Regulatory Elements in the Pig Genome and epigenetic comparison with the human Genome (Submitter supplied) Although major advances in genomics have initiated an exciting new era of research, the lack of information about cis-regulatory elements has limited the genetic improvement or manipulation of pig as meat source and biomedical model. Here, we systematically characterize the cis-regulatory elements and their functions in the pig genome in 12 diverse tissues from 4 pig breeds through RNA-Seq, ATAC-Seq, and ChIP-Seq analyses. more... Organism: Sus scrofa Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL22918 200 Samples FTP download: GEO (BED, BEDGRAPH, BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597497 Series Accession: GSE143288 ID: 200143288 1003. Transcriptomics based multi-dimensional characterization and drug screen in esophageal squamous cell carcinoma (Submitter supplied) Esophageal squamous cell carcinoma (ESCC) remains one of the most deadly cancer types worldwide. Comprehensively dissecting the molecular characterization of ESCC paves the way for developing more promising therapeutics. Here, we performed RNA-seq and ATAC-seq on three pairs of ESCC tumor tissues and patient-matched adjacent normal tissues. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 12 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704753 Series Accession: GSE167488 ID: 200167488 1004. Neural tube closure defect (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 5 Samples FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167456/ Series Accession: GSE167456 ID: 200167456 1005. Lysine Demethylase 6b (Kdm6b) is essential for proper generation of effector CD8+ T lymphocytes by inducing chromatin accessibility in effector-associated genes (Submitter supplied) The transcriptional and epigenetic regulation of CD8+ T cell differentiation is critical for balancing pathogen eradication and long-term immunity by effector and memory CTLs. Here, we demonstrate that the Lysine Demethylase 6b (Kdm6b) is essential for the proper generation and function of effector CD8+ T cells during acute infection and tumor eradication. We found that cells lacking Kdm6b (either T cell-specific KO or knockdown utilizing shRNA strategies) show an enhanced generation of memory precursor and early effector cells upon acute viral infection in a cell-intrinsic manner. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 20 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA679612 Series Accession: GSE161842 ID: 200161842 1006. In vivo CRISPR screening reveals nutrient signaling processes underpinning CD8+ T cell fate decisions [Pofut1 ATAC-seq] (Submitter supplied) The role of nutrient signaling processes in the fate decision of CD8 are incompletely understood. By performing in vivo pooled CRISPR-Cas9 screening, we uncovered nutrient signaling processes underpinning the dynamics and heterogeneity of CD8 T cell fate decisions. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672934 Series Accession: GSE160313 ID: 200160313 1007. Gata2 loss alters epigenetic priming and gene expression profiles in early myeloid and lymphoid progenitors leading to cytopenias (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24995 18 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151232/ Series Accession: GSE151232 ID: 200151232 1008. Gata2 loss alters epigenetic priming and gene expression profiles in early myeloid and lymphoid progenitors leading to cytopenias [ATAC-seq] (Submitter supplied) Germline heterozygous mutations in GATA2 are associated with a syndrome characterized by cytopenias, atypical infections, and increased risk of hematologic malignancies. Due to embryonic lethality of Gata2-/- mice, the role of germline loss of GATA2 has not been studied in adult hematopoiesis. Here, we generated a zebrafish mutant of gata2b, which in adulthood recapitulated the myelomonocytopenia and B cell lymphopenia of GATA2 syndrome. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24995 9 Samples FTP download: GEO (RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635160 Series Accession: GSE151230 ID: 200151230 1009. Neural tube closure defect: Single Cell ATAC and single cell mRNA seq (Submitter supplied) Single-cell mRNA sequencing was overlaid with single-cell ATAC sequencing of the mouse E9.5 cranial region for both wildtype and miR-302 knockout embryos, an established example of a neural tube closure defect. The goals of this study were to compare changes in gene expression and chromatin accessibility upon loss of a stem cell miRNA and neural tube closure defect. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BED, MTX, RDS, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704678 Series Accession: GSE167454 ID: 200167454 1010. Nascent RNA sequencing defines dynamic aryl hydrocarbon receptor signaling responses to wood smoke particles [PRO-seq] (Submitter supplied) Transcriptional responses to wildfire smoke, an increasingly important cause of human morbidity, are poorly understood. Here, using a combination of precision nuclear run-on sequencing (PRO-seq) and the assay for transposase-accessible chromatin using sequencing (ATAC-seq), we identify rapid and dynamic changes in transcription and chromatin structure in Beas-2B airway epithelial cells after exposure to wood smoke particles (WSP). more... Organism: Homo sapiens Type: Other; Expression profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704407 Series Accession: GSE167371 ID: 200167371 1011. Nascent RNA sequencing defines dynamic aryl hydrocarbon receptor signaling responses to wood smoke particles [ATAC-seq] (Submitter supplied) Transcriptional responses to wildfire smoke, an increasingly important cause of human morbidity, are poorly understood. Here, using a combination of precision nuclear run-on sequencing (PRO-seq) and the assay for transposase-accessible chromatin using sequencing (ATAC-seq), we identify rapid and dynamic changes in transcription and chromatin structure in Beas-2B airway epithelial cells after exposure to wood smoke particles (WSP). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167370/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704406 Series Accession: GSE167370 ID: 200167370 1012. Chromatin accessibility dictates specific transcriptional response by different cells of the innate immune system (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL21697 152 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147314/ Series Accession: GSE147314 ID: 200147314 1013. The Tec kinase ITK optimizes differential NFAT, NF-κB, and Erk1/2 signaling to regulate graded gene induction in mouse CD8+ T cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 79 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167304/ Series Accession: GSE167304 ID: 200167304 1014. The Tec kinase ITK optimizes differential NFAT, NF-κB, and Erk1/2 signaling to regulate graded gene induction in mouse CD8+ T cells [ATAC-seq] (Submitter supplied) In this study we generated ATAC-seq libraries from mouse CD8+ OT-I T cells that were stimulated with WT splenocytes loaded with OVA peptide or OVA peptide variants, with or without presence of ITK inhibitor PRN-694 at early time points (0, 30min, 60min, or 120min). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 32 Samples FTP download: GEO (BED, RDATA, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704175 Series Accession: GSE167302 ID: 200167302 1015. ATAC-seq in HUDEP-2 cells (Submitter supplied) ATAC-seq was performed in HUDEP-2 cells grown in expansion phase medium following the OMNI-ATAC protocol (Corces MR, et al. Nat. Methods, 2017). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 3 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE167nnn/GSE167298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA704100 Series Accession: GSE167298 ID: 200167298 1016. Depletion of H3K36me2 recapitulates epigenomic and phenotypic changes induced by the H3.3K36M oncohistone mutation (Submitter supplied) In this study, our results support a functional divergence between H3K36me2 and H3K36me3 and their non-redundant roles in H3K36M-driven oncogenesis Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing 4 related Platforms 35 Samples FTP download: GEO (BW, CSV, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672721 Series Accession: GSE160266 ID: 200160266 1017. Single nucleus multi-omics regulatory atlas of the murine pituitary [single nuclei ATAC-Seq] (Submitter supplied) The pituitary regulates growth, reproduction and other endocrine systems. To investigate transcriptional network epigenetic mechanisms in this gland, we generated paired single nucleus (sn) transcriptome and chromatin accessibility profiles in single mouse pituitaries, and genome-wide sn methylation datasets. Our analysis provided insight into cell type epigenetics, regulatory circuit and gene control mechanisms. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 9 Samples FTP download: GEO (CSV, H5, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637896 Series Accession: GSE151960 ID: 200151960 1018. Epigenetic and chromatin profiling of wild-type and Dnmt3a-deficient B1 and B2 B cells. (RNA) (Submitter supplied) We have comprehensively interrogated wild type B1 and B2 B lineage cells and their progenitors. In mice bearing a conditional deletion of Dnmt3a in the B lineage, we integrated a variety of whole-genome profiling approaches including WGBS, TAB-Seq, RNA-seq, ATAC-Seq and CUT&RUN. The results reveal a stable “foundational methylome” in all B cells that establishes lymphocyte lineage identity. Superimposed on this foundational methylome is a “dynamic methylome” which is differentially modulated in B1 and B2 B cells by the coincident activity/recruitment of DNMT3A and TET enzymes. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632587 Series Accession: GSE150496 ID: 200150496 1019. Epigenetic and chromatin profiling of wild-type and Dnmt3a-deficient B1 and B2 B cells. (CUT&RUN) (Submitter supplied) We have comprehensively interrogated wild type B1 and B2 B lineage cells and their progenitors. In mice bearing a conditional deletion of Dnmt3a in the B lineage, we integrated a variety of whole-genome profiling approaches including WGBS, TAB-Seq, RNA-seq, ATAC-Seq and CUT&RUN. The results reveal a stable “foundational methylome” in all B cells that establishes lymphocyte lineage identity. Superimposed on this foundational methylome is a “dynamic methylome” which is differentially modulated in B1 and B2 B cells by the coincident activity/recruitment of DNMT3A and TET enzymes. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 61 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632586 Series Accession: GSE150495 ID: 200150495 1020. Epigenetic and chromatin profiling of wild-type and Dnmt3a-deficient B1 and B2 B cells. (methylation) (Submitter supplied) We have comprehensively interrogated wild type B1 and B2 B lineage cells and their progenitors. In mice bearing a conditional deletion of Dnmt3a in the B lineage, we integrated a variety of whole-genome profiling approaches including WGBS, TAB-Seq, RNA-seq, ATAC-Seq and CUT&RUN. The results reveal a stable “foundational methylome” in all B cells that establishes lymphocyte lineage identity. Superimposed on this foundational methylome is a “dynamic methylome” which is differentially modulated in B1 and B2 B cells by the coincident activity/recruitment of DNMT3A and TET enzymes. Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632585 Series Accession: GSE150494 ID: 200150494 1021. The Role of nuclear protein DEK in hematopoietic stem cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 22 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166434/ Series Accession: GSE166434 ID: 200166434 1022. ATAC Sequencing Facilitates the Role of Nuclear Protein DEK in Regulating Chromatin Accessibility of Hematopoietic Stem Cells [ATAC-seq] (Submitter supplied) Purpose:To identify genes involved in the DEK regulating chromatin accessibility of hematopoietic stem cells (HSC) in mice, we performed ATAC-Sequence of HSC freshly sorted from mice. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA700962 Series Accession: GSE166432 ID: 200166432 1023. SUGAR-Seq enables simultaneous detection of glycans, epitopes and the transcriptome in single cells [ATAC-seq] (Submitter supplied) Multi-modal single cell RNA sequencing enables the precise mapping of transcriptional and phenotypic features of cellular differentiation states, but does not allow for simultaneous integration of critical post-translational modification data. Here, we describe SUrface-protein Glycan And RNA-seq (SUGAR-seq); a method that enables detection and analysis of N-linked glycosylation, extracellular epitopes and the transcriptome at the single cell level. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166324/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA700453 Series Accession: GSE166324 ID: 200166324 1024. Overarching control of autophagy and DNA damage response by CHD6 revealed by modeling a rare human pathology [ATAC-Seq] (Submitter supplied) Members of the chromodomain-helicase-DNA binding (CHD) protein family are chromatin remodelers critically implicated in human pathologies, with CHD6 being one of its least studied members. Here, we discovered a de novo CHD6 missense mutation in a patient clinically presenting the rare Hallermann-Streiff syndrome (HSS). We used genome editing to generate isogenic iPSC lines and model HSS in relevant cell types. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675611 Series Accession: GSE161118 ID: 200161118 1025. ATAC-seq on parental and acquired resistant cells (AqR) (Submitter supplied) Parental and AqR cells were obtained. DNA was purified and submited for sequencing. Differential chromatin accessiblity was observed. AqR cells were derived from parental cells by adding inhibitor (CAY10566) every 3 days until cells became resistant (at about 3 weeks). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540849 Series Accession: GSE130638 ID: 200130638 1026. IL-7R signalling activates widespread VH and DH gene usage to drive antibody diversity in bone marrow B cells (Submitter supplied) Generation of the primary antibody repertoire requires V(D)J recombination of hundreds of gene segments in the immunoglobulin heavy chain (Igh) locus. It has been proposed that interleukin-7 receptor (IL-7R) signalling is necessary for Igh recombination, but this has been challenging to partition from the receptor’s role in B cell survival and proliferation. By generating the first detailed description of the Igh repertoire of murine IL-7Ra-/- bone marrow B cells, we demonstrate that IL-7R signalling profoundly influences VH gene selection during VH-to-DJH recombination. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17021 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA662113 Series Accession: GSE157603 ID: 200157603 1027. Chip-seq, ATAC-seq, and RNA-seq of murine P14 T cells WT or FOXO1 KO, responding in vivo to LCMV-ARM (Submitter supplied) P14 CD8+ murine T cells were adoptively transferred to C57BL/6 hosts and infected with LCMV-ARM. At indicated times post-infection (see sample name), P14 T cells of the indicated cell-surface phenotype were isolated and sujectected to ChIP-seq, RNA-seq or ATAC-seq. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 18 Samples FTP download: GEO (BEDGRAPH, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA687259 Series Accession: GSE163723 ID: 200163723 1028. Kmt2c-mutations superimpose properties of activated and quiescent HSCs to convey a selective advantage after chemotherapy [ATAC-seq] (Submitter supplied) ATAC-seq analysis of wild type and Kmt2c mutant hematopoietic progenitors Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 18 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA664184 Series Accession: GSE158158 ID: 200158158 1029. Yap regulates fatty acid oxidation in skeletal muscle (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 12 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144138/ Series Accession: GSE144138 ID: 200144138 1030. Yap regulates fatty acid oxidation in skeletal muscle [ATAC-seq] (Submitter supplied) The Hippo signalling pathway effector Yap positively regulates adult skeletal muscle mass. However, the biological processes that are modulated by Yap in skeletal muscle remain elusive. Using an integrated transcriptomics and proteomics approach, we define the transcriptional programme regulated by Yap in adult skeletal muscle and demonstrate that Yap is a regulator of metabolic substrate utilisation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA602873 Series Accession: GSE144137 ID: 200144137 1031. Epigenetic therapy strengthens immune synapses to potentiate susceptibility of lung cancer cells to adoptive γδ T cell therapy [seq] (Submitter supplied) Purpose: Epigenetic drug DNA methyltransferase inhibitors (DNMTis) are immunomodulating agents that may sensitize cancer cells to immune cell attack. However, it is still unclear how DNMTi affects cancer cells to the killing by immune cells. We therefore try to uncover the alternations of genomic DNA methylation, chromatin accessibility and transcriptomes after DNMTi treatment of cancer cells. Methods: Six human lung cancer cell lines (A549, H1299, CL1-0, CL1-5, H1792, PC9) treated without (Mock) or with 100 nM decitabine (DAC) for 72 hours followed by growing in drug-free medium for three days were subjected to mRNA-seq and Omni-ATAC-seq analyses. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 20 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607909 Series Accession: GSE145663 ID: 200145663 1032. A genetic map of the murine dorsal vagal complex and its role in obesity [single-cell RNA-seq and ATAC-seq] (Submitter supplied) The brainstem dorsal vagal complex (DVC) is known to regulate energy balance and is the target of appetite suppressing hormones, such as glucagon-like peptide-1 (GLP-1). Here we provide a comprehensive genetic map of the DVC and identify neuronal populations that control feeding. Combining bulk and single-nucleus gene expression and chromatin profiling of DVC cells, we reveal 25 neuronal populations with unique transcriptional and chromatin accessibility landscapes and peptide receptor expression profiles. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 35 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA701477 Series Accession: GSE166648 ID: 200166648 1033. Comparative Chromatin Dynamics and Expression Profiles of Neural Progenitor and Definitive Endoderm Lineage Differentiation in Two Mammalian Species (Submitter supplied) One of the fundamental questions in developmental biology is how lineage specification is regulated and what regulatory transcription factors and signaling molecules are required. Lineage specification and differentiation are driven, at least in part, by chromatin remodeling causing changes in the accessibility of transcription factor binding sites. Changes in expression of required transcription factors are also important in the regulation of differentiation. more... Organism: Rattus norvegicus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20084 GPL18573 118 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164361/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA690114 Series Accession: GSE164361 ID: 200164361 1034. Different p53 status controls resistance to 5-fluorouracil via distinct chromatin accessibility dynamics in human colorectal cancer cell line (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL16791 26 Samples FTP download: GEO (BED, BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158021/ Series Accession: GSE158021 ID: 200158021 1035. p53 influences 5-FU-induced chromatin accessibility [ChIP-seq] (Submitter supplied) 5-Fluorouracil (5-FU) is one of the most common drugs used in chemotherapy because of its efficacy and stability. However, 5-FU has been known to work on only 10~15% of colon cancer patients. Therefore, the study of 5-FU sensitivity study is necessary to increase the survival of colon cancer patients. p53 is one of the factors that effect on drug sensitivity. Main function of p53 has been focused on transcription activity in cell death. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663473 Series Accession: GSE157950 ID: 200157950 1036. p53 influences 5-FU-induced chromatin accessibility [ATAC-seq] (Submitter supplied) 5-Fluorouracil (5-FU) is one of the most common drugs used in chemotherapy because of its efficacy and stability. However, 5-FU has been known to work on only 10~15% of colon cancer patients. Therefore, the study of 5-FU sensitivity study is necessary to increase the survival of colon cancer patients. p53 is one of the factors that effect on drug sensitivity. Main function of p53 has been focused on transcription activity in cell death. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663471 Series Accession: GSE157949 ID: 200157949 1037. Single cell Cut&Tag in the mouse brain (Submitter supplied) We performed single cell Cut&Tag using 10x genomics chromium platform with antibodies agains H3K4me3, H3K27ac, H3K27me3, H3K36me3, Rad21 and Olig2 on nuclei isolated from the mouse brain. The cells were sorted based on GFP fluorescence, from Sox10-Cre/GFP whole mouse brain at postnatal day P21-25. Additionaly, H3K4m3 and H3K27me3 scC&T includes both Sox10-Cre/GFP positive and negative cells sorted from the whole mouse brain at postnatal day P15. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 17 Samples FTP download: GEO (BW, H5, RDS, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA662308 Series Accession: GSE157637 ID: 200157637 1038. Tumor methionine metabolites reprograms chromatin accessibilities of CD8+ T cells linking to T cell dysfunction. (Submitter supplied) T-cell exhaustion denotes a hypofunctional state of T lymphocytes commonly found in cancer, but how tumor cells drive T-cell exhaustion remains elusive. We found oncogenic reprograming of HCC methionine recycling with elevated 5-methylthioadenosine (MTA) and S-adenosylmethionine (SAM) to be tightly linked to T-cell exhaustion. We used an assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) to assay the genome-wide chromatin accessibility of T cells during activation and SAM/MTA treatment. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE166nnn/GSE166213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA699597 Series Accession: GSE166213 ID: 200166213 1039. DNA hypomethylating agents increase activation and cytolytic activity of CD8+ T-cells (Submitter supplied) DNA hypomethylating agents (HMAs) induce Type I/III interferon signaling through dsRNA-mediated viral mimicry in cancer cells. Yet, the direct effects of HMAs in immune cells remains less clear. Here, we demonstrate that HMA treatments can directly modulate the anti-tumor response and effector function of CD8+ T-cells. In vivo HMA treatment promotes CD8+ T-cell tumor infiltration and supresses tumor growth via CD8+ T-cell dependent activity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 9 Samples FTP download: GEO (NARROWPEAK, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637641 Series Accession: GSE151917 ID: 200151917 1040. Swapping the DNA binding domain of MeCP2 with that of MBD2 to abolish binding to non-CG methlyation results in RTT-like phenotypes in mice [ATAC-seq] (Submitter supplied) Mutations in the MECP2 gene cause the profound neurological disorder Rett syndrome. MeCP2 protein is an epigenetic reader that recruits the NCOR1/2 corepressor complexes to methylated cytosine in its canonical CG setting, but also to methylated CA motifs, which are abundant in neurons but rare in other cell types. In this study we set out to test the biological significance of this non-canonical mode of DNA binding. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637507 Series Accession: GSE151859 ID: 200151859 1041. Decoding Cortical Glial Cell Development (Submitter supplied) Mouse cortical radial glial cells (RGCs) are primary neural stem cells that give rise to cortical oligodendrocytes, astrocytes, and olfactory bulb (OB) GABAergic interneurons in late embryogenesis. There are fundamental gaps in understanding how these diverse cell subtypes are generated. Here, by combining single-cell RNA-Seq with intersectional lineage analyses, we show that beginning at around E16.5, neocortical RGCs start to generate ASCL1+EGFR+ apical multipotent intermediate progenitors (MIPCs), which then differentiate into basal MIPCs that express ASCL1, EGFR, OLIG2, and MKI67. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 2 Samples FTP download: GEO (CSV, H5, MTX, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675630 Series Accession: GSE161132 ID: 200161132 1042. Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL11154 GPL20301 GPL15520 45 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157311/ Series Accession: GSE157311 ID: 200157311 1043. Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression (ATAC-Seq) (Submitter supplied) gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660806 Series Accession: GSE157310 ID: 200157310 1044. Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression (RNA-Seq) (Submitter supplied) gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660807 Series Accession: GSE157309 ID: 200157309 1045. Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression (histone ChIP-Seq) (Submitter supplied) gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660804 Series Accession: GSE157308 ID: 200157308 1046. Single-nucleotide–level mapping of DNA regulatory elements that control fetal hemoglobin expression (TF ChIP-Seq) (Submitter supplied) gRNA screening for HbF+ and HbF- samples were performed to identify candidate cis-regulatory elements. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660805 Series Accession: GSE157307 ID: 200157307 1047. Analysis of chromatin accessibility in adult mouse pituitary using single-cell ATAC-seq (Submitter supplied) To gain insight into patterns of chromatin accessibility in distinct cell subtypes of mouse pituitary, pituitaries from two adult mice were collected and subjected to single-cell ATAC-seq analysis using 10X Genomics platform Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 2 Samples FTP download: GEO (H5, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158070/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663883 Series Accession: GSE158070 ID: 200158070 1048. Enhancers predominantly control transcription initiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other Platforms: GPL18573 GPL19057 45 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138359/ Series Accession: GSE138359 ID: 200138359 1049. Enhancers predominantly control transcription initiation [ATAC-seq] (Submitter supplied) Gene transcription occurs via a cycle of linked events including initiation, promoter proximal pausing and elongation of RNA polymerase II (Pol 2). A key question is how do transcriptional enhancers influence these events to control gene expression? Here we have used a new approach to quantify transcriptional initiation and pausing in-vivo, while simultaneously identifying transcription start sites (TSSs) and pause-sites (TPSs). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138357/ Series Accession: GSE138357 ID: 200138357 1050. De novo assembly, annotation, and comparative analysis of 26 diverse maize genomes (Submitter supplied) We report de novo genome assemblies, transcriptomes, annotations, and methylomes for the 26 maize inbreds that serve as the founders for the maize nested association mapping population. The data indicate that the number of pan-genes in maize exceeds 103,000 and that the ancient tetraploid character of maize continues to degrade by fractionation to the present day. Excellent contiguity over repeat arrays and complete annotation of centromeres further revealed the locations and internal structures of major cytological landmarks. more... Organism: Zea mays Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25410 104 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA697943 Series Accession: GSE165787 ID: 200165787 1051. NASH pathogenesis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 22 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164085/ Series Accession: GSE164085 ID: 200164085 1052. Genome-wide open chromatin analysis of liver sinusoidal endothelial cells in the pathogenesis of NASH (Submitter supplied) We isolated liver sinusoidal endothelial cells (LSEC) from mice fed control chow (Chow) or the nonalcoholic steatohepatitis (NASH)-inducing high fat, fructose and cholesterol (FFC) diet, and subjected the cells to Omni-ATAC-seq. Out of the top 500 differentially abundant open chromatin regions between the two groups, 498 were more robust in FFC-fed mice compared with Chow-fed mice, suggesting a genome-wide active epigenetic regulation in LSEC during NASH development. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA688504 Series Accession: GSE164008 ID: 200164008 1053. Increased fitness of pancreatic cancer cells Adapted to nutrient deprivation (Submitter supplied) Pancreatic cancer cells adapted to low nutrient conditions share common transcriptional programs that correlate with alterations in open chromatin states. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL20301 GPL24676 24 Samples FTP download: GEO (BW, TXT, VCF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605101 Series Accession: GSE144833 ID: 200144833 1054. The H2BE76K mutation drives breast cancer development by enhancing the transcription of ADAM19 (Submitter supplied) Study was conducted to understand the effect of the cancer associated H2BE76K mutation. Using CRISPR/Cas9 Knock-in cell lines expressing FLAG-tagged WT and E76K mutant H2B, we conducted gene expression profiling experiments and studied the effect of the H2BE76K mutation on H2B occupancy using CUT&RUN sequencing. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL20795 27 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132749/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548915 Series Accession: GSE132749 ID: 200132749 1055. Sequential CRISPR gene editing in human iPSCs charts the clonal evolution of leukemia (Submitter supplied) Human cancers arise through an evolutionary process whereby cells acquire somatic mutations that drive them to outgrow normal cells and create successive clonal populations. “Bottom-up” human cancer evolution models could help illuminate this process, but their creation has faced significant challenges. Here we combined human induced pluripotent stem cell (iPSC) and CRISPR/Cas9 technologies to develop a model of the clonal evolution of acute myeloid leukemia (AML). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 26 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594644 Series Accession: GSE163034 ID: 200163034 1056. Single cell RNA-seq and machine learning reveal novel subpopulations and regulatory sequences in low-grade inflammatory monocytes (Submitter supplied) We report the application of single-cell RNA sequencing(scRNA-seq) in mouse monocyte cells by integrating scRNA-seq, transcriptionfactor binding motifs, and ATAC-seq data using machine learning. We generated scRNA-seqdata from mouse monocytes treated with PBS, SD-LPS, 4-PBA, and SD-LPS + 4-PBA tounderstand the gene regulatory networks of monocytes under the low-grade inflammatorycondition and the mechanism of action for 4-PBA. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673218 Series Accession: GSE160450 ID: 200160450 1057. INTACT vs. FANS for cell-type-specific nuclei isolation: A comprehensive qualitative and quantitative comparison (Submitter supplied) In this study we used transgenic mouse model to comapre two isolation techniques INTACT and FANS for the isolation of activated neuronal nuclei. Comparison is perfomed on multiple levels like isolation efficiency, membrane integrity, transcriptional and epigenetic state using RNA-seq and ATAC-seq Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing Platform: GPL19057 39 Samples FTP download: GEO (TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA695261 Series Accession: GSE165644 ID: 200165644 1058. A unique histone 3 lysine 14 chromatin signature underlies tissue-specific gene regulation (Submitter supplied) Organismal development and cell differentiation critically depend on chromatin state transitions. The in vivo functions of individual histone modifications, however, remain incompletely understood. Whereas acetylation of histone 3 lysines 9 and 27 (H3K9ac and H3K27ac) and methylation of H3K4 are common in transcriptionally active genes, certain developmentally regulated genes lack these modifications. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL22106 32 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA628075 Series Accession: GSE149343 ID: 200149343 1059. Effects of genetic variation on gene expression revealed following hypoxic stress in cardiomyocytes [ATAC-seq] (Submitter supplied) The predominant outcome of cardiovascular disease (CVD) is myocardial infarction (MI), where cardiomyocytes are deprived of oxygen. To study inter-individual differences in cardiomyocytes’ response to hypoxia, we established an in vitro model of induced pluripotent stem cell-derived cardiomyocytes from 15 individuals. We characterized gene expression levels, chromatin accessibility, and methylation profiles in these cardiomyocytes in four culturing conditions that correspond to normoxia (10% O2), hypoxia (1% O2) and short or long-term re-oxygenation (back to 10% O2). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 56 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603597 Series Accession: GSE144423 ID: 200144423 1060. ELF3 activated by a super-enhancer and an autoregulatory feedback loop is required for high level HLA-C expression on extravillous trophoblasts (Submitter supplied) HLA-C arose during evolution of pregnancy in the Great Apes 10-15 million years ago. It has a dual function on placental extravillous trophoblasts (EVT) as it contributes to both tolerance and immunity at the maternal-fetal interface. The mode of its regulation is of considerable interest in connection with the biology of pregnancy and pregnancy abnormalities. First trimester primary EVT in which HLA-C is highly expressed, as well as JEG3, an EVT model cell lines, were employed. Single cell RNA-seq data and quantitative PCR identified high expression of the transcription factor ELF3 in those cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 5 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA694844 Series Accession: GSE165511 ID: 200165511 1061. Bi-fated tendon-to-bone attachment cells are regulated by shared enhancers and KLF transcription factors (Submitter supplied) "The connection between different tissues is vital for the development and function of all organs and systems. In the musculoskeletal system, the attachment of elastic tendons to stiff bones poses a mechanical challenge that is solved by the formation of a transitional tissue, which allows the transfer of muscle forces to the skeleton without tearing. Here, we show that tendon-to-bone attachment cells are bi-fated, activating a mixture of chondrocyte and tenocyte transcriptomes, which is regulated by sharing regulatory elements with these cells and by Krüppel-like factors transcription factors (KLF). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 20 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603341 Series Accession: GSE144306 ID: 200144306 1062. Single-cell ATAC-Seq of Adult GBM surgical specimens (Submitter supplied) We performed scATAC-seq on primary glioblastoma tissue samples taken at time of initial resection to map the global chromatin profiles of glioblastoma cells and associated non-neoplastic cells Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA578617 Series Accession: GSE139136 ID: 200139136 1063. HOXBLINC is aberrantly expressed in acute myeloid leukemia and functions as a potent oncogenic long non-coding RNA in leukemogenesis (Submitter supplied) Dysregulation of HOXA/B genes is a dominant mechanism of leukemic transformation.HOXB locus-associated long non-coding RNA (lncRNAs), HOXBLINC, regulates transcription of the anterior HOXB genes and plays a critical role in hematopoiesis development. Here, we show that HOXBLINC lncRNA is up-regulated in over 60% of patients with AML. Interestingly, AML patients with high HOXBLINC expression have a significantly shortened survival as compared to low HOXBLINC expressing patients. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 5 related Platforms 40 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473783 Series Accession: GSE115096 ID: 200115096 1064. Transcriptome and Chromatin Landscape of iNKT cells are Shaped by Subset Differentiation and Antigen Exposure [ATAC-seq] (Submitter supplied) Invariant natural killer T cells (iNKT cells) differentiate into thymic NKT1, NKT2 and NKT17 subsets that are also peripheral. We determined if the gene programs associated with these thymic subsets were maintained in peripheral sites, the influence of tissue location, and if there were large-scale changes after antigen exposure. RNA-seq and ATAC-seq analyses showed that iNKT cells in any subset were similar, regardless of tissue location. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 53 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678445 Series Accession: GSE161491 ID: 200161491 1065. A Machine-learning approach to define and predict the therapeutic landscape of pan-cancer Hippo pathway dependency (ATAC-seq) (Submitter supplied) One challenge of cancer precision medicine is the heterogeneity of genetic and non-genetic alterations that result in dysfunctional molecular pathways. As an emerging drug discovery effort, dysregulation in Hippo pathway signaling is known to drive oncogenesis across numerous cancer types but lacks recurrent mutation(s) that are often found in other canonical signaling pathways. Here, we use first principles approach to develop a machine-learning framework to identify a robust, lineage-independent gene expression signature to quantify Hippo pathway dependency in cancers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675182 Series Accession: GSE161018 ID: 200161018 1066. Transcriptome and Chromatin Landscape of iNKT Cells are Shaped by Subset Differentiation and Antigen Exposure [RNA-seq] (Submitter supplied) Invariant natural killer T cells (iNKT cells) differentiate into thymic NKT1, NKT2 and NKT17 subsets that are also peripheral. We determined if the gene programs associated with these thymic subsets were maintained in peripheral sites, the influence of tissue location, and if there were large-scale changes after antigen exposure. RNA-seq and ATAC-seq analyses showed that iNKT cells in any subset were similar, regardless of tissue location. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL17021 GPL24247 118 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157225/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660465 Series Accession: GSE157225 ID: 200157225 1067. Epigenetic reprogramming events rewire transcription during the alternation of generations in Arabidopsis [ATAC-Seq] (Submitter supplied) Alternation between morphologically distinct haploid and diploid life forms is a defining feature of most plant and algal life cycles, yet the underlying molecular mechanisms that govern these transitions remain unclear. Here, we explore the dynamic relationship between chromatin accessibility and epigenetic modifications during life form transitions in Arabidopsis. The diploid-to-haploid life form transition is governed by the loss of H3K9me2 and DNA demethylation of transposon-associated cis-regulatory elements, which is associated with dramatic changes in chromatin accessibility and transcriptional reprogramming. more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17639 10 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA649438 Series Accession: GSE155344 ID: 200155344 1068. Regulatory regions of MCF10A before and after H-RAS transformation [ATAC-seq] (Submitter supplied) Gene transcription is substantially regulated by distant regulatory elements via combinatorial binding of transcription factors. It is more and more recognized that alterations in chromatin state and transcription factor binding in these distant regulatory elements may have key roles in cancer development. Here we focused on the first stages of oncogene induced carcinogenic transformation, and characterized the regulatory network underlying transcriptional reprogramming associated with this process. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589054 Series Accession: GSE140251 ID: 200140251 1069. The corepressors GPS2 and SMRT control enhancer and silencer function linked to eRNA transcription during inflammatory activation of macrophages (Submitter supplied) Study the inflammation-associated Ccl2 functional enhancer and its related enhancer RNA in mice macrophages Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platforms: GPL21626 GPL13112 247 Samples FTP download: GEO (BEDGRAPH, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA539984 Series Accession: GSE130383 ID: 200130383 1070. Epigenetic and Transcriptional profiling of Influenza-specific memory B cells (Submitter supplied) This study aimed to characterize the chromatin accessibility and transcriptional differences between influenza-specific murine memory B cells and naive B cells. Memory B cells were subdivided into those that expressed either an IgM or IgG B cell receptor (BCR). Using B cell tetramers, we FACS isolated influenza-specific cells 35 days post-PR8 infection and performed ATAC-seq and RNA-seq. This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164173/ Series Accession: GSE164173 ID: 200164173 1071. Influenza-specific Memory B cell ATAC seq (Submitter supplied) To determine the differences in chromatin accessibility between antigen-experienced memory B cells and naïve B cells, we isolated influenza-specific memory B cells expressing either IgG or IgM BCR and compared the chromatin accessibility landscape to naive B cells using ATAC-seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689419 Series Accession: GSE164171 ID: 200164171 1072. Two promoter types induce tissue-specific effector genes in the late Drosophila embryo [scRNA-Seq] (Submitter supplied) TATA box-containing promoters are often associated with tissue-specific effector genes, genes that are important for the structure and function of differentiated tissues. The underlying reason for this promoter preference is unclear, in part because tissue-specific genes have not been studied as widely as genes that drive embryonic development. To fill this gap in knowledge, we performed single-cell RNA-seq on differentiated cells derived from the late Drosophila embryo, identified the various tissues and analyzed the relationship between promoter types and gene expression across tissues. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing Platform: GPL13304 2 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491743 Series Accession: GSE120156 ID: 200120156 1073. Two promoter types induce tissue-specific effector genes in the late Drosophila embryo [RNA-Seq] (Submitter supplied) TATA box-containing promoters are often associated with tissue-specific effector genes, genes that are important for the structure and function of differentiated tissues. The underlying reason for this promoter preference is unclear, in part because tissue-specific genes have not been studied as widely as genes that drive embryonic development. To fill this gap in knowledge, we performed single-cell RNA-seq on differentiated cells derived from the late Drosophila embryo, identified the various tissues and analyzed the relationship between promoter types and gene expression across tissues. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing Platforms: GPL13304 GPL19132 11 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491742 Series Accession: GSE120155 ID: 200120155 1074. Two promoter types induce tissue-specific effector genes in the late Drosophila embryo [Mnase-Seq] (Submitter supplied) TATA box-containing promoters are often associated with tissue-specific effector genes, genes that are important for the structure and function of differentiated tissues. The underlying reason for this promoter preference is unclear, in part because tissue-specific genes have not been studied as widely as genes that drive embryonic development. To fill this gap in knowledge, we performed single-cell RNA-seq on differentiated cells derived from the late Drosophila embryo, identified the various tissues and analyzed the relationship between promoter types and gene expression across tissues. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491741 Series Accession: GSE120154 ID: 200120154 1075. Two promoter types induce tissue-specific effector genes in the late Drosophila embryo [ChIP-Seq - INTACT] (Submitter supplied) TATA box-containing promoters are often associated with tissue-specific effector genes, genes that are important for the structure and function of differentiated tissues. The underlying reason for this promoter preference is unclear, in part because tissue-specific genes have not been studied as widely as genes that drive embryonic development. To fill this gap in knowledge, we performed single-cell RNA-seq on differentiated cells derived from the late Drosophila embryo, identified the various tissues and analyzed the relationship between promoter types and gene expression across tissues. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13304 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491740 Series Accession: GSE120153 ID: 200120153 1076. Two promoter types induce tissue-specific effector genes in the late Drosophila embryo [ChIP-Seq] (Submitter supplied) TATA box-containing promoters are often associated with tissue-specific effector genes, genes that are important for the structure and function of differentiated tissues. The underlying reason for this promoter preference is unclear, in part because tissue-specific genes have not been studied as widely as genes that drive embryonic development. To fill this gap in knowledge, we performed single-cell RNA-seq on differentiated cells derived from the late Drosophila embryo, identified the various tissues and analyzed the relationship between promoter types and gene expression across tissues. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19132 GPL13304 11 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491739 Series Accession: GSE120152 ID: 200120152 1077. Two promoter types induce tissue-specific effector genes in the late Drosophila embryo [ATAC-Seq - INTACT] (Submitter supplied) TATA box-containing promoters are often associated with tissue-specific effector genes, genes that are important for the structure and function of differentiated tissues. The underlying reason for this promoter preference is unclear, in part because tissue-specific genes have not been studied as widely as genes that drive embryonic development. To fill this gap in knowledge, we performed single-cell RNA-seq on differentiated cells derived from the late Drosophila embryo, identified the various tissues and analyzed the relationship between promoter types and gene expression across tissues. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13304 GPL19132 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491738 Series Accession: GSE120151 ID: 200120151 1078. Two promoter types induce tissue-specific effector genes in the late Drosophila embryo [ATAC-Seq] (Submitter supplied) TATA box-containing promoters are often associated with tissue-specific effector genes, genes that are important for the structure and function of differentiated tissues. The underlying reason for this promoter preference is unclear, in part because tissue-specific genes have not been studied as widely as genes that drive embryonic development. To fill this gap in knowledge, we performed single-cell RNA-seq on differentiated cells derived from the late Drosophila embryo, identified the various tissues and analyzed the relationship between promoter types and gene expression across tissues. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491737 Series Accession: GSE120150 ID: 200120150 1079. Two promoter types induce tissue-specific effector genes in the late Drosophila embryo (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13304 GPL19132 63 Samples FTP download: GEO (BW, H5, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120157/ Series Accession: GSE120157 ID: 200120157 1080. Fruitless decommissions regulatory elements to implement cell-type-specific neuronal masculinization [ATAC-seq] (Submitter supplied) Chromatin accessibility of neurons comprising most of the central brain courtship circuit in adult male Drosophila brains, with sex and cell-type control populations. Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 8 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA669853 Series Accession: GSE159600 ID: 200159600 1081. RNA-seq, ATAC-seq and Hi-C profiles of B cells and naïve and activated T cells from human peripheral blood (Submitter supplied) Mature B cells, CD4+ T cells and CD8+ T cells were isolated from the peripheral blood of two human donors. Naive CD4+ and CD8+ T cells were cultured for three days to induce activation. The B cells and naive and activated T cells were profiled by RNA-seq, ATAC-seq and Hi-C. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 24 Samples FTP download: GEO (MTX, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126117/ Series Accession: GSE126117 ID: 200126117 1082. ATAC-seq profiles of B cells and naive and activated T cells from human peripheral blood (Submitter supplied) Mature B cells, CD4+ T cells and CD8+ T cells were isolated from the peripheral blood of two human donors. Naive CD4+ and CD8+ T cells were cultured for three days in the presence of Dynabeads Human T-Activator CD3/CD28 beads (Life Technologies, cat. no. 111.31D) to induce activation. The B cells and naive and activated T cells were profiled by ATAC-seq to determine chromatin accessibility. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 10 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521045 Series Accession: GSE126113 ID: 200126113 1083. cinaR: A comprehensive R package for the differential analyses and interpretation of ATAC-seq data (Submitter supplied) ATAC-seq is a frequently used assay to study chromatin accessibility levels. Differential chromatin accessibility level analyses between biological groups and functional interpretation of these differential regions are essential in ATAC-seq data analyses. Although distinct methods and analyses pipelines are developed for this purpose, we are missing a stand-along R package that combines state-of-the art differential analyses and functional enrichment analyses. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA693296 Series Accession: GSE165120 ID: 200165120 1084. Protein prenylation drives discrete signaling programs for the differentiation and maintenance of effector Treg cells [Pggt1b_ATACseq] (Submitter supplied) An interplay between immune signals, isoprenoids-mediated protein prenylation, and intracellular signaling for the differentiation and maintenance of eTreg cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667026 Series Accession: GSE158921 ID: 200158921 1085. Protein prenylation drives discrete signaling programs for the differentiation and maintenance of effector Treg cells [Fntb_ATACseq] (Submitter supplied) An interplay between immune signals, isoprenoids-mediated protein prenylation, and intracellular signaling for the differentiation and maintenance of eTreg cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667029 Series Accession: GSE158920 ID: 200158920 1086. Single Cell Analysis of Chromatin Accessibility Reveals Genetic and Regulatory Heterogeneity in Glioblastomas (Submitter supplied) Intra-tumoral heterogeneity is a key contributor to therapeutic failure in glioblastomas, the most common form of primary adult brain cancer. To better define this heterogeneity, genome-wide chromatin accessibility and transcription profiles of clinical glioblastoma specimens were analyzed at single cell resolution. These profiles afforded resolution of intra-tumoral genetic heterogeneity and delineation of sub-populations characterized by focal DNA amplifications including extrachromosomal circular DNA (ecDNA) that harbor highly transcribed oncogenes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE165nnn/GSE165037/ Series Accession: GSE165037 ID: 200165037 1087. Uncovering the Gene Regulatory Networks Underlying Macrophage Polarization Through Comparative Analysis of Bulk and Single-Cell Data (Submitter supplied) Gene regulatory networks (GRNs) provide a powerful framework for studying cellular differentiation. However, it is less clear how GRNs encode cellular responses to everyday microenvironmental cues. Macrophages can be polarized and potentially repolarized based on environmental signaling. In order to identify the GRNs that drive macrophage polarization and the heterogeneous single-cell subpopulations that are present in the process, we used a high-resolution time course of bulk and single-cell RNA-seq and ATAC-seq assays of HL-60-derived macrophages polarized towards M1 or M2 over 24 hours. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 80 Samples FTP download: GEO (BED, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA690953 Series Accession: GSE164498 ID: 200164498 1088. Genome-wide Binding Potential and Regulatory Activity of the Glucocorticoid Receptor’s Monomeric and Dimeric Forms (Submitter supplied) A widely regarded model for glucocorticoid receptor (GR) action postulates that dimeric binding to DNA regulates unfavorable metabolic pathways while monomeric receptor binding promotes repressive gene responses related to its anti-inflammatory effects. This model has been built upon the characterization of the GRdim mutant, reported to be incapable of DNA binding and dimerization. Although quantitative live-cell imaging data shows GRdim as mostly dimeric, genomic studies, on the basis of recovery of enriched half-site response elements, suggest monomeric engagement on DNA. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21103 GPL17021 44 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA482932 Series Accession: GSE117661 ID: 200117661 1089. BAF subunit switching regulates chromatin accessibility to control cell cycle exit in the developing mammalian cortex [ATAC-seq] (Submitter supplied) mSWI/SNF or BAF chromatin regulatory complexes are dosage-sensitive regulators of human neural development frequently mutated in autism and intellectual disability. Cell cycle exit and differentiation of neural stem/progenitor cells is accompanied by BAF subunit switching to generate neuron-specific nBAF complexes. We manipulated the timing of BAF subunit exchange in vivo and found that early loss of the npBAF subunit BAF53a stalls cell cycle exit to disrupt neurogenesis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692734 Series Accession: GSE164989 ID: 200164989 1090. Dynamic CTCF occupancy during differentiation rewires cis-regulatory module interactions essential for development [ATAC-seq] (Submitter supplied) The ubiquitously expressed transcription factor CTCF maintains higher-order chromatin structure in multiple cell types and species through well-established common mechanisms. Here we define a new role for CTCF in tissue-specific gene regulation revealed by serial examinations of genome-wide CTCF occupancy during red blood cell (RBC) differentiation of human CD34+ hematopoietic stem/progenitor cells (HSPCs). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542481 Series Accession: GSE131053 ID: 200131053 1091. Transient “rest” induces functional reinvigoration and epigenetic remodeling in exhausted CAR-T cells Mediate Enhanced Antitumor Activity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL23227 GPL20301 96 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164950/ Series Accession: GSE164950 ID: 200164950 1092. Transient “rest” induces functional reinvigoration and epigenetic remodeling in exhausted CAR-T cells Mediate Enhanced Antitumor Activity [ATAC-seq, ChIP-seq] (Submitter supplied) T cell exhaustion limits immune responses against cancer and is a major cause of resistance to CAR-T cell therapeutics. Using a model wherein tonic CAR signaling induces hallmark features of exhaustion, we employed a drug-regulatable CAR to test the impact of transient cessation of receptor signaling (i.e. “rest”) on the development and maintenance of exhaustion. Induction of rest in exhausting or already-exhausted CAR-T cells resulted in acquisition of a memory-like phenotype, improved anti-tumor functionality, and wholescale transcriptional and epigenetic reprogramming. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 27 Samples FTP download: GEO (RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692499 Series Accession: GSE164947 ID: 200164947 1093. Transient “rest” induces functional reinvigoration and epigenetic remodeling in exhausted CAR-T cells Mediate Enhanced Antitumor Activity [ATAC-seq] (Submitter supplied) T cell exhaustion limits immune responses against cancer and is a major cause of resistance to CAR-T cell therapeutics. Using a model wherein tonic CAR signaling induces hallmark features of exhaustion, we employed a drug-regulatable CAR to test the impact of transient cessation of receptor signaling (i.e. “rest”) on the development and maintenance of exhaustion. Induction of rest in exhausting or already-exhausted CAR-T cells resulted in acquisition of a memory-like phenotype, improved anti-tumor functionality, and wholescale transcriptional and epigenetic reprogramming. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 36 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692498 Series Accession: GSE164946 ID: 200164946 1094. Biological constraints on GWAS SNPs at suggestive significance thresholds reveal true BMI loci [hMSC_adipocytes_captureC] (Submitter supplied) We investigated whether intersecting functional genomic data (ATAC-seq + promoter focused Capture C) with increasingly powered publically available GWAS for Body Mass Index and Waist to Hip Ratio could identify additional true postiive subsignficant signals (5x10-8< P value < 5x10-4) without increasing the GWAS sample size Organism: Homo sapiens Type: Other Platform: GPL24676 3 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692438 Series Accession: GSE164911 ID: 200164911 1095. Biological constraints on GWAS SNPs at suggestive significance thresholds reveal true BMI loci [hMSC_adipocytes_atacseq] (Submitter supplied) We investigated whether intersecting functional genomic data (ATAC-seq + promoter focused Capture C) with increasingly powered publically available GWAS for Body Mass Index and Waist to Hip Ratio could identify additional true postiive subsignficant signals (5x10-8< P value < 5x10-4) without increasing the GWAS sample size Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 3 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA691887 Series Accession: GSE164745 ID: 200164745 1096. Intrachromosomal interactions across the intestinal crypt-villus axis and the imapct on chromatin looping upon HNF4 loss (Submitter supplied) This study provides a map of enhancer-promoter interactions in the intestinal epithelium. We find that key drivers of intestinal differentiation, HNF4 transcription factors, are required for enhancer-promoter interactions at their direct target genes. Depletion of HNF4 disrupts chromatin looping, nearby enhancer chromatin, and target gene expression. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL9250 18 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625437 Series Accession: GSE148691 ID: 200148691 1097. Spatially mapped single-cell chromatin accessibility (Submitter supplied) sciMAP-ATAC as a technology to produce single-cell ATAC-seq data with cells mapped to spatially-defined regions. Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 5 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA692203 Series Accession: GSE164849 ID: 200164849 1098. ATAC-seq of squamous cell carcinoma cells varying in FAK status (Submitter supplied) Focal adhesion kinase (FAK) localizes to focal adhesions and is overexpressed in many cancers. FAK can also translocate to the nucleus, where it binds to, and regulates, several transcription factors, including MBD2, p53 and IL-33, to control gene expression by unknown mechanisms. We have used ATAC-seq to reveal that FAK controls chromatin accessibility at a subset of regulated genes. Integration of ATAC-seq and RNA-seq data showed that FAK-dependent chromatin accessibility is linked to differential gene expression, including of the FAK-regulated cytokine and transcriptional regulator interleukin-33 (Il33), which controls anti-tumor immunity. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675122 Series Accession: GSE161022 ID: 200161022 1099. A Multi-Omics Approach to Epstein-Barr Virus (EBV) Immortalization of B-Cells Reveals Viral-Induced Changes in Chromatin Accessibility and Nucleotide Metabolism (Submitter supplied) Epstein-Barr Virus (EBV) immortalizes resting B-lymphocytes through a highly orchestrated process involving extensive reprogramming of host transcription and metabolism. Here, we use multiple omics-based approaches concurrently across the time course of B-cell infection to investigate the underlying mechanisms that control EBV-induced B-cell immortalization. ATAC-seq revealed that over a third of accessible chromatin is altered with the most perturbed sites overlapping Ets-family, including PU.1 and RUNX1 transcription factors. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18573 16 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA649441 Series Accession: GSE155345 ID: 200155345 1100. Conserved pleiotropy of an ancient plant homeobox gene uncovered by cis-regulatory dissection (Submitter supplied) Divergence of gene function is a hallmark of evolution, but assessing functional divergence over deep time is not trivial. The few alleles available for cross-species studies often fail to expose the entire functional spectrum of genes, potentially obscuring deeply conserved pleiotropic roles. Here, we explore the functional divergence of WUSCHEL HOMEOBOX9 (WOX9), suggested to have species-specific roles in embryo and inflorescence development. more... Organism: Solanum lycopersicum Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20585 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689817 Series Accession: GSE164297 ID: 200164297 1101. Single-cell chromatin accessibility identifies pancreatic islet cell type– and state-specific regulatory programs of diabetes risk [snATAC-seq] (Submitter supplied) Single-nucleus assay for transposase-accessible chromatin using sequencing (snATAC-seq) creates new opportunities to dissect cell type–specific mechanisms of complex diseases. Since pancreatic islets are central to type 2 diabetes (T2D), we profiled 15,298 islet cells by using combinatorial barcoding snATAC-seq and identified 12 clusters, including multiple alpha, beta and delta cell states. We cataloged 228,873 accessible chromatin sites and identified transcription factors underlying lineage- and state-specific regulation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL18573 5 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673284 Series Accession: GSE160472 ID: 200160472 1102. Changes in chromatin accessibility landscape induced by Hnf4a in PDAC [ATAC-seq] (Submitter supplied) Pancreatic ductal adenocarcinoma is aggressive disease with a dismal five-year survival of 5%. Gene expression profiling has been instrumental for subtype classification in cancer, highlighting fundamental differences in tumors at the molecular level. Over the last years, multiple genomics studies have led to the classification of PDAC into two major subtypes: classical and basal-type. The classical subtype expresses higher levels of endodermal lineage specifiers, including HNF4A, GATA6, FOXA2, FOXA3 than the basal-type. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138451/ Series Accession: GSE138451 ID: 200138451 1103. Elucidation of the open chromatin regions in the bronchial lymph nodes of dairy calves experimentally challenged with bovine respiratory syncytial virus, using ATAC-Seq (Submitter supplied) Bovine Respiratory Syncytial Virus (BRSV) is a cause of Bovine Respiratory Disease (BRD). The objective of this study was to elucidate the chromatin regions which were differentially open in the bronchial lymph nodes (BLN) of dairy calves experimentally challenged with BRSV, relative to unchallenged control calves. Holstein-Friesian calves were either challenged with BRSV inoculum (n=12) or mock challenged with PBS (n=6). more... Organism: Bos taurus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23055 18 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622966 Series Accession: GSE148056 ID: 200148056 1104. LT-HSC from middle-age mice stimulated with IGF1 ATAC-seq (Submitter supplied) Long-term hematopoietic stem cells (LT-HSCs) are responsible for lifelong maintenance and regeneration of the blood system. Loss of LT-HSC function is a major contributor to decline in hematopoietic function with aging, leading to increased rate of infection, poor vaccination response, and increased risk of hematologic malignancies. While cellular and molecular hallmarks of LT-HSC aging have been defined, a barrier to achieving the goal of extending healthy hematopoietic function into older age is the lack of understanding of the nature and timing of the initiating events that cause LT-HSC aging. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA691328 Series Accession: GSE164609 ID: 200164609 1105. JNK1 Signaling Downstream of the EGFR Pathway Contributes to Imiquimod-induced Skin Inflammation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL24247 10 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164581/ Series Accession: GSE164581 ID: 200164581 1106. JNK1 Signaling Downstream of the EGFR Pathway Contributes to Imiquimod-induced Skin Inflammation (ATAC-seq) (Submitter supplied) c-Jun N-terminal protein kinase 1 (JNK1) is involved in multiple biological processes but its implication in inflammatory skin diseases is still poorly defined. Herein, we studied the role of JNK1 in the context of imiquimod-induced skin inflammation. We observed that constitutive ablation of JNK1 reduced imiquimod-induced acanthosis and expression of inflammatory markers. Conditional deletion of JNK1 in myeloid cells led to reduced skin inflammation, a finding that was associated with impaired Aldara®-induced inflammasome activation in vitro. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 4 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA691245 Series Accession: GSE164579 ID: 200164579 1107. AtacWorks: A deep convolutional neural network toolkit for epigenomics (Submitter supplied) We introduce AtacWorks (https://github.com/clara-genomics/AtacWorks), a method to denoise and identify accessible chromatin regions from low-coverage or low-quality ATAC-seq data. AtacWorks uses a deep neural network to learn a mapping between noisy ATAC-seq data and corresponding higher-coverage or higher-quality data. We apply this approach to as few as 50 hematopoietic stem cells to identify regulatory elements that are differentially-accessible between rare lineage-primed cell subpopulations. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA613046 Series Accession: GSE147113 ID: 200147113 1108. Stimulation of functional neuronal regeneration from Müller glia in adult mice (Submitter supplied) Many retinal diseases lead to the loss of retinal neurons and cause visual impairment. The adult mammalian retina has little capacity for regeneration. By contrast, teleost fish functionally regenerate their retina following injury, and Müller glia (MG) are the source of regenerated neurons. The proneural transcription factor Ascl1 is upregulated in MG after retinal damage in zebrafish and is necessary for regeneration. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388810 Series Accession: GSE164489 ID: 200164489 1109. SUMOylation regulates the protein network and chromatin accessibility at glucocorticoid receptor-binding sites [sequencing] (Submitter supplied) Glucocorticoid receptor (GR) is an essential transcription factor (TF), controlling metabolism, development and immune responses. SUMOylation regulates chromatin occupancy and target gene expression of GR in a locus-selective manner, but the mechanism of regulation has remained elusive. Here, we identify the protein network around chromatin-bound GR by using selective isolation of chromatin-associated proteins and show that the network is affected by receptor SUMOylation, with several nuclear receptor coregulators and chromatin modifiers preferring interaction with SUMOylation-deficient GR and proteins implicated in transcriptional repression preferring interaction with SUMOylation-competent GR. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL11154 GPL18573 81 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE64nnn/GSE64301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA270853 Series Accession: GSE64301 ID: 200064301 1110. Interplay of BAF and MLL4 promotes enhancer activation (Submitter supplied) Cell type-specific enhancers are activated by coordinated actions of lineage-determining transcription factors (LDTFs) and chromatin regulators. The SWI/SNF complex BAF and the histone H3K4 methyltransferase MLL4 (KMT2D) are both implicated in enhancer activation. However, the interplay between BAF and MLL4 in enhancer activation remains unclear. Using adipogenesis as a model system, we identify BAF as the major SWI/SNF complex that colocalizes with LDTFs and MLL4 on active enhancers during cell differentiation. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL17021 101 Samples FTP download: GEO (BIGWIG, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA634764 Series Accession: GSE151115 ID: 200151115 1111. Primarily cultured neurospheres (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21273 GPL13112 19 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143178/ Series Accession: GSE143178 ID: 200143178 1112. ATAC-seq from primarily cultured neurospheres from FGF13cko and control mice (Submitter supplied) To identify the changes of chromatin structure in neural progenitors upon Fgf13 depletion, we compared the chromatin accessibility of primarily cultured hippocampal neurosphere from neonatal FGF13cko (hGAFPCre+;Fgf13 flox/y) mice and litermate control (hGAFPCre+;Fgf13 +/y) mice by ATAC-seq analysis. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 4 Samples FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA599145 Series Accession: GSE143172 ID: 200143172 1113. Genome-wide profiles of gene expression levels in mouse nephron progenitor cells (Submitter supplied) During embryonic kidney development, nephron progenitor cells (NPCs) self-renew and differentiate into all cells in mature nephrons. The Wnt signaling components Wnt9b and β-catenin are required for both NPC self-renewal and differentiation. A low level of Wnt/β-catenin are associated with NPC self-renewal while a high level with differentiation. To investigate the transcriptional mechanisms behind Wnt/β-catenin-driven regulation of NPCs states, we modeled NPC self-renewal and differentiation in vitro with NPEM (Brown et al., 2015) supplemented with low (1.25 μM) or high (5 μM) concentration of CHIR22091 (CHIR), a small molecule GSK3β inhibitor that stabilizes β-catenin. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 15 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542681 Series Accession: GSE131118 ID: 200131118 1114. Genome-wide map of open chromatin in mouse nephron progenitor cells (Submitter supplied) During embryonic kidney development, nephron progenitor cells (NPCs) self-renew and differentiate into all cells in mature nephrons. The Wnt signaling components Wnt9b and β-catenin are required for both NPC self-renewal and differentiation. A low level of Wnt/β-catenin are associated with NPC self-renewal while a high level with differentiation. To investigate the transcriptional mechanisms behind Wnt/β-catenin-driven regulation of NPCs states, we modeled NPC self-renewal and differentiation in vitro with NPEM (Brown et al., 2015) supplemented with low (1.25 μM) or high (5 μM) concentration of CHIR22091 (CHIR), a small molecule GSK3β inhibitor that stabilizes β-catenin. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 15 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542683 Series Accession: GSE131116 ID: 200131116 1115. Integration of Alzheimer's disease genetics and myeloid genomics identifies disease risk regulatory elements and genes [ATAC-seq] (Submitter supplied) Genome-wide association studies (GWAS) have identified more than 40 loci associated with Alzheimer’s disease (AD), but the causal variants, regulatory elements, genes and pathways remain largely unknown, impeding a mechanistic understanding of AD pathogenesis. Previously, we showed that AD risk alleles are enriched in myeloid-specific epigenomic annotations. Here, we show that they are specifically enriched in active enhancers of monocytes, macrophages and microglia. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689842 Series Accession: GSE164314 ID: 200164314 1116. Chromatin Accessibility Maps Provide Evidence of Multilineage Gene Priming in Hematopoietic Stem Cells (Submitter supplied) Hematopoietic stem cells (HSCs) have the capacity to differentiate into vastly different types of mature blood cells. The epigenetic mechanisms regulating the multilineage ability, or multipotency of HSCs are not well understood. To test the hypothesis that cis regulatory elements that control fate decisions for all lineages are primed in HSCs, we used ATAC-seq to compare chromatin accessibility of HSCs with five unipotent cell types. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683898 Series Accession: GSE162949 ID: 200162949 1117. NEUROD1 intrinsically initiates differentiation of induced pluripotent stem cells into neural progenitor cells (Submitter supplied) We generated ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) data and Hi-C data for induced pluripotent stem cell (iPSC), neuronal progentior cell (NPC), and investigated cell type-specific open chromatin regions and related enhancers Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other Platforms: GPL24676 GPL20301 GPL16791 24 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA665048 Series Accession: GSE158382 ID: 200158382 1118. Profiling of melocular mechanism of SOX17 effect during hematopoieisis of human ES cells (Submitter supplied) Here, using SOX17-knockout and SOX17-inducible human PSCs, paired with cell biology and molecular profiling studies, we revealed that SOX17 represents a critical upstream factor that is required for activation and linkage of HOXA and arterial programs in hemogenic endothelium and establishing definitive lympho-myeloid hematopoiesis. These SOX17 effects are mediated through activation of NOTCH, CDX2 and retinoic acid signaling. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21290 GPL18573 12 Samples FTP download: GEO (BED, BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140341/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589309 Series Accession: GSE140341 ID: 200140341 1119. Open chromatin and transcriptome analysis of iPSCs differentiated into lung epithelium at air-liquid interface reveals key transcriptional drivers and processes (RNA-seq data) (Submitter supplied) The availability of robust protocols to differentiate induced pluripotent stem cells (iPSCs) into many human cell lineages has transformed research into the origins of human disease. The efficacy of differentiating iPSCs into specific cellular models is influenced by many factors including both intrinsic and extrinsic features. Among the most challenging models is the generation of human bronchial epithelium at air-liquid interface (HBE-ALI), which is the gold standard for many studies of respiratory diseases including cystic fibrosis. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA563878 Series Accession: GSE136858 ID: 200136858 1120. Open chromatin and transcriptome analysis of iPSCs differentiated into lung epithelium at air-liquid interface reveals key transcriptional drivers and processes (ATAC-seq data) (Submitter supplied) The availability of robust protocols to differentiate induced pluripotent stem cells (iPSCs) into many human cell lineages has transformed research into the origins of human disease.  The efficacy of differentiating iPSCs into specific cellular models is influenced by many factors including both intrinsic and extrinsic features.  Among the most challenging models is the generation of human bronchial epithelium at air-liquid interface (HBE-ALI), which is the gold standard for many studies of respiratory diseases including cystic fibrosis.  Here we perform open chromatin mapping by ATAC-seq and transcriptomics by RNA-seq in parallel, to define the functional genomics of key stages of the definitive endoderm (DE) to HBE-ALI differentiation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA563877 Series Accession: GSE136857 ID: 200136857 1121. CD4+ T cells From Children With Active Juvenile Idiopathic Arthritis Show Altered Chromatin Features Associated With Transcriptional Abnormalities (ATAC-seq) (Submitter supplied) We used a multi-omics approach in an attempt to identify mechanisms driving the transcriptional abnormalities in peripheral blood CD4+ T cells of children with active JIA. We demonstrate that active JIA is associated with distinct alterations in CD4+ T cell chromatin, as assessed by ATAC-seq studies. However, 3D chromatin architecture, assessed by HiChIP and simultaneous mapping of CTCF anchors of chromatin loops, reveals that normal 3D chromatin architecture is largely preserved in JIA CD4+ T cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 16 Samples FTP download: GEO (BED, GAPPEDPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689566 Series Accession: GSE164214 ID: 200164214 1122. CD4+ T cells From Children With Active Juvenile Idiopathic Arthritis Show Altered Chromatin Features Associated With Transcriptional Abnormalities (RNA-seq) (Submitter supplied) We used a multi-omics approach in an attempt to identify mechanisms driving the transcriptional abnormalities in peripheral blood CD4+ T cells of children with active JIA. We demonstrate that active JIA is associated with distinct alterations in CD4+ T cell chromatin, as assessed by ATAC-seq studies. However, 3D chromatin architecture, assessed by HiChIP and simultaneous mapping of CTCF anchors of chromatin loops, reveals that normal 3D chromatin architecture is largely preserved in JIA CD4+ T cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 32 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689564 Series Accession: GSE164213 ID: 200164213 1123. CD4+ T cells From Children With Active Juvenile Idiopathic Arthritis Show Altered Chromatin Features Associated With Transcriptional Abnormalities (ChIP-seq) (Submitter supplied) We used a multi-omics approach in an attempt to identify mechanisms driving the transcriptional abnormalities in peripheral blood CD4+ T cells of children with active JIA. We demonstrate that active JIA is associated with distinct alterations in CD4+ T cell chromatin, as assessed by ATAC-seq studies. However, 3D chromatin architecture, assessed by HiChIP and simultaneous mapping of CTCF anchors of chromatin loops, reveals that normal 3D chromatin architecture is largely preserved in JIA CD4+ T cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 22 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689565 Series Accession: GSE164212 ID: 200164212 1124. Evolution of conserved noncoding sequences (CNS) in Arabidopsis thaliana (Submitter supplied) We report ATAC-seq for several A. thaliana accessions in healthy leaf tissue. As part of an investigation into the evolution of conserved noncoding sequences, our goal was to identify overlaps between regions of accessible chromatin and CNS. Manuscript in review. Biorxiv preprint doi: https://doi.org/10.1101/727669 Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19580 96 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE164nnn/GSE164159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA689309 Series Accession: GSE164159 ID: 200164159 1125. Subtype-associated epigenomic landscape and 3D genome structure in bladder cancer (Submitter supplied) Muscle-invasive bladder cancers are characterized by their distinct expression of luminal and basal genes, which could be used to predict key clinical features such as disease progression and overall survival. Transcriptionally, FOXA1, GATA3, and PPARg are shown to be essential for luminal subtype-specific gene regulation and subtype switching, while TP63, STAT3 and TFAP2 family members are critical for regulation of basal subtype-specific genes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL9052 51 Samples FTP download: GEO (MCOOL, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623018 Series Accession: GSE148079 ID: 200148079 1126. Stepwise chromatin and transcriptional acquisition of an intraepithelial lymphocyte program (Submitter supplied) Mesenteric lymph node (mLN) T cells undergo tissue adaptation upon migrating to intestinal lamina propria (LP) and intraepithelial (IE) compartments, ensuring appropriate balance between tolerance and resistance. By combining mouse genetics with single-cell and chromatin analyses, we addressed the molecular imprinting of gut epithelium on T cells. Transcriptionally, conventional and regulatory (Treg) CD4+ T cells from mLN, LP and IE segregate based on the gut layer they occupy; trajectory analysis suggests a stepwise loss of CD4-programming and acquisition of an intraepithelial profile. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 GPL21626 40 Samples FTP download: GEO (BB, BED, BIGWIG, H5, MTX, NARROWPEAK, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA610060 Series Accession: GSE146292 ID: 200146292 1127. Cardiac endothelial cells maintain open chromatin and expression of cardiomyocyte myofibrillar genes (Submitter supplied) Endothelial cells (ECs) are widely heterogenous depending on tissue and vascular localization. Jambusaria et al. recently demonstrated that ECs in various tissues surprisingly possess mRNA signatures of their underlying parenchyma. The mechanism underlying this observation remains unexplained, and could include mRNA contamination during cell isolation, in vivo mRNA paracrine transfer from parenchymal cells to ECs, or cell-autonomous expression of these mRNAs in ECs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL21626 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605116 Series Accession: GSE144839 ID: 200144839 1128. The chromatin accessibility of circulating CD8+ T cells predicts immune-therapeutic response of PD-1 blockade in gastric cancer (Submitter supplied) We hypothesized that there are distinct signatures in chromatin of circulating CD8+ T cells depending on their response to anti-PD-1 therapy due to their long-term interaction with the internal stimuli, such as with tumor and its microenvironment, and external stimuli, such as with infectious diseases. To identify unique chromatin regions predicting the clinical outcome of PD-1 therapy, we performed an assay for transposase-accessible chromatin sequencing (ATAC-seq) using blood samples of patients enrolled in PD-1 therapy. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 32 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597748 Series Accession: GSE142604 ID: 200142604 1129. Comprehensive analysis of single cell ATAC-seq data with SnapATAC (Submitter supplied) Identification of the cis-regulatory elements controlling cell-type specific gene expression patterns is essential for understanding the origin of cellular diversity. Conventional assays to map regulatory elements via open chromatin analysis of primary tissues is hindered by sample heterogeneity. Single cell analysis of accessible chromatin (scATAC-seq) can overcome this limitation. However, the high-level noise of each single cell profile and the large volumes of data pose unique computational challenges. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (HDF5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523117 Series Accession: GSE126724 ID: 200126724 1130. Role of SWI/SNF-Related, Matrix Associated, Actin Dependent Regulator of Chromatin A4 (SMARCA4) core complex in epithelial innate response (ATAC-seq) (Submitter supplied) We examine the epigenetic role of the SWI/SNF Related, Matrix Associated, Actin Dependent Regulator of Chromatin A4 (SMARCA4) in the epithelial response to RSV infection. Wild type and SMARCA4 silenced cells were subjected to ATAC-seq in the absence or presence of RSV infection. Cells were infected for 0 or 24 h prior to RNA seq. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA679614 Series Accession: GSE161847 ID: 200161847 1131. Treg Cell TGF-β1 Regulates Distinct Checkpoints Governing Allergy and Autoimmunity (Submitter supplied) The mechanisms by which regulatory T (Treg) cells differentially control allergic and autoimmune responses remain unclear. We show that Treg cells in food allergy (FA) have decreased expression of transforming growth factor beta 1 (TGF-b1) due to IL-4 and STAT6-dependent inhibition of Tgfb1 transcription. These changes were modelled by Treg cell-specific Tgfb1 monoallelic inactivation, which induced allergic dysregulation by impairing microbiota-dependent ROR-gt+ Treg cell differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA666622 Series Accession: GSE158804 ID: 200158804 1132. ATF3 drives senescence by reconstructing accessible chromatin profiles (Submitter supplied) We depicted the landscapes of both chromatin accessibility and gene expression to reveal gene regulatory networks in human umbilical vein endothelial cell (HUVEC) senescence and found that chromatin accessibilities are re-distributed during senescence. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL20795 12 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663096 Series Accession: GSE157867 ID: 200157867 1133. NFκB dynamics determine the stimulus-specificity of epigenomic reprogramming in macrophages (Submitter supplied) The epigenome defines the cell type, but also possesses plasticity to tune gene expression in the context of extracellular cues. This tuning is evident in immune sentinel cells such as macrophages, which respond to pathogens and cytokines with phenotypic shifts driven by epigenomic reprogramming. Recent studies indicate that this reprogramming arises from the activity of transcription factors including nuclear factor kappa-light-chain-enhancer of activated B cells (NFκB). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 96 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146068/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA609157 Series Accession: GSE146068 ID: 200146068 1134. Aberrant stabilized ETV4 expression cooperates with loss of p53 to promote invasive prostate carcinoma (Submitter supplied) Chromosomal translocations or upregulations involving ETS transcription factor are frequent events in prostate cancer pathogenesis and significantly co-occurrence with p53 or PTEN loss. Caused by the low stabilities of ETS proteins in cytosol, mouse models with aberrant expression of wild type ETS transcription factors had subtle phenotypes and only drive prostate cancer progression in the setting of Pten loss. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11002 GPL17021 15 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA535484 Series Accession: GSE130311 ID: 200130311 1135. The chromatin and regulatory properties of pluripotency-associated poised enhancers are conserved in vivo [ATAC-seq] (Submitter supplied) Transcriptional and phenotypic robustness during development is believed to require complex regulatory landscapes whereby multiple enhancers redundantly control the expression of major cell identity genes. In contrast, we previously described a limited and genetically distinct set of distal regulatory elements, known as poised enhancers (PEs), that control the induction of genes involved in early brain development in a hierarchical and non-redundant manner. more... Organism: Gallus gallus; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL26853 GPL24247 3 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673866 Series Accession: GSE160653 ID: 200160653 1136. Chromatin analysis of multiple myeloma cells following CBP/p300 inhibition and degradation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 43 Samples FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160337/ Series Accession: GSE160337 ID: 200160337 1137. Chromatin analysis of multiple myeloma cells following CBP/p300 inhibition and degradation (ATAC-Seq) (Submitter supplied) We performed ATAC-seq on MM.1S cells treated with A-485, GNE-781, and the combination of both, or with dCBP-1. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 15 Samples FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160333/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672963 Series Accession: GSE160333 ID: 200160333 1138. The histone chaperone HIR establishes chromatin states controling nitrogen assimilation and virulence in Candida albicans (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Candida albicans Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL27827 GPL19036 38 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157599/ Series Accession: GSE157599 ID: 200157599 1139. The histone chaperone HIR establishes chromatin states controling nitrogen assimilation and virulence in Candida albicans [ATAC-seq] (Submitter supplied) ATAC-seq analysis of wild type C. albicans and a HIR1 gene deletion mutant during nutrient rich growth (YPD) and upon the shift to nitrogen starvation in yeast carbon base medium supplemented with BSA (YCB-BSA medium). Organism: Candida albicans Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL27827 20 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661762 Series Accession: GSE157568 ID: 200157568 1140. Prototypical oncogene family Myc defines unappreciated distinct lineage states of small cell lung cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL11154 33 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156334/ Series Accession: GSE156334 ID: 200156334 1141. Prototypical oncogene family Myc defines unappreciated distinct lineage states of small cell lung cancer [ATAC-seq] (Submitter supplied) Small cell lung cancer (SCLC) frequently harbors mutually exclusive genomic amplification of MYC family members. Therefore, it has been long suggested that they are functionally equivalent; however, more recently, their expression has been associated with specific neuroendocrine markers and distinct histopathology. Integrated transcriptomic and epigenomic analyses showed that c-Myc and L-Myc impart neuronal and non-neuroendocrine associated transcriptional programs, respectively, both associated with distinct SCLC lineage. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL18573 18 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156333/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA657552 Series Accession: GSE156333 ID: 200156333 1142. Chromatin status and transcriptomics of HEK293, U2OS, HepG2 and K562 (Submitter supplied) RNA-seq, H3K27Ac ChIP-seq, and ATAC-seq data of U2OS, HEK293, HepG2, and K562 cell lines Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 28 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA578731 Series Accession: GSE139190 ID: 200139190 1143. c-JUN is a pioneer factor safeguarding the primed state of pluripotency (ATAC-Seq) (Submitter supplied) Mouse ESCs and EpiSCs represent naive and primed states of plurioptency corresponding to two consecutive stages of embryo development. Here we map their chromatin accessibility landscapes and show that naive specific open chromatin are enriched with motifs for Oct/Sox/Klf/TCF and primed one with AP1 motifs. The AP1 founding member c-Jun is expressed in EpiSCs and occupies both open and closed chromatin. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 56 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA525818 Series Accession: GSE127920 ID: 200127920 1144. Re-expression of SMARCA4/BRG1 in Small Cell Carcinoma of Ovary, Hypercalcemic Type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 79 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151026/ Series Accession: GSE151026 ID: 200151026 1145. Re-expression of SMARCA4/BRG1 in Small Cell Carcinoma of Ovary, Hypercalcemic Type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism [RNA-seq] (Submitter supplied) Small cell carcinoma of the ovary, hypercalcemic type (SCCOHT) is a rare and aggressive form of ovarian cancer. SCCOHT tumors have inactivating mutations in SMARCA4 (BRG1), one of the two mutually exclusive ATPases of the SWI/SNF chromatin remodeling complex. To address the role that BRG1 loss plays in SCCOHT tumorigenesis, we performed integrative multi-omic analyses in a SCCOHT cell line +/- BRG1 re-expression. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (BW, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA634382 Series Accession: GSE151025 ID: 200151025 1146. Re-expression of SMARCA4/BRG1 in Small Cell Carcinoma of Ovary, Hypercalcemic Type (SCCOHT) promotes an epithelial-like gene signature through an AP-1-dependent mechanism [ATAC-seq] (Submitter supplied) Small cell carcinoma of the ovary, hypercalcemic type (SCCOHT) is a rare and aggressive form of ovarian cancer. SCCOHT tumors have inactivating mutations in SMARCA4 (BRG1), one of the two mutually exclusive ATPases of the SWI/SNF chromatin remodeling complex. To address the role that BRG1 loss plays in SCCOHT tumorigenesis, we performed integrative multi-omic analyses in a SCCOHT cell line +/- BRG1 re-expression. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA634370 Series Accession: GSE151014 ID: 200151014 1147. Telomeres reforged with non-telomeric sequences in mouse embryonic stem cells (ATAC-seq) (Submitter supplied) Telomere maintenance is indispensable for perpetuated cell division, but telomeres are not necessarily composed of a fixed sequence. Here we report the establishment of a model for alternative lengthening of telomeres (ALT) in mouse embryonic stem cells (mESCs) in which telomeres are reconstructed with an internal ALT template. Longitudinal whole-genome analyses of ALT mESCs showed that pre-amplification of the template into a telomeric region was a prerequisite for ALT activation, and that extensive copy number variations became concentrated in subtelomeric regions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622534 Series Accession: GSE147912 ID: 200147912 1148. The IPF-associated variant in MUC5B, rs35705950, resides within an enhancer that is subject to lineage- and disease-dependent epigenetic remodeling (Submitter supplied) Genetic polymorphisms account for over 30% of the risk for sporadic pulmonary fibrosis. Yet it remains unknown how the minor variant of rs35705950, the strongest driver of IPF genetic risk, mediates molecular changes to influence IPF development. In the parent publication we use chromatin immunoprecipitation, nuclease sensitivity, nascent transcript analysis, bulk RNA- and ATAC-seq from established cell lines, and finally, paired single-nucleus RNA- and ATAC-seq from IPF patients and controls to demonstrate that the variant rs35705950 resides within a classically defined enhancer of the MUC5B locus. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL18573 8 Samples FTP download: GEO (BED, MTX, RDS, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161685/ Series Accession: GSE161685 ID: 200161685 1149. Gain-of-function MUC5B Promoter Variant, Strongly Linked to Idiopathic Pulmonary Fibrosis, Defines an Epigenetically Poised Enhancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL20301 24 Samples FTP download: GEO (BED, BEDGRAPH, MTX, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157691/ Series Accession: GSE157691 ID: 200157691 1150. Gain-of-function MUC5B Promoter Variant, Strongly Linked to Idiopathic Pulmonary Fibrosis, Defines an Epigenetically Poised Enhancer (ATAC-seq) (Submitter supplied) The G/T transversion, rs35705950, located approximately 3 kb upstream of the MUC5B start site, is the cardinal risk factor for IPF. Here, we investigate the function and chromatin structure of this -3 kb region and provide evidence that it functions as a classically defined enhancer subject to epigenetic programming. We use nascent transcript analysis to show that RNA polymerase II loads within 10 bp of the G/T transversion site, definitively establishing enhancer function for the region. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 10 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA662222 Series Accession: GSE157606 ID: 200157606 1151. Gain-of-function MUC5B Promoter Variant, Strongly Linked to Idiopathic Pulmonary Fibrosis, Defines an Epigenetically Poised Enhancer (PRO-seq) (Submitter supplied) The G/T transversion, rs35705950, located approximately 3 kb upstream of the MUC5B start site, is the cardinal risk factor for IPF. Here, we investigate the function and chromatin structure of this -3 kb region and provide evidence that it functions as a classically defined enhancer subject to epigenetic programming. We use nascent transcript analysis to show that RNA polymerase II loads within 10 bp of the G/T transversion site, definitively establishing enhancer function for the region. more... Organism: Homo sapiens Type: Other Platform: GPL18573 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658315 Series Accession: GSE156541 ID: 200156541 1152. Adaptive responses to mTOR targeting sustain hematopoietic and leukemia stem cell proliferation II (Submitter supplied) mTOR is an important anti-cancer target that integrates diverse signals to control protein synthesis and cell growth. Numerous studies by using mTOR inhibitors and/or gene deletion of mTOR negative regulators have implicated mTOR targeting in suppressing gene expression and cell proliferation. However, we found that gene targeting of mTOR in mouse hematopoietic stem cells (HSCs) results in a loss of quiescence and increased proliferation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 3 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554691 Series Accession: GSE134317 ID: 200134317 1153. Adaptive responses to mTOR gene targeting in hematopoietic stem cells reveal a proliferative mechanism evasive to mTOR inhibition (Submitter supplied) The mechanistic target of rapamycin (mTOR) is a central regulator of cell growth and an attractive anti-cancer target that integrates diverse signals to control cell proliferation. Previous studies using mTOR inhibitors have shown that mTOR targeting suppresses gene expression and cell proliferation. To date, however, mTOR targeted therapies in cancer have seen very limited efficacy, and one key issue is related to the development of evasive resistance. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 20 Samples FTP download: GEO (BED, FPKM_TRACKING) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554692 Series Accession: GSE134316 ID: 200134316 1154. An in-vivo screen of noncoding elements reveals that Daedalus is a gatekeeper of a novel Ikaros-dependent checkpoint during haematopoiesis III (Submitter supplied) The development of all lymphoid lineages relies on a tightly-controlled series of gene expression patterns as development proceeds through a series of progenitors1-8. These gene expression patterns are understood to be controlled by lineage-specifying transcription factors, however these factors often are found to have broad expression patterns and activities across lineages. Given their role in regulating cell-type specific gene expression, noncoding loci are thought be important in the lineage-specific regulation of this complex process6,9-16. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA645704 Series Accession: GSE154273 ID: 200154273 1155. Distinct mechanisms for TMPRSS2 expression explain organ-specific inhibition of SARS-CoV-2 infection by enzalutamide (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 9 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163632/ Series Accession: GSE163632 ID: 200163632 1156. Distinct mechanisms for TMPRSS2 expression explain organ-specific inhibition of SARS-CoV-2 infection by enzalutamide [ATAC-Seq] (Submitter supplied) The coronavirus disease 2019 (COVID-19) pandemic, caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has rapidly become a global public health threat due to the lack of effective drugs or vaccines against SARS-CoV-2. The efficacy of several repurposed drugs has been evaluated in clinical trials. Among these drugs, a second second-generation antiandrogen agent, enzalutamide, was proposed because it reduces the expression of transmembrane serine protease 2 (TMPRSS2), a key component mediating SARS-CoV-2-driven entry into host cells, in prostate cancer cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA686970 Series Accession: GSE163624 ID: 200163624 1157. Trithorax Cxxc1-directed epigenetic dynamics licensing CD4+ T cell differentiation (Submitter supplied) Different dynamics of gene expression are observed during cell differentiation. In T-cells, genes that are turned on early, or turned off and stay off have been thoroughly studied. However, genes that are initially turned off but then turned on again after stimulation has ceased have not been defined; they are obviously important, especially in the context of acute versus chronic inflammation. Using the Th1/Th2 differentiation paradigm, we found that Cxxc1 subunit of the Trithorax complex directs transcription of genes initially downregulated by TCR stimulation but upregulated again in a later phase. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18480 117 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA669675 Series Accession: GSE159505 ID: 200159505 1158. The regulatory genome of the malaria vector Anopheles gambiae: integrating chromatin accessibility and gene expression (Submitter supplied) Anopheles gambiae mosquitoes are primary human malaria vectors, but we know very little about their mechanisms of transcriptional regulation. We profiled chromatin accessibility by ATAC-seq in laboratory-reared An. gambiae mosquitoes experimentally infected with the human malaria parasite Plasmodium falciparum. By integrating ATAC-seq, RNA-seq and ChIP-seq data we showed a positive correlation between accessibility at promoters and introns, gene expression and active histone marks. more... Organism: Anopheles gambiae Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL28724 GPL22033 12 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640953 Series Accession: GSE152924 ID: 200152924 1159. Acute BAF perturbation causes immediate changes in chromatin accessibility (Submitter supplied) Loss-of-function mutations in genes coding for subunits of the large, multifarious BRG1/BRM associated factor (BAF) chromatin remodeling complexes are frequently causative for cancer or developmental diseases. Cells lacking the most frequently mutated subunits, like the ATPase SMARCA4, typically exhibit drastic chromatin accessibility changes, especially of important regulatory regions. However, so far it remains unknown how these changes are established over time, and whether they are causative for intra-complex synthetic lethalities abrogating the formation or activity of BAF complexes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL21290 209 Samples FTP download: GEO (CSV, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623383 Series Accession: GSE148175 ID: 200148175 1160. IL-27 driven transcriptional network identifies regulators of IL-10 expression across T helper cell subsets (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 183 Samples FTP download: GEO (CEL, H5, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159208/ Series Accession: GSE159208 ID: 200159208 1161. IL-27 driven transcriptional network identifies regulators of IL-10 expression across T helper cell subsets[Prdm1/Maf KO Tr1 ATAC-seq] (Submitter supplied) IL-27 is an immunoregulatory cytokine that suppresses inflammation through multiple mechanisms including induction of IL-10, but the transcriptional network mediating its diverse functions remains unclear. Combining temporal RNA profiling with computational algorithms, we predict 79 transcription factors induced by IL-27 in T cells. We validate 11 known and discover 5 positive (Cebpb, Fosl2, Tbx21, Hlx, Atf3) and 2 negative (Irf9, Irf8) Il10 regulators, generating an experimentally refined regulatory network for Il10. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 15 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA666212 Series Accession: GSE158701 ID: 200158701 1162. SPT6 Promotes Epidermal Differentiation and Blockade of an Intestinal Phenotype through Control of Transcriptional Elongation (Submitter supplied) In adult tissue, stem and progenitor cells must tightly regulate the balance between proliferation and differentiation to sustain homeostasis. It is assumed that the rate-limiting step during the induction of somatic tissue differentiation is the recruitment of RNA polymerase II (Pol II) to promoters. Here we show that ~30% of induced differentiation genes already contain stalled Pol II at the promoters in epidermal stem and progenitor cells which is then released into productive transcription elongation upon differentiation. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 24 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641564 Series Accession: GSE153129 ID: 200153129 1163. Chromatin accessibility to investigate the TF-chromatin information patterns encoded in the accessible genome (Submitter supplied) Purpose: The goal of this study is to use chromatin accessibility data to study the information patterns of chromatin accessibility that encode TF-chromatin interactions. Methods: We generated chromatin accessibility data from the GM12878 lymphoblastoid cell line using a modified protocol where the ATAC-seq fragments are sonicated during the library preparation. The goal of the sonication step is to disrupt the observed fragment size distribution, therefore masking local TF-chromatin interactions encoded in the larger fragment sizes (e.g. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 4 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA557298 Series Accession: GSE135074 ID: 200135074 1164. Functional genomics atlas of synovial fibroblasts defining rheumatoid arthritis heritability (Submitter supplied) Genome-wide association studies have reported more than 100 risk loci for rheumatoid arthritis, and there loci have been shown to be enriched in immune cell-specific enhancers, we add Synovial fibroblasts (FLS), the local stromal cells of joints to this analysis. We integrated ChIP-seq, Hi-C, Capture Hi-C, ATAC-seq and RNA-seq datasets from FLS , with genetic fine-mapping of RA loci. From this we identified putative casual variants, enhancers and genes for 30-60% of RA loci and demonstrated that FLS regulatory elements accounts for up to 24% of RA heritability. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL24676 GPL16791 GPL20301 142 Samples FTP download: GEO (BED, BROADPEAK, HIC, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA686662 Series Accession: GSE163548 ID: 200163548 1165. Murine mononuclear phagocyte lineage cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 88 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149762/ Series Accession: GSE149762 ID: 200149762 1166. Genome wide profiling of chromatin accessibilities in murine mononuclear phagocyte lineage progenitor cells (Submitter supplied) To understand the mechanism underlying monocyte and dendritic cell development through the regulation of Irf8 expression by the 56 kb downstream (+56 kb) Irf8 enhancer, we analyzed chromatin accessibility of bone marrow cells from wild-type and Irf8-/- mice. Combined with the epigenetic profiling by H3K27 acetylation ChIP-seq, the +56 kb enhancer opens at LMPP stage, and gets activated at its highest level in mononuclear phagocyte lineage progenitor cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA629970 Series Accession: GSE149756 ID: 200149756 1167. Chromatin profiling of CLL cells with hyperactivated Notch1 compared to control CLL cells [ATAC-seq] (Submitter supplied) NOTCH1 gain-of-function mutations are recurrent in B cell chronic lymphocytic leukemia (B-CLL), where they are associated with accelerated disease progression and refractoriness to chemotherapy. The specific role of NOTCH1 in the development and progression of this malignancy is unclear. Herein we assess the impact of loss of Notch signaling and pathway hyperactivation in an in vivo mouse model of CLL (IgH.TEm) that faithfully recapitulates many features of the human pathology. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160508/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673427 Series Accession: GSE160508 ID: 200160508 1168. Combinatorial transcription factor activities on open chromatin induce embryonic heterogeneity in vertebrates (Submitter supplied) We applied chromatin accessibility and single cell transcriptome analyses to explore the emergence of heterogeneity and underlying gene-regulatory mechanisms during early gastrulation in Xenopus. TF activity was inferred by integrating chromatin accessibility and single cell transcriptomics. Our results show that combinatorial activity of zygotically expressed transcription factors acts on maternally-regulated accessible chromatin to induce organizer gene expression. Organism: Xenopus tropicalis Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21875 GPL24884 132 Samples FTP download: GEO (BED, TAB, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607864 Series Accession: GSE145619 ID: 200145619 1169. Transcription factor enrichment analysis (TFEA): Quantifying the activity of hundreds of TFs from a single experiment (Submitter supplied) Detecting differential activation of transcription factors (TFs) in response to perturbation provides insight into global cellular processes. We present here Transcription Factor Enrichment Analysis (TFEA), a robust and reliable computational method that can detect differential activity of hundreds of TFs given any set of perturbation data. TFEA draws inspiration from GSEA and detects positional motif enrichment within an ordered list of regions of interest (ROI). more... Organism: Homo sapiens Type: Other Platform: GPL18573 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596991 Series Accession: GSE142419 ID: 200142419 1170. Drosophila Fezf functions as a transcriptional repressor to direct layer specific synaptic connectivity in the fly visual system (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163311/ Series Accession: GSE163311 ID: 200163311 1171. Drosophila L3 RNA-seq at 24h APF (Submitter supplied) The layered compartmentalization of functionally-related synaptic connections, a common feature of nervous systems, underlies proper connectivity between neurons and enables parallel processing of neural information. However, the stepwise development of layered neuronal connections is not well understood. The medulla neuropil of the Drosophila melanogaster visual system is comprised of 10 discrete layers (M1-M10), within which neural computations underlying distinct visual features are processed. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing Platform: GPL19132 6 Samples FTP download: GEO (CSV, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA685737 Series Accession: GSE163308 ID: 200163308 1172. Drosophila L3 ATAC-seq at 24h APF (Submitter supplied) The layered compartmentalization of functionally-related synaptic connections, a common feature of nervous systems, underlies proper connectivity between neurons and enables parallel processing of neural information. However, the stepwise development of layered neuronal connections is not well understood. The medulla neuropil of the Drosophila melanogaster visual system is comprised of 10 discrete layers (M1-M10), within which neural computations underlying distinct visual features are processed. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA685736 Series Accession: GSE163307 ID: 200163307 1173. ATAC-seq in NOTCH1-induced mouse T-ALLs (Submitter supplied) Here we report the genome-wide open chormatin profile (ATACseq) of a NOTCH1-induced mouse T-cell Acute Lymphoblastic Leukemia Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673809 Series Accession: GSE160620 ID: 200160620 1174. Brain-infiltrating CD8+ T cell activity after acute infection and during CNS autoimmunity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 30 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149643/ Series Accession: GSE149643 ID: 200149643 1175. Brain-infiltrating CD8+ T cell chromatin accessibility after acute infection and during CNS autoimmunity [ATAC-Seq] (Submitter supplied) CD8+ T cells play a pivotal role in eliminating pathogens or tumors, but they equally exert tissue damage in autoimmune or chronic inflammatory diseases. While the mechanisms regulating the differentiation of CD8+ T cells in chronic infections and cancer are just beginning to be unraveled, we still lack knowledge about how this unfolds in autoimmune diseases. Here, we investigated in a model of chronic central nervous system autoimmunity, the transcriptional and epigenetic landscape of autoreactive brain infiltrating CD8+ T cells and how these cells diverge from classical long-lived memory CD8+ T emerging after virus infection. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA629522 Series Accession: GSE149642 ID: 200149642 1176. Optimization of CAR T cell signaling by incorporation of null mutations (Submitter supplied) An obstacle with continued clinical development of CAR T cells is the limited understanding of CAR T cell biology and its mechanisms of anti-tumor immunity. We and others have shown that CARs with a CD28 co-stimulatory domain drive high levels of T cell activation that also lead to exhaustion and shortened persistence. This led us to hypothesize that by incorporating null mutations of CD28 subdomains (YMNM, PRRP, or PYAP) we could optimize CAR T cell signaling and reduce exhaustion. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142506/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597222 Series Accession: GSE142506 ID: 200142506 1177. Different mutant RUNX1 oncoprotein classes program alternate hematopoietic differentiation trajectories [ATAC-Seq] (Submitter supplied) Mutations of the hematopoietic master regulator RUNX1 cause acute myeloid leukaemia, familial platelet disorder and other haematological malignancies whose phenotypes and prognoses depend on the class of RUNX1 mutation. The biochemical behavior of these oncoproteins and their ability to cause unique diseases has been well studied but the genomic basis of their differential action is unknown. To address this question we compared integrated phenotypic, transcriptomic and genomic data from cells expressing four types of RUNX1 oncoproteins in an inducible fashion during blood development from embryonic stem cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA646875 Series Accession: GSE154620 ID: 200154620 1178. BACH2 Establishes the Transcriptional and Epigenetic Programs of Stem-Like CD8 T cells (Submitter supplied) During chronic infection and cancer, a self-renewing CD8 T cell subset maintains long-term T-cell immunity and mediate the response induced by immunotherapy. These stem-like CD8 T cells diverge from other CD8 subsets early in the immune response and display distinct transcriptional and epigenetic signatures. Here, we show that locus encoding transcriptional factor BACH2 is transcriptionally and epigenetically active in stem-like CD8 T cells but not in terminally exhausted CD8 T cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL21493 40 Samples FTP download: GEO (BW, MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA639133 Series Accession: GSE152379 ID: 200152379 1179. Skin-resident innate lymphoid cells converge on a pathogenic effector state (Submitter supplied) Tissue-resident innate lymphoid cells (ILCs) help sustain barrier function and respond to local signals. ILCs are traditionally classified as ILC1, ILC2 or ILC3 on the basis of their expression of specific transcription factors and cytokines1. In the skin, disease-specific production of ILC3-associated cytokines interleukin (IL)-17 and IL-22 in response to IL-23 signalling contributes to dermal inflammation in psoriasis. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL19057 7 Samples FTP download: GEO (BED, FA, MTX, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA629379 Series Accession: GSE149622 ID: 200149622 1180. Pioneer activity of an oncogenic fusion transcription factor at inaccessible chromatin (Submitter supplied) We developed a new method for ChIP-seq with per-cell normalization (pc-ChIP-seq) to define PAX3-FOXO1 localization in rhabdomyosarcoma (RMS). We report novel pioneer function for the major driver oncogene in RMS, with nucleosome-motif targeting and kinetic displacement of nucleosomes in human cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 31 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163068/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA684593 Series Accession: GSE163068 ID: 200163068 1181. Interdependence between histone marks and steps in Pol II transcription [Danko.submission] (Submitter supplied) We trained sensitive machine learning models that decompose maps of primary transcription into ChIP-seq profiles representing 9 distinct histone modifications. We show that transcription measured using precision run-on and sequencing (PRO-seq)  can recover the pattern of active histone modifications at nucleosome resolution and with an accuracy that rivals the correlation between independent ChIP-seq experiments in holdout cell types. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 87 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE163nnn/GSE163043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA684511 Series Accession: GSE163043 ID: 200163043 1182. WHSC1/NSD2 regulates immune infiltration in prostate cancer [ATAC-Seq] (Submitter supplied) the WHSC1 enzymes controls immune infiltration in prostate cancer by regulating the expression of genes in immune pathways and genes in the antigen processng and presentation machinery Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA642244 Series Accession: GSE153335 ID: 200153335 1183. Genetic interaction mapping informs integrative structure determination of protein complexes (Submitter supplied) Determining structures of protein complexes is crucial for understanding cellular functions. Here, we describe an integrative structure determination approach that relies on in vivo measurements of genetic interactions. We construct phenotypic profiles for point mutations crossed against gene deletions or exposed to environmental perturbations, followed by converting similarities between two profiles into an upper bound on the distance between the mutated residues. more... Organism: Saccharomyces cerevisiae Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21656 104 Samples FTP download: GEO (BEDGRAPH, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA672982 Series Accession: GSE160350 ID: 200160350 1184. Genomic and epigenomic 1α,25(OH)2D3 responses in human colonic organoids (Submitter supplied) Background & Aims: Active vitamin D, 1α,25(OH)2D3, is a nuclear hormone with roles in colonic homeostasis and carcinogenesis, yet mechanisms underlying these effects are incompletely understood. Human organoids are an ideal system to study genomic and epigenomic host-environment interactions. Here, we utilize human colonic organoids to measure 1α,25(OH)2D3 responses on genome-wide gene expression and chromatin accessibilityover time. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL24676 24 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA683597 Series Accession: GSE162856 ID: 200162856 1185. p53 is a central regulator driving neurodegeneration caused by C9orf72 poly(PR) (Submitter supplied) To analyze the epigenomic landscape of neurodegeneration caused by ALS-associated protein aggregation, we developed a modified version of ATAC-seq that works on primary neurons. We discovered that C9orf72-ALS/FTD associated poly(PR) activated a remarkably specific signature of chromatin accessibility, involving transcriptional targets of the tumor suppressor gene p53. Our findings reveal an unexpected role of p53 as a mediator of neurodegeneration elicited by poly(PR) and provide an example of how ATAC-seq can now be applied to neurons to define mechanisms of neurodegeneration. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL21697 GPL21626 GPL21103 52 Samples FTP download: GEO (BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA680362 Series Accession: GSE162048 ID: 200162048 1186. Photoperiod-mediated Chromatin Accessibility in the Single Cell Types of Leaf Phloem and Epidermis in Arabidopsis (Submitter supplied) Photoperiodic control of the phase transition from vegetative to reproductive growth plays a key role in high plants. Although leaves are considered to be the major organs to perceive the day-length signal, it is not clear what the specific responses happen in the vasculature and epidermis tissues. Here, we performed ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) and RNA-seq with purified phloem and epidermis nuclei by applying INTACT (isolation of nuclei tagged in specific cell/tissue types) sorting method. more... Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23157 19 Samples FTP download: GEO (BED, BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597758 Series Accession: GSE142613 ID: 200142613 1187. The genomic underpinnings of oscillatory biomarkers supporting successful memory encoding in humans (Submitter supplied) Brain oscillations are remarkable components of brain activity that support memory encoding. However, it remains a major challenge to determine the molecular mechanisms underlining this activity in humans. Here, we used direct intracranial electroencephalography recordings from patients performing free recall tasks of verbal memory encoding in temporal cortex. Using resected tissue transcriptomics from the same patients, we linked gene expression with brain oscillations, identifying genes correlated with oscillatory signatures of memory formation across six frequency bands. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL24676 56 Samples FTP download: GEO (H5, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587524 Series Accession: GSE139914 ID: 200139914 1188. Single cell ATAC-seq of neonatal heart regeneration (Submitter supplied) The adult mammalian heart has limited capacity for regeneration following injury, whereas the neonatal heart can readily regenerate within a short period after birth. Neonatal heart regeneration is orchestrated by multiple cell types intrinsic to the heart, as well as immune cells that infiltrate the heart after injury. To elucidate the transcriptional responses of the different cellular components of the mouse heart following injury, we performed single cell RNA-sequencing on neonatal hearts at various time points following myocardial infarction, and coupled the results with bulk tissue RNA-sequencing data collected at the same time points. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BED, CSV, H5, MTX, TBI, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA642813 Series Accession: GSE153479 ID: 200153479 1189. Genomic architecture and evolution of a seasonal reaction norm [Hi-C] (Submitter supplied) Here we used artificial selection to assimilate a seasonal wing color phenotype from a naturally plastic population of butterflies. Using SNP association and RNAseq we mapped three genes responsible for wing color fixation, including the color pattern supergene cortex. Combined with endocrine and chromatin accessibility assays, we found that the rapid transition of wing coloration from an environmentally determined trait to a fixed, genetic trait occurred through selection on cis-regulatory alleles of genes with wing-specific functions, not by changes in environmental detection or hormone signaling. Organism: Junonia coenia Type: Other Platform: GPL23448 3 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641138 Series Accession: GSE152997 ID: 200152997 1190. Che-1/AATF-induced transcriptionally active chromatin promotes cell proliferation in Multiple Myeloma (Submitter supplied) We have strong evidence on the essential role of Che-1 protein in promoting the proliferation of MM cells by sustaining chromatin dynamics and cellular transcription on a global scale using numerous experimental approaches, including a generation of a specific transgenic mouse model. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 33 Samples FTP download: GEO (BED, BROADPEAK, BW, TSV, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627186 Series Accession: GSE149031 ID: 200149031 1191. Genomic architecture and evolution of a seasonal reaction norm [ATAC-seq] (Submitter supplied) Here we used artificial selection to assimilate a seasonal wing color phenotype from a naturally plastic population of butterflies. Using SNP association and RNAseq we mapped three genes responsible for wing color fixation, including the color pattern supergene cortex. Combined with endocrine and chromatin accessibility assays, we found that the rapid transition of wing coloration from an environmentally determined trait to a fixed, genetic trait occurred through selection on cis-regulatory alleles of genes with wing-specific functions, not by changes in environmental detection or hormone signaling. Organism: Junonia coenia Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23448 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559165 Series Accession: GSE135522 ID: 200135522 1192. Genomic architecture and evolution of a seasonal reaction norm [RNA-seq] (Submitter supplied) Here we used artificial selection to assimilate a seasonal wing color phenotype from a naturally plastic population of butterflies. Using SNP association and RNAseq we mapped three genes responsible for wing color fixation, including the color pattern supergene cortex. Combined with endocrine and chromatin accessibility assays, we found that the rapid transition of wing coloration from an environmentally determined trait to a fixed, genetic trait occurred through selection on cis-regulatory alleles of genes with wing-specific functions, not by changes in environmental detection or hormone signaling. Organism: Junonia coenia Type: Expression profiling by high throughput sequencing Platform: GPL23448 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559164 Series Accession: GSE135521 ID: 200135521 1193. Chromatin structure profiling of mouse muscle stem cells by ATAC-seq (Submitter supplied) By comparing ATAC-seq from freshly isolated satellite cells (QSC), satellite cells isolated 2.5 days post-injury (ASC), and satellite cells cultured for differentiation, we observed a gradual opening of satellite cell chromatin structure during activation and differentiation process. We used ATAC-seq to study the functional role of LncMyod during satellite cell differentiation and identified genes that exhibited decrease of accessibilities to their transcription start sites (TSS). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532624 Series Accession: GSE129745 ID: 200129745 1194. Core transcription regulatory circuitry orchestrates stratified epithelial homeostasis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 44 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156273/ Series Accession: GSE156273 ID: 200156273 1195. Core transcription regulatory circuitry orchestrates stratified epithelial homeostasis (ChIP-seq, ATAC-seq) (Submitter supplied) Adult stem cell identity, plasticity, and homeostasis are precisely orchestrated by lineage-restricted epigenetic and transcriptional regulatory networks. Here, by integrating super-enhancer and chromatin accessibility landscapes, we delineate core transcription regulatory circuitries (CRCs) of limbal stem/progenitor cells (LSCs) and find that RUNX1 and SMAD3 are required for maintenance of the corneal epithelial identity and homeostasis. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 32 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA657249 Series Accession: GSE156272 ID: 200156272 1196. Defining a critical Nanog enhancer using chromatin-focused approaches identifies RNAPII recruitment as required for expression [ATAC-Seq] (Submitter supplied) Transcriptional enhancers have been defined by their ability to operate independent of distance and orientation in plasmid reporter assays, rather than within native chromatin. We employed a combination of approaches to investigate the Nanog locus in mouse embryonic stem cells (ESCs) and an associated cis regulatory element (CRE) which may operate as a super-enhancer (SE) or alternative promoter. We establish the element is a SE within chromatin using distance- and orientation-independence as criteria. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA628990 Series Accession: GSE149531 ID: 200149531 1197. Genome editing demonstrates that the -5 kb Nanog enhancer regulates Nanog expression by modulating RNAPII initiation and/or recruitment (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other Platform: GPL19057 18 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143993/ Series Accession: GSE143993 ID: 200143993 1198. ArchR: An integrative and scalable software package for single-cell chromatin accessibility analysis (Submitter supplied) The advent of large-scale single-cell chromatin accessibility profiling has accelerated our ability to map gene regulatory landscapes, but has outpaced the development of scalable software to rapidly extract biological meaning from these data. Here we present a software suite for single-cell analysis of regulatory chromatin in R (ArchR; www.ArchRProject.com) that enables fast and comprehensive analysis of single-cell chromatin accessibility data. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL24676 22 Samples FTP download: GEO (RDS, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA682619 Series Accession: GSE162690 ID: 200162690 1199. Imprinting epigenetic memories in chromatin accessibility in hematopoietic stem cells with aging (ATAC-seq) (Submitter supplied) Hematopoietic stem cells (HSCs) exhibit considerable cell-intrinsic changes with age. Epigenetic alterations are one of the hallmarks of HSC aging, and profiling of DNA methylation and histone modifications has provided potential mechanisms that contribute to HSC aging. Chromatin accessibility reflects a comprehensive transcriptional network operating in cells; however, it has not yet been investigated in HSC aging. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 36 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA682201 Series Accession: GSE162551 ID: 200162551 1200. Combined epigenetic and metabolic treatments overcome differentiation blockade in acute myeloid leukemia (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL21103 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162398/ Series Accession: GSE162398 ID: 200162398 1201. Combined epigenetic and metabolic treatments overcome differentiation blockade in acute myeloid leukemia [ATAC-Seq] (Submitter supplied) A hallmark of acute myeloid leukemia (AML) is the inability of self-renewing malignant cells to mature into a non-dividing terminally differentiated state. To better understand how chromatin factors such as LSD1 interact with metabolic pathways to support the differentiation blockade, we screened a small molecule library to identify druggable substrates that promote myeloid maturation. We found that differentiation caused by LSD1 inhibition is enhanced by combinatorial perturbation of purine nucleotide salvage and de novo lipogenesis pathways. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA681977 Series Accession: GSE162397 ID: 200162397 1202. Fat1 deletion promotes hybrid EMT state with enhanced tumor progression, stemness, and metastasis (ATAC-Seq) (Submitter supplied) FAT1, a protocadherin, is among the most frequently mutated genes in human cancers. However, the role and the molecular mechanisms by which FAT1 mutations control tumor initiation and progression are poorly understood. Here, using different mouse cancer models including skin squamous cell carcinoma (SCC) and lung tumors we found that Fat1 deletion accelerated tumor initiation and malignant progression and promoted hybrid epithelial to mesenchymal transition (EMT) phenotype. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 3 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA665480 Series Accession: GSE158500 ID: 200158500 1203. Capture of mouse and human stem cells with features of formative pluripotency [ATAC-Seq] (Submitter supplied) Pluripotent cells emerge as a naïve founder population in the blastocyst, acquire capacity for germline and soma formation, and then undergo lineage priming. Mouse embryonic stem (ES) cells and epiblast stem cells (EpiSCs) respectively represent the initial naïve and final primed phases of pluripotency. Here we investigated the intermediate formative stage. Using minimal exposure to specification cues, we derived stem cells from formative mouse epiblast. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 26 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544007 Series Accession: GSE131549 ID: 200131549 1204. A chromatin basis for protein-RNA correlation in human cancer (Submitter supplied) This work describes a previously unreported link between the chromatin states and protein abundance in cancer. We curated and studied a novel cohort of human thyroid tumors that allowed us to identify chromatin features that directly regulate protein expression. We believe this is the first study to establish chromatin states that reflect protein abundances in human cancer. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 178 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA682135 Series Accession: GSE162515 ID: 200162515 1205. Regulation and Role of Aryl Hydrocarbon Receptor in Human Embryonic Stem Cells and Their Differentiating Counterparts [RNA-Seq] (Submitter supplied) Aryl hydrocarbon receptor (AHR) is a ligand-activated transcription factor, which mediates the effects of various environmental contaminants, like polycyclic and halogenated aromatic hydrocarbons, including the most potent agonist 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), in multiple tissues. Recent advances in AHR biology have underlined its importance in cells with high developmental potency, including pluripotent stem cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 24 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675068 Series Accession: GSE160981 ID: 200160981 1206. Regulation and Role of Aryl Hydrocarbon Receptor in Human Embryonic Stem Cells and Their Differentiating Counterparts [ChIP-Seq] (Submitter supplied) Aryl hydrocarbon receptor (AHR) is a ligand-activated transcription factor, which mediates the effects of various environmental contaminants, like polycyclic and halogenated aromatic hydrocarbons, including the most potent agonist 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), in multiple tissues. Recent advances in AHR biology have underlined its importance in cells with high developmental potency, including pluripotent stem cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 24 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675067 Series Accession: GSE160980 ID: 200160980 1207. Regulation and Role of Aryl Hydrocarbon Receptor in Human Embryonic Stem Cells and Their Differentiating Counterparts [ATAC-seq] (Submitter supplied) Aryl hydrocarbon receptor (AHR) is a ligand-activated transcription factor, which mediates the effects of various environmental contaminants, like polycyclic and halogenated aromatic hydrocarbons, including the most potent agonist 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD), in multiple tissues. Recent advances in AHR biology have underlined its importance in cells with high developmental potency, including pluripotent stem cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA674865 Series Accession: GSE160935 ID: 200160935 1208. PRMT1-dependent histone arginine methylation regulates mature beta cell identity (ATAC-Seq) (Submitter supplied) Purpose: Loss of functional β cell mass is an essential feature of type 2 diabetes and recent studies indicate that cell dedifferentiation can result in the loss of functional cell mass. However, the mechanism of cell dedifferentiation has not been elucidated due to the lack of appropriate animal model. Methods: Prmt1 floxed mice were crossed with Rip2-Cre and Pdx1-CreERT2 mice to generate Prmt1 KO and Prmt1 iKO mice. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 5 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481045 Series Accession: GSE117099 ID: 200117099 1209. PRMT1-dependent histone arginine methylation regulates mature beta cell identity (ChIP-Seq) (Submitter supplied) Purpose: Loss of functional β cell mass is an essential feature of type 2 diabetes and recent studies indicate that cell dedifferentiation can result in the loss of functional cell mass. However, the mechanism of cell dedifferentiation has not been elucidated due to the lack of appropriate animal model. Methods: Prmt1 floxed mice were crossed with Rip2-Cre and Pdx1-CreERT2 mice to generate Prmt1 KO and Prmt1 iKO mice. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481044 Series Accession: GSE117097 ID: 200117097 1210. PRMT1-dependent histone arginine methylation regulates mature beta cell identity (RNA-Seq) (Submitter supplied) Purpose: Loss of functional β cell mass is an essential feature of type 2 diabetes and recent studies indicate that cell dedifferentiation can result in the loss of functional cell mass. However, the mechanism of cell dedifferentiation has not been elucidated due to the lack of appropriate animal model. Methods: Prmt1 floxed mice were crossed with Rip2-Cre and Pdx1-CreERT2 mice to generate Prmt1 KO and Prmt1 iKO mice. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481043 Series Accession: GSE117096 ID: 200117096 1211. SWI/SNF complex mutations promote thyroid tumor progression and resistance to redifferentiation therapy [ATAC-seq] (Submitter supplied) Recurrent mutations in genes encoding subunits of the SWI/SNF chromatin remodeling complex occur commonly in human cancers of different lineages, including advanced thyroid cancers. Thyroid-specific loss of Arid1a, Arid2 or Smarcb1 in mouse BrafV600E-mutant tumors promotes disease progression and decreased survival, associated with lesion-specific effects on chromatin accessibility and differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 23 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA682141 Series Accession: GSE162522 ID: 200162522 1212. Genome wide map of chromatin state during early development of TrkC neurons of the DRG (Submitter supplied) We isolated E11.5 TrkC neurons and profiled ATAC and H3K27ac genomic regions Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE162nnn/GSE162471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA681913 Series Accession: GSE162471 ID: 200162471 1213. H2AK121ub in Arabidopsis favors a less accessible chromatin state at transcriptional regulation hotspots [RNA-seq] (Submitter supplied) Although it is well established that Polycomb Group (PcG) complexes maintain gene repression through the incorporation of H2AK121ub and H3K27me3, little is known about the effect of these modifications on chromatin, which is fundamental to understand PcG function. Here, by integrating chromatin accessibility, histone marks and expression analyses in different Arabidopsis PcG mutants, we show that H2AK121ub marking favors a less accessible but still permissive chromatin at transcriptional regulation hotspots, which can be further reduced by EMF1 and H3K27me3. more... Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing Platform: GPL23157 12 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647214 Series Accession: GSE154697 ID: 200154697 1214. H2AK121ub in Arabidopsis favors a less accessible chromatin state at transcriptional regulation hotspots [ChIP-seq] (Submitter supplied) Although it is well established that Polycomb Group (PcG) complexes maintain gene repression through the incorporation of H2AK121ub and H3K27me3, little is known about the effect of these modifications on chromatin, which is fundamental to understand PcG function. Here, by integrating chromatin accessibility, histone marks and expression analyses in different Arabidopsis PcG mutants, we show that H2AK121ub marking favors a less accessible but still permissive chromatin at transcriptional regulation hotspots, which can be further reduced by EMF1 and H3K27me3. more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23157 15 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647213 Series Accession: GSE154696 ID: 200154696 1215. H2AK121ub in Arabidopsis favors a less accessible chromatin state at transcriptional regulation hotspots [ATAC-seq] (Submitter supplied) Although it is well established that Polycomb Group (PcG) complexes maintain gene repression through the incorporation of H2AK121ub and H3K27me3, little is known about the effect of these modifications on chromatin, which is fundamental to understand PcG function. Here, by integrating chromatin accessibility, histone marks and expression analyses in different Arabidopsis PcG mutants, we show that H2AK121ub marking favors a less accessible but still permissive chromatin at transcriptional regulation hotspots, which can be further reduced by EMF1 and H3K27me3. more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23157 12 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647212 Series Accession: GSE154695 ID: 200154695 1216. ALC1 and PARP activities coordinate chromatin accessibility and viability in homologous recombination deficient cells (ATAC-seq) (Submitter supplied) The response to Poly (ADP-ribose) polymerase inhibitors (PARPi) is dictated by homologous recombination (HR) DNA repair mechanisms and the abundance of lesions that trap PARP enzymes on chromatin. It remains unclear, however, if the established role of PARP in promoting chromatin accessibility impacts viability in these settings. Using a CRISPR based screen, we identify the PAR-binding Snf2-like ATPase, ALC1 as a key determinant of PARPi toxicity in HR-deficient cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 22 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA634143 Series Accession: GSE150955 ID: 200150955 1217. Gene regulatory networks controlling differentiation, survival, and diversification of hypothalamic Lhx6-expressing GABAergic neurons (Submitter supplied) Purpose: highthroughput sequencing (bulk RNA-Seq, bulk ATAC-Seq, and scRNA-Seq) to study hypothalamic Lhx6 neurons Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 38 Samples FTP download: GEO (CSV, MTX, ROBJ, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633155 Series Accession: GSE150687 ID: 200150687 1218. SWI/SNF complex mutations promote thyroid tumor progression and resistance to redifferentiation therapy (ATAC-seq, Fig3) (Submitter supplied) Recurrent mutations in genes encoding subunits of the SWI/SNF chromatin remodeling complex occur commonly in human cancers of different lineages, including advanced thyroid cancers. Thyroid-specific loss of Arid1a, Arid2 or Smarcb1 in mouse BrafV600E-mutant tumors promotes disease progression and decreased survival, associated with lesion-specific effects on chromatin accessibility and differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 22 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA614951 Series Accession: GSE147476 ID: 200147476 1219. SWI/SNF complex mutations promote thyroid tumor progression and resistance to redifferentiation therapy (ATAC-seq, Fig2) (Submitter supplied) Recurrent mutations in genes encoding subunits of the SWI/SNF chromatin remodeling complex occur commonly in human cancers of different lineages, including advanced thyroid cancers. Thyroid-specific loss of Arid1a, Arid2 or Smarcb1 in mouse BrafV600E-mutant tumors promotes disease progression and decreased survival, associated with lesion-specific effects on chromatin accessibility and differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA614952 Series Accession: GSE147475 ID: 200147475 1220. The TAZ-CAMTA1 and YAP-TFE3 fusion proteins modulate the basal TAZ/YAP transcriptional program by recruiting the Ada2a-containing histone acetyltransferase complex [chipseq] (Submitter supplied) The WWTR1(TAZ)-CAMTA1 and YAP1-TFE3 gene fusions are disease defining gene alterations for epithelioid hemangioendothelioma, a vascular cancer. The resultant fusion proteins fuse the C terminus of CAMTA1 and TFE3 in frame to the N terminus of TAZ and YAP, respectively. An unbiased BioID-mass spectrometry/RNAi screen identified YEATS2 and ZZZ3 as components of the Ada2a-containing histone acetyltransferase complex and key interactors of both TAZ-CAMTA1 and YAP-TFE3. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 34 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640477 Series Accession: GSE152778 ID: 200152778 1221. The TAZ-CAMTA1 and YAP-TFE3 fusion proteins modulate the basal TAZ/YAP transcriptional program by recruiting the Ada2a-containing histone acetyltransferase complex [rnaseq_sw872] (Submitter supplied) The WWTR1(TAZ)-CAMTA1 and YAP1-TFE3 gene fusions are disease defining gene alterations for epithelioid hemangioendothelioma, a vascular cancer. The resultant fusion proteins fuse the C terminus of CAMTA1 and TFE3 in frame to the N terminus of TAZ and YAP, respectively. An unbiased BioID-mass spectrometry/RNAi screen identified YEATS2 and ZZZ3 as components of the Ada2a-containing histone acetyltransferase complex and key interactors of both TAZ-CAMTA1 and YAP-TFE3. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 24 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640301 Series Accession: GSE152737 ID: 200152737 1222. The TAZ-CAMTA1 and YAP-TFE3 fusion proteins modulate the basal TAZ/YAP transcriptional program by recruiting the Ada2a-containing histone acetyltransferase complex [rnaseq_3T3] (Submitter supplied) The WWTR1(TAZ)-CAMTA1 and YAP1-TFE3 gene fusions are disease defining gene alterations for epithelioid hemangioendothelioma, a vascular cancer. The resultant fusion proteins fuse the C terminus of CAMTA1 and TFE3 in frame to the N terminus of TAZ and YAP, respectively. An unbiased BioID-mass spectrometry/RNAi screen identified YEATS2 and ZZZ3 as components of the Ada2a-containing histone acetyltransferase complex and key interactors of both TAZ-CAMTA1 and YAP-TFE3. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 24 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640300 Series Accession: GSE152736 ID: 200152736 1223. The TAZ-CAMTA1 and YAP-TFE3 fusion proteins modulate the basal TAZ/YAP transcriptional program by recruiting the Ada2a-containing histone acetyltransferase complex [atacseq] (Submitter supplied) The WWTR1(TAZ)-CAMTA1 and YAP1-TFE3 gene fusions are disease defining gene alterations for epithelioid hemangioendothelioma, a vascular cancer. The resultant fusion proteins fuse the C terminus of CAMTA1 and TFE3 in frame to the N terminus of TAZ and YAP, respectively. An unbiased BioID-mass spectrometry/RNAi screen identified YEATS2 and ZZZ3 as components of the Ada2a-containing histone acetyltransferase complex and key interactors of both TAZ-CAMTA1 and YAP-TFE3. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 20 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640298 Series Accession: GSE152733 ID: 200152733 1224. Identification of conserved cis-regulatory elements impact Mecp2 level and neurological functions (Submitter supplied) Methyl-CpG binding protein 2 (MeCP2) is a nuclear protein that binds to methylated cytosines and regulates gene expression. Normal brain function requires precise control of MeCP2 level. Loss of function mutations in the X-linked gene, MECP2 cause Rett Syndrome (RTT), a progressive neurological disorder. Increase in MeCP2 level leads to the neurological disorder MECP2 duplication syndrome (MDS). Despite the functional importance of MeCP2 in the brain, its transcriptional regulation remains poorly understood. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640181 Series Accession: GSE152719 ID: 200152719 1225. ATAC-seq profiling of of cell lines derived from primary human cornea epithelial cells (hTCEpi) and human primary corneal keratocyte cells ( hTK) (Submitter supplied) We generated novel genomic resources by mapping regions of open-chromatin, indicators of cis-regulatory activity, in immortalized corneal epithelial and stromal cell lines, using the assay for transposase accessible chromatin followed by sequencing (ATAC-seq). Overlaying these data with the well-powered UK Biobank CRF-GWAS study demonstrates the keratocyte cells to be a suitable system to guide future functional characterisation of, at least some, regulatory networks modulated by CRF-associated variants. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150064/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631013 Series Accession: GSE150064 ID: 200150064 1226. Exposure to Air pollution Disrupts Circadian Rhythm through Alterations in Chromatin Dynamics (Submitter supplied) Empirical evidence from both animals and humans suggest that PM2.5 (particulate matter < 2.5μm) exposure accelerates a variety of non-communicable diseases (NCDs) including Type 2 diabetes. We investigated whether chronic exposure to ambient air pollution (PM2.5), disrupts circadian rhythm to facilitate metabolic insulin resistance and compared the impact of inhaled ambient PM2.5 alone or in combination with continuous light exposure (LL). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607560 Series Accession: GSE145566 ID: 200145566 1227. A hotspot mutation p.L162R in IKZF3 drives leukemogenesis via transcriptional dysregulation (Submitter supplied) IKZF3 encodes an IKAROS Family transcription factor and has been recently identified as a novel mutated gene in chronic lymphocytic leukemia (CLL), with all mutations occurring at a single hotspot (L162R), located within the DNA binding domain of the protein. Here we show that B cell-restricted conditional knock-in of this mutation skews B cells development and induces CLL-like disease in elderly mice (30% penetrance), confirming its role as a CLL driver. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL9185 GPL19057 30 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601427 Series Accession: GSE143711 ID: 200143711 1228. The effect of IFNAR1 blockade on Tfh-cell production of IL-21 and IFN-γ loci (Submitter supplied) To determine if the effect of IFNAR1 blockade on Tfh-cell production of IL-21 and IFN-γ was a consequence of altered chromatin accessibility, we used ATAC-seq to characterize their gene loci. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 7 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658366 Series Accession: GSE156575 ID: 200156575 1229. Activity-dependent regulome and transcriptome of human GABAergic neurons reveal new patterns of gene regulation and neurological disease heritability (Submitter supplied) Neuronal activity-dependent gene expression is essential for healthy brain development. Emerging studies implicate alterations in GABAergic neuronal circuits in neurodevelopmental and psychiatric disorders. We conducted an activity-dependent transcriptional and epigenetic profiling of human iPSC-derived GABAergic neurons. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 130 Samples FTP download: GEO (JPG, RDA, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA563023 Series Accession: GSE136656 ID: 200136656 1230. Mammalian SWI/SNF continuously restores local accessibility to chromatin [ATAC-Seq2] (Submitter supplied) Open chromatin is a hallmark of regulatory regions and serves as a feature for their identification. Accessible genomic sites are mediated by the activity of transcription factors (TFs) that can engage with nucleosomes to enable stable gene expression changes that underlie development. While the variability of open chromatin between tissues has been studied in large detail, we have limited knowledge on the dynamics of accessible chromatin in any given cell. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA664947 Series Accession: GSE158339 ID: 200158339 1231. Mammalian SWI/SNF continuously restores local accessibility to chromatin [ATAC-seq1] (Submitter supplied) Open chromatin is a hallmark of regulatory regions and serves as a feature for their identification. Accessible genomic sites are mediated by the activity of transcription factors (TFs) that can engage with nucleosomes to enable stable gene expression changes that underlie development. While the variability of open chromatin between tissues has been studied in large detail, we have limited knowledge on the dynamics of accessible chromatin in any given cell. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 52 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622381 Series Accession: GSE147865 ID: 200147865 1232. ecDNA hubs drive cooperative intermolecular oncogene expression (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platforms: GPL20301 GPL24676 63 Samples FTP download: GEO (HIC, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159986/ Series Accession: GSE159986 ID: 200159986 1233. An Integrated Epigenomic and Transcriptomic Map of Mouse and Human ab T Cell Development (Population ATACseq) (Submitter supplied) ab lineage T cells, most of which are CD4+ or CD8+ and recognize MHC I or MHC II-presented antigens, are essential for immune responses and develop from CD4+CD8+ thymocytes. The absence of in vitro models and the heterogeneity of ab thymocytes have hampered analyses of their intrathymic differentiation. Here, combining single-cell RNA and ATAC (chromatin accessibility) sequencing, we identified mouse and human ab thymocyte developmental trajectories. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 7 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA626653 Series Accession: GSE148975 ID: 200148975 1234. Transcription Factor GATA2 Promotes Chromatin Remodeling at the Super-Enhancers of the Key Mast Cell Identity Genes and Primes Enhancers to Respond to Antigenic Stimulation [ATAC-seq] (Submitter supplied) Mast cells are critical effectors in causing allergic inflammation and in protecting against certain parasitic infections. We previously demonstrated that transcription factors GATA2 and MITF are the mast cell lineage-determining factors (LDTFs). However, it is unclear whether these LDTFs play a role in regulating chromatin accessibility at the enhancer regions. In this study, we demonstrate that GATA2 promotes chromatin accessibility at the super-enhancers of mast cell identity genes and primes both the typical and super-enhancers at the genes that respond to antigenic stimulation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 8 Samples FTP download: GEO (BEDGRAPH, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607533 Series Accession: GSE145542 ID: 200145542 1235. An epigenetic program established by gene – environment interactions initiates pancreatic carcinogenesis [ATAC-seq] (Submitter supplied) Damaged tissues have increased risk of cancer development through poorly understood mechanisms. For example, in the pancreas, tissue damage collaborates with activating mutations in the Kras oncogene to dramatically accelerate the formation of early neoplastic lesions and, ultimately, pancreatic cancer. By integrating genomics, single-cell chromatin assays and spatiotemporally-controlled functional perturbations in autochthonous tumor models, we show that the combination of Kras mutation and tissue damage promotes a functionally relevant chromatin state in the pancreatic epithelium that distinguishes neoplastic transformation from normal regeneration and is inherited throughout malignant evolution. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 22 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548087 Series Accession: GSE132440 ID: 200132440 1236. Gene expression profiling of murine BCR-ABL+ CDK6-wt and CDK6-KO cells (Submitter supplied) Dertermination of chromatin accessibility in murine BCR-ABL+ CDK6-wt and CDK6-KO cells Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 8 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659666 Series Accession: GSE156966 ID: 200156966 1237. The nuclear envelope protein Net39 is essential for nuclear integrity, chromatin organization, and muscle growth (ATAC-Seq) (Submitter supplied) Lamins and transmembrane proteins within the nuclear envelope are regulators of nuclear structure and chromatin organization. Nuclear Envelope Transmembrane Protein 39 (Net39) is a muscle-restricted nuclear envelope protein. We show that mice lacking Net39 succumb to severe myopathy and neonatal lethality, with concomitant disruption in nuclear integrity, chromatin accessibility, gene expression and metabolism. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648004 Series Accession: GSE154847 ID: 200154847 1238. ATAC seq of Gnas mutant subcutaneous progenitor cells (Submitter supplied) The Gnas mutant mice driver by AdCre injection showed heterotopic osssification. In order to understand the underlying mechanism, we performed ATAC seq experiments from the control and Gnas mutant subcutaneous progenitor cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA680157 Series Accession: GSE161962 ID: 200161962 1239. Single Nucleus ATAC-Seq Multiomic Profiling Reveals Age-Dynamic Regulation of Host Genes Associated with SARS-CoV-2 Infection [scATAC-Seq] (Submitter supplied) Respiratory failure is the leading cause of COVID-19 death and disproportionately impacts adults more than children. Here, we present a large-scale snATAC-seq dataset (90,980 nuclei) of the human lung, generated in parallel with snRNA-seq (46,500 nuclei), from healthy donors of ~30 weeks, ~3 years and ~30 years of age. Focusing on genes implicated in SARS-CoV-2 cell entry, we observed an increase in the proportion of alveolar epithelial cells expressing ACE2 and TMPRSS2 in adult compared to young lungs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161381/ Series Accession: GSE161381 ID: 200161381 1240. The transition from quiescent to activated states in human hematopoietic stem cells is governed by dynamic 3D genome reorganization [Low-C] (Submitter supplied) Life-long blood production requires long-term hematopoietic stem cells (LT-HSC) - marked by stemness states involving quiescence and self-renewal - to transition into activated short-term HSC (ST-HSC) with reduced stemness. As few transcriptional changes underlie this transition, we used single-cell and bulk ATAC-seq on human HSC and stem/progenitor subsets (HSPC) to uncover chromatin accessibility signatures, one including LT-HSC (LT/HSPC signature) and another excluding LT-HSC (Act/HSPC signature). more... Organism: Homo sapiens Type: Other Platform: GPL16791 2 Samples FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159287/ Series Accession: GSE159287 ID: 200159287 1241. The nuclear envelope protein Net39 is essential for muscle nuclear integrity and chromatin organization (Submitter supplied) Lamins and transmembrane proteins within the nuclear envelope regulate nuclear structure and chromatin organization. Nuclear Envelope Transmembrane Protein 39 (Net39) is muscle nuclear envelope protein whose functions in vivo have not been explored. We show that mice lacking Net39 succumb to severe myopathy and juvenile lethality, with concomitant disruption in nuclear integrity, chromatin accessibility, gene expression and metabolism. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 24 Samples FTP download: GEO (BEDGRAPH, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154850/ Series Accession: GSE154850 ID: 200154850 1242. The transition from quiescent to activated states in human hematopoietic stem cells is governed by dynamic 3D genome reorganization (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL16791 24 Samples FTP download: GEO (BEDPE, HIC, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125064/ Series Accession: GSE125064 ID: 200125064 1243. The transition from quiescent to activated states in human hematopoietic stem cells is governed by dynamic 3D genome reorganization [ATAC-Seq] (Submitter supplied) We profiled chromatin accessibility in sorted hematopoietic populations. We used this to identify signatures of chromatin accessibility which discriminated LT-HSC from other hematopoietic stem and progenitor cell populations, discriminated by CTCF binding sites. We further validated this with RNA-Seq on sorted cord blood populations following shCTCF, and Hi-C and CTCF ChIP-Seq on the OCIAML-2 cell line. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 13 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125060/ Series Accession: GSE125060 ID: 200125060 1244. Integrated multiomic analysis identifies functional epigenetic signatures regulating nucleotide excision repair (ATAC-seq) (Submitter supplied) Transcription-coupled nucleotide excision repair (TC-NER) is promptly triggered by 'local' elongating RNAP II molecules encountering DNA adducts such as cyclobutane pyrimidine dimers (CPD) induced by ultraviolet light and speeds up removing and repair in transcribed loci. Genome-wide measurements have revealed a dramatic shutdown of global transcription with a few exceptions of individual genes that are consequently highly upregulated by DNA damage. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA679468 Series Accession: GSE161790 ID: 200161790 1245. Characterization of FOXA1 mutations in breast cancer (ChIP V5) (Submitter supplied) Invasive Lobular Carcinoma (ILC) is the second most frequent breast cancer (BCa) type and encompasses 10-15% of BCa cases. FOXA1 specific mutations are enriched in this subtype of BCa, however their role in breast cancer pathogenesis is still ill-defined. FOXA1, together with estrogen receptor (ER), is a key transcription factor for the correct activation of estrogen-dependent gene expression and, consequently, for mammary gland development and BCa identity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA679318 Series Accession: GSE161767 ID: 200161767 1246. Characterization of FOXA1 mutations in breast cancer (ATAC-seq KnockIn) (Submitter supplied) Invasive Lobular Carcinoma (ILC) is the second most frequent breast cancer (BCa) type and encompasses 10-15% of BCa cases. FOXA1 specific mutations are enriched in this subtype of BCa, however their role in breast cancer pathogenesis is still ill-defined. FOXA1, together with estrogen receptor (ER), is a key transcription factor for the correct activation of estrogen-dependent gene expression and, consequently, for mammary gland development and BCa identity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA679317 Series Accession: GSE161766 ID: 200161766 1247. Innate sensor Dhx9 orchestrates TCR signaling and controls CD8 T cell immunity against viral infection [ATAC-Seq] (Submitter supplied) Nuclear sensor molecules of innate cells recognize pathogenic DNA or RNA to activate innate immunity and defense against bacteria and virus infection. Although some sensors exhibit their preliminary functions in T cells, it is still unclear about the underlying mechanism. Here we found a nuclear sensor-Dhx9, was enhanced its expression in effector CD8 T cells. T cell specific deletion of Dhx9 caused an impaired CD8 T cell expansion, memory formation and virus clearance. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 4 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA679192 Series Accession: GSE161697 ID: 200161697 1248. Characterization of FOXA1 mutations in breast cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL20301 174 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134657/ Series Accession: GSE134657 ID: 200134657 1249. Characterization of FOXA1 mutations in breast cancer (RNA-seq) (Submitter supplied) Invasive Lobular Carcinoma (ILC) is the second most frequent breast cancer (BCa) type and encompasses 10-15% of BCa cases. FOXA1 specific mutations are enriched in this subtype of BCa, however their role in breast cancer pathogenesis is still ill-defined. FOXA1, together with estrogen receptor (ER), is a key transcription factor for the correct activation of estrogen-dependent gene expression and, consequently, for mammary gland development and BCa identity. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 54 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556015 Series Accession: GSE134656 ID: 200134656 1250. Characterization of FOXA1 mutations in breast cancer (ChIP-seq) (Submitter supplied) Invasive Lobular Carcinoma (ILC) is the second most frequent breast cancer (BCa) type and encompasses 10-15% of BCa cases. FOXA1 specific mutations are enriched in this subtype of BCa, however their role in breast cancer pathogenesis is still ill-defined. FOXA1, together with estrogen receptor (ER), is a key transcription factor for the correct activation of estrogen-dependent gene expression and, consequently, for mammary gland development and BCa identity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 72 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556014 Series Accession: GSE134655 ID: 200134655 1251. Characterization of FOXA1 mutations in breast cancer (ATAC-seq) (Submitter supplied) Invasive Lobular Carcinoma (ILC) is the second most frequent breast cancer (BCa) type and encompasses 10-15% of BCa cases. FOXA1 specific mutations are enriched in this subtype of BCa, however their role in breast cancer pathogenesis is still ill-defined. FOXA1, together with estrogen receptor (ER), is a key transcription factor for the correct activation of estrogen-dependent gene expression and, consequently, for mammary gland development and BCa identity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 36 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556013 Series Accession: GSE134654 ID: 200134654 1252. High dimensional association detection in large-scale genomic data (Submitter supplied) Joint analyses of genomic datasets obtained in multiple different conditions are essential for understanding the biological mechanism that drives tissue-specificity and cell differentiation, but they still remain computationally challenging. To address this we introduce CLIMB (Composite LIkelihood eMpirical Bayes), a statistical methodology that learns patterns of condition-specificity present in genomic data. more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis Platform: GPL19057 8 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA656702 Series Accession: GSE156074 ID: 200156074 1253. CRISPR-GEMM pooled mutagenic screening identifies KMT2D as a major modulator of immune checkpoint blockade (ATAC-Seq) (Submitter supplied) Immune checkpoint blockade (ICB) has shown remarkable clinical efficacy across multiple cancer types. However, only a fraction of patients respond to ICB. Here, we performed pooled mutagenic screening with CRISPR-mediated genetically engineered mouse models (CRISPR-GEMMs) in ICB settings, and identified KMT2D as a major modulator of ICB response across multiple cancer types. Kmt2d encodes a histone H3K4 methyltransferase and is among the most frequently mutated genes in cancer patients. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 12 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151226/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635151 Series Accession: GSE151226 ID: 200151226 1254. Genetically defined syngeneic mouse models of ovarian cancer as tools for the discovery of combination immunotherapy (WGS) (Submitter supplied) Purpose: There are three goals of this study of these analysis: 1. To compare the genomic, exome and chromatin accessiblity profiles of the specific engineered fallopian tube cells of high-grade serous tubo-ovarian cancer (HGSC) models (this study) using whole-exome-, whole-genome- and ATAC sequencing. Methods: Genomic DNA was extracted from the cell lines mentioned below. Conclusions: We conclude that whole-exome, whole-genome and ATAC-seq characterization would expedite genetic network analyses and permit the dissection of complex biological functions. Organism: Mus musculus Type: Other Platform: GPL19057 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA668140 Series Accession: GSE159254 ID: 200159254 1255. Genetically defined syngeneic mouse models of ovarian cancer as tools for the discovery of combination immunotherapy (Exome) (Submitter supplied) Purpose: There are three goals of this study: 1. To compare the genomic, exome and chromatin accessiblity profiles of the specific engineered fallopian tube cells of high-grade serous tubo-ovarian cancer (HGSC) models (this study) using whole-exome, whole-genome and ATAC-seq sequencing. Methods: For whole-exome analysis, genomic DNA was extracted from the cell lines mentioned below. Conclusions: We conclude that whole-exome, whole-genome and ATAC-seq characterization would expedite genetic network analyses and permit the dissection of complex biological functions. Organism: Mus musculus Type: Genome variation profiling by high throughput sequencing Platform: GPL23479 3 Samples FTP download: GEO (VCF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA668139 Series Accession: GSE159253 ID: 200159253 1256. Stromal upregulation of SOX2 promotes tumorigenesis through the generation of a SFRP1/2-expressing cancer-associated fibroblast population [ATAC-seq] (Submitter supplied) Although how CAFs impact the tumor epithelium is being progressively unveiled,  transcriptional processes of lineage plasticity in fibroblasts govern the acquisition of the CAF phenotype are much less understood. Here we show that the upregulation of SOX2 is a critical step in this process, which is negatively regulated by the atypical protein kinase (aPKC) PKCz. We demonstrate that the loss of PKCz is essential for the acquisition of the CAF phenotype and for the induction of the desmoplastic and more aggressive phenotype of intestinal tumors in a SOX2-dependent manner. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647755 Series Accession: GSE154857 ID: 200154857 1257. UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells[RNA-seq] (Submitter supplied) UTX/KDM6A is known to promote open chromatin structure to facilitate gene activation. Although UTX is important for normal and cancer development, its molecular activities in developmental gene regulation remain unclear. Using genetic knockout of UTX in human embryonic stem cells, we show that UTX promotes human pluripotency and suppresses neural differentiation. In human neural stem cells (hNSCs), UTX modulates self-renewal, is required for neuronal differentiation, and suppresses glial/astrocytic differentiation by positively and negatively regulating its target genes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platforms: GPL24676 GPL20301 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524892 Series Accession: GSE127514 ID: 200127514 1258. UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells[ChIP-seq] (Submitter supplied) UTX/KDM6A is known to promote open chromatin structure to facilitate gene activation. Although UTX is important for normal and cancer development, its molecular activities in developmental gene regulation remain unclear. Using genetic knockout of UTX in human embryonic stem cells, we show that UTX promotes human pluripotency and suppresses neural differentiation. In human neural stem cells (hNSCs), UTX modulates self-renewal, is required for neuronal differentiation, and suppresses glial/astrocytic differentiation by positively and negatively regulating its target genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL11154 GPL24676 27 Samples FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524891 Series Accession: GSE127512 ID: 200127512 1259. UTX/KDM6A suppresses AP-1 and a gliogenesis program during neural differentiation of human pluripotent stem cells[ATAC-seq] (Submitter supplied) UTX/KDM6A is known to promote open chromatin structure to facilitate gene activation. Although UTX is important for normal and cancer development, its molecular activities in developmental gene regulation remain unclear. Using genetic knockout of UTX in human embryonic stem cells, we show that UTX promotes human pluripotency and suppresses neural differentiation. In human neural stem cells (hNSCs), UTX modulates self-renewal, is required for neuronal differentiation, and suppresses glial/astrocytic differentiation by positively and negatively regulating its target genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524890 Series Accession: GSE127511 ID: 200127511 1260. SWI/SNF inhibition leads to epigenetic reprogramming in rhabdoid tumor (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL24676 27 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137404/ Series Accession: GSE137404 ID: 200137404 1261. SWI/SNF inhibition leads to epigenetic reprogramming in rhabdoid tumor [ATAC-seq] (Submitter supplied) Rhabdoid tumor is a pediatric cancer characterized by the biallelic inactivation of SMARCB1, a subunit of the SWI/SNF chromatin remodeling complex. SMARCB1 inactivation leads to SWI/SNF redistribution to favor a proliferative dedifferentiated cellular state. Although this deletion is the known oncogenic driver, SWI/SNF therapeutic targeting remains a challenge. Here we show mithramycin and a second-generation analogue EC-8042 are effective in this tumor type. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565370 Series Accession: GSE137397 ID: 200137397 1262. ZNF416 is a pivotal transcriptional regulator of fibroblast mechano-activation [ChIP-seq] (Submitter supplied) Matrix stiffness is a central regulator of fibroblast function. However, the transcriptional mechanisms linking matrix stiffness to changes in fibroblast phenotype are incompletely understood. Here, we evaluated the effect of matrix stiffness on genome-wide chromatin accessibility in freshly-isolated lung fibroblasts using ATAC-seq. We found higher matrix stiffness profoundly increased global chromatin accessibility relative to lower matrix stiffness, and these alterations were in close genomic proximity to known pro-fibrotic gene programs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678324 Series Accession: GSE161446 ID: 200161446 1263. ZNF416 is a pivotal transcriptional regulator of fibroblast mechano-activation [ATAC-seq] (Submitter supplied) Matrix stiffness is a central regulator of fibroblast function. However, the transcriptional mechanisms linking matrix stiffness to changes in fibroblast phenotype are incompletely understood. Here, we evaluated the effect of matrix stiffness on genome-wide chromatin accessibility in freshly-isolated lung fibroblasts using ATAC-seq. We found higher matrix stiffness profoundly increased global chromatin accessibility relative to lower matrix stiffness, and these alterations were in close genomic proximity to known pro-fibrotic gene programs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA678314 Series Accession: GSE161434 ID: 200161434 1264. Efficient transcription-coupled chromatin accessibility mapping in situ (Submitter supplied) Chromatin accessibility mapping is a powerful approach to identify potential regulatory elements. In the popular ATAC-seq method, Tn5 transposase inserts sequencing adapters into accessible DNA (‘tagmentation’). CUT&Tag is a tagmentation-based epigenomic profiling method in which antibody tethering of Tn5 to a chromatin epitope of interest profiles specific chromatin features in small samples and single cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 143 Samples FTP download: GEO (BED, BEDGRAPH, PDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA664814 Series Accession: GSE158327 ID: 200158327 1265. EOFAD-causing mutations in psen1 orchestrate dedifferentiation through remodeling of the chromatin landscape in hiPSC-derived neurons [ATAC-Seq] (Submitter supplied) In this work, we used an integrative, multi-omics approach and systems-level analysis to generate a mechanistic disease model for EOFAD in an hiPSC-derived neuron model system. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 15 Samples FTP download: GEO (BED, GAPPEDPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510453 Series Accession: GSE123997 ID: 200123997 1266. EOFAD-causing mutations in psen1 orchestrate dedifferentiation through remodeling of the chromatin landscape in hiPSC-derived neurons [RNA-Seq] (Submitter supplied) In this work, we used an integrative, multi-omics approach and systems-level analysis to generate a mechanistic disease model for EOFAD in an hiPSC-derived neuron model system. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 22 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510454 Series Accession: GSE123891 ID: 200123891 1267. EOFAD-causing mutations in psen1 orchestrate dedifferentiation through remodeling of the chromatin landscape in hiPSC-derived neurons [ChIP-Seq] (Submitter supplied) In this work, we used an integrative, multi-omics approach and systems-level analysis to generate a mechanistic disease model for EOFAD in an hiPSC-derived neuron model system. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 11 Samples FTP download: GEO (BED, BW, FASTQ, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510452 Series Accession: GSE123884 ID: 200123884 1268. Co-location of chromatin loop anchors with the gene transcription machinery in maize. (Submitter supplied) We report the use of ultra-high Hi-C sequencing to characterize TAD-like domains and chromatin loops in maize, along with their co-location characteristics with open chromatin (ATAC-Seq) peaks and gene expreesion (mRNA-Seq) data generated from the same tissue samples. Organism: Zea mays Type: Other Platform: GPL29401 2 Samples FTP download: GEO (BEDPE, HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647026 Series Accession: GSE161294 ID: 200161294 1269. BMP signaling: at the gate between activated melanocyte stem cells and differentiation [ATAC-seq] (Submitter supplied) Through recurrent bouts synchronous with the hair cycle, quiescent melanocyte stem cells (McSCs) become activated to generate proliferative progeny that differentiate into pigment-producing melanocytes. The signaling factors orchestrating these events remain incompletely understood. Here, we use single cell RNA-sequencing with comparative gene expression analysis to elucidate the transcriptional dynamics of McSCs through quiescence, activation, and melanocyte maturation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667929 Series Accession: GSE159193 ID: 200159193 1270. Foxp3 imparts regulatory T cell epigenetic identity through a transcription factor relay (Submitter supplied) RNA-seq, ATAC-seq, and CUT&RUN analysis in Foxp3+ regulatory T cells, Foxp3- conventional CD4 T cells and Foxp3 reporter-null cells subdivided based on cell surface activation markers CD44 and CD62L Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 115 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647187 Series Accession: GSE154680 ID: 200154680 1271. Chromatin accessibility profiling in Neurospora crassa reveals features associated with accessible and inaccessible chromatin (Submitter supplied) Background: Regulation of chromatin accessibility and transcription are tightly coordinated processes. Studies in yeast and higher eukaryotes has described accessible chromatin regions, but little work has been done in filamentous fungi. Results: Here we present a genome-scale characterization of accessible chromatin regions in Neurospora crassa, which revealed characteristic molecular features of accessible and inaccessible chromatin. more... Organism: Neurospora crassa Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20660 18 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA646493 Series Accession: GSE154497 ID: 200154497 1272. TNF induced inflammatory transcription dynamics and epigenetic changes (Submitter supplied) TNF can induce inflammatory responses in cells, including transcriptional and epigenetic changes. To investigate the long-term influence of TNF stimulation on epigenetic modifications, we did transcriptomic and epigenomic profiling of TNF-treated cells with various time length or stages. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL24676 GPL23227 58 Samples FTP download: GEO (BIGWIG, COV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638409 Series Accession: GSE152146 ID: 200152146 1273. ATAC-seq analyses to study chromatin state after overexpression of BAZ2B in lineage-committed human hematopoietic progenitors (Submitter supplied) We demonstrated that the overexpression of BAZ2B in human lineage-committed progenitors lead to an induction of reprogramming to a multipotent hematopoietic stem cell state. To understand the mechanism we overexpressed Luciferase or BAZ2B in lineage-committed progenitors for 14 days and performed the ATAC-seq experiments Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA636674 Series Accession: GSE151634 ID: 200151634 1274. Effect of BET Inhibitors on Rheumatoid Synovial Fibroblast Cells [ATAC-seq] (Submitter supplied) We demonstrate that JQ1 inhibits IL1B based RA Synovial Fibroblast activation and proliferation, by inhibiting key BRD2/4 superenhancer genes. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 26 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA624144 Series Accession: GSE148403 ID: 200148403 1275. Genome-wide maps of chromatin state(ATAC-seq) and gene expression(RNA-seq) of cold exposed Dot1L-ablated mouse brown adipose tissue (Submitter supplied) Using high throughput sequencing we report chromatin accessibility(ATAC-seq) and transcriptome profiling (RNA-seq)and in mouse brown adipose tissue (BAT) upon cold exposure in wildtype and Dot1L-BAT specific KO mice. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA669895 Series Accession: GSE159645 ID: 200159645 1276. Transcriptome and epigenomics characteristics of LPS induced CD127 expressing human monocytes (Submitter supplied) We performed the transcriptomic and epigenetic analysis for both CD127high and CD127low monocytes under LPS stimulation, and RNA-seq and ATAC-seq were performed accordingly for this purpose. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20795 GPL23227 12 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667719 Series Accession: GSE159118 ID: 200159118 1277. Huntington’s disease as a lamin B1 nuclear envelopathy (Submitter supplied) Lamins, the major structural proteins within the nuclear lamina, are crucial for the functionality of cellular nucleus and their alterations are involved in the so-called laminopathies. We previously found that Huntington’s disease (HD), a hereditary neurodegenerative disorder caused by an expansion of a CAG repeat in the huntingtin (htt) gene, courses with increased lamin B protein levels in specific brain regions in both mouse models and patients. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 60 Samples FTP download: GEO (BED, BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587460 Series Accession: GSE139884 ID: 200139884 1278. Histone methyltransferase G9a governs the mutant Kras-driven pancreatic carcinogenesis (Submitter supplied) ATAC-seq of mouse pancreas organoids (K,KC,KC+UNC) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635814 Series Accession: GSE151434 ID: 200151434 1279. Chromatin accessibility analysis uncovers TFAP2A as a regulator on pro-angiogenesis of acquired resistance to anlotinib (Submitter supplied) Anlotinib, a multitarget agent a multi-target agent that inhibits tumor proliferation and angiogenesis, has been demonstrated to be effective for non-small cell lung cancer (NSCLC) at third-line or over third-line. However, the underlying mechanisms of anlotinib acquired-resistance is still unclear. Here we performed chromatin accessibility profiling on anlotinib-resistant NCI-H1975 and wild-type NCI-H1975. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 8 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA595696 Series Accession: GSE142031 ID: 200142031 1280. Terminal B cell differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL20301 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136990/ Series Accession: GSE136990 ID: 200136990 1281. Chromatin accessibility profiling of terminal B cell differentiation [ATAC-Seq] (Submitter supplied) The terminal differentiation of B cells into antibody-secreting cells (ASCs) is a critical component of adaptive immune responses. Using our in vitro differentiation system, we combined RNA sequencing with ATAC-seq to characterize genomic events driving the ASC differentiation of human primary naive B cells. After an initial response to IL-4, cells that committed to an ASC fate downregulated the CD23 marker and IL-4 signaling, whereas cells that maintained IL-4 signaling did not differentiate. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564230 Series Accession: GSE136989 ID: 200136989 1282. Expression profiling of terminal B cell differentiation [RNA-Seq] (Submitter supplied) The terminal differentiation of B cells into antibody-secreting cells (ASCs) is a critical component of adaptive immune responses. Using our in vitro differentiation system, we combined RNA sequencing with ATAC-seq to characterize genomic events driving the ASC differentiation of human primary naive B cells. After an initial response to IL-4, cells that committed to an ASC fate downregulated the CD23 marker and IL-4 signaling, whereas cells that maintained IL-4 signaling did not differentiate. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564229 Series Accession: GSE136988 ID: 200136988 1283. Nuclear peripheral chromatin-lamin B1 interaction is required for global integrity of chromatin architecture and dynamics in human cells (Submitter supplied) Background: The eukaryotic genome is folded into higher-order conformation accompanied with constrained dynamics for coordinated genome functions. However, the molecular machinery underlying these hierarchically organized three-dimensional (3D) chromatin architecture and dynamics remains poorly understood. Results: Here by combining imaging and sequencing, we studied the role of lamin B1 in chromatin architecture and dynamics. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20795 GPL24676 20 Samples FTP download: GEO (BED, BW, MATRIX, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511977 Series Accession: GSE124409 ID: 200124409 1284. Scalable pooled CRISPR screens with single cell chromatin accessibility profiling. (Submitter supplied) A scalable, cost-effective method that combines CRISPR perturbations with a single-cell indexing assay for transposase-accessible chromatin (CRISPR-sciATAC). This method links genome-wide chromatin accessibility to genetic perturbations through simultaneous capture of ATAC-seq fragments and CRISPR guide RNAs from single cells using a 96-well plate combinatorial indexing approach. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19969 GPL15520 GPL16791 6 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE161nnn/GSE161002/ Series Accession: GSE161002 ID: 200161002 1285. Atg7-dependent autophagy regulates the naive to primed transition by selective Nanog degradation in mouse embryonic stem cells  (Submitter supplied) Autophagy is a conserved cellular mechanism to degrade unwanted cytoplasmic proteins and organelles to recycle their components, and it is proved to be critical for embryonic stem cell (ESC) self-renewal and somatic cell reprogramming. However, the role of autophagy in embryonic development remains elusive, and no information exists regarding its functions during the transition from naive to primed pluripotency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA675032 Series Accession: GSE160976 ID: 200160976 1286. Brd2/4 and Myc regulate alternative cell lineage programs during early osteoclast development (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 75 Samples FTP download: GEO (BED, BROADPEAK, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160840/ Series Accession: GSE160840 ID: 200160840 1287. Brd2/4 and Myc regulate alternative cell lineage programs during early osteoclast development [ATAC-seq] (Submitter supplied) Osteoclast development in response to RANKL is critical for bone homeostasis in health and in disease e.g., osteoporosis and cancer. The early and direct chromatin regulatory changes imparted by BET proteins Brd2-4 and osteoclast-affiliated transcription factors (TF) during osteoclastogenesis are not known. Here we show that as early as 4h post-RANKL, osteoclast development entails regulation of two alternative cell fate transcriptional programs, osteoclast vs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 7 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160835/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA674619 Series Accession: GSE160835 ID: 200160835 1288. TINC - a method to dissect transcriptional complexes at single locus resolution - reveals novel Nanog regulators in mouse embryonic stem cells (Submitter supplied) We developed a novel epigenetic method termed TINC: TALE-mediated Isolation of Nuclear Chromatin. Using TINC we interrogated the protein complex formed at the Nanog promoter in embryonic stem cells (ESCs) and identified many known interactors as well as numerous previously unknown complex members, including RCOR2. Further interrogation of the role of RCOR2 in the ESC network revealed its involvement in the repression of lineage genes and the fine-tuning of pluripotency genes. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL21626 14 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA674588 Series Accession: GSE160816 ID: 200160816 1289. Metabolic Effects of Air Pollution Exposure and Reversibility   (Submitter supplied) In this study, we modeled early life air pollution exposure using C57BL/6J male mice on a controlled chow diet, exposed to real-world inhaled concentrated PM2.5 (~10x ambient level/ ~60-120g/m3) or filtered air (FA) over 14 weeks.  We investigated PM2.5 effects on phenotype, transcriptome and chromatin accessibility, compared the effects with a prototypical high-fat diet (HFD) stimulus, and examined the effects of cessation of exposure on reversibility of phenotype/genotype.  Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 94 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608484 Series Accession: GSE145840 ID: 200145840 1290. Enhanced efficacy of simultaneous PD-1 and PD-L1 immune checkpoint blockade in high grade serous ovarian cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 44 Samples FTP download: GEO (BW, CSV, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160755/ Series Accession: GSE160755 ID: 200160755 1291. Enhanced efficacy of simultaneous PD-1 and PD-L1 immune checkpoint blockade in high grade serous ovarian cancer [ATAC-seq] (Submitter supplied) Immune therapies have had limited efficacy in high grade serous ovarian cancer (HGSC). The cellular targets and mechanism(s) of action of these agents in HGSC are unknown. Here we performed immune functional and single cell RNA sequencing transcriptional profiling on novel HGSC organoid/immune cell co-cultures treated with a variety of immune checkpoint blockade (ICB) antibodies compared to controls. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160750/ Series Accession: GSE160750 ID: 200160750 1292. Examination of genomic accessibility in embryonic thymus cell populations by ATAC-seq (Submitter supplied) ILC2 contribute to immune homeostasis, protective immunity and tissue repair. However, an understanding of the microenvironmental factors and transcriptional circuits that support development of these innate lymphocytes within lymphoid organs, alongside their adaptive T and B cell relatives, is only starting to emerge. Here we demonstrate that functional ILC2 arise in the embryonic thymus, from shared T cell precursors, and precede the emergence of CD4+CD8+ (double-positive) T cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 16 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA611790 Series Accession: GSE146744 ID: 200146744 1293. Linkage-specific deubiquitylation by OTUD5 defines an embryonic pathway intolerant to genomic variation [ATAC-Seq] (Submitter supplied) Reversible modification of proteins with linkage-specific ubiquitin chains is critical for intracellular signaling. Yet, information on physiological roles and underlying signaling mechanisms of particular ubiquitin linkages during human development are limited. Here, relying on genomic constraint scores, we identify 10 patients with a novel multiple congenital anomaly disorder caused by hemizygous variants in OTUD5, encoding a K48-/K63-linkage-specific deubiquitylase. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673703 Series Accession: GSE160588 ID: 200160588 1294. Modelling erythropoiesis in congenital dyserythropoietic anaemia type I (CDA-I) for diagnosis and molecular dissection. (Submitter supplied) Congenital Dyserythropoietic Anaemia type 1 (CDA-I) is an inherited anaemia arising primarily from mutations in C15orf41 and CDAN1, however the molecular mechanisms that cause the disease remain to be fully elucidated. We use an in vitro culture system to study multiple stages of erythropoiesis from CD34+ progenitors of patients with CDA-I. Applying a number of techniques, including ATAC-seq, we show that differentiation of CDA-I patient erythroblasts closely matches that of healthy donors during the early and intermediate stages of erythroid differentiation and maturation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 32 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA515475 Series Accession: GSE125175 ID: 200125175 1295. Dual DNA/protein tagging of open chromatin unveils dynamics of epigenomic landscapes in leukemia (ATAC-Seq) (Submitter supplied) The architecture of chromatin specifies eukaryotic cell identity by controlling transcription factor access to sites of gene regulation. Here we describe a dual transposase/peroxidase approach, integrative DNA And Protein Tagging (iDAPT), which detects both DNA (iDAPT-seq) and protein (iDAPT-MS) associated with accessible regions of chromatin. In addition to direct identification of bound transcription factors, iDAPT enables the inference of their gene regulatory networks, protein interactors, and regulation of chromatin accessibility. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 23 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA664953 Series Accession: GSE158346 ID: 200158346 1296. The T-box Transcription Factor Eomesodermin Governs Hemogenic Competence of Yolk Sac Mesodermal Progenitors [RNA-Seq] (Submitter supplied) Extra-embryonic mesoderm (ExM), the earliest cells that traverse through the primitive streak, give rise to the endothelium as well as hematopoietic progenitors in the developing yolk-sac (YS). How a specific subset of ExM becomes committed to a hematopoietic fate remains unclear. Here we report that Eomesodermin (Eomes), a T-box transcription factor, is transiently expressed in ExM progenitors that generate virtually all YS hematopoietic and endothelial cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA588241 Series Accession: GSE140091 ID: 200140091 1297. The T-box Transcription Factor Eomesodermin Governs Hemogenic Competence of Yolk Sac Mesodermal Progenitors [scRNA-Seq] (Submitter supplied) Extra-embryonic mesoderm (ExM), the earliest cells that traverse through the primitive streak, give rise to the endothelium as well as hematopoietic progenitors in the developing yolk-sac (YS). How a specific subset of ExM becomes committed to a hematopoietic fate remains unclear. Here we report that Eomesodermin (Eomes), a T-box transcription factor, is transiently expressed in ExM progenitors that generate virtually all YS hematopoietic and endothelial cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA588345 Series Accession: GSE140061 ID: 200140061 1298. The T-box Transcription Factor Eomesodermin Governs Hemogenic Competence of Yolk Sac Mesodermal Progenitors [ChIP-Seq] (Submitter supplied) Extra-embryonic mesoderm (ExM), the earliest cells that traverse through the primitive streak, give rise to the endothelium as well as hematopoietic progenitors in the developing yolk-sac (YS). How a specific subset of ExM becomes committed to a hematopoietic fate remains unclear. Here we report that Eomesodermin (Eomes), a T-box transcription factor, is transiently expressed in ExM progenitors that generate virtually all YS hematopoietic and endothelial cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587985 Series Accession: GSE140000 ID: 200140000 1299. The T-box Transcription Factor Eomesodermin Governs Hemogenic Competence of Yolk Sac Mesodermal Progenitors [ATAC-Seq] (Submitter supplied) Extra-embryonic mesoderm (ExM), the earliest cells that traverse through the primitive streak, give rise to the endothelium as well as hematopoietic progenitors in the developing yolk-sac (YS). How a specific subset of ExM becomes committed to a hematopoietic fate remains unclear. Here we report that Eomesodermin (Eomes), a T-box transcription factor, is transiently expressed in ExM progenitors that generate virtually all YS hematopoietic and endothelial cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 7 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA588505 Series Accession: GSE139998 ID: 200139998 1300. ATAC-seq analysis of murine thymic iNKT subsets from C57BL/6 mice and Hivep3-deficient mice (Submitter supplied) ATAC-seq analysis of murine thymic iNKT subsets from two independent C57BL/6 mice and two independent Hivep3-deficient mice Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 12 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673423 Series Accession: GSE160518 ID: 200160518 1301. Dual DNA/protein tagging of open chromatin unveils dynamics of epigenomic landscapes in leukemia (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 29 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158350/ Series Accession: GSE158350 ID: 200158350 1302. ATAC-seq studies of Rhinovirus Response in asthma cases and non-asthma controls (Submitter supplied) There is a life-long relationship between rhinovirus (RV) infection and the development and clinical manifestations of asthma. In this study we demonstrate that cultured primary bronchial epithelial cells from adults with asthma (n = 9) show different transcriptional and chromatin responses to RV infection compared to those without asthma (n = 9). Both the number and magnitude of transcriptional and chromatin responses to RV were muted in cells from asthma cases compared to controls. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 106 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA664883 Series Accession: GSE152548 ID: 200152548 1303. Induction of adult cardiomyocyte renewal by Klf1 (Submitter supplied) In highly regenerative animals, cardiac regeneration occurs innately through cardiomyocyte dedifferentiation and proliferation, although the regenerative mechanisms remain unclear. This project contains processed data sets that were used to identify that klf1, a Kruppel-like transcription factor essential for red blood cell development, is also necessary and sufficient in the myocardium for the induction of cardiomyocyte dedifferentiation and proliferation in adult zebrafish hearts. more... Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 35 Samples FTP download: GEO (BEDGRAPH, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551130 Series Accession: GSE152531 ID: 200152531 1304. Muscle progenitor specification and myogenic differentiation are associated with changes in chromatin topology. (Submitter supplied) Using Hi-C, promoter-capture Hi-C (pCHi-C), and other genome-wide approaches in inducible Pax7-expressing skeletal muscle progenitors that inducibly express a master transcription factor, Pax7, we systematically characterized at high-resolution the spatio-temporal re-organization of compartments and promoter-anchored interactions as a consequence of myogenic commitment and differentiation. We identified key promoter-enhancer interaction motifs, namely, cliques and networks, and interactions that were dependent on Pax7 binding. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL17021 GPL19057 26 Samples FTP download: GEO (BIGWIG, NARROWPEAK, RDS, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633082 Series Accession: GSE150638 ID: 200150638 1305. Genome-wide maps of chromatin state in renin cells [ATAC-Seq] (Submitter supplied) ATAC-seq was performed to identify open chromatin regions in juxtaglomerular cells, cells isolated from acutely and chronically recruited mice and in As4.1 cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA483025 Series Accession: GSE117721 ID: 200117721 1306. Chromosomal loop engineering in human beta globin locus (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL20301 25 Samples FTP download: GEO (BW, CSV, HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160425/ Series Accession: GSE160425 ID: 200160425 1307. Chromosomal loop engineering in human beta globin locus (ATAC-Seq) (Submitter supplied) We have engineered the 3 prime HS1 CTCF binding site at the human beta globin gene locus in HUDEP-2 cells and performed RNA-seq/ChIP-seq/ATAC-seq as well as HiC and capture HiC to dissect its potential in regulating gene expression Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 5 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673299 Series Accession: GSE160421 ID: 200160421 1308. Control of neurogenic competence in mammalian hypothalamic tanycytes [RNA-seq] (Submitter supplied) Hypothalamic tanycytes, radial glial cells that share many features with neuronal progenitors, can generate small numbers of neurons in the postnatal hypothalamus, but the identity of these neurons and the molecular mechanisms that control tanycyte-derived neurogenesis are unknown. We report that tanycyte-specific disruption of the NFI family of transcription factors (Nfia/b/x) stimulates proliferation and tanycyte-derived neurogenesis. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 7 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673311 Series Accession: GSE160377 ID: 200160377 1309. Control of neurogenic competence in mammalian hypothalamic tanycytes [ATAC-seq] (Submitter supplied) Hypothalamic tanycytes, radial glial cells that share many features with neuronal progenitors, can generate small numbers of neurons in the postnatal hypothalamus, but the identity of these neurons and the molecular mechanisms that control tanycyte-derived neurogenesis are unknown. We report that tanycyte-specific disruption of the NFI family of transcription factors (Nfia/b/x) stimulates proliferation and tanycyte-derived neurogenesis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (MTX, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE160nnn/GSE160375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA673310 Series Accession: GSE160375 ID: 200160375 1310. ATAC-sequencing data for 923 enhancer deletion newborn mouse keratinocytes (Submitter supplied) We examined the ATAC-seq chromatin profiles of epidermis from newborn CRISPR-edited mice that have the 923 enhancer located within the Epidermial Differentiation Complex deleted. We examined two independent deletion lines, 923del and 923large, homozygous mutants, as well as wild type mice. We find overall there are not many differences in chromatin accessibility upon the loss of the 923 enhancer, though there are a few peaks of less accessible DNA within the EDC and more accessible DNA just outside the EDC. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21493 10 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667800 Series Accession: GSE158868 ID: 200158868 1311. The next-generation RNA and ATAC sequencing of MLL-ENL transformed cell lines reveals that C/EBP transcription factors coordinate the expression of the MLL-ENL/Hoxa target genes [ATAC-seq] (Submitter supplied) We report the application of next-generation RNA and ATAC sequencing technology for high-throughput profiling of MLL-ENL transformed cell lines. According to our results, the C/EBP transcription factors coordinate the expression of the MLL-ENL/Hoxa target genes. Genetic removal of both Cebpa and Cebpb revealed a surrogate function of C/EBPε for myeloid MLL-ENL transformation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA643501 Series Accession: GSE153623 ID: 200153623 1312. Acute CD8+ T cell responses to viral infection harbor Tcf1-dependent stem-like cells that quantitatively yield central memory [ATAC-seq] (Submitter supplied) Central memory CD8+ T cells (TCM) can protect from secondary pathogen infection, from chronic infection and cancer as a result of their stem cell-like properties. However, the developmental origin of central memory cells and consequently the basis of their stemness have not been resolved. By monitoring the expression of the transcription factor Tcf1 (Tcf7), which is essential for central memory formation, we identified a small subset of CD8+ T cells present during the acute response to primary infection. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603535 Series Accession: GSE144382 ID: 200144382 1313. FoxO maintains a genuine quiescent muscle stem-cell state until geriatric age (RNA-seq) (Submitter supplied) We identify two quiescent stem-cell states through relative CD34 expression: CD34High, with stemness properties (genuine state), and CD34Low, more committed to myogenic differentiation (primed state). The genuine-quiescent state is preserved into later life succumbing only in extreme old age due to acquisition of primed-state traits. We identified niche-derived IGF1-dependent Akt activation as detrimental to the genuine stem-cell state by imposing primed-state features via FoxO inhibition. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL17021 GPL24247 119 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661759 Series Accession: GSE157562 ID: 200157562 1314. FoxO maintains a genuine quiescent muscle stem-cell state until geriatric age (ATAC-seq) (Submitter supplied) We identify two quiescent stem-cell states through relative CD34 expression: CD34High, with stemness properties (genuine state), and CD34Low, more committed to myogenic differentiation (primed state). The genuine-quiescent state is preserved into later life succumbing only in extreme old age due to acquisition of primed-state traits. We identified niche-derived IGF1-dependent Akt activation as detrimental to the genuine stem-cell state by imposing primed-state features via FoxO inhibition. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 26 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA650532 Series Accession: GSE155642 ID: 200155642 1315. Chromatin response to hypoxia in MCF7 cells (Submitter supplied) Oxygen is essential for cell growth, however in tumours quick growth can cause hypoxic conditions. To determine the changes in the chromatin landscape in response to hypoxia in breast cancer we have performed ATAC-seq dugin normoxia and hypoxia. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 11 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551124 Series Accession: GSE133327 ID: 200133327 1316. Integrative omics analyses reveal epigenetic memory in diabetic cells regulating genes associated with kidney dysfunction. [sequencing] (Submitter supplied) We report novel epigenetic mechanisms of epigenetic memory and its role in regulation of transporter genes in diabetic renal proximal tubules. We have generated RNA-seq, ATAC-seq and Infinium EPIC methylation array datasets from human primary proximal tubule epithelial cells from non-diabetic healthy controls and from patients with history of Type II Diabetes. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 24 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608119 Series Accession: GSE145746 ID: 200145746 1317. Integrative omics analyses reveal epigenetic memory in diabetic cells regulating genes associated with kidney dysfunction. [microarray] (Submitter supplied) We report novel epigenetic mechanisms of epigenetic memory and its role in regulation of transporter genes in diabetic renal proximal tubules. We have generated RNA-seq, ATAC-seq and Infinium EPIC methylation array datasets from human primary proximal tubule epithelial cells from non-diabetic healthy controls and from patients with history of Type II Diabetes. Analyses of RNA-seq, ATAC-seq and Methylaiton EPIC array data. Organism: Homo sapiens Type: Methylation profiling by array Platform: GPL23976 24 Samples FTP download: GEO (CSV, IDAT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145745/ Series Accession: GSE145745 ID: 200145745 1318. Rapid remodeling of poised chromatin landscapes and transcription factor repurposing facilitate gene induction in natural killer cells (Submitter supplied) Innate immune responses rely on rapid and precise orchestration of gene regulation mediated by accessibility of regulatory regions to key transcription factors. However, the extent to which acute activation alters accessibility and the roles of distinct classes of transcription factors in this process are unsatisfactorily understood. Here, we investigated and integrated epigenomic modifications and transcriptomic changes occurring upon activation of natural killer (NK) cells. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21493 GPL13112 81 Samples FTP download: GEO (BW, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA606695 Series Accession: GSE145299 ID: 200145299 1319. G9a plays distinct roles in maintaining DNA methylation, retrotransposon silencing and chromatin looping (Submitter supplied) G9a is a lysine methyltransferase that regulates epigenetic modifications, transcription and genome organization. However, whether these properties are dependent on one another or represent distinct functions of G9a remains unclear. In this study, we observe widespread DNA methylation loss in G9a depleted and catalytic mutant embryonic stem cells. Furthermore, we define how G9a regulates chromatin accessibility, epigenetic modifications and transcriptional silencing in both catalytic dependent and independent manners. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other Platform: GPL19057 130 Samples FTP download: GEO (BW, HIC, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA574621 Series Accession: GSE138102 ID: 200138102 1320. Activation of clustered IFNγ target genes drives cohesin-controlled transcriptional memory (Submitter supplied) Cytokine activation of cells induces gene networks involved in inflammation and immunity. Transient gene activation can have a lasting impact even in the absence of ongoing transcription, known as long-term transcriptional memory. Here we explore the nature of the establishment and maintenance of IFNγ-induced priming of human cells. We find that while both ongoing transcription and local chromatin signatures are short-lived, the IFNγ-primed state stably propagates through at least 14 cell division cycles. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL18573 364 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150199/ Series Accession: GSE150199 ID: 200150199 1321. Activation of clustered IFNγ target genes drives cohesin-controlled transcriptional memory [ATAC-seq] (Submitter supplied) Cytokine activation of cells induces gene networks involved in inflammation and immunity. Transient gene activation can have a lasting impact even in the absence of ongoing transcription, known as long-term transcriptional memory. Here we explore the nature of the establishment and maintenance of IFNγ-induced priming of human cells. We find that while both ongoing transcription and local chromatin signatures are short-lived, the IFNγ-primed state stably propagates through at least 14 cell division cycles. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 5 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631497 Series Accession: GSE150194 ID: 200150194 1322. Loss of Maenli lncRNA expression causes engrailed-1 dependent congenital limb malformations [ATAC-seq] (Submitter supplied) Long non-coding RNAs (lncRNAs) can be important components in gene regulatory networks1, but we are only beginning to understand the nature and extent of their involvement in human Mendelian disease. Here we show that deletions of an unannotated lncRNA locus on human chromosome 2 cause a severe congenital limb malformation. Using exome sequencing and array CGH, we identified homozygous 27-63 kb deletions located 300 kb upstream of the engrailed-1 (EN1) gene in patients with a complex limb malformation, featuring mesomelic shortening, syndactyly, and ventral nails (dorsal dimelia). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565201 Series Accession: GSE137330 ID: 200137330 1323. Regulatory landscape of human stem cell-derived sinoatrial node-like pacemaker cells and ventricle-like cells (Submitter supplied) ATAC-seq revealed multiple pacemaker cell-specific accessible regions in the genome of pacemaker-like cells Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA609115 Series Accession: GSE146044 ID: 200146044 1324. Integrative single-cell chromatin and transcriptome profiling uncovers cell-type specific regulatory interactions (Submitter supplied) Simultaneous measurement of different molecular aspects of gene regulation can help infer functional relationships between genome regulation and gene expression, and understand their distinct and contribution to cell phenotype. Here, we present SHARE-seq, a highly scalable, sensitive, and cost-effective approach for joint measurement of chromatin accessibility and gene expression from the same single cells. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 20 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA588784 Series Accession: GSE140203 ID: 200140203 1325. Persistent STAT5 activation reprograms the epigenetic landscape in CD4+ T cells to drive polyfunctionality and antitumor immunity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21493 20 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152242/ Series Accession: GSE152242 ID: 200152242 1326. Persistent STAT5 activation reprograms the epigenetic landscape in CD4+ T cells to drive polyfunctionality and antitumor immunity [ATAC-Seq] (Submitter supplied) We report here that persistent activation of signal transducer and activator of transcription 5 (STAT5) in tumor-specific CD4+ T cells drives the development of polyfunctional T cells with superior antitumor activities. We showed that ectopic expression of a constitutively active form of murine STAT5A (CASTAT5) in tumor-specific CD4+ T cells established a distinct epigenetic and transcriptional landscape, endowing CD4+ T cells polyfunctionality, exhaustion-resistance and tumor-infiltrating capability. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638676 Series Accession: GSE152240 ID: 200152240 1327. iMEF SDHC-loss stable line histone acetyltransferase inhibitor ATAC-seq (Submitter supplied) We have developed a tet-inducible SV-40 large T antigen-expressing lentivirus-immortalized mouse embryonic fibroblast (iMEF) cell culture model of mitochondrial electron transport chain (ETC) dysfunction involving complex II (succinate dehydrogenase; SDH) in which silencing gene rearrangement of the Sdhc floxed allele is driven by doxycycline-dependent expression of cre-recombinase from a tet-inducible promoter (R26M2rtTA/+;TetOcre;Sdhcfl/fl). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608135 Series Accession: GSE145754 ID: 200145754 1328. iMEF SDHC-loss stable line ATAC-seq (Submitter supplied) We have developed a tet-inducible SV-40 large T antigen-expressing lentivirus-immortalized mouse embryonic fibroblast (iMEF) cell culture model of mitochondrial electron transport chain (ETC) dysfunction involving complex II (succinate dehydrogenase; SDH) in which silencing gene rearrangement of the Sdhc floxed allele is driven by doxycycline-dependent expression of cre-recombinase from a tet-inducible promoter (R26M2rtTA/+;TetOcre;Sdhcfl/fl). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA533325 Series Accession: GSE129953 ID: 200129953 1329. Genome-wide analysis of chromatin accessibility in human tonsillar B cell subsets (Submitter supplied) We performed ATAC-Seq on three freshly dissociated human tonsils sorted to purity into the following B-cell subsets: CD19+ naïve (IgD+/CD38-), memory (IgD-/CD38-), germinal center light zone (IgD-/CD38mid/CD83+/CXCR4lo), germinal center dark zone (IgD-/CD38mid/CD83lo/CXCR4hi), and plasma cells (IgD-/CD38hi). We used these data to derive differentially accessible sites between B-cell subsets and relative to EBV-immortalized B cell lines (LCLs). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 15 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA670172 Series Accession: GSE159673 ID: 200159673 1330. Endothelial GATA4 controls liver fibrosis and regeneration by preventing a pathogenic switch in angiocrine signaling [ATAC-seq] (Submitter supplied) Angiocrine signaling by liver sinusoidal endothelial cells (LSEC) regulates liver functions such as liver growth, metabolic maturation, and regeneration. Recently, we identified GATA4 as the master regulator of LSEC specification during development. Here, we studied endothelial GATA4 in the adult liver and in hepatic disease pathogenesis. We generated adult Clec4g-icretg/0xGata4fl/fl (Gata4LSEC KO) mice with deficiency of Gata4 in LSEC. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647800 Series Accession: GSE154824 ID: 200154824 1331. Non-Canonical Targets of HIF1a Impair Oligodendrocyte Progenitor Cell Function [ATAC-seq] (Submitter supplied) Mammalian cells respond to insufficient oxygen through transcriptional regulators called hypoxia-inducible factors (HIFs). Although transiently protective, prolonged HIF activity drives distinct pathological responses in different tissues. Using a model of chronic HIF1a accumulation in pluripotent-stem-cell-derived oligodendrocyte progenitors (OPCs), we demonstrate that HIF1a activates non-canonical targets to impair generation of oligodendrocytes from OPCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA649534 Series Accession: GSE155366 ID: 200155366 1332. Non-Canonical Targets of HIF1a Impair Oligodendrocyte Progenitor Cell Function (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 45 Samples FTP download: GEO (BROADPEAK, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143474/ Series Accession: GSE143474 ID: 200143474 1333. Cell-type specific epigenetic regulome in Systemic Sclerosis skin (Submitter supplied) Skin systemic sclerosis (Scleroderma, SSc) is an autoimmune disease while its epigenetic regulatory mechanism is not known. We surveyed the genome-wide active regulatory elements in fresh human skin cells, using Assay of Transposase Accessible Chromatin with sequencing (ATAC-seq) in longitudinal skin from healthy volunteers and affected and unaffected skin from patients with SSc. We created robust pipelines that enable accurate single molecule counting and allelic discrimination from clinical material in vivo without clonal expansion. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 57 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA389321 Series Accession: GSE99702 ID: 200099702 1334. Tcf1 and Lef1 regulate follicular helper T cell function eliciated by vaccination (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL13112 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146428/ Series Accession: GSE146428 ID: 200146428 1335. Tcf1 and Lef1 regulate follicular helper T cell function eliciated by vaccination [ATAC-Seq] (Submitter supplied) The goal of this study is to determine the impact of Tcf1 and Lef1 deficiency on T follicular helper (Tfh) cells elicited by protein immunization. We demonstrate that although phenotypic Tcf1/Lef1-deficient Tfh cells were able to develop in response to vaccination, they are functionally impaired. Mechanisc studies reveal the direct regulatory effect by Tcf1 and Lef1 on transcriptome and chromatin accessibility in vaccine-elicited Tfh cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA610554 Series Accession: GSE146421 ID: 200146421 1336. Humanizing the Yeast Origin Recognition Complex (Submitter supplied) The evolutionarily conserved Origin Recognition Complex (ORC), plays a key role in origin selection in eukaryotes. However, ORC is strikingly divergent in its DNA binding specificity, ranging from base-specific interactions in Saccharomyces cerevisiae to base-agnostic interactions in humans. The mechanisms underlying this distinct selectivity is unknown. Atomic model of the yeast ORC showed that base-specific interaction with the invariant thymines of the ARS consensus sequence (ACS) is encoded by a 19-amino acid insertion helix (IH) embedded in the winged helix domain (WHD) of Orc4. more... Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19756 10 Samples FTP download: GEO (BED, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627487 Series Accession: GSE149163 ID: 200149163 1337. A discrete subset of epigenetically primed human NK cells mediates antigen-specific immune responses (Submitter supplied) Adaptive features of natural killer (NK) cells have been reported in various species with different underlying mechanisms. It is unclear, however, which NK cell populations are capable of mounting antigen-specific recall responses, and how such functions are regulated at the molecular level. Here we identify and characterize a discrete population of CD49a+CD16- NK cells in the human liver that display increased epigenetic potential to elicit memory responses and has the functional properties to exert antigen-specific immunity on the skin as an effector site. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21290 47 Samples FTP download: GEO (BED, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158485/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA665413 Series Accession: GSE158485 ID: 200158485 1338. Genome-wide Chromatin Accessibility and Sequencing of HPEKs (Submitter supplied) We report ATAC-seq (Assay for Transposase-Accessible Chromatin) on HPEKs treated in culture for 6h and 48h (6h+42h wash-out) with either 125nM NVS-BET1, 125nM NVS-BET2, or 0.0125% DMSO as control in triplicate per condition. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 18 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554676 Series Accession: GSE134306 ID: 200134306 1339. H3 K27M and EZHIP impede H3K27-methylation spreading by inhibing allosterically stimulated PRC2 [S2_ATAC] (Submitter supplied) In this study, we report that EZHIP and H3 K27M preferentially interact with an allosterically activated form of PRC2 in vivo. The formation of H3 K27M- and EZHIP-PRC2 complexes occurs at CpG islands containing H3K27me3 and impedes PRC2 and H3K27me3 spreading. Moreover, we find that H3 K27M inhibits PRC2 in trans and can reduce H3K27me3 levels independent of chromatin incorporation. While EZHIP is not found outside of placental mammals, we find that expression of human EZHIP reduces H3K27me3 in Drosophila melanogaster through a conserved molecular mechanism. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25244 2 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637936 Series Accession: GSE151981 ID: 200151981 1340. Epigenetic Profiling of Cardiac Pacemaker Cells Reveals a Conserved Isl1 Enhancer That Regulates Sinoatrial Node Development and Function (Submitter supplied) Cardiac pacemaker cells (PCs) in the sinoatrial node (SAN) have a distinct gene expression program that allows them to fire automatically and initiate the heartbeat. Although critical SAN transcription factors, including Isl1, have been identified, the cis-regulatory architecture that governs PC-specific gene expression is not understood, and discrete enhancers required for gene regulation in the SAN have not been identified. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL21103 13 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA624859 Series Accession: GSE148515 ID: 200148515 1341. Calcium Signaling Prompts NIPBL Recruitment at Active Enhancers and Promoters via Distinct Mechanisms to Reconstruct Genome Compartmentalization (Submitter supplied) During developmental progression the genomes of immune cells undergo large-scale changes in chromatin folding. However, insights into the signals and epigenetics that induce alterations in nuclear architecture remain rudimentary. Here, we found that calcium influx rapidly recruited the cohesin-loading factor NIPBL to thousands of binding sites to dictate widespread changes in compartment segregation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other 4 related Platforms 165 Samples FTP download: GEO (BEDGRAPH, BW, HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644932 Series Accession: GSE154051 ID: 200154051 1342. The mole genome reveals regulatory rearrangements associated with adaptive intersexuality (ATAC-Seq) (Submitter supplied) Linking genomic variation to phenotypical traits remains a major challenge in evolutionary genetics. In this study, we use phylogenomic strategies to investigate a distinctive trait among mammals: the development of masculinizing ovotestes in female moles. By combining a chromosome-scale genome assembly of the Iberian mole, Talpa occidentalis, with transcriptomic, epigenetic, and chromatin interaction datasets, we identify rearrangements altering the regulatory landscape of genes with distinct gonadal expression patterns. more... Organism: Talpa occidentalis Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25619 6 Samples FTP download: GEO (BED, BW, FA, GFF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493638 Series Accession: GSE120586 ID: 200120586 1343. Decoding myofibroblast origins in human kidney fibrosis [RNA-seq] (Submitter supplied) Kidney fibrosis is the hallmark of chronic kidney disease progression, however currently no antifibrotic therapies exist. This is largely because the origin, functional heterogeneity and regulation of scar-forming cells during human kidney fibrosis remains poorly understood. Here, using single cell RNA-seq, we profiled the transcriptomes of proximal tubule and non-proximal tubule cells in healthy and fibrotic human kidneys to map the entire human kidney in an unbiased approach. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL24247 2 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA606255 Series Accession: GSE145170 ID: 200145170 1344. Decoding myofibroblast origins in human kidney fibrosis [ATAC-seq] (Submitter supplied) Kidney fibrosis is the hallmark of chronic kidney disease progression, however currently no antifibrotic therapies exist. This is largely because the origin, functional heterogeneity and regulation of scar-forming cells during human kidney fibrosis remains poorly understood. Here, using single cell RNA-seq, we profiled the transcriptomes of proximal tubule and non-proximal tubule cells in healthy and fibrotic human kidneys to map the entire human kidney in an unbiased approach. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA606247 Series Accession: GSE145164 ID: 200145164 1345. RNA Helicase DDX5, a Negative Regulator of Wnt Activation and Hepatocyte Reprogramming in Hepatitis B Virus-associated Hepatocellular Carcinoma (Submitter supplied) We demonstrate that HBV infection induces expression of the proto-oncogenic miR17~92 and miR106b~25 clusters which target the downregulation of DDX5. Increased expression of these miRNAs is also detected in HBV-driven HCCs exhibiting reduced DDX5 mRNA. Stable DDX5 knockdown (DDX5KD) in HBV replicating hepatocytes increased viral replication, and resulted in hepatosphere formation, drug resistance, Wnt activation, and pluripotency gene expression. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 19 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543067 Series Accession: GSE131257 ID: 200131257 1346. A Chinese hamster transcription start site atlas that enables targeted editing of CHO cells (Submitter supplied) Gene expression is a key determinant of phenotypes that made Chinese Hamster Ovary (CHO) cells, with their human-like glycosylation profile and high protein titers, one of the most widely used cells for the production of therapeutic proteins and biopharmaceuticals. Engineering CHO gene expression thus holds a key to improve drug quality and cost effective production. However, the success of engineering gene expression or ectopic activation of silent genes to optimize desired pathways requires accurate annotation of the underlying regulatory elements and the transcription start site (TSS). more... Organism: Cricetulus griseus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing Platforms: GPL22327 GPL20904 72 Samples FTP download: GEO (BED, BEDGRAPH, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE159nnn/GSE159044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA667472 Series Accession: GSE159044 ID: 200159044 1347. Combinatorial action of temporally-segregated transcription factors (Submitter supplied) Combinatorial action of transcription factors(TFs) with partially-overlapping expression is a widespreadstrategyto generate novel gene-expression patternsand thuscellular diversity. Known mechanisms underlying combinatorialactivityrequireco-expression of TFswithin the same cell. Here, we describe themechanismby which twoTFsthat are never co-expressed, generate a new, intersectional expression pattern in C. more... Organism: Caenorhabditis elegans Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL27998 GPL18245 38 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA649565 Series Accession: GSE155392 ID: 200155392 1348. Modulating Androgen Receptor-driven Transcription in Prostate Cancer with Selective CDK9 InhibitorsModulating Androgen Receptor-driven Transcription in Prostate Cancer with Selective CDK9 Inhibitors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 47 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156885/ Series Accession: GSE156885 ID: 200156885 1349. Modulating Androgen Receptor-driven Transcription in Prostate Cancer with Selective CDK9 Inhibitors [ATAC-seq] (Submitter supplied) Castration resistant prostate cancers (CRPCs) lose sensitivity to androgen deprivation therapies but frequently remain dependent on oncogenic transcription driven by androgen receptor (AR) and its splice variants. To discover novel modulators of AR variant activity, we used a lysate-based small molecule microarray (SMM) assay and identified KI-ARv-03 as an AR variant complex binder that reduces AR-driven transcription and proliferation in prostate cancer cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 3 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659350 Series Accession: GSE156881 ID: 200156881 1350. Genome-wide CRISPR screen reveals host genes that regulate SARS-CoV-2 infection [ATAC-seq] (Submitter supplied) Identification of host genes essential for SARS-CoV-2 infection may reveal novel therapeutic targets and inform our understanding of COVID-19 pathogenesis. Here we performed a genome-wide CRISPR screen with SARS-CoV-2 in Vero-E6 cells, identifying known SARS-CoV-2 host factors including the receptor ACE2 and protease Cathepsin L. We additionally discovered novel pro-viral genes and pathways including the SWI/SNF chromatin remodeling complex, the alarmin HMGB1, and the transcription factors Smad3 and Smad4. more... Organism: Chlorocebus sabaeus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL28895 6 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647434 Series Accession: GSE154782 ID: 200154782 1351. Specific ectodermal enhancers control the expression of Hoxc genes in developing mammalian teguments [ATAC-seq] (Submitter supplied) Vertebrate Hox genes are key players in the establishment of structures during the development of the main body axis. Subsequently, they play important roles either in organizing secondary axial structures such as the appendages, or during homeostasis in postnatal stages and adulthood. Here we set up to analyze their elusive function in the ectodermal compartment, using the mouse limb bud as a model. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 5 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633173 Series Accession: GSE150700 ID: 200150700 1352. Single-cell omics analysis reveals functional diversification of hepatocytes during liver regeneration [ATAC-Seq] (Submitter supplied) Adult liver has enormous regenerative capacity as it can regenerate after losing two-thirds of its mass while sustaining essential metabolic functions. How the liver balances dual demands for increased proliferative activity with maintenance of organ function is unknown, but essential to prevent liver failure. Using partial hepatectomy (PHx) in mice to model liver regeneration, we integrated single-cell RNA and ATAC sequencing to map state transitions in ~ 13,000 hepatocytes at single-cell resolution as livers regenerated, and validated key findings with immunohistochemistry, to uncover how the organ regenerates hepatocytes while simultaneously fulfilling its vital tissue-specific functions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA666788 Series Accession: GSE158865 ID: 200158865 1353. Identifying improved sites for heterologous gene integration using ATAC-seq (Submitter supplied) We analyzed the chromatin accessibility and nucleosome positioning by ATAC-seq of both null and transgene-expressing strains of Komagataella phaffii (Pichia pastoris) under different growth conditions. These data enabled identification of the features that determine performance of various integration sites for transgene expression. Understanding chromatin accessibility and nucleosome positioning can provide further clarity into gene regulation and expression broadly in this organism. Organism: Komagataella phaffii Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23539 24 Samples FTP download: GEO (FA) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA645901 Series Accession: GSE154330 ID: 200154330 1354. Genome-wide identification of accessible chromatin regions in bumblebee by ATAC-seq (Submitter supplied) Bumblebees (Hymenoptera: Apidae) are important pollinating insects that play pivotal roles in crop production and natural ecosystem services. To achieve a comprehensive profile of accessible chromatin regions and provide clues for all possible regulatory elements in the bumblebee genome, we did ATAC-seq for Bombus terrestris samples derived from its four developmental stages: egg, larva, pupa, and adult, respectively. more... Organism: Bombus terrestris Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL26656 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637506 Series Accession: GSE151858 ID: 200151858 1355. RNA-Seq and ATAC-Seq of HEK239T cell line carrying different genotypes at rs4420550 by CRISPR/Cas9 editing (Submitter supplied) Background: Genome-wide association studies (GWAS) have reported hundreds of genomic loci associated with schizophrenia, yet identifying the functional risk variations is a key step in elucidating the underlying mechanisms. Methods: We applied multiple bioinformatics and molecular approaches, including expression quantitative trait loci (eQTL) analyses, epigenome signature identification, luciferase reporter assay, chromatin conformation capture (3C), homology-directed genome editing by CRISPR/Cas9, RNA-sequencing (RNA-Seq) and assay for transposase-accessible chromatin using sequencing (ATAC-Seq). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20795 GPL24676 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638561 Series Accession: GSE152177 ID: 200152177 1356. ATAC-seq in mouse skeletal muscle (Submitter supplied) We perfomed ATAC-seq on C57/Bl6 mouse skeletal muscle nuclear extracts Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 1 Sample FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637258 Series Accession: GSE151790 ID: 200151790 1357. Fli1 as transcriptional safeguard that restrains effector CD8 T cell differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 20 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149839/ Series Accession: GSE149839 ID: 200149839 1358. Chromatin accessibility changes of Fli1ko vs WT in CD8 T cells (Submitter supplied) Genetic deletion of Fli1 enhanced CD8 Effector responses Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 6 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630255 Series Accession: GSE149836 ID: 200149836 1359. Charting the prostate epigenomic landscape from transformation to progression (Submitter supplied) We generate histone modification and ATAC cistromes in primary prostate cancer human specimens Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 15 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA611511 Series Accession: GSE146617 ID: 200146617 1360. The glucocorticoid receptor coordinates myofiber-selective transcriptional networks (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL21103 22 Samples FTP download: GEO (BED, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142796/ Series Accession: GSE142796 ID: 200142796 1361. Wnt/β-catenin activation epigenetically reprograms Regulatory T cells in IBD and progression to dysplasia (Submitter supplied) Previous work indicated that β-catenin/TCF-1 occupy DNA together with Foxp3. Thus, we anticipated that precise mapping of TCF-1 and Foxp3 co-binding in Tregs, could provide a molecular explanation for our phenotypic observations. To address this, we analyzed TCF-1 DNA binding in Tregs through chromatin immunoprecipitation and deep sequencing (ChIPseq) in Foxp3YFP-Cre WT Tregs. Furthermore, we assessed regions of accessible chromatin in Tregs via transposase-accessible chromatin approach and deep sequencing (ATAC-seq). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 13 Samples FTP download: GEO (BEDGRAPH, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587731 Series Accession: GSE139960 ID: 200139960 1362. The histone H3G34R mutation disrupts the epigenome via catalytic inactivation of the ASH1 H3K36 methyltransferase [ATAC-seq] (Submitter supplied) The recurrent mutation of histone variant H3.3 at glycine-34 (H3.3G34) defines a type of pediatric glioma. Characteristic changes to the epigenome associated with the disease are thought to be the consequence of altered methylation of the adjacent lysine-36 (K36) residue, but the complexity of this regulatory pathway in humans, combined with a multi-component disease etiology, has limited our understanding of how H3.3G34 mutations contribute to oncogenesis. more... Organism: Neurospora crassa Type: Methylation profiling by high throughput sequencing Platforms: GPL23150 GPL16164 5 Samples FTP download: GEO (BIGWIG, IGV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555417 Series Accession: GSE134445 ID: 200134445 1363. Memory OT-I cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 24 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152394/ Series Accession: GSE152394 ID: 200152394 1364. Genome wide analysis of Open Chromatin Regions in memory OT-I cells (Submitter supplied) Cognate antigen signals control CD8+ T cell priming, expansion size and effector versus memory cell fates, however, it is not clear whether they can also modulate the functional features of memory CD8+ T cells. We observed that OT-I cells that were primed with weak cognate antigen signals incorporate more cytokine signals, leading to a hypothesis that CD8+ T cells that receive weak TCR signals require cytokine signals to form functional memory. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA639157 Series Accession: GSE152392 ID: 200152392 1365. Epigenomics-Based Identification of Estrogen-regulated Long Noncoding RNAs in ER+ Breast Cancer [ChIP-Seq] (Submitter supplied) Breast cancer is one of the most prevalent cancers in women worldwide. Through the regulation of many coding and non-coding target genes, estrogen (E2 or 17b-estradiol) and its nuclear receptor ERα play important roles in breast cancer development and progression. Despite intensive studies on estrogen-regulated coding genes over the past decades, molecular mechanisms underlying estrogen-regulated non-coding RNAs in breast cancer remain to be elucidated. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21290 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605354 Series Accession: GSE144926 ID: 200144926 1366. Epigenomics-Based Identification of Estrogen-regulated Long Noncoding RNAs in ER+ Breast Cancer [ATAC-Seq] (Submitter supplied) Breast cancer is one of the most prevalent cancers in women worldwide. Through the regulation of many coding and non-coding target genes, estrogen (E2 or 17b-estradiol) and its nuclear receptor ERα play important roles in breast cancer development and progression. Despite intensive studies on estrogen-regulated coding genes over the past decades, molecular mechanisms underlying estrogen-regulated non-coding RNAs in breast cancer remain to be elucidated. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21290 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605355 Series Accession: GSE144925 ID: 200144925 1367. genesorteR: Feature Ranking in Clustered Single Cell Data (Submitter supplied) Marker genes identified in single cell experiments are expected to be highly specific to a certain cell type and highly expressed in that cell type. Detecting a gene by differential expression analysis does not necessarily satisfy those two conditions and is typically computationally expensive for large cell numbers. Here we present genesorteR, an R package that ranks features in single cell data in a manner consistent with the expected definition of marker genes in experimental biology research. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (MTX, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564101 Series Accession: GSE136950 ID: 200136950 1368. Epigenetic hallmarks of age-related macular degeneration are recapitulated in a photosensitive mouse model (Submitter supplied) Age-related macular degeneration (AMD) is a chronic, multifactorial disorder and a leading cause of blindness in the elderly. Characterized by progressive photoreceptor degeneration in the central retina, disease progression involves epigenetic changes in chromatin accessibility resulting from environmental exposures and chronic stress. Here, we report that a photosensitive mouse model of acute stress-induced photoreceptor degeneration recapitulates the epigenetic hallmarks of human AMD. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 67 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644202 Series Accession: GSE153817 ID: 200153817 1369. Single cell RNA-seq analysis reveals the crucial role of Collagen triple helix repeat containing 1 (Cthrc1) cardiac fibroblasts for ventricular remodeling after myocardial infarction [ATAC-seq] (Submitter supplied) Cardiac fibroblasts have a central role during the ventricular remodeling process associated to different types of cardiac injury. Recent studies have shown that fibroblasts do not respond homogeneously to heart damage, suggesting that the adult myocardium may contain specialized fibroblast subgroups with specific functions. Due to the limited set of bona fide fibroblast markers, a proper characterization of fibroblast population dynamics in response to cardiac damage is still missing. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA546022 Series Accession: GSE132145 ID: 200132145 1370. Multi-transcription factor reporter mice delineate early precursors to the LTi and ILC lineages (Submitter supplied) Transcription factor (TF) reporter mice have proved integral to the characterization of murine innate lymphoid cell (ILC) development and function. Here, we implemented a CRISPR/Cas9-generated combinatorial reporter approach for the simultaneous resolution of several key TFs throughout ILC development in both the fetal liver and adult bone marrow. We demonstrate that the Tcf7-expressing early innate lymphoid progenitor (EILP) and the common helper innate lymphoid progenitor (CHILP) both contain a heterogeneous mixture of committed ILC and Lymphoid Tissue-inducer (LTi) precursors, rather than a shared precursor to these lineages. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 18 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633532 Series Accession: GSE150763 ID: 200150763 1371. Loss of extreme long-range enhancers in human neural crest drives a craniofacial disorder (Submitter supplied) Non-coding mutations at the far end of a large gene desert surrounding the SOX9 gene result in a human craniofacial disorder called Pierre Robin sequence (PRS). In this study we utilise epigenomic profiling of histone modifications and coactivator binding using ChIP-seq and chromatin accessibility using ATAC-seq to map cis-regulatory enhancer elements within the PRS locus during differentiation of human embryonic stem cells to cranial neural crest and chondrocytes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL20301 GPL18573 80 Samples FTP download: GEO (BW, GFF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA606766 Series Accession: GSE145327 ID: 200145327 1372. A saturating mutagenesis CRISPR-Cas9 mediated functional genomic screen identifies cis- and trans- regulatory elements of Oct4 in embryonic stem cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17021 11 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140911/ Series Accession: GSE140911 ID: 200140911 1373. A saturating mutagenesis CRISPR-Cas9 mediated functional genomic screen identifies cis- and trans- regulatory elements of Oct4 in embryonic stem cells (ATAC-seq) (Submitter supplied) Regulatory elements (REs) consist of enhancers and promoters that occupy a significant portion of the non-coding genome and control gene expression programs either in –cis or in –trans. Putative REs have been identified largely based on their regulatory features (co-occupancy of ESC-specific transcription factors, enhancer histone marks and DNase hypersensitivity) in mouse embryonic stem cells (mESCs). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 5 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140909/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591393 Series Accession: GSE140909 ID: 200140909 1374. ATAC-seq identifies chromatin landscapes linked to the regulation of oxidative stress in the human fungal pathogen Candida albicans (Submitter supplied) ATAC-seq analysis of Candida albicans SC5314 treated or not treated with hydrogen peroxide to assess the accessible chromatin landscape upon oxidative stress in comparison to normal growth in YPD at 30 °C. Organism: Candida albicans Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL27827 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658373 Series Accession: GSE156582 ID: 200156582 1375. Epigenomic analyses of FOXA1-mediated enhancer reprogramming to control tumor subtype plasticity through HH-BMP-FOXA1 signalling feedback between urothelial tumor and stromal fibroblasts [H3K27ac ChIP-seq] (Submitter supplied) Consistent with the previous study, we showed that tumor molecular subtypes switched between the luminal subtype and the basal subtype during long-term maintenance of conventional tumor organoids in the absence of stroma in vitro, indicating the important role of tumor stroma in maintaining the tumor phenotype. Interestingly, genomic alterations seen in parental tumors are preserved well in both conventional tumor organoids and tumor assembloids, implying that the determination of tumor phenotypes may rely on epigenetic changes in tumor stroma-dependent ways, particularly through stromal BMP signals, elicited by Hh expression in tumor cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625894 Series Accession: GSE148819 ID: 200148819 1376. Epigenomic analyses of FOXA1-mediated enhancer reprogramming to control tumor subtype plasticity through HH-BMP-FOXA1 signalling feedback between urothelial tumor and stromal fibroblasts (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 72 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141356/ Series Accession: GSE141356 ID: 200141356 1377. Epigenomic analyses of FOXA1-mediated enhancer reprogramming to control tumor subtype plasticity through HH-BMP-FOXA1 signalling feedback between urothelial tumor and stromal fibroblasts [FOXA1 ChIP-seq] (Submitter supplied) Consistent with the previous study, we showed that tumor molecular subtypes switched between the luminal subtype and the basal subtype during long-term maintenance of conventional tumor organoids in the absence of stroma in vitro, indicating the important role of tumor stroma in maintaining the tumor phenotype. Interestingly, genomic alterations seen in parental tumors are preserved well in both conventional tumor organoids and tumor assembloids, implying that the determination of tumor phenotypes may rely on epigenetic changes in tumor stroma-dependent ways, particularly through stromal BMP signals, elicited by Hh expression in tumor cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141354/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593210 Series Accession: GSE141354 ID: 200141354 1378. Epigenomic analyses of FOXA1-mediated enhancer reprogramming to control tumor subtype plasticity through HH-BMP-FOXA1 signalling feedback between urothelial tumor and stromal fibroblasts [ATAC-seq] (Submitter supplied) Consistent with the previous study, we showed that tumor molecular subtypes switched between the luminal subtype and the basal subtype during long-term maintenance of conventional tumor organoids in the absence of stroma in vitro, indicating the important role of tumor stroma in maintaining the tumor phenotype. Interestingly, genomic alterations seen in parental tumors are preserved well in both conventional tumor organoids and tumor assembloids, implying that the determination of tumor phenotypes may rely on epigenetic changes in tumor stroma-dependent ways, particularly through stromal BMP signals, elicited by Hh expression in tumor cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 16 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593209 Series Accession: GSE141351 ID: 200141351 1379. Epigenomic analyses of FOXA1-mediated enhancer reprogramming to control tumor subtype plasticity through HH-BMP-FOXA1 signalling feedback between urothelial tumor and stromal fibroblasts [RNA-seq] (Submitter supplied) Consistent with the previous study, we showed that tumor molecular subtypes switched between the luminal subtype and the basal subtype during long-term maintenance of conventional tumor organoids in the absence of stroma in vitro, indicating the important role of tumor stroma in maintaining the tumor phenotype. Interestingly, genomic alterations seen in parental tumors are preserved well in both conventional tumor organoids and tumor assembloids, implying that the determination of tumor phenotypes may rely on epigenetic changes in tumor stroma-dependent ways, particularly through stromal BMP signals, elicited by Hh expression in tumor cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593203 Series Accession: GSE141350 ID: 200141350 1380. ATAC-seq and RNA-seq for MDCKII 3D and 2D epithelial morphogenesis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Canis lupus familiaris Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21400 GPL20988 36 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129824/ Series Accession: GSE129824 ID: 200129824 1381. ATAC-seq for MDCKII 3D and 2D epithelial morphogenesis (Submitter supplied) We performed ATAC-seq experiments for MDCKII 3D cells, confluent 2D cells as well as seeding day0 cells to study if transcriptome changes during epithelial morphogenesis is associated with chromatin changes. Organism: Canis lupus familiaris Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21400 7 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532907 Series Accession: GSE129822 ID: 200129822 1382. Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Bos taurus; Gallus gallus; Sus scrofa Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 9 related Platforms 334 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158430/ Series Accession: GSE158430 ID: 200158430 1383. Comparative functional genome annotation of livestock species identifies core amniote regulatory features and avian enhancer versatility (ATAC-Seq) (Submitter supplied) Gene regulatory elements are central drivers of phenotypic variation and thus of critical importance towards understanding the genetics of complex traits. Here we present a genome-wide annotation of regulatory elements in a non-mammalian vertebrate, chicken (Gallus gallus), as well as two important agricultural mammalian species: pig (Sus scrofa) and cattle (Bos taurus), with chicken and pig in particular being important to human biology and medicine. more... Organism: Bos taurus; Sus scrofa Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL29175 GPL27907 31 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA665194 Series Accession: GSE158414 ID: 200158414 1384. Impact of sustained TGFβ-receptor inhibition on chromatin accessibility and gene expression in cultured endometrial MSC (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21290 GPL18460 12 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146067/ Series Accession: GSE146067 ID: 200146067 1385. Impact of sustained TGFβ-receptor inhibition on chromatin accessibility and gene expression in cultured endometrial MSC [ATAC-Seq] (Submitter supplied) Endometrial mesenchymal stem cells (eMSC) drive the extraordinary regenerative capacity of the human endometrium. Clinical application of eMSC for therapeutic purposes is hampered by spontaneous differentiation and cellular senescence upon large-scale expansion in vitro. A83-01, a selective TGFbeta receptor inhibitor, promotes pharmacological expansion of eMSC in culture by blocking differentiation and senescence. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18460 6 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA609218 Series Accession: GSE146065 ID: 200146065 1386. Characterization of epigenomic and transcriptomic changes upon TGF-beta treatment in NMuMG cells [DnaseI-seq] (Submitter supplied) TGFβ cytokines have crucial roles in development, proliferation, tissue homeostasis, differentiation, and immune regulation. Consequently, alterations in TGFβ signaling underlie numerous diseases, including cancer. Moreover TGFβ is one of the most potent inductors of EMT (epithelial to mesenchymal transition) in normal and oncogenic epithelial cells from different origins. During EMT, cells undergo an extensive reorganization of cell adhesion complexes, cytoskeletal architecture, and extracellular matrix interactions and acquire increased motility and invasion properties. more... Organism: Mus musculus Type: Other Platform: GPL19057 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644797 Series Accession: GSE154006 ID: 200154006 1387. Characterization of epigenomic and transcriptomic changes upon TGF-beta treatment in NMuMG cells [ATAC-seq_2] (Submitter supplied) TGFβ cytokines have crucial roles in development, proliferation, tissue homeostasis, differentiation, and immune regulation. Consequently, alterations in TGFβ signaling underlie numerous diseases, including cancer. Moreover TGFβ is one of the most potent inductors of EMT (epithelial to mesenchymal transition) in normal and oncogenic epithelial cells from different origins. During EMT, cells undergo an extensive reorganization of cell adhesion complexes, cytoskeletal architecture, and extracellular matrix interactions and acquire increased motility and invasion properties. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154005/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644795 Series Accession: GSE154005 ID: 200154005 1388. CHANGE-seq reveals the genome-wide activity of CRISPR-Cas9 [ATAC-seq] (Submitter supplied) We recently developed CHANGE-seq (Circularization for High-throughput Analysis of Nuclease Genome-wide Effects by Sequencing), a fast, streamlined, Tn5 tagmentation-based assay for measuring the genome-wide activity of Cas9 in vitro that is easily scalable to many targets and samples. In this study, we directly compare CIRCLE-seq to CHANGE-seq and systematically evaluate Cas9 genome-wide activity on 110 targets across 13 therapeutically-relevant loci leveraging CHANGE-seq. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149361/ Series Accession: GSE149361 ID: 200149361 1389. ATAC-seq of human dendritic cells (Submitter supplied) Human dendritic cells (DCs) comprise subsets with distinct phenotypic and functional characteristics, but the transcriptional programs that dictate their identity remain elusive. Here, we collected global chromatin accessibility profiles across resting and stimulated human DC subsets by means of the assay for transposase-accessible chromatin using sequencing (ATAC-seq). We uncovered chromatin accessibility specific for each subset and discovered previously undescribed transcriptional regulators of DC function. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 63 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA612317 Series Accession: GSE146896 ID: 200146896 1390. Characterization of epigenomic and transcriptomic changes upon TGF-beta treatment in NMuMG cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19057 GPL13112 48 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140552/ Series Accession: GSE140552 ID: 200140552 1391. Characterization of epigenomic and transcriptomic changes upon TGF-beta treatment in NMuMG cells [RNA-seq] (Submitter supplied) TGFβ cytokines have crucial roles in development, proliferation, tissue homeostasis, differentiation, and immune regulation. Consequently, alterations in TGFβ signaling underlie numerous diseases, including cancer. Moreover TGFβ is one of the most potent inductors of EMT (epithelial to mesenchymal transition) in normal and oncogenic epithelial cells from different origins. During EMT, cells undergo an extensive reorganization of cell adhesion complexes, cytoskeletal architecture, and extracellular matrix interactions and acquire increased motility and invasion properties. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590175 Series Accession: GSE140551 ID: 200140551 1392. Characterization of epigenomic and transcriptomic changes upon TGF-beta treatment in NMuMG cells [ChromRNA-seq] (Submitter supplied) TGFβ cytokines have crucial roles in development, proliferation, tissue homeostasis, differentiation, and immune regulation. Consequently, alterations in TGFβ signaling underlie numerous diseases, including cancer. Moreover TGFβ is one of the most potent inductors of EMT (epithelial to mesenchymal transition) in normal and oncogenic epithelial cells from different origins. During EMT, cells undergo an extensive reorganization of cell adhesion complexes, cytoskeletal architecture, and extracellular matrix interactions and acquire increased motility and invasion properties. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590176 Series Accession: GSE140550 ID: 200140550 1393. Characterization of epigenomic and transcriptomic changes upon TGF-beta treatment in NMuMG cells [ChIP-seq] (Submitter supplied) TGFβ cytokines have crucial roles in development, proliferation, tissue homeostasis, differentiation, and immune regulation. Consequently, alterations in TGFβ signaling underlie numerous diseases, including cancer. Moreover TGFβ is one of the most potent inductors of EMT (epithelial to mesenchymal transition) in normal and oncogenic epithelial cells from different origins. During EMT, cells undergo an extensive reorganization of cell adhesion complexes, cytoskeletal architecture, and extracellular matrix interactions and acquire increased motility and invasion properties. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590177 Series Accession: GSE140549 ID: 200140549 1394. Characterization of epigenomic and transcriptomic changes upon TGF-beta treatment in NMuMG cells [ATAC-seq] (Submitter supplied) TGFβ cytokines have crucial roles in development, proliferation, tissue homeostasis, differentiation, and immune regulation. Consequently, alterations in TGFβ signaling underlie numerous diseases, including cancer. Moreover TGFβ is one of the most potent inductors of EMT (epithelial to mesenchymal transition) in normal and oncogenic epithelial cells from different origins. During EMT, cells undergo an extensive reorganization of cell adhesion complexes, cytoskeletal architecture, and extracellular matrix interactions and acquire increased motility and invasion properties. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590178 Series Accession: GSE140548 ID: 200140548 1395. Beclin1 Shapes Cardiomyocyte Cell Identity Independent of Its Autophagic Function during Cardiac Reprogramming (Submitter supplied) This study aimed to compare the transcriptome profiling (RNA-seq) and chromatin accessibility landscape (ATACseq) of induced cardiomyocytes (iCMs) with Beclin1 (Becn1) knockdown and control iCMs (shNT). we generated ATAC-Seq data from day 3 shNT- and shBecn1-treated MGT or control LacZ transduced fibroblasts. We interrogated the enrichment of ATAC-seq reads at +1 and -1 Kb around TSS (Transcription starting site). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL17021 24 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA643238 Series Accession: GSE153560 ID: 200153560 1396. Impact of a Uty gene trap on the regulation of genes and the abundance of corresponding transcripts in adult mouse somatic (non-reproductive) cells (ATAC-Seq) (Submitter supplied) In addition to sperm-related genes, the male-specific chromosome Y (chrY) contains a class of ubiquitously expressed and evolutionary conserved dosage-sensitive regulator genes, which include the neighboring Uty, Ddx3y and (in mice) Eif2s3y genes. However, the impact of targeted mutations of these genes on the functions of adult non-reproductive somatic cells is still unknown due to lack of experimental evidence. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA615872 Series Accession: GSE147649 ID: 200147649 1397. Trajectory analysis quantifies transcriptional plasticity during macrophage polarization (Submitter supplied) Ctyokine-stimulated polarization and repolarization of murine bone marrow-derived macrophages (LPS + IFNγ, IL-4); bulk RNA-seq timecourse and bulk ATAC-seq for selected timepoints and conditions Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 161 Samples FTP download: GEO (CSV, MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663924 Series Accession: GSE158094 ID: 200158094 1398. The SBE7 enhancer is active in Shh expressing brain tissue at E10.5 (Submitter supplied) Using ATAC-seq, we identified an accessible chromatin region within the Shh expressing cell population of eGFP/Cre-Shh mice, which did not correspond to SBE2-4. This open region displayed high levels of vertebrate conservation, and did not map to a known CTCF site. Further analysis revealed the coordinates of this presumptive active enhancer to correspond to the recently identified SBE7 enhancer. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 1 Sample FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE158nnn/GSE158074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA663892 Series Accession: GSE158074 ID: 200158074 1399. Yap/Taz promote the scavenging of extracellular nutrients through macropinocytosis [ATAC-Seq] (Submitter supplied) The uptake of macromolecules and cellular debris through macropinocytosis has emerged as an important nutrient acquisition strategy of cancer cells. Genetic alterations commonly found in human cancers (e.g. mutations in KRAS or loss of PTEN) have been shown to increase macropinocytosis. To identify additional effectors that enable cell growth dependent on the uptake of extracellular proteins, pancreatic ductal adenocarcinoma (PDA) cells were selected for growth in medium where extracellular albumin was the obligate source of the essential amino acid leucine. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA655198 Series Accession: GSE155674 ID: 200155674 1400. CHD8 dosage regulates transcription in pluripotency and early murine neural differentiation [ATAC-seq] (Submitter supplied) The chromatin remodeler CHD8 is among the most frequently mutated genes in autism spectrum disorder (ASD). CHD8 has a dosage-sensitive role in ASD but when and how it becomes critical to human social function is unclear. Here, we conducted genomic analyses of heterozygous and homozygous Chd8 mouse embryonic stem cells and differentiated neural progenitors. We identify dosage-sensitive CHD8 transcriptional targets, sites of regulated accessibility, and an unexpected cooperation with SOX transcription factors. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648979 Series Accession: GSE155215 ID: 200155215 1401. Epigenetic subtypes of neuroblastoma [ATAC-Seq] (Submitter supplied) In the absence of recurrent gene mutations, evidence accumulates that epigenetic deregulation plays a prominent role in neuroblastoma biology. Here we provide chromatin accessiblity profiles from ATAC-seq data in 2 neuroblastoma cell-lines. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 2 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA561820 Series Accession: GSE136279 ID: 200136279 1402. Epigenetic subtypes of neuroblastoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL11154 GPL24676 123 Samples FTP download: GEO (BEDPE, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136209/ Series Accession: GSE136209 ID: 200136209 1403. The transcription factor EGR2 is the molecular linchpin connecting STAT6 activation to the stable epigenomic program of alternative macrophage polarization (Submitter supplied) Macrophages polarize into functionally distinct subtypes while responding to microenvironmental cues. The identity of proximal transcription factors (TFs) downstream of the polarization signals are known, but their activity is typically transient, failing to explain the long-term, stable epigenomic programs developed. Here, we mapped the early and late epigenomic changes of interleukin-4 (IL-4)-induced alternative macrophage polarization. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 72 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA634372 Series Accession: GSE151015 ID: 200151015 1404. Cortical RORb is required for layer 4 transcriptional identity and barrel integrity (Submitter supplied) RNA-seq and ATAC-seq from layer 4 cortical neurons expressing RORb-gfp or GFP in an RORb KO. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 28 Samples FTP download: GEO (BED, BW, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA574131 Series Accession: GSE138001 ID: 200138001 1405. Investigating the role of IL-2 in shaping the epigenome in T cells [ATAC-seq] (Submitter supplied) During T cell activation hundreds of genes are primed for efficient activation. Here we show that IL-2 signaling is required to maintain open chromatin at gene regulatory elements which are associated with alternate pathways of T cell differetiation.IL-2 actiavtes binding of AP-1 and STAT5 at sites that can subsequently bind other STAT and lineage dietermining proteins, depending on what other factors exist in their enviroment. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA657997 Series Accession: GSE156446 ID: 200156446 1406. BMP signaling cooperates with GATA factors to govern stage-specific gene expression during erythroid differentiation [ATAC-Seq] (Submitter supplied) Hematopoietic progenitors respond to developmental and environmental cues to differentiate. The stage-specific steps of differentiation are stereotypic for each cell lineage, and are controlled by transcription. Here we investigate how differential genomic binding of signal-responsive and lineage-restricted transcription factors can specify subsequent stages of erythropoiesis. Using a human erythroid differentiation system, we extensively characterized the co-operation of the BMP signaling transcription factor SMAD1 with the erythroid transcription factors GATA2 and GATA1 in a detailed time-course. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 7 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA300524 Series Accession: GSE74472 ID: 200074472 1407. Regulation of neuronal commitment in mouse embryonic stem cells by the Reno/Bahcc1 locus (Submitter supplied) Regulation of neuronal commitment in mouse embryonic stem cells by the Reno/Bahcc1 locus Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 77 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA512278 Series Accession: GSE124517 ID: 200124517 1408. Genomic characterization of SMARCA4 mutants in lung cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL16791 GPL20301 77 Samples FTP download: GEO (BIGWIG, BW, NARROWPEAK, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144844/ Series Accession: GSE144844 ID: 200144844 1409. Chromatin accessibility of lung cancer cells reconstituted with SMARCA4 WT or SMARCA4 mutants with and without SMARCA2 depletion (Submitter supplied) Using ATAC-seq, we identified the accessibility changes in lung cancer cells (NCI-H1944) reconstituted with SMARCA4 WT or SMARCA4 mutants. We also determined the SMARCA2-regulated accessibility program in NCI-H1944 after SMARCA2 depletion. Lastly, we identified the SMARCA2 accessibility program that is rescued by SMARCA4 WT and mutants. The "SAMPLE_ID" sample characteristic is a sample identifier internal to Genentech. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 48 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605115 Series Accession: GSE144840 ID: 200144840 1410. H1 linker histones regulate the balance of repressive and active chromatin domains via localized genomic compaction [ATAC-seq] (Submitter supplied) H1 linker histones are the most abundant chromatin binding proteins. Their association with chromatin determines the spacing between nucleosomes and enables arrays of nucleosomes to fold into more compact chromatin structures. Mammals express multiple H1 proteins and are able to compensate for the loss of one or even two members by increasing synthesis of other members to maintain a constant H1 to nucleosome stoichiometry. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 16 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592605 Series Accession: GSE141184 ID: 200141184 1411. High throughput joint profiling of chromatin accessibility and protein levels in single cells [marrow] (Submitter supplied) Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present ATAC with Select Antigen Profiling by sequencing, ASAP-seq, a tool to simultaneously profile accessible chromatin and protein levels in thousands of single cells, pairing sparse scATAC data with robust detection of hundreds of cell surface and intracellular protein markers, and optionally, enriched mtDNA coverage for lineage tracing (mtscATAC-seq) with minimal impact on ATAC-seq data quality. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 3 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156477/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658082 Series Accession: GSE156477 ID: 200156477 1412. High throughput joint profiling of chromatin accessibility and protein levels in single cells [Tcell KO] (Submitter supplied) Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present ATAC with Select Antigen Profiling by sequencing, ASAP-seq, a tool to simultaneously profile accessible chromatin and protein levels in thousands of single cells, pairing sparse scATAC data with robust detection of hundreds of cell surface and intracellular protein markers, and optionally, enriched mtDNA coverage for lineage tracing (mtscATAC-seq) with minimal impact on ATAC-seq data quality. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 5 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658083 Series Accession: GSE156476 ID: 200156476 1413. High throughput joint profiling of chromatin accessibility and protein levels in single cells [Species mix] (Submitter supplied) Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present ATAC with Select Antigen Profiling by sequencing, ASAP-seq, a tool to simultaneously profile accessible chromatin and protein levels in thousands of single cells, pairing sparse scATAC data with robust detection of hundreds of cell surface and intracellular protein markers, and optionally, enriched mtDNA coverage for lineage tracing (mtscATAC-seq) with minimal impact on ATAC-seq data quality. more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24625 4 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658084 Series Accession: GSE156475 ID: 200156475 1414. High throughput joint profiling of chromatin accessibility and protein levels in single cells [PBMCs] (Submitter supplied) Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present ATAC with Select Antigen Profiling by sequencing, ASAP-seq, a tool to simultaneously profile accessible chromatin and protein levels in thousands of single cells, pairing sparse scATAC data with robust detection of hundreds of cell surface and intracellular protein markers, and optionally, enriched mtDNA coverage for lineage tracing (mtscATAC-seq) with minimal impact on ATAC-seq data quality. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 14 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658080 Series Accession: GSE156474 ID: 200156474 1415. High throughput joint profiling of chromatin accessibility and protein levels in single cells [PBMC stimulation] (Submitter supplied) Recent technological advances have enabled massively parallel single-cell Assay for Transposase Accessible Chromatin by sequencing (scATAC-seq) to simultaneously profile the epigenomic landscape in thousands of individual cells. scATAC-seq methods sample genomic DNA accessible to transposases, but have not previously been combined with measurement of protein levels. Here, we present ATAC with Select Antigen Profiling by sequencing, ASAP-seq, a tool to simultaneously profile accessible chromatin and protein levels in thousands of single cells, pairing sparse scATAC data with robust detection of hundreds of cell surface and intracellular protein markers, and optionally, enriched mtDNA coverage for lineage tracing (mtscATAC-seq) with minimal impact on ATAC-seq data quality. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL24676 8 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658078 Series Accession: GSE156473 ID: 200156473 1416. Genome wide chromatin accessibilty changes associated with JUN and SHH expression in human SSCL patients (Submitter supplied) We found that JUN and SHH expression is increased in many human fibrotic diseases and that systemic induction of Jun in mice resulted in development of fibrosis of multiple organs. To identify the changes in chromatin accessibility associated with JUN and SHH, we worked with primary SSCL dermal fibroblasts that have normal or Knock-out levels of JUN expression and vismodegib treatment then performed ATAC-seq analysis in all of them. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637779 Series Accession: GSE151943 ID: 200151943 1417. Genome-wide Chromatin Accessibility is Restricted by ANP32E [ATAC-seq] (Submitter supplied) Genome-wide chromatin state underlies gene expression potential and cellular function. Epigenetic features and nucleosome positioning contribute to the accessibility of DNA, but widespread regulators of chromatin state are largely unknown. Our study investigates how coordination of ANP32E and H2A.Z contributes to genome-wide chromatin state in mouse fibroblasts. We define H2A.Z as a universal chromatin accessibility factor, and demonstrate that ANP32E antagonizes H2A.Z accumulation to restrict chromatin accessibility genome-wide. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 9 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608062 Series Accession: GSE145703 ID: 200145703 1418. ATAC-seq of tissue resident neutrophils (Submitter supplied) Neutrophils residing in bone marrow, blood, lung, and spleen were sorted and subjected to ATAC-seq to investigate tissue heterogeneity Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593008 Series Accession: GSE141285 ID: 200141285 1419. Pygopus2-Histone interaction is important for de-differentiation and breast cancer progression [ATAC-Seq] (Submitter supplied) Pygopus2 (Pygo2), a co-activator of Wnt/ β-catenin signaling can also bind H3K4me2/3 and participate in chromatin reading and writing. To investigate the functional relevance of histone binding activity of Pygo2 in malignant progression of breast cancer, we generated a knockin mouse model wherein binding of Pygo2 to H3K4me2/3 was rendered ineffective. Loss of Pygo2-histone binding resulted in smaller, differentiated and less metastatic tumors, at least in part due to a decrease in Wnt/ b-catenin signaling. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133066/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA549872 Series Accession: GSE133066 ID: 200133066 1420. Pygopus2-Histone interaction is important for de-differentiation and breast cancer progression [RNA-Seq] (Submitter supplied) Pygopus2 (Pygo2), a co-activator of Wnt/ β-catenin signaling can also bind H3K4me2/3 and participate in chromatin reading and writing. To investigate the functional relevance of histone binding activity of Pygo2 in malignant progression of breast cancer, we generated a knockin mouse model wherein binding of Pygo2 to H3K4me2/3 was rendered ineffective. Loss of Pygo2-histone binding resulted in smaller, differentiated and less metastatic tumors, at least in part due to a decrease in Wnt/ b-catenin signaling. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA535506 Series Accession: GSE130330 ID: 200130330 1421. Cell type-specific oxidative stress genomic signatures in the globus pallidus of dopamine depleted mice (Submitter supplied) We developed a new viral affinity purification strategy, Cre-Specific Nuclear Anchored Independent Labeling (cSNAIL), to isolate Cre recombinase-expressing (Cre+) nuclei from the adult mouse brain. cSNAIL is an AAV that delivers a modified version of the nuclear-anchored protein tag developed for INTACT nuclei isolation (Deal & Henikoff, Dev Cell. 2010. 18:1030-1040; Mo et al., Neuron. 2015. 86(6):1369-1384). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24247 GPL19057 70 Samples FTP download: GEO (BED, BIGWIG, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661054 Series Accession: GSE157359 ID: 200157359 1422. Chromatin accessiblity of 3T3-L1 cells with Kdm5c knockdown (Submitter supplied) One day prior to confluency, non-targeting (scramble control) siRNA or Kdm5c siRNA were transfected into 3T3-L1 cells and chromatin structure was assessed by ATAC-seq at 24hr, 48hr, and 72 hr post transfection. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 23 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622778 Series Accession: GSE147994 ID: 200147994 1423. Diversification of posterior Hox patterning by graded ability to engage inaccessible chromatin (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL24247 GPL19057 70 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142379/ Series Accession: GSE142379 ID: 200142379 1424. Diversification of posterior Hox patterning by graded ability to engage inaccessible chromatin [ATAC-seq] (Submitter supplied) While Hox genes encode for similar transcription factors (TFs), they induce different fates across body axes. We sought to understand how Hox TF genomic binding preferences relate to their patterning activities during neuronal differentiation. To generate the required neuronal diversity for locomotor activity, Hox TFs specify spinal motor neuron and interneuron subtypes along the rostro-caudal axis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596781 Series Accession: GSE142375 ID: 200142375 1425. VISTA re-programs macrophage biology through the combined regulation of tolerance and anti-inflammatory pathways  (Submitter supplied) 1) BMDMs treated with anti-VISTA under tolerizing and immunizing conditions. 2) Time course analysis of anti-VISTA-induced alterations in human monocytes after anti-VISTA treatment. 3) Time course analysis of anti-VISTA-induced alterations in BMDMs after anti-VISTA treatment. 4) Single cell ATAC-seq of BMDMs tolerized in the presence or IgG or anti-VISTA. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 62 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661557 Series Accession: GSE157518 ID: 200157518 1426. Reduction in Gene Expression Noise by Targeted Decondensation of Gene Loci (Submitter supplied) ATAC-seq was done on various cell lines generated from HeLa cells. The cell lines contained dCas9 constructs conjugated to the histone acetyltransferase p300, as well as a similar system with multiple p300 fragments present, per dCas9 enzyme utilizing SunTag. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 16 Samples FTP download: GEO (BW, DOCX, NARROWPEAK, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA661214 Series Accession: GSE157399 ID: 200157399 1427. A comprehensive map of cis-regulatory elements and 3D genome structures in the zebrafish genome (Submitter supplied) The zebrafish has been widely used for the study of human disease and development, as ~70% of the protein-coding genes are conserved between the two species. Annotation of functional control elements of the zebrafish genome, however, has lagged behind that of other model systems such as mouse and Drosophila. Based on multi-omics approaches taken in the ENCODE and Roadmap Epigenomics projects, we performed RNA-seq, ATAC-seq, ChIP-seq and Hi-C experiments in ten adult and two embryonic tissues to generate a comprehensive map of transcriptomes and regulatory elements in the zebrafish Tuebingen reference strain. more... Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 4 related Platforms 204 Samples FTP download: GEO (BED, BW, HIC, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA553572 Series Accession: GSE134055 ID: 200134055 1428. Genome-wide maps of chromatin state in buffalo fibroblasts with different cloning efficency (Submitter supplied) We report the distribution of histone acetylation at global genomic level in donor cells with different cloning efficiency. By obtaining over 40 million clean reads from immunoprecipitated DNA, we generated genome-wide chromatin-state maps of two buffalo fibroblast cell lines. We find that high cloning efficiency BFFs also had more regions enriched with H3K9ac sites near to the upstream of genes related to glycolysis. more... Organism: Bubalus bubalis Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24849 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659421 Series Accession: GSE157250 ID: 200157250 1429. Histone 1 deficiency drives lymphomagenesis through disruption of 3D chromatin architecture (Submitter supplied) Linker histone H1 proteins bind to nucleosomes and cause chromatin compaction, although little is known about their biological functions. Histone H1 (HIST1H1B-E) mutations are highly recurrent in B-cell lymphomas and are present in solid tumors, but their cancer relevance and mechanism are unknown. Here we report that lymphoma-associated H1 alleles are genetic driver mutations in lymphomas. H1 mutations disrupt their ability to bind or compact chromatin. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 4 related Platforms 53 Samples FTP download: GEO (HIC, MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA599930 Series Accession: GSE143293 ID: 200143293 1430. Pioneer factor GAF cooperates with PBAP and NURF to regulate transcription [GAF ChIP-seq] (Submitter supplied) The Drosophila pioneer factor GAF is known to be essential for RNA Pol II promoter-proximal pausing and the removal of nucleosomes from a set of target promoters with GAGAG motifs. We and others have speculated that GAF recruits the ISWI family ATP-dependent chromatin remodeling complex NURF, on the basis that NURF and GAF are both required to remodel nucleosomes on an hsp70 promoter in vitro and that GAF interacts physically with NURF. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660485 Series Accession: GSE157235 ID: 200157235 1431. Mapping the landscape of chromatin dynamics during naïve CD4+ T-cell activation. (Submitter supplied) T-cell activation induces context-specific gene expression programs that promote energy generation and biosynthesis, progression through the cell cycle and ultimately cell differentiation. The aim of this study was to apply the omni ATAC-seq method to characterize the landscape of chromatin changes induced by T-cell activation in mature naïve CD4+ T-cells. Using a well-established ex vivo protocol of canonical T-cell receptor signaling, we generated genome-wide chromatin maps of naïve T-cells from pediatric donors in quiescent or recently activated states. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660396 Series Accession: GSE157174 ID: 200157174 1432. Multi-omic comparison of Alzheimer’s variants in human ESC-derived microglia reveals convergence at APOE [ATAC-seq] (Submitter supplied) Variations in many genes linked to sporadic Alzheimer’s disease (AD), show abundant expression in microglia, however, relationships between these genes remain largely elusive. Here, we establish isogenic human ES-derived microglia-like cell lines (hMGLs) harboring AD variants in CD33, INPP5D, SORL1 and TREM2 loci, and curate a comprehensive atlas comprising ATACseq, ChIPseq, RNAseq and proteomics datasets. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 21 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA643557 Series Accession: GSE153654 ID: 200153654 1433. The chromatin landscape modified by Zbtb18 in activated B cells (Submitter supplied) The differentiation of plasma cell is prescisely controlled by the key transcriptional program as well as epigenetic changes. Recently, we have identified, one zinc finger protein, Zbtb18, as a new regulator for B cell differentiation process. To investigate the molecular mechanisms of Zbtb18 during B cell differentiation program we employed the assay for transposase (Tn5) -accessible chromatin followed by deep sequencing (ATAC-Seq) in the sorted Control and Zbtb18 over-expressing B cells (B220+ CD138-) before and after anti-CD40 and IL-4 stimulation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532405 Series Accession: GSE129657 ID: 200129657 1434. ATAC-seq analysis of human breast cancer cell lines treated with abemaciclib (Submitter supplied) We measured changes in chromatin accessibility after treatment of human breast cancer cell lines with abemaciclib Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 32 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660031 Series Accession: GSE157082 ID: 200157082 1435. ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) assess genome-wide chromatin accessibility of Runx2fl/fl Mouse Molar Transcriptomes (Submitter supplied) Purpose: To study the function of Runx2 on mouse tooth root development. The goals of this study are to assess genome-wide chromatin accessibility of Runx2fl/fl Mouse Molar Transcriptomes to identify the potential downstream target of Runx2. Methods: the apical halves of lower 1st molars of PN7.5 control mice were lysed to get a single cell suspension. 50000 cells 50,000 cells were lysed, and followed by transposition reaction and purification, and PCR amplification. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 1 Sample FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA636372 Series Accession: GSE151563 ID: 200151563 1436. Single cell resolution regulatory landscape of the mouse kidney highlights cellular differentiation programs and renal disease targets (Submitter supplied) Determining the epigenetic program that generates unique cell types in the kidney is critical for understanding cell-type heterogeneity during tissue homeostasis and injury response. Here, we profiled open chromatin and gene expression in developing and adult mouse kidneys at single cell resolution. We show critical reliance of gene expression on distal regulatory elements (enhancers). We define key cell type-specific transcription factors and major gene-regulatory circuits for kidney cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL21103 13 Samples FTP download: GEO (BIGWIG, CSV, RDS, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA660027 Series Accession: GSE157079 ID: 200157079 1437. Multiomics profiling during onset of Salmon maturation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below.This contains multi-omics datasets transcriptomic (RNA-Seq), methylomic (WGBS), and epigenomics (ATAC-seq) obtained during onset of sexual maturation in Atlantic salmon. We used gene regulatory networks (GRNs) to integrate results from these multi-omic analyses to identify key regulators of maturation. Organism: Salmo salar Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL23792 GPL28848 GPL24981 88 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE157nnn/GSE157003/ Series Accession: GSE157003 ID: 200157003 1438. Liver Chromatin accessibility landscapes during onset of salmon maturation (Submitter supplied) We sequenced 12 ATAC-Seq lbraries from four biological replicates before (T1) and after the onset of maturation (T2, T3, T4) from liver. To characterise changes in chromatin state following long light initiation, we defined differentially accessible regions (DARs) where mapping counts differed significantly between T1 and other time points. This revealed a strong early remodelling in the chromatin state landscape, as most DARs were observed at T2 (n=1501) before decreasing in stepwise fashion at T3 (n=477) and T4. more... Organism: Salmo salar Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL28848 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659750 Series Accession: GSE156998 ID: 200156998 1439. Epigenetic profiling of hepatocyte, reprogrammed hepatocyte, and biliary cells (Submitter supplied) ATAC-seq analysis of mouse hepatocyte, reprogrammed hepatocyte, and biliary cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659644 Series Accession: GSE156946 ID: 200156946 1440. Histone H3.3 fills gaps in heterochromatin generated by Smarcad1 in mouse embryonic stem cells (ESC) (Submitter supplied) Nucleosome turnover concomitant with incorporation of the replication-independent histone variant H3.3 is a hallmark of regulatory regions in the animal genome. In our current understanding, nucleosome turnover is universally linked to DNA accessibility and histone acetylation. In mouse embryonic stem cells, H3.3 is also highly enriched at interstitial heterochromatin, most prominently intracisternal-A particle endogenous retroviral elements. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627246 Series Accession: GSE149080 ID: 200149080 1441. Tri-4C: efficient and quantitative analysis of enhancer loops at hundred base pair resolution (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL15520 44 Samples FTP download: GEO (BEDGRAPH, BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119189/ Series Accession: GSE119189 ID: 200119189 1442. Tri-4C: efficient and quantitative analysis of enhancer loops at hundred base pair resolution (ATAC-Seq) (Submitter supplied) Enhancer looping governs gene regulatory circuitry but is challenging to detect. Here we present Tri-4C, an ultrafine mapping method for distal chromatin contacts using triple restriction enzyme (RE) digestion. Tri-4C identifies enhancer loops that are undetectable by current single RE- based methods and reveals quantitative loop strengths in enhancer interaction networks underlying dynamic gene control. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA488422 Series Accession: GSE119188 ID: 200119188 1443. PPP2R2D suppresses interleukin-2 production and regulatory T cell function (Submitter supplied) Upon ATAC-seq, we found that lack of PPP2R2D expression in Tconv cells boosts chromatin opening of a large number of genes, while in Treg cells chromatin remodeling is limited. These findings demonstrate that PPP2R2D is more important in the direct regulation of Tconv cell function (IL-2 production) rather than Treg cell function. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659522 Series Accession: GSE156927 ID: 200156927 1444. Integrative analysis of coding, non-coding transcriptome and chromatin accessibility reveals a distinct gene expression and epigenetic landscape in human memory B cells (Submitter supplied) Memory B cells (MBCs) are long-lived and rapidly respond to cognate antigen with production of high-affinity, generally, class-switched antibodies. Here, we have developed an integrative analysis of differentially expressed (DE) mRNAs, miRNAs, lncRNAs, chromatin profiles and cis-regulatory elements to determine how gene expression intersects with epigenetic regulatory elements in human MBCs. Using a multiparameter cell sorting approach, we isolated CD27-IgD+NBCs, CD27+IgD+unswMBCs, CD27+IgG+swMBCs and CD27+IgA+swMBCs as well as total CD27-NBCs and CD27+MBCs from peripheral blood of healthy human subjects of different age, sex and ethnic background. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing Platform: GPL20301 40 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659492 Series Accession: GSE156904 ID: 200156904 1445. AP-1 and TGFb cooperativity drives non-canonical Hedgehog signaling in resistant basal cell carcinoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL11154 GPL13112 38 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156855/ Series Accession: GSE156855 ID: 200156855 1446. AP-1 and TGFb-dependent transcriptomic changes in resistant basal cell carcinoma cell line (Submitter supplied) Tumor heterogeneity and lack of knowledge about resistant cell states remain a significant barrier to effective targeted cancer therapies. Basal cell carcinomas (BCCs) uniformly depend on Hedgehog (Hh)/Gli signaling for cell growth. We previously identified a nuclear myocardin-related transcription factor (nMRTF) resistance pathway that amplifies Gli1 activity, but nMRTF cell state and key factors driving its accumulation remain unknown. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL13112 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA659018 Series Accession: GSE156789 ID: 200156789 1447. AP-1 dependent changes in chromatin accessibility in resistant basal cell carcinoma cell line (Submitter supplied) Tumor heterogeneity and lack of knowledge about resistant cell states remain a significant barrier to effective targeted cancer therapies. Basal cell carcinomas (BCCs) uniformly depend on Hedgehog (Hh)/Gli signaling for cell growth. We previously identified a nuclear myocardin-related transcription factor (nMRTF) resistance pathway that amplifies Gli1 activity, but nMRTF cell state and key factors driving its accumulation remain unknown. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658994 Series Accession: GSE156764 ID: 200156764 1448. Selective silencing rather than targeted activation of gene expression underlies fate choice in human hematopoietic stem cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL16791 32 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156735/ Series Accession: GSE156735 ID: 200156735 1449. Selective silencing rather than targeted activation of gene expression underlies fate choice in human hematopoietic stem cells (scRNA-seq) (Submitter supplied) When human cord blood derived CD34+ cells are induced to differentiate in vitro, they undergo rapid and dynamic morphological and molecular transformation that are critical for the fate commitment. Using ATAC-seq and single-cell RNA sequencing we detected two phases of this process. We show that a rapid and widespread chromatin opening - that makes most of the gene promoters in the genome accessible - precedes the high and unrestrained transcription of a large variety of genes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658928 Series Accession: GSE156734 ID: 200156734 1450. Selective silencing rather than targeted activation of gene expression underlies fate choice in human hematopoietic stem cells (ATAC-seq) (Submitter supplied) When human cord blood derived CD34+ cells are induced to differentiate in vitro, they undergo rapid and dynamic morphological and molecular transformation that are critical for the fate commitment. Using ATAC-seq and single-cell RNA sequencing we detected two phases of this process. We show that a rapid and widespread chromatin opening - that makes most of the gene promoters in the genome accessible - precedes the high and unrestrained transcription of a large variety of genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (BROADPEAK, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA658926 Series Accession: GSE156733 ID: 200156733 1451. The Atoh7 shadow enhancer provides transcriptional robustness during retinal ganglion cell development (Submitter supplied) The retinal ganglion cell (RGC) competence factor ATOH7 is dynamically expressed during retinal histogenesis. ATOH7 transcription is controlled by a promoter-adjacent primary enhancer and a remote shadow enhancer (SE). Deletion of the ATOH7 human SE causes non‑syndromic congenital retinal non-attachment (NCRNA) disease, characterized by optic nerve aplasia and total blindness. We used genome editing to model NCRNA in mice. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA612318 Series Accession: GSE146897 ID: 200146897 1452. Early programming of CD8+ T cell response by the orphan nuclear receptor NR4A3 [ATAC-Seq] (Submitter supplied) We analysed the chromatin opening and accessibillity of transcription factor binding motifs of in vitro activated OT-I CD8+ T cells in the absence of NR4A3 to determine the early impact of NR4A3 in CD8 T cell differentiation Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600864 Series Accession: GSE143511 ID: 200143511 1453. Evolution of the histone variant H2A.W reconstituted in fission yeast (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Schizosaccharomyces pombe Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL23689 GPL17225 46 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152086/ Series Accession: GSE152086 ID: 200152086 1454. Evolution of the histone variant H2A.W reconstituted in fission yeast [ATAC-seq] (Submitter supplied) Diversification of histone variants is marked by the acquisition of distinct motifs and features through convergent evolution. H2A variants tend to be associated with defined domains of the genome. Specific features distinguish H2A variants in eukaryotes but whether evolution of these features predated the evolution of deposition mechanisms or vice-versa has remained unclear.In flowering plants, the variant H2A.W is tightly associated with heterochromatin. more... Organism: Schizosaccharomyces pombe Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23689 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638275 Series Accession: GSE152081 ID: 200152081 1455. Stable unmethylated DNA demarcates expressed genes and their cis-regulatory space in plant genomes (Submitter supplied) The genomic sequences of diverse varieties of many crop species continue to be produced at a frenetic pace. However, it remains challenging to develop complete annotations of functional genes and regulatory elements in these genomes. Here, we explore the potential to use DNA methylation profiles to develop more complete and refined annotations. Using leaf tissue in maize, we define ~100,000 unmethylated regions (UMRs) that account for 5.8% of the genome; 33,375 UMRs (1.3% of the genome) are found greater than 2 kilobase pairs from genes. more... Organism: Zea mays Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20156 2 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638148 Series Accession: GSE152046 ID: 200152046 1456. A distinct subpopulation of follicular helper T (Tfh) cells promotes Tfr cell differentiation by producing Sostdc1 (Submitter supplied) By using RNA-sequencing assay on sorted Sostdc1-EGFP- Tfh, Sostdc1+ Tfh and Non-Tfh cells and single cell RNA-seq assay on sorted CD4+CD44+T cells from Sostdc1-EGFP reporter mice, support the conclusion that Sostdc1+ Tfh cells are a distinct subpopulation of Tfh cells.After performing the RNA-seq assessment and ATAC-seq on Tfr and Treg cells from WT and Sostdc1 KO mice,demonstrated that Sostdc1 ablation predominantly augmented β-catenin-controlled transcriptome, which in turn resulted in Tfr cell failure. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 11 Samples FTP download: GEO (BW, MTX, TSV, TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142523/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597323 Series Accession: GSE142523 ID: 200142523 1457. Loss of CBX2 induces genome instability and senescence-associated chromosomal rearrangements (Submitter supplied) Polycomb group proteins play important roles in developmental and cell proliferation processes. We demonstrate that the PRC1 protein CBX2 is critical for heterochromatin homeostasis, chromosome stability and the prevention of premature cellular senescence. Purpose: Use of Next-generation sequencing (NGS) to assess transcriptional (RNAseq) profiles and changes in chromatin accessibility in WT and Cbx2-/- fibroblasts prior to the onset of premature senescence. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL28457 GPL19057 8 Samples FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA657852 Series Accession: GSE156413 ID: 200156413 1458. Common schizophrenia risk variants are implicated in the function of glutamatergic neurons (Submitter supplied) The epigenome of human brain cells encompasses key information in understanding brain function in both healthy and diseased states. To further explore this, we used ATAC-seq to profile chromatin structure in four distinct populations of cells (glutamatergic neurons, GABAergic neurons, oligodendrocytes, and microglia/astrocytes), from three different regions of the brain. Chromatin accessibility was found to vary vastly by cell type and, more moderately, by brain region, with glutamatergic neurons showing the greatest regional variability. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 47 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601202 Series Accession: GSE143666 ID: 200143666 1459. TENET 2.0: Identification of key transcriptional regulators and enhancers in lung adenocarcinoma (Submitter supplied) To better understand the transcriptional regulators involved in the development of lung cancer, we used H3K27ac and open chromatin data to define enhancer regions which may be affected by differential transcriptional regulator activity. Additionally, we performed siRNA knockdown of key transcriptional regulators identified by our study followed by RNA-seq to identify potential downstream target genes of these regulators Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL24676 GPL11154 22 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA599095 Series Accession: GSE143145 ID: 200143145 1460. Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL21493 GPL24247 169 Samples FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128762/ Series Accession: GSE128762 ID: 200128762 1461. Neonatal hematopoietic stem and progenitor cell ontogeny at single cell resolution (ATAC-seq) (Submitter supplied) The goal of this study was to characterize the transcriptional changes that take place in hematopoietic stem and progenitor cells as they transit the neonatal period of development. These changes were observed at the single cell level and they are correlated with epigenome remodeling, as evidenced by the ATAC-seq and Chipmentation data (H3K4me1 and H3K27ac) in this data set. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 35 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528803 Series Accession: GSE128758 ID: 200128758 1462. YTHDF2/3 are required for somatic reprogramming through different RNA deadenylation pathways (Submitter supplied) N6-methyladenosine (m6A), the most abundant reversible modification on eukaryote messenger RNA, is recognized by a series of readers, including the YT521-B homology domain family (YTHDF) proteins, which are coupled to perform physiological functions. Here, we report that YTHDF2 and YTHDF3, but not YTHDF1, are required for reprogramming of somatic cells into induced pluripotent stem cells (iPSCs). Mechanistically, we found that YTHDF3 recruits the PAN2-PAN3 deadenylase complex and conduces to reprogramming by promoting mRNA clearance of somatic genes, including Tead2 and Tgfb1, which parallels the activity of the YTHDF2-CCR4-NOT deadenylase complex. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21273 84 Samples FTP download: GEO (BED, BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156437/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592060 Series Accession: GSE156437 ID: 200156437 1463. A genome assembly and the somatic genetic and epigenetic mutation rate in a wild long-lived perennial Populus trichocarpa [ATAC-Seq] (Submitter supplied) This research uses terminal branches from a wild poplar tree to track somatic genetic, epigenetic, and transcriptional changes. Using a multi-omics approach, we aim to identify and describe mutations which arise during the lifetime of a long-lived perennial plant. Organism: Populus trichocarpa Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL26322 15 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA549495 Series Accession: GSE132934 ID: 200132934 1464. Cancer-specific CTCF binding facilitates oncogenic transcriptional dysregulation (Submitter supplied) The three-dimensional genome organization is critical for gene regulation and can malfunction in diseases like cancer. As a key regulator of genome organization, CCCTC-binding factor (CTCF) has been characterized as a DNA-binding protein with important functions in maintaining the topological structure of chromatin and inducing DNA looping. Among the prolific binding sites in the genome, several events with altered CTCF occupancy have been reported as associated with effects in physiology or disease. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Methylation profiling by high throughput sequencing Platforms: GPL18573 GPL16791 92 Samples FTP download: GEO (BED, BW, COV, MATRIX, NARROWPEAK, SF, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA534089 Series Accession: GSE130140 ID: 200130140 1465. Subpopulations second heart field ATAC-seq (Submitter supplied) Profiling of open chromatin on second heart field subpopulations FACS sorted Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 7 Samples FTP download: GEO (XLS, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509774 Series Accession: GSE123765 ID: 200123765 1466. EED-mediated histone methylation is critical for CNS myelination and remyelination by inhibiting WNT, BMP and senescence pathways (Submitter supplied) PRC2 catalyzes tri-methylation of histone H3 lysine residue K27 (H3K27me3), and then H3K27me3 recruits downstream regulatory factors to create a transcriptionally repressive chromatin environment. PRC2 is involved in diverse biological processes, including cell growth, cell differentiation and the maintenance of cell identity. Here, to study the role of PRC2 on oligodendrocyte myelination and remyelination, we performed RNA-seq and ATAC-seq analysis of isolated control and Eed cKO mouse OPCs. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BED, FPKM_TRACKING, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA560396 Series Accession: GSE135880 ID: 200135880 1467. The Polycomb-Associated Factor Phf19 Controls Hematopoietic Stem Cell Status and Differentiation (Submitter supplied) Adult hematopoietic stem cells (HSCs) are rare, multipotent cells in bone marrow that are responsible for generating all blood cell types. HSCs are a heterogeneous group of cells with high plasticity, in part conferred by epigenetic mechanisms. PHF19, a subunit of the Polycomb repressive complex 2 (PRC2), is preferentially expressed in mouse hematopoietic precursors. Here, we show that genetic deletion of Phf19 increases HSC specific status. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL13112 14 Samples FTP download: GEO (BED, BEDGRAPH, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA558241 Series Accession: GSE135283 ID: 200135283 1468. Determination of dynamic changes in chromatin accessibilty during cellular reprogramming [scATAC] (Submitter supplied) Understanding the heterogeneity of cellular reprogramming process at a single-cell high resolution level. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 480 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA338877 Series Accession: GSE85580 ID: 200085580 1469. Map3k2-regulated intestinal stromal cells define a distinct intestine stem cell niche for tissue repair (Submitter supplied) intestinal mesenchymal stromal cell subset specific accessible elements were analyzed using ATAC-seq Bulk RNA-seq Purpose: The goals of this study are to compare WT and Map3k2 deficient mice colon tissue transcriptome upon Naive and DSS treatment for 1 day Bulk RNA-seq Methods: Colon Tissue mRNA profiles of Naive or 2% DSS treated 16-week-old wild-type (WT) and MEKK2 knockout (Map3k2-/-) mice were generated by deep sequencing, in triplicate, using Illumina NextSeq 500. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19057 GPL21273 21 Samples FTP download: GEO (BED, BW, MTX, RDS, TSV, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA595166 Series Accession: GSE156245 ID: 200156245 1470. Cop1 wildtype and knockout ATAC-seq in BMDMs (Submitter supplied) The realization in the last decade that dysregulated microglia are intimately involved in Alzheimer’s disease (AD) pathogenesis has been a major advance. The precise mechanisms controlling pathogenic programs of microglia gene expression, however, remain poorly understood. The transcription factor (TF) c/EBPß is highly expressed in microglia and is known to regulate expression of pro-inflammatory genes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA615357 Series Accession: GSE147557 ID: 200147557 1471. ATAC-Seq Data of Adipose Stem Cells from Subcutaneouse Adipose Tissue of Normal-Weight Polycystic Ovary Syndrome Women Undergoing Adipogenesis in vitro (Submitter supplied) In previous studies, multiple animal models (rhesus monkeys, sheep) have suggested a developmental programming effect of PCOS. The goal of this study was to examine whether developmental programming may accompany epigenetic changes by examining intrinsic epigenetic differences, specifically chromatin accessibility, in adipose stem cells (ASCs) from subcutaneous (SC) adipose tissue of PCOS women vs age- and BMI-matched control samples as they mature into adipocytes in vitro. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 18 Samples FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE156nnn/GSE156140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA656827 Series Accession: GSE156140 ID: 200156140 1472. Erythrophagocytosis drives anti-inflammatory programming of liver macrophages (ATAC-seq) (Submitter supplied) Under conditions of erythrolytic stress, which accompanies many disease states, macrophages play key roles in phagocytosing damaged RBCs and preventing the toxic effects of cell-free hemoglobin and heme to maintain homeostasis. Using a genetic mouse model of spherocytosis and single-cell RNA sequencing, we show that erythrolytic stress promotes expansion of a specific macrophage population in the liver (which we named “erythrophagocytes”) expressing high levels of Marco and Hmox1 and low levels of MHC class II related genes with an anti-inflammatory gene expression signature. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (CSV, H5, RDS, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635691 Series Accession: GSE151408 ID: 200151408 1473. An endogenous retrovirus-derived long non-coding RNA promotes fetal cardiomyocyte migration in primates (Submitter supplied) The protein-coding gene networks regulating heart development are well known. Less understood are the roles of long non-coding RNAs (lncRNAs), many of which are poorly conserved due to their origins from transposable elements (TEs) such as endogenous retroviruses (ERVs). Here, we report hundreds of ERV elements from the primate-specific MER41 family are expressed in pluripotent cell-derived cardiomyocytes and fetal heart, some of which are regulated by the cardiogenic transcription factor TBX5. more... Organism: Gorilla gorilla; Mus musculus; Homo sapiens; Macaca mulatta; Pan troglodytes Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 7 related Platforms 60 Samples FTP download: GEO (BW, HIC, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA438592 Series Accession: GSE111930 ID: 200111930 1474. STAT5 is a pioneer factor for BATF-mediated plasticity at the Il9 locus [ATAC-Seq] (Submitter supplied) BATF requires the STAT5 signal to mediate plasticity at the Il9 locus. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 6 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607448 Series Accession: GSE145512 ID: 200145512 1475. ATAC-Seq of RSV infected small airway epithelial cells (Submitter supplied) We sought to identify transcriptionally active open chromatin domains in highly differentiated lower airway epithelial cells using transposase cleavage -next generation sequencing (ATAC-Seq). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA655849 Series Accession: GSE155857 ID: 200155857 1476. Identification of open chromatin regions in three different tissues of Oikopleura dioica (Submitter supplied) ATAC-seq was used to locate putative enhancer regions in the early development (tailbud stage), developing male and female gonads of the marine chrodate Oikopleura dioica. Organism: Oikopleura dioica Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL28972 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA655546 Series Accession: GSE155772 ID: 200155772 1477. Distinct Contribution of DNA Methylation and Histone Acetylation to the Genomic Occupancy of Transcription Factors (Submitter supplied) DNA methylation has been shown to act by directly modulating transcription factor affinity to DNA binding sites and by recruiting methyl-CpG binding proteins, which form complexes with histone deacetylases (HDACs). Both mechanisms can affect gene regulation, but the extent to which HDACs contribute to the function of DNA methylation and transcription factor occupancy is not clear. To address this question we measured gene expression alterations, chromatin accessibility and transcription factor occupancy in wild type or DNA methylation-deficient mouse embryonic stem cells following HDAC inhibition. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing Platforms: GPL13112 GPL21103 126 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543349 Series Accession: GSE131366 ID: 200131366 1478. Distinct Regulatory Programs Control the Latent Regenerative Potential of Dermal Fibroblasts during Wound Healing (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 17 Samples FTP download: GEO (BED, H5, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155678/ Series Accession: GSE155678 ID: 200155678 1479. Single-cell ATAC-Seq of cells recruited to regenerative portions of large skin wounds. (Submitter supplied) Adult mammalian skin wound healing is typically accompanied by a fibrotic scar that impairs normal skin function and regeneration of skin appendages. Interestingly, however, in adult mice, large skin injuries exhibit de novo formation of hair follicles (HFs, a phenomenon termed wound-induced HF neogenesis) in the center of the wound. Our previous analysis provides compelling evidence suggesting that regional epigenetic changes within the mesenchymal cells of the skin may underlie the divergent response to wound healing. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 1 Sample FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544117 Series Accession: GSE131600 ID: 200131600 1480. Inflammatory Signals induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration (Submitter supplied) Tissue regeneration is a multi-step process mediated by diverse cellular hierarchies and states that are also implicated in tissue dysfunction and pathogenesis. Here, we leveraged single-cell RNA sequencing in combination with in vivo lineage tracing and organoid models to finely map the trajectories of alveolar lineage cells during injury repair and lung regeneration. We identified a distinct AT2-lineage population, Damage-Associated Transient Progenitors (DATPs), that arises during alveolar regeneration. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605766 Series Accession: GSE145031 ID: 200145031 1481. Inflammatory Signals induce AT2 Cell-Derived Damage-Associated Transient Progenitors that Mediate Alveolar Regeneration (Submitter supplied) Tissue regeneration is a multi-step process mediated by diverse cellular hierarchies and states that are also implicated in tissue dysfunction and pathogenesis. Here, we leveraged single-cell RNA sequencing in combination with in vivo lineage tracing and organoid models to finely map the trajectories of alveolar lineage cells during injury repair and lung regeneration. We identified a distinct AT2-lineage population, Damage-Associated Transient Progenitors (DATPs), that arises during alveolar regeneration. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604180 Series Accession: GSE144598 ID: 200144598 1482. Opa is a late-acting, pioneer factor that coordinates with Zelda to broadly regulate gene expression in early embryos (ATAC-seq, RNA-seq) (Submitter supplied) Pioneer factors such as Zelda (Zld) help initiate zygotic transcription in Drosophila early embryos, but whether other factors support this dynamic process is unclear. Odd-paired (Opa), a zinc-finger transcription factor expressed at cellularization, controls the transition of genes from pair-rule to segmental patterns along the anterior-posterior axis. Finding that Opa also regulates expression through enhancer sog_Distal along the dorso-ventral axis, we hypothesized Opa’s role is more general. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL25244 16 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA642236 Series Accession: GSE153328 ID: 200153328 1483. Opa is a late-acting, pioneer factor that coordinates with Zelda to broadly regulate gene expression in early embryos (ChIP-seq, ATAC-seq) (Submitter supplied) Pioneer factors such as Zelda initiate zygotic transcription within Drosophila early embryos, but whether other factors also support this dynamic patterning process is unclear. Odd-paired (Opa) is a zinc-finger transcription factor expressed during cellularization, shown to act as timing factor to control pair-rule to segmental patterning transition along the anterior-posterior (AP) axis. We found Opa regulates expression through an enhancer active along the dorso-ventral axis (sog_Distal), specifically, to support its late embryonic expression. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17275 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590698 Series Accession: GSE140722 ID: 200140722 1484. Epigenetic basis for monocyte dysfunction in acute-on-chronic liver failure and alcoholic hepatitis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Other; Expression profiling by high throughput sequencing Platform: GPL24676 29 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135286/ Series Accession: GSE135286 ID: 200135286 1485. Epigenetic basis for monocyte dysfunction in acute-on-chronic liver failure and alcoholic hepatitis [ATAC-seq] (Submitter supplied) BACKGROUND/ AIMS: Severe forms of alcoholic liver disease are associated with increased susceptibility to infections largely due to immune dysfunction. In this study, we analyze the phenotypic, molecular and functional profiles of the mononuclear phagocyte system of patients with cirrhosis, severe alcoholic hepatitis (sAH) or acute-on-chronic liver failure (ACLF). RESULTS: sAH and ACLF patients display a severe impairment of the TH1-promoting IL-12p70/IFNgamma/CXCL10 axis. more... Organism: Homo sapiens Type: Other Platform: GPL24676 15 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA558249 Series Accession: GSE135284 ID: 200135284 1486. Coactivation of NF-kB and Notch signaling is sufficient to induce B cell transformation and enables B-myeloid conversion (Submitter supplied) Comparison of chromatin accessibility between NF-kB and Notch coactivated marginal zone precursor (MZP) B cells and converted myeloid cells from these B cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562513 Series Accession: GSE136408 ID: 200136408 1487. scRNA-seq of P2 mouse cochlea (Submitter supplied) Age-related hearing impairment (ARHI), one of the most common medical conditions, is strongly heritable, yet its genetic causes remain largely unknown. We conducted a meta-analysis of GWAS summary statistics from multiple hearing-related traits in the UK Biobank (n = up to 323,978) and identified 31 genome-wide significant risk loci for self-reported hearing difficulty (p < 5e-8), of which 30 have not been reported previously at genome-wide significance. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 1 Sample FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559884 Series Accession: GSE135737 ID: 200135737 1488. DOT1L-mediated Murine Neuronal Differentiation associates with H3K79me2 Accumulation and preserves SOX2-Enhancer Accessibility (Submitter supplied) To study whether acute inhibition of DOT1L induces global chromatin states alterations, we profile and compare the transcriptome, chromatin accessibility and epigenome (H3K4me3, H3K4me1, H3K27ac, H3K27me3, H3K36me3, H3K9me3, H3K79me2) of mESC and ES-derived NPC, treated with DMSO or EPZ5676. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL24247 86 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA558383 Series Accession: GSE135318 ID: 200135318 1489. Transcriptomic and Chromatin accessibility profiling of functional brown adipocytes derived from human pluripotent stem cells (Submitter supplied) Brown adipocytes (BAs) are a potential therapeutic cell source for the treatment of metabolic disease such as type 2 diabetes. In this report, human pluripotent stem cells (hPSCs) are subject to directed differentiation to brown dipocytes through a paraxial mesoderm intermediate at high-efficiency. RNA-Seq and ATAC-seq was performed to characterized hPSCs derived paraxial mesoderm and brown adipocytes generated in this study. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 23 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542809 Series Accession: GSE131169 ID: 200131169 1490. Transcriptomic and epigenomic dynamics associated with development of human iPSC-derived GABAergic interneurons (Submitter supplied) GABAergic interneurons (GINs) are a heterogeneous class of inhibitory neurons that collectively maintain normal neuronal excitability and network activity. Identification of the genetic regulatory elements and transcription factors that contribute toward GIN function may provide new insight into the pathways underlying proper GIN activity, while also indicating potential therapeutic targets for GIN-associated disorders, such as epilepsy and schizophrenia. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL18573 25 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145073/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605871 Series Accession: GSE145073 ID: 200145073 1491. ATAC-seq of wild type and Stat3-deficient or Rorgt-deficient Th17 cells (Submitter supplied) STAT3 has a more profound effect on chromatin accessibility regulation than RORgt during Th17 cell differentiation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153442/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA642729 Series Accession: GSE153442 ID: 200153442 1492. The hepatocyte clock and feeding control chronophysiology of multiple liver cell types (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 178 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143528/ Series Accession: GSE143528 ID: 200143528 1493. The Hepatocyte Clock and Feeding Interdependently Control Chrono-Homeostasis of Multiple Liver Cell Types (single nuclei RNA-seq) (Submitter supplied) Most cells in the body contain a cell autonomous molecular clock, but the requirement of peripheral clocks for circadian rhythmicity, and their effects on physiology, are not well understood. Here we show that deletion of core clock components REV-ERBa and b in adult mouse hepatocytes caused the loss of circadian rhythmicity of many liver genes, as expected, but also led to maintained and even gained rhythmicity of other genes without altering feeding behavior. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600890 Series Accession: GSE143526 ID: 200143526 1494. The Hepatocyte Clock and Feeding Interdependently Control Chrono-Homeostasis of Multiple Liver Cell Types (ATAC-seq) (Submitter supplied) Most cells in the body contain a cell autonomous molecular clock, but the requirement of peripheral clocks for circadian rhythmicity, and their effects on physiology, are not well understood. Here we show that deletion of core clock components REV-ERBa and b in adult mouse hepatocytes caused the loss of circadian rhythmicity of many liver genes, as expected, but also led to maintained and even gained rhythmicity of other genes without altering feeding behavior. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 32 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600891 Series Accession: GSE143525 ID: 200143525 1495. The Hepatocyte Clock and Feeding Interdependently Control Chrono-Homeostasis of Multiple Liver Cell Types (RNA-seq) (Submitter supplied) Most cells in the body contain a cell autonomous molecular clock, but the requirement of peripheral clocks for circadian rhythmicity, and their effects on physiology, are not well understood. Here we show that deletion of core clock components REV-ERBa and b in adult mouse hepatocytes caused the loss of circadian rhythmicity of many liver genes, as expected, but also led to maintained and even gained rhythmicity of other genes without altering feeding behavior. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 144 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600892 Series Accession: GSE143524 ID: 200143524 1496. Transcriptional regulation of human αβ and γδ T cell development is driven by distinct and temporary-restricted epigenetic mechanism (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 147 Samples FTP download: GEO (BED, BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151081/ Series Accession: GSE151081 ID: 200151081 1497. ATACseq of 11 subsets of human postnatal developing thymocytes (Submitter supplied) The generation of TCRαβ and TCRγδ T cells proceeds through distinct developmental stages in which changing regulatory events control differentiation and lineage outcome. To clarify the underlying mechanisms, we employed RNAseq, ATACseq and ChIPmentation on well-defined thymocyte subsets that represent the continuum of human T cell development. The chromatin accessibility dynamics uncover stage-specific regulatory mechanisms and reveal that human T-lineage commitment is marked by the GATA3- and BCL11B-dependent closing of PU.1 sites. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 23 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA634552 Series Accession: GSE151075 ID: 200151075 1498. The role of TCF7L2 rs290487 variant in hepatic glucose metabolism: an integrated analysis of clinical and multi-omics data (Submitter supplied) TCF7L2 rs290487 C allele increases diabetic risk in Chinese, however the mechanism remains unclear. We herein evaluated the role of rs290487 variant in hepatic glucose homeostasis by integrating clinical and multi-omics data (ChIP-seq, ATAC-seq, RNA-seq, and metabolomics) from CRISPR/Cas9 edited PLC-PRF-5 cell lines (C/C vs. C/T). In clinical cohort, C/C genotype was associated with higher insulin resistance index and higher incidence of hepatogenous diabetes as compared to C/T heterozygote and T/T homozygote genotypes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA577123 Series Accession: GSE138781 ID: 200138781 1499. ATAC-seq datasets for chromatin accessibility quantification in "Enhancer RNAs predict enhancer-gene regulatory links and are critical for enhancer function in neuronal systems" (Submitter supplied) This dataset contains Assay for Transposase-Accessible Chromatin (ATAC) sequencing results from rat embryonic cortical, hippocampal, and striatal neuronal cultures treated with either vehicle (complete Neurobasal media) or potassium chloride (10mM) for 1hr. Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20084 18 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632876 Series Accession: GSE150589 ID: 200150589 1500. Enhancer-associated H3K4 methylation safeguards in vitro germline competence (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 118 Samples FTP download: GEO (BEDGRAPH, BIGWIG, COV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155089/ Series Accession: GSE155089 ID: 200155089 1501. Enhancer-associated H3K4 methylation safeguards in vitro germline competence [scRNA-seq] (Submitter supplied) Germline specification in mammals occurs through an inductive process whereby competent cells in the post-implantation epiblast differentiate into primordial germ cells (PGC). The intrinsic factors that endow epiblast cells with the competence to respond to germline inductive signals remain unknown. Single-cell RNA sequencing across multiple stages of an in vitro PGC-like cells (PGCLC) differentiation system shows that PGCLC genes initially expressed in the naïve pluripotent stage become homogeneously dismantled in germline competent epiblast like-cells (EpiLC). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (CLOUPE, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155088/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648402 Series Accession: GSE155088 ID: 200155088 1502. Enhancer-associated H3K4 methylation safeguards in vitro germline competence [WGBS] (Submitter supplied) Germline specification in mammals occurs through an inductive process whereby competent cells in the post-implantation epiblast differentiate into primordial germ cells (PGC). The intrinsic factors that endow epiblast cells with the competence to respond to germline inductive signals remain unknown. Single-cell RNA sequencing across multiple stages of an in vitro PGC-like cells (PGCLC) differentiation system shows that PGCLC genes initially expressed in the naïve pluripotent stage become homogeneously dismantled in germline competent epiblast like-cells (EpiLC). more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (COV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648395 Series Accession: GSE155083 ID: 200155083 1503. Enhancer-associated H3K4 methylation safeguards in vitro germline competence [RNA-seq] (Submitter supplied) Germline specification in mammals occurs through an inductive process whereby competent cells in the post-implantation epiblast differentiate into primordial germ cells (PGC). The intrinsic factors that endow epiblast cells with the competence to respond to germline inductive signals remain unknown. Single-cell RNA sequencing across multiple stages of an in vitro PGC-like cells (PGCLC) differentiation system shows that PGCLC genes initially expressed in the naïve pluripotent stage become homogeneously dismantled in germline competent epiblast like-cells (EpiLC). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648386 Series Accession: GSE155079 ID: 200155079 1504. Enhancer-associated H3K4 methylation safeguards in vitro germline competence [ChIP-seq 2] (Submitter supplied) Germline specification in mammals occurs through an inductive process whereby competent cells in the post-implantation epiblast differentiate into primordial germ cells (PGC). The intrinsic factors that endow epiblast cells with the competence to respond to germline inductive signals remain unknown. Single-cell RNA sequencing across multiple stages of an in vitro PGC-like cells (PGCLC) differentiation system shows that PGCLC genes initially expressed in the naïve pluripotent stage become homogeneously dismantled in germline competent epiblast like-cells (EpiLC). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 44 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155069/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648384 Series Accession: GSE155069 ID: 200155069 1505. Enhancer-associated H3K4 methylation safeguards in vitro germline competence [ChIP-seq 1] (Submitter supplied) Germline specification in mammals occurs through an inductive process whereby competent cells in the post-implantation epiblast differentiate into primordial germ cells (PGC). The intrinsic factors that endow epiblast cells with the competence to respond to germline inductive signals remain unknown. Single-cell RNA sequencing across multiple stages of an in vitro PGC-like cells (PGCLC) differentiation system shows that PGCLC genes initially expressed in the naïve pluripotent stage become homogeneously dismantled in germline competent epiblast like-cells (EpiLC). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 42 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155062/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648371 Series Accession: GSE155062 ID: 200155062 1506. Enhancer-associated H3K4 methylation safeguards in vitro germline competence [ATAC-seq] (Submitter supplied) Germline specification in mammals occurs through an inductive process whereby competent cells in the post-implantation epiblast differentiate into primordial germ cells (PGC). The intrinsic factors that endow epiblast cells with the competence to respond to germline inductive signals remain unknown. Single-cell RNA sequencing across multiple stages of an in vitro PGC-like cells (PGCLC) differentiation system shows that PGCLC genes initially expressed in the naïve pluripotent stage become homogeneously dismantled in germline competent epiblast like-cells (EpiLC). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 7 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648362 Series Accession: GSE155058 ID: 200155058 1507. Enhancer-associated H3K4 methylation safeguards in vitro germline competence [4C-seq] (Submitter supplied) Germline specification in mammals occurs through an inductive process whereby competent cells in the post-implantation epiblast differentiate into primordial germ cells (PGC). The intrinsic factors that endow epiblast cells with the competence to respond to germline inductive signals remain unknown. Single-cell RNA sequencing across multiple stages of an in vitro PGC-like cells (PGCLC) differentiation system shows that PGCLC genes initially expressed in the naïve pluripotent stage become homogeneously dismantled in germline competent epiblast like-cells (EpiLC). more... Organism: Mus musculus Type: Other Platform: GPL17021 3 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE155nnn/GSE155015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA648154 Series Accession: GSE155015 ID: 200155015 1508. The transcription factor BCL6 controls early development of innate-like T cells (ATAC-seq) (Submitter supplied) Innate T cells, including invariant natural killer T (iNKT) and mucosal-associated innate T (MAIT) cells, are a heterogeneous T lymphocyte population with effector properties pre-programmed during their thymic differentiation. How this program is initiated is currently unclear. Here, we show that the transcription factor BCL6 is transiently expressed in iNKT cells upon exit from positive selection and is required for their proper development beyond stage 0. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554325 Series Accession: GSE134210 ID: 200134210 1509. Single-cell epigenomic identification of inherited risk loci in Alzheimer’s and Parkinson’s disease (Submitter supplied) Genome-wide association studies (GWAS) have identified thousands of variants associated with disease phenotypes. However, the majority of these variants do not alter coding sequences, making it difficult to assign their function. To this end, we present a multi-omic epigenetic atlas of the adult human brain through profiling of the chromatin accessibility landscapes and three-dimensional chromatin interactions of seven brain regions across a cohort of 39 cognitively healthy individuals. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL24676 GPL20301 162 Samples FTP download: GEO (BED, BIGWIG, NARROWPEAK, RDS, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA616031 Series Accession: GSE147672 ID: 200147672 1510. Landscape of Cohesin-Mediated Chromatin Loops in the Human Genome (ATAC-seq) (Submitter supplied) Physical interactions between distal regulatory elements in the genome play a key role in regulating gene expression, yet the extent to which these interactions vary between cell types and contribute to cell type-specific gene expression patterns remains unclear. To address this question we have mapped cohesin-bound chromatin loops in 24 diverse human cell types at high resolution using the chromatin interaction analysis by paired-end tag (ChIA-PET) sequencing approach. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 36 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA578382 Series Accession: GSE139099 ID: 200139099 1511. Landscape of Cohesin-Mediated Chromatin Loops in the Human Genome (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL11154 126 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134745/ Series Accession: GSE134745 ID: 200134745 1512. Landscape of Cohesin-Mediated Chromatin Loops in the Human Genome (ChIP-Seq) (Submitter supplied) Physical interactions between distal regulatory elements in the genome play a key role in regulating gene expression, yet the extent to which these interactions vary between cell types and contribute to cell type-specific gene expression patterns remains unclear. To address this question we have mapped cohesin-bound chromatin loops in 24 diverse human cell types at high resolution using the chromatin interaction analysis by paired-end tag (ChIA-PET) sequencing approach. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 44 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556257 Series Accession: GSE134744 ID: 200134744 1513. Atg7-dependent autophagy regulates the naive to primed transition by selective Nanog degradation in mouse embryonic stem cells [WGBS] (Submitter supplied) Autophagy is a conserved cellular mechanism to degrade unwanted cytoplasmic proteins and organelles to recycle their components, and it is proved to be critical for embryonic stem cell (ESC) self-renewal and somatic cell reprogramming. However, the role of autophagy in embryonic development remains elusive, and no information exists regarding its functions during the transition from naive to primed pluripotency. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL21273 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA647750 Series Accession: GSE154860 ID: 200154860 1514. Role of the histone demethylase Kdm6b/Jmjd3 in somatic cell reprogramming [ATAC-Seq] (Submitter supplied) Somatic cells can be reprogrammed to pluripotent stem cells through the addition of just four transcription factors, OCT4, SOX2, KLF4 and c-MYC (OSKM). Although OSKM initiates reprogramming it is clear that extensive epigenetic remodeling is required to complete reprogramming. Critically, OSKM do not directly activate gene expression but instead recruit co-activators and co-repressors that remodel the local chromatin and in some way make the cells permissive for reprogramming. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA628934 Series Accession: GSE149500 ID: 200149500 1515. Role of the histone demethylase Kdm6b/Jmjd3 in somatic cell reprogramming (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL24247 GPL17021 57 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75005/ Series Accession: GSE75005 ID: 200075005 1516. Tousled-like kinase activity is required for transcriptional silencing and suppression of innate immune signaling [HeLa ATAC-Seq] (Submitter supplied) The Tousled like kinases 1 and 2 (TLK1/2) control histone deposition through the ASF1 histone chaperones and are regulated by the DNA damage response. Depletion of TLK activity caused replication stress, increased chromosomal instability and cell arrest or death. Here, we show that stalled forks in TLK depleted cells are processed by BLM, SAMHD1 and the MRE11 nuclease to generate ssDNA and activate checkpoint signaling. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542333 Series Accession: GSE131022 ID: 200131022 1517. Tousled-like kinase activity is required for transcriptional silencing and suppression of innate immune signaling [U2OS ATAC-Seq] (Submitter supplied) The Tousled like kinases 1 and 2 (TLK1/2) control histone deposition through the ASF1 histone chaperones and are regulated by the DNA damage response. Depletion of TLK activity caused replication stress, increased chromosomal instability and cell arrest or death. Here, we show that stalled forks in TLK depleted cells are processed by BLM, SAMHD1 and the MRE11 nuclease to generate ssDNA and activate checkpoint signaling. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542335 Series Accession: GSE131020 ID: 200131020 1518. The Human Integrator Complex Facilitates Transcriptional Elongation by Endonucleolytic Cleavage of Nascent Transcripts (Submitter supplied) Transcription by RNA polymerase II (RNAPII) is pervasive in the human genome. However, the mechanisms controlling transcription at promoters and enhancers remain enigmatic. Here, we demonstrate that Integrator subunit 11 (INTS11), the catalytic subunit of the Integrator complex, regulates transcription at these loci through its endonuclease activity. Promoters of genes require INTS11 to cleave nascent transcripts associated with paused RNAPII and induce their premature termination in the proximity of the +1 nucleosome. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing Platform: GPL18573 70 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA516697 Series Accession: GSE125534 ID: 200125534 1519. Tissue Regeneration Enhancer Element Discovery by Chromatin Accessibility Profiling of Regenerating Zebrafish Fins (Submitter supplied) Mammalian genomes likely encode all gene products required to regenerate an amputated limb, yet they lack the correct instructions for strategically modulating those gene products to accomplish limb regeneration. Zebrafish and many other non-mammalian vertebrates possess these instructions, which exist as gene cis-regulatory elements. Here, to identify candidate tissue regeneration enhancer elements (TREEs) important for zebrafish fin regeneration, we performed ATAC-seq from bulk tissue or purified fibroblasts of uninjured and regenerating caudal fins. more... Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21741 36 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA612515 Series Accession: GSE146960 ID: 200146960 1520. Genome-wide profiling for H2A.Z and genome accessibility in in Uhrf1hepKO mouse livers (Submitter supplied) This study was carried out to investigate potential changes in the genome-wide distribution of h2az and genome accessibility in Uhrf1hepKO mouse livers compared to wild-type. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BROADPEAK, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641416 Series Accession: GSE153090 ID: 200153090 1521. IL6/STAT3 co-opts ER/FOXA1 regulatory elements to drive metastasis in breast cancer [ATAC-Seq] (Submitter supplied) Interleukin 6 (IL6) signaling has been associated with an aggressive and metastatic phenotype in multiple solid tumors including breast cancer, but its mechanism of action in mediating tumor progression and treatment response is not clear. By exploiting a clinically relevant intraductal xenograft model of estrogen receptor positive (ER+) breast cancer, we demonstrate that IL6 increases both primary tumor growth and distant metastases. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631243 Series Accession: GSE150131 ID: 200150131 1522. Dysregulation of PDGFRB contributes to the pathogenesis of LMNA-related dilated cardiomyopathy (Submitter supplied) Purpose: LMNA-DCM accounts for 5-10% of DCM cases and has an age-related penetrance whose onset typically appears between the ages of 30 and 40. However, the precise mechanisms linking the LMNA mutation to increased arrhythmogenicity are still unknown. Methods: We utilized human iPSC-CMs, hESC-CMs, and cardiac tissues with RNA-seq, ChIP-seq, and ATAC-seq technologies. Results: The electrophysiological studies of iPSC-CMs identify the LMNA mutation as a cause of increased arrhythmogenicity in mutant iPSC-CMs through abnormal calcium homeostasis. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17303 GPL16791 GPL18573 12 Samples FTP download: GEO (BED, BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394714 Series Accession: GSE101514 ID: 200101514 1523. Super-Enhancer-Associated Aortic Valve Stenosis Risk Locus 1p21.2 Alters NFATC2 Binding Site and Promotes Fibrogenesis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL20301 GPL24676 8 Samples FTP download: GEO (BW, HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154513/ Series Accession: GSE154513 ID: 200154513 1524. Super-Enhancer-Associated Aortic Valve Stenosis Risk Locus 1p21.2 Alters NFATC2 Binding Site and Promotes Fibrogenesis [ATAC-Seq] (Submitter supplied) Genome-wide association studies identified a strong signal for non coding variants at the 1p21.2 locus associated with calcific aortic valve stenosis (CAVS). Regulation at the locus and impact on the biology of the aortic valve is presently unknown. Integrative mapping of genetic association data was performed. The locus was evaluated by 3D genome mapping, analysis of atomic resolution data, DNA-binding assay and CRISPR activation (CRISPRa). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA646507 Series Accession: GSE154510 ID: 200154510 1525. Differential contribution of p300 and CBP to regulatory elements in mESCs (Submitter supplied) In this study we analyze the individual contribution of p300 and CBP to the H3K27ac landscape, chromatin accessibility, and transcription in mESC. This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 31 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138925/ Series Accession: GSE138925 ID: 200138925 1526. Differential contribution of p300 and CBP to regulatory elements in mESCs [ATAC-seq] (Submitter supplied) In this study we analyze the individual contribution of p300 and CBP to the H3K27ac landscape, chromatin accessibility, and transcription in mESC. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA577736 Series Accession: GSE138923 ID: 200138923 1527. E2A Specifies Adaptive Immunity by Instructing Large-Scale Topological Changes (Submitter supplied) Analysis of epigenetics and chromatin structure in lymphocyte development Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other 4 related Platforms 62 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592719 Series Accession: GSE141223 ID: 200141223 1528. N6-methyladenine in DNA antagonizes SATB1 in early development [ATAC-seq] (Submitter supplied) The recent discovery of N6-methyladenine (N6-mA) in mammalian genomes suggests that it may serve as an epigenetic regulatory mechanism. However, the biological role of N6-mA and the molecular pathways that exert its function remain unclear. Here we show that N6-mA has a key role in changing the epigenetic landscape during cell fate transitions in early development. We found that N6-mA is upregulated during the development of mouse trophoblast stem cells, specifically at regions of stress-induced DNA double helix destabilization (SIDD). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521354 Series Accession: GSE126223 ID: 200126223 1529. Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs: Subseries 10 [Figure 7, ATAC-seq] (Submitter supplied) Cell-fate conversion generally presumes the activity of reprogramming effectors to both introduce fate programs of the target cell type and erase the identity of starting cell population. Here, we reveal novel insights into the activity of microRNAs, miR-9/9* and miR-124 (miR-9/9*-124) as reprogramming agents that orchestrate direct conversion of human fibroblasts by first eradicating fibroblast identity and promoting uniform transition to a neuronal state in sequence. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA645955 Series Accession: GSE154366 ID: 200154366 1530. Deconstructing Stepwise Fate Conversion of Human Fibroblasts to Neurons by MicroRNAs: Subseries 5 [Figure 3, ATAC-seq] (Submitter supplied) Cell-fate conversion generally presumes the activity of reprogramming effectors to both introduce fate programs of the target cell type and erase the identity of starting cell population. Here, we reveal novel insights into the activity of microRNAs, miR-9/9* and miR-124 (miR-9/9*-124) as reprogramming agents that orchestrate direct conversion of human fibroblasts by first eradicating fibroblast identity and promoting uniform transition to a neuronal state in sequence. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE154nnn/GSE154361/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA645948 Series Accession: GSE154361 ID: 200154361 1531. ChIP-Seq for FOXA2 in PC3 cell line with GSK treatment and VEH control (Submitter supplied) We show in prostate cancer cells that LSD1 co-localizes with FOXA1 and active enhancer markers, and that LSD1 inhibition globally disrupts FOXA1 chromatin binding. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627123 Series Accession: GSE148982 ID: 200148982 1532. ATAC-Seq in LNCaP cell line with GSK treatment and VEH control (Submitter supplied) We show in prostate cancer cells that LSD1 co-localizes with FOXA1 and active enhancer markers, and that LSD1 inhibition globally disrupts FOXA1 chromatin binding. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627126 Series Accession: GSE148925 ID: 200148925 1533. Inhibiting YAP1 in hepatoblastoma drives therapeutic differentiation of tumor cells to functional hepatocyte-like cells (Submitter supplied) Despite advances in surgical care and chemotherapeutic regimens, the five-year survival rate for Stage IV Hepatoblastoma (HB), the predominant pediatric liver tumor, remains at 27%. YAP1 and β-Catenin co-activation occur in 80% of children’s HB; however, a lack of conditional genetic models precludes exploration of tumor maintenance and therapeutic targets. Thus, the clinical need for a targeted therapy remains unmet. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL19057 22 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA610842 Series Accession: GSE146548 ID: 200146548 1534. Mutant Kras co-opts a progenitor-derived enhancer network to initiate pancreatic tumorigenesis [ATAC-seq] (Submitter supplied) Oncogenes are highly specific in the cells they can transform, although the molecular basis for this is poorly understood. Inflammation often promotes tumorigenesis, and in the pancreas it promotes cellular plasticity and accelerates Kras-driven neoplasia. We demonstrate that plasticity is coupled to the emergence of transient progenitor cells that are readily transformed by KrasG12D. The progenitor state is linked to coordinate upregulation of proliferation genes through chromatin opening at nearby lineage-specific enhancers. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 28 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554362 Series Accession: GSE134230 ID: 200134230 1535. Molecular structures and mechanisms of DNA break processing in mouse meiosis (Submitter supplied) Exonucleolytic resection is a critical step in repair of DNA double-strand breaks (DSBs) via homologous recombination, but resection mechanisms are not well understood, particularly in mammalian meiosis. Here, we use a genome-wide, nucleotide-resolution analysis to define the molecular structure of resected DSBs in mouse spermatocytes. Resection tracts averaged 1100 nucleotides on each side of a DSB, but with a broad distribution and substantial fine-scale heterogeneity at individual hotspots. more... Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 34 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141850/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594962 Series Accession: GSE141850 ID: 200141850 1536. Single-cell analysis of gene expression variation and phenotype switching in melanoma (Submitter supplied) We combine extensive profiling of single-cell gene expression (scRNA-seq of 39,263 cells) and chromatin accessibility applied to ten genetically-homogeneous, patient-derived melanoma cultures, to examine intra- and intertumoral phenotypic heterogeneity, to identify new cell states, and to track dynamic transitions at single-cell resolution. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 94 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555083 Series Accession: GSE134432 ID: 200134432 1537. Characterization of the chromatin accessibility in an Alzheimer’s disease (AD) mouse model (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145908/ Series Accession: GSE145908 ID: 200145908 1538. Characterization of the chromatin accessibility in an Alzheimer’s disease (AD) mouse model (RNA-Seq) (Submitter supplied) The assay for transposase-accessible chromatin by sequencing (ATAC-seq) was used to investigate the AD-associated chromatin reshaping in the APPswe/PS1dE9 (APP/PS1) mouse model. ATAC-seq data in the hippocampus of 8-month-old APP/PS1 mice were generated, and the relationship between chromatin accessibility and gene expression was analyzed in combination with RNA-sequencing.We identified 1690 increased AD-associated chromatin accessible regions in the hippocampal tissues of APP/PS1 mice and 1003 decreased chromatin accessible regions were considered to be related with declined AD-associated biological processes.In the APP/PS1 hippocampus, 1090 genes were found to be up-regulated and 1081 down-regulated. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145907/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608711 Series Accession: GSE145907 ID: 200145907 1539. Characterization of the chromatin accessibility in an Alzheimer’s disease (AD) mouse model (ATAC-Seq) (Submitter supplied) The assay for transposase-accessible chromatin by sequencing (ATAC-seq) was used to investigate the AD-associated chromatin reshaping in the APPswe/PS1dE9 (APP/PS1) mouse model. ATAC-seq data in the hippocampus of 8-month-old APP/PS1 mice were generated, and the relationship between chromatin accessibility and gene expression was analyzed in combination with RNA-sequencing.We identified 1690 increased AD-associated chromatin accessible regions in the hippocampal tissues of APP/PS1 mice and 1003 decreased chromatin accessible regions were considered to be related with declined AD-associated biological processes.In the APP/PS1 hippocampus, 1090 genes were found to be up-regulated and 1081 down-regulated. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145906/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608708 Series Accession: GSE145906 ID: 200145906 1540. ATAC-Seq of human early thymopoieisis (Submitter supplied) Four sorted human thymic subpopulations (CD34+1a-7+, CD34+1a+, EC, LC) from two donors were used for ATAC-Seq. Samples were sequenced in house in single-end 75nt mode using the NextSeq® 500/550 (Illumina) according to manufacturer’s instructions. Reads were trimmed with sickle and aligned with bowtie2 using default settings. Aligned reads from tCD34+1a-7+ and tCD34+1a+ populations from the two donors were merged to generate the tCD34 ATAC sample. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA566134 Series Accession: GSE137640 ID: 200137640 1541. Next Generation Sequencing Facilitates Quantitative Analysis of C57BL/6J mice. (Submitter supplied) Purpose: Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-seq) is a method for mapping chromatin accessibility genome-wide. The goals of this study are to investigate chromatin accessibility of C57BL/6J mice through ATAC-seq. Results: ATAC-seq reads were aligned to the UCSC mm10 reference genome with BWA-MEM. ATAC-seq peaks were called through MACS2 . Peaks were annotated and known transcription factor binding motifs were further analyzed in the ATAC-seq peaks by HOMER. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644722 Series Accession: GSE153993 ID: 200153993 1542. ATAC-seq from erythroid cells generated through ex vivo differentiation (Submitter supplied) CD34+ Haematopoietic stem cells were differentiated under two ex vivo protocols to generate ATAC-seq data for machine learning of rules underlying open chromatin dynamics. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 55 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564140 Series Accession: GSE136976 ID: 200136976 1543. Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other Platforms: GPL18573 GPL19057 34 Samples FTP download: GEO (BED, BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134798/ Series Accession: GSE134798 ID: 200134798 1544. Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (BLISS) (Submitter supplied) The depletion of HMGB1 reduces the deposition of histones on naked DNA (Celona et al, 2011). in primary MEFs and yeast. We verified that the downmodulation of HMGB1 decreases histone level also in a model of murine mesothelioma. HMGB1 was KD in Murine Mesothelioma AB22 cells by the expression of a shRNA. Nucleosome positioning and occupancy were tested by ATAC-seq. Since a reduced amount of nucleosomes increase the cell sensitivity to gamma irradiatio, we tested the number and position of breaks using BLISS-seq. Organism: Mus musculus Type: Non-coding RNA profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556433 Series Accession: GSE134797 ID: 200134797 1545. Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (ATAC-seq) (Submitter supplied) The depletion of HMGB1 reduces the deposition of histones on naked DNA (Celona et al, 2011). in primary MEFs and yeast. We verified that the downmodulation of HMGB1 decreases histone level also in a model of murine mesothelioma. HMGB1 was KD in Murine Mesothelioma AB22 cells by the expression of a shRNA. Nucleosome positioning and occupancy were tested by ATAC-seq. Since a reduced amount of nucleosomes increase the cell sensitivity to gamma irradiatio, we tested the number and position of breaks using BLISS-seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BED, BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556432 Series Accession: GSE134796 ID: 200134796 1546. Nucleosomes protect DNA from irradiation-induced double strand breaks in living cells (RNA-seq) (Submitter supplied) The depletion of HMGB1 reduces the deposition of histones on naked DNA (Celona et al, 2011). in primary MEFs and yeast. We verified that the downmodulation of HMGB1 decreases histone level also in a model of murine mesothelioma. HMGB1 was KD in Murine Mesothelioma AB22 cells by the expression of a shRNA. Nucleosome positioning and occupancy were tested by ATAC-seq. Since a reduced amount of nucleosomes increase the cell sensitivity to gamma irradiatio, we tested the number and position of breaks using BLISS-seq. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556431 Series Accession: GSE134795 ID: 200134795 1547. A genome-wide CRISPR screen reveals a role for the non-canonical nucleosome remodeling BAF complex in Foxp3 expression and regulatory T cell function (Submitter supplied) Regulatory T cells (Treg) play a pivotal role in suppressing auto-reactive T cells and maintaining immune homeostasis. Treg development and function are dependent on the transcription factor Foxp3. Here we performed a genome-wide CRISPR loss-of-function screen to identify Foxp3 regulators in mouse primary Treg cells. Foxp3 regulators were enriched in genes encoding subunits of the SWI/SNF nucleosome remodeling and SAGA chromatin modifying complexes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL19057 99 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532943 Series Accession: GSE129846 ID: 200129846 1548. Characterization of novel zinc finger protein ZNF414 DNA binding and gene regulatory activity by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 22 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153779/ Series Accession: GSE153779 ID: 200153779 1549. Characterization of novel zinc finger protein ZNF414 DNA binding and gene regulatory activity by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data (ChIP-exo) (Submitter supplied) Transcription factor binding to DNA is a central mechanism regulating cellular gene expression. Thus, thorough characterization of this process is essential for understanding cellular biology in both health and disease. In this study, we combined data from three sequencing-based methods to unravel the DNA binding function of the novel zinc finger protein ZNF414 in cells representing two tumor types. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644010 Series Accession: GSE153776 ID: 200153776 1550. Characterization of novel zinc finger protein ZNF414 DNA binding and gene regulatory activity by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data (RNA-seq) (Submitter supplied) Transcription factor binding to DNA is a central mechanism regulating cellular gene expression. Thus, thorough characterization of this process is essential for understanding cellular biology in both health and disease. In this study, we combined data from three sequencing-based methods to unravel the DNA binding function of the novel zinc finger protein ZNF414 in cells representing two tumor types. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 16 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644004 Series Accession: GSE153772 ID: 200153772 1551. Characterization of novel zinc finger protein ZNF414 DNA binding and gene regulatory activity by integrative analysis of ChIP-exo, ATAC-seq and RNA-seq data (ATAC-seq) (Submitter supplied) Transcription factor binding to DNA is a central mechanism regulating cellular gene expression. Thus, thorough characterization of this process is essential for understanding cellular biology in both health and disease. In this study, we combined data from three sequencing-based methods to unravel the DNA binding function of the novel zinc finger protein ZNF414 in cells representing two tumor types. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA644001 Series Accession: GSE153769 ID: 200153769 1552. Hematopoietic stem cells acquire survival advantage by loss of RUNX1 methylation identified in familial leukemia [ATAC-seq] (Submitter supplied) RUNX1 is among the most frequently mutated genes in human leukemia, and the loss or dominant-negative suppression of RUNX1 function is found in myelodysplastic syndrome and acute myeloid leukemia (AML). However, how post-translational modifications (PTMs) of RUNX1 affect its in vivo function and whether PTM dysregulation of RUNX1 can cause leukemia are largely unknown. We performed targeted deep sequencing on a family with 3 occurrences of AML and identified a novel RUNX1 mutation R237K. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623453 Series Accession: GSE148201 ID: 200148201 1553. Protein proximity analysis unravels a complex interplay between lymphoid transcription factors and ARID1a in T-cell development. (Submitter supplied) Maturation of lymphoid cells is controlled by the action of stage and lineage restricted transcription factors, which work with the general transcription and chromatin remodelling machinery to regulate gene expression. To better understand this functional interplay we used BioID to identify proximity interaction partners for GATA3, TCF7, SPI1, HLF, IKZF1, PAX5, ID1 and ID2. We found that ARID1a, a BAF complex component, interacts with a number of these transcription factors. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544337 Series Accession: GSE131673 ID: 200131673 1554. Oral Regeneration Is the Default Pathway Triggered by Injury in Hydra (Submitter supplied) Animals capable of whole-body regeneration can fully restore any tissue lost due to injury. Because different types of injury may require the regeneration of different structures, transcription during whole-body regeneration needs to dynamically adapt to meet the requirements specific to any given injury. However, the regulatory mechanisms responsible for modulating the transcriptional response to injury are poorly understood at the molecular level. more... Organism: Hydra vulgaris Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL28733 GPL25712 113 Samples FTP download: GEO (BED, BW, CSV, MATRIX, RDATA) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641135 Series Accession: GSE152994 ID: 200152994 1555. The environment-sensing aryl-hydrocarbon receptor inhibits the chondrogenic fate of modulated smooth muscle cells in atherosclerotic lesions (Submitter supplied) Aryl-hydrocarbon receptor protects against endochondral ossification of modulated smooth muscle cells in atherosclerosis Introduction: Smooth muscle cells (SMC) play a critical role in atherosclerosis. The Aryl hydrocarbon receptor (AHR) is an environment-sensing transcription factor that contributes to vascular development, and has been implicated in coronary artery disease (CAD) risk. We hypothesized that AHR can affect atherosclerosis by regulating phenotypic modulation of SMC. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL21103 GPL20301 34 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633538 Series Accession: GSE150768 ID: 200150768 1556. Therapeutic decoupling of MHC-I and PD-L1 expression increases the efficacy of immune checkpoint blockade (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platform: GPL17021 56 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149826/ Series Accession: GSE149826 ID: 200149826 1557. Therapeutic decoupling of MHC-I and PD-L1 expression increases the efficacy of immune checkpoint blockade (koTRAF3_ATACseq) (Submitter supplied) Immune checkpoint blockade (ICB) therapy has revolutionized the treatment of multiple cancers, but the majority of patients remain refractory due to impaired MHC-I expression. Although the combination of immunotherapy with existing anti-cancer treatments has shown synergy in multiple scenarios, the immunomodulatory effects of conventional therapies remain poorly understood. Here, we integrated CRISPR-mediated genetic screens and data mining of perturbation associated gene expression data to identify drugs that can specifically up-regulate MHC-I without inducing PD-L1. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630236 Series Accession: GSE149821 ID: 200149821 1558. Brg1 restrains the pro-inflammatory properties of ILC3s and modulates intestinal immunity [ATAC-seq] (Submitter supplied) To determine the molecular regulation of ILC3s by Brg1, small intestinal ILC3s (Lin-Thy1highCD45low) from Brg1-deficient and control ILC3s were subjected to assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 6 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623010 Series Accession: GSE148078 ID: 200148078 1559. Tracking epigenetic changes during human leukemogenesis (Submitter supplied) We have developed a human model leukemia system where healthy cord blood (CB) cells from single donors are used to generate dozens of human leukemias driven by KMT2A fusions. These models have been used for the study of the stepwise changes in donor CB cells as they undergo leukemic transformation driven by the KMT2A-MLLT3 (KM3) fusion gene. We specifically studied the epigenetic changes that occur in this specific AML subgroup through ChIP-seq of histone modifications and ATAC-seq and DNA methylation through Methyl-Seq. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 49 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597528 Series Accession: GSE142579 ID: 200142579 1560. Wapl repression by Pax5 promotes loop extrusion and V gene recombination at the Igh locus (Submitter supplied) The generation of a diverse antibody repertoire is essential for humoral immunity and requires the participation of all V genes in V(D)J recombination, which depends on the Pax5-regulated contraction of the 2.8-Mb long immunoglobulin heavy-chain (Igh) locus. How Pax5 controls Igh contraction in pro-B cells is, however, not known. Here, we demonstrate that locus contraction is caused by cohesin-mediated chromatin loop extrusion across the entire Igh locus. more... Organism: Mus musculus Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 170 Samples FTP download: GEO (BED, BEDGRAPH, BW, HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591597 Series Accession: GSE140975 ID: 200140975 1561. Inherited epigenetic repression of the Celf2a splicing factor mediates the amelioration of a Duchenne phenotype (Submitter supplied) Exon skipping is an effective strategy for the treatment of Duchenne Muscular Dystrophy (DMD). Natural exon skipping identified in several DMD cases can help with identifying novel therapeutic tools. Here, we demonstrate that CRISPR/Cas9 inactivation of the splicing factor Celf2a in a DMD-D44 background induces skipping of exon-45 and dystrophin rescue. Celf2a ablation could be compatible with life and curative since a DMD case with a milder symptomatology exists where exon-45 skipping occurs because of a Celf2a deficiency. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 12 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA580272 Series Accession: GSE139571 ID: 200139571 1562. Clonal tracing reveals the contribution of both cancer-intrinsic and -extrinsic mechanisms to the heterogeneity of responses to immune checkpoint blockade (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL13112 26 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139476/ Series Accession: GSE139476 ID: 200139476 1563. Clonal tracing reveals the contribution of both cancer-intrinsic and -extrinsic mechanisms to the heterogeneity of responses to immune checkpoint blockade [ATAC-seq] (Submitter supplied) Although multiple studies have investigated the biomarkers of response to immune checkpoint blockade (ICB), the significance of each biomarker varies across clinical cohorts independent of cancer type. It remains unclear whether primary ICB response and resistance is encoded in the cancer cells (cancer-intrinsic) or driven by the immune microenvironment unique to each host (cancer-extrinsic). To answer this question, we established a unique mouse system that utilizes clonal tracing and mathematical modeling to uncouple the cancer-intrinsic and -extrinsic mechanisms of ICB resistance. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA579937 Series Accession: GSE139473 ID: 200139473 1564. ATAC-seq analysis of immune responses from bone marrow derived dendritic cells stimulated with 7 pattern recognition receptor (PRR) ligands along with their pairwise and triplet combinations (Submitter supplied) The immune system makes decisions in response to combinations of multiple microbial inputs. We do not understand the combinatorial logic governing how higher-order combinations of microbial signals shape immune responses. Here, using coculture experiments and statistical analyses, we discover a general property for the combinatorial sensing of microbial signals, whereby the effects of triplet combinations of microbial signals on immune responses can be predicted by combining the effects of single and pairs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 36 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556659 Series Accession: GSE134867 ID: 200134867 1565. H2BG53D mutation in PDAC (Submitter supplied) Study was conducted to understand the effect of the cancer associated H2BG53D mutation in PDAC. Using CRISPR/Cas9 Knock-in cell lines expressing FLAG-tagged WT and G53D mutant H2B, we conducted gene expression profilling experiments and studied the effect of the H2BG53D mutation on transcription and PDAC development. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other Platforms: GPL18573 GPL20795 41 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556657 Series Accession: GSE134864 ID: 200134864 1566. β-catenin safeguards the ground state of pluripotency by strengthening the robustness of the transcriptional apparatus [ATAC-seq] (Submitter supplied) Mouse embryonic stem cells (ESCs) cultured with inhibitors of MEK and GSK3 (2iL) more closely resemble the pre-implantation embryo inner cell mass than cultures in serum/LIF (SL). Unveiling the differences between both systems is important for understanding development and could also assist in isolating an ESC equivalent for other mammalian species. In SL, pluripotency and cell cycle gene transcription is a multistep process requiring release of promoter-proximal paused RNA polymerase II (Pol2) by the histone acetylation reader BRD4 and the Pol2 kinase CDK9. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509605 Series Accession: GSE123690 ID: 200123690 1567. Integrative profiling of early host chromatin accessibility responses in human neutrophils with sensitive pathogen detection [RNA-seq] (Submitter supplied) ATAC-seq and RNA-seq of primary human neutrophils challenged with multiple pathogen mimicking ligands and whole organisms. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA642891 Series Accession: GSE153521 ID: 200153521 1568. Integrative profiling of early host chromatin accessibility responses in human neutrophils with sensitive pathogen detection [ATAC-seq] (Submitter supplied) ATAC-seq and RNA-seq of primary human neutrophils challenged with multiple pathogen mimicking ligands and whole organisms. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 76 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA636835 Series Accession: GSE153520 ID: 200153520 1569. Structural cells are key regulators of organ-specific immune response (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 579 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134663/ Series Accession: GSE134663 ID: 200134663 1570. Structural cells are key regulators of organ-specific immune response (Submitter supplied) The mammalian immune system implements a remarkably effective set of mechanisms for fighting pathogens. Its main actors are hematopoietic immune cells, including myeloid cells with their focus on innate immunity and lymphoid cells as enablers of adaptive immunity. Nevertheless, immune functions are not unique to hematopoietic cells, and basic mechanisms of pathogen defense are present in many other cell types. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 70 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556001 Series Accession: GSE134648 ID: 200134648 1571. CD103hi lung-resident regulatory T cells constrain the fibrotic responses induced by CD103low tissue-resident pathogenic CD4 T cells (Submitter supplied) Tissue-resident memory T (TRM) cells are crucial mediators of adaptive immunity in non-lymphoid tissues. However, the functional heterogeneity and pathogenic roles of CD4+ TRM cells that reside within chronic inflammatory lesions remain unknown. We found that CD69hiCD103low CD4+ TRM cells produced effector cytokines and promoted the inflammation and fibrotic responses induced by chronic exposure to Aspergillus fumigatus. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 28 Samples FTP download: GEO (BIGWIG, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551397 Series Accession: GSE133399 ID: 200133399 1572. Chromatin assembly factor HIRA is essential for the maintenance of hematopoiesis (Submitter supplied) HIRA is a histone chaperone that deposits the histone variant H3.3 in transcriptionally active genes. HIRA is essential for mouse development, as the standard knockout (KO) results in early embryonic death. However, the role of HIRA in hematopoiesis is poorly understood. We investigated the effect of Hira KO on hematopoiesis using Vav-Cre Loxp system. We show that Hira KO dramatically reduces bone marrow LSK cells, resulting in anemia, thrombopenia and severe, combined immunodeficiency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL13112 GPL19057 8 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA515415 Series Accession: GSE125154 ID: 200125154 1573. Human Bacille Calmette-Guérin vaccination elicits trained immunity via the hematopoietic progenitor compartment [ATAC-seq] (Submitter supplied) Induction of trained immunity by human Bacille-Calmette-Guérin (BCG) vaccination is implicated in the beneficial heterologous effects of the vaccine, but the underlying mechanisms remain elusive. We performed global transcriptome analysis of sorted progenitors from bone marrow before (D0) and 90 days after vaccination (D90). BCG vaccination induced transcriptomic myeloid priming of the hematopoietic stem and progenitor cell (HSPC) compartment marked by the upregulation of myeloid and granulocytic pathways alongside the induction of transcription factors connected to myeloid cell function, namely Hepatocyte Nuclear Factors (HNF). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18460 26 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511003 Series Accession: GSE124219 ID: 200124219 1574. Genome-wide maps of chromatin state of IRF5+/+ and IRF5-/- CD4+ mouse T cells (Submitter supplied) Genetic variants in IRF5 are associated with multiple immune-mediated diseases. IRF5 has been predominantly focused on for its regulation of myeloid-derived cells. We found that IRF5 contributes to CD4+ T cell outcomes and that it regulates early T cell receptor-initiated signaling and subsequently translocates to the nucleus where it binds to promoters of various genes regulated with T cell activation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 15 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625322 Series Accession: GSE148672 ID: 200148672 1575. Heme oxygenase-1 orchestrates the immunosuppressive program of tumor-associated macrophages (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 10 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148585/ Series Accession: GSE148585 ID: 200148585 1576. Heme oxygenase-1 orchestrates the immunosuppressive program of tumor-associated macrophages [RNA-Seq] (Submitter supplied) Tumor-Associated Macrophages (TAMs) contribute to the maintenance of a strong immunosuppressive environment, supporting tumor progression and resistance to treatment. To date, the mechanisms that drive acquisition of these immunosuppressive features are still poorly defined. Heme oxygenase-1 (HO-1) is the rate-limiting enzyme that catabolizes free heme. It displays important cytoprotective, anti-inflammatory and antioxidant properties. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL24247 6 Samples FTP download: GEO (CSV, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625080 Series Accession: GSE148583 ID: 200148583 1577. Heme oxygenase-1 orchestrates the immunosuppressive program of tumor-associated macrophages [ATAC-Seq] (Submitter supplied) Tumor-Associated Macrophages (TAMs) contribute to the maintenance of a strong immunosuppressive environment, supporting tumor progression and resistance to treatment. To date, the mechanisms that drive acquisition of these immunosuppressive features are still poorly defined. Heme oxygenase-1 (HO-1) is the rate-limiting enzyme that catabolizes free heme. It displays important cytoprotective, anti-inflammatory and antioxidant properties. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 4 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625081 Series Accession: GSE148582 ID: 200148582 1578. A comprehensive comparison of differential accessibility analysis methods for ATAC-seq data (Submitter supplied) Background: ATAC-seq is widely used to measure the chromatin accessibility and identify the open chromatin regions (OCRs). OCRs usually indicate the active regulatory elements in the genome and are directly associated with gene regulatory networks. Identification of differential accessibility regions (DARs) between different biological conditions is critical to measure the differential activity of regulatory elements. more... Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20084 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542717 Series Accession: GSE131144 ID: 200131144 1579. An activity-mediated transition in transcription in early postnatal neurons [ATAC-seq] (Submitter supplied) The maturation of the mammalian brain occurs after birth, and this stage of neuronal development is frequently impaired in neurological disorders, such as autism and schizophrenia. However, the mechanisms that regulate postnatal brain maturation are poorly defined. By purifying neuronal subpopulations across brain development in mice, we identify a postnatal switch in the transcriptional regulatory circuits that operates in the maturing mammalian brain. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 19 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632672 Series Accession: GSE150533 ID: 200150533 1580. TOP2B binding and enzymatic activity on promoters and introns modulates multiple oncogenes in human gliomas [ATAC-seq] (Submitter supplied) We investigated the contribution of TOP2B to transcriptional modulation in gliomas given the variable expression of this helicase across tumors, and its emerging role in epigenetic regulation of transcription. We mapped the genomic location of TOP2B, and identified distinct sites of native binding and enzymatic activity across human glioma cell lines and human tumor specimens. TOP2B was active in a subset of promoters and introns, and its inhibition led to downregulation of these genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL9052 5 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555430 Series Accession: GSE134455 ID: 200134455 1581. TOP2B binding and enzymatic activity on promoters and introns modulates multiple oncogenes in human gliomas (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL9052 75 Samples FTP download: GEO (BED, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133561/ Series Accession: GSE133561 ID: 200133561 1582. Low KLF11 Determines the CSC–like Identity in Sarcoma via restraining YAP transactivity [ATAC-seq] (Submitter supplied) We conducted Transposase-accessible chromatin using sequencing (ATAC-seq) experiments to compare chromatin open regions between control and KLF11-knockdown cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133311/ Series Accession: GSE133311 ID: 200133311 1583. Single-cell RNA-seq and ATAC-seq of zebrafish retina (Submitter supplied) To study the transcriptomic and chromatin accessibility heterogeneity of zebrafish retinal progenitor cells Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24995 2 Samples FTP download: GEO (TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633835 Series Accession: GSE150839 ID: 200150839 1584. Epigenetic changes in human DIPG cells with histone H3K27M mutations [ATAC-seq] (Submitter supplied) We assessed changes in chromatin accessibility in H3.3K27M DIPG cell lines on knockdown of metabolic enzymes including HK2, GDH and IDH1 Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA558794 Series Accession: GSE135418 ID: 200135418 1585. TOPORS, a tumor suppressor protein, maintains higher-order chromatin organization in mouse hepatocytes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL21273 GPL10448 32 Samples FTP download: GEO (BIGWIG, BW, HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134624/ Series Accession: GSE134624 ID: 200134624 1586. TOPORS, a tumor suppressor protein, maintains higher-order chromatin organization in mouse hepatocytes [ATAC-seq] (Submitter supplied) Within mammalian nuclear space, chromosomes are hierarchically folded into active (A) and inactive (B) compartments composed of topologically associating domains (TADs). Genomic regions interact with nuclear lamina, termed lamina-associated domains (LADs), associated with transcriptional repression. However, the molecular mechanisms underlying these 3D chromatin architectures remain undeciphered. Here, we demonstrate the role of a potential tumor suppressor, TOP1 Binding Arginine/Serine Rich Protein (TOPORS), in genome organization. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555878 Series Accession: GSE134619 ID: 200134619 1587. Symmetric neural progenitor divisions require chromatin-mediated homologous recombination DNA repair by Ino80 [ATAC-seq] (Submitter supplied) Chromatin regulates spatiotemporal gene expression during neurodevelopment, but it also mediates DNA damage repair crucial to proliferating neural progenitor cells (NPCs). Here, we uncover molecularly dissociable roles for nucleosome remodeler INO80 in chromatin-mediated transcriptome and genome maintenance in corticogenesis. We find that conditional Ino80 deletion from cortical NPCs impairs DNA double-strand break repair, triggering p53 activation, robust apoptosis, and microcephaly, whereas co-deletion of Trp53 with Ino80 leads to remarkable reversal of these phenotypes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE153nnn/GSE153061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641347 Series Accession: GSE153061 ID: 200153061 1588. Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble (Submitter supplied) Purpose: we utilized a mouse model that permanently labels neurons activated throughout a specific experience to decipher the interplay between chromatin accessibility, 3D-chromatin architecture and transcriptional changes across different memory phases. Non activated (basal) and activated neurons during memory encoding (early), consolidation (late) and recall (reactivated) were sorted and subjected to nuclear RNA sequencing (nRNA-seq) to determine gene expression, ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) to assess chromatin accessibility, chromosome conformation capture (Hi-C) to identify global 3D -genome architecture and promoter capture Hi-C to identify the long range promoter-enhancer interactions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641075 Series Accession: GSE152955 ID: 200152955 1589. Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble (Submitter supplied) Purpose: we utilized a mouse model that permanently labels neurons activated throughout a specific experience to decipher the interplay between chromatin accessibility, 3D-chromatin architecture and transcriptional changes across different memory phases. Non activated (basal) and activated neurons during memory encoding (early), consolidation (late) and recall (reactivated) were sorted and subjected to nuclear RNA sequencing (nRNA-seq) to determine gene expression, ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) to assess chromatin accessibility, chromosome conformation capture (Hi-C) to identify global 3D -genome architecture and promoter capture Hi-C to identify the long range promoter-enhancer interactions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 14 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641076 Series Accession: GSE152954 ID: 200152954 1590. Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble (Submitter supplied) Purpose: we utilized a mouse model that permanently labels neurons activated throughout a specific experience to decipher the interplay between chromatin accessibility, 3D-chromatin architecture and transcriptional changes across different memory phases. Non activated (basal) and activated neurons during memory encoding (early), consolidation (late) and recall (reactivated) were sorted and subjected to nuclear RNA sequencing (nRNA-seq) to determine gene expression, ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) to assess chromatin accessibility, chromosome conformation capture (Hi-C) to identify global 3D -genome architecture and promoter capture Hi-C to identify the long range promoter-enhancer interactions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 5 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA641074 Series Accession: GSE152953 ID: 200152953 1591. Mapping the epigenomic and transcriptomic interplay during memory formation and recall in the hippocampal engram ensemble (Submitter supplied) Purpose: we utilized a mouse model that permanently labels neurons activated throughout a specific experience to decipher the interplay between chromatin accessibility, 3D-chromatin architecture and transcriptional changes across different memory phases. Non activated (basal) and activated neurons during memory encoding (early), consolidation (late) and recall (reactivated) were sorted and subjected to nuclear RNA sequencing (nRNA-seq) to determine gene expression, ATAC-seq (Assay for Transposase-Accessible Chromatin using sequencing) to assess chromatin accessibility, chromosome conformation capture (Hi-C) to identify global 3D -genome architecture and promoter capture Hi-C to identify the long range promoter-enhancer interactions. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640383 Series Accession: GSE152775 ID: 200152775 1592. Genome-wide chromatin accessibility of wildtype zebrafish embryos at 5 dpf (120 hpf) (Submitter supplied) The goal of this study is to study the chromatin accessibility differences between control and uhrf1 hi272 mutant 5dpf zebrafish embryos using ATAC-Seq technique Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25922 5 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635399 Series Accession: GSE151293 ID: 200151293 1593. Early precursor T cells establish and propagate T cell exhaustion in chronic infection (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 36 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142687/ Series Accession: GSE142687 ID: 200142687 1594. Early precursor T cells establish and propagate T cell exhaustion in chronic infection [ATAC-seq] (Submitter supplied) TCF1+ precursors of exhausted T cells maintain T cell immunity during chronic infection and cancer and mediate the response to immune checkpoint inhibition; however, their developmental requirements are poorly understood. Here, we demonstrate that high antigen load promoted the differentiation of TCF1+ precursor T cells, which acquired hallmarks of T cell exhaustion such as impaired production of IFN? within the first days after infection. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597483 Series Accession: GSE142575 ID: 200142575 1595. Polycomb proteins, Ezh1 and Ezh2, co-regulate chromatin accessibility and nephron progenitor cell lifespan (Submitter supplied) Bulk ATAC_seq on GFP expressing FACS-isolated cells from E16.5 and P0 Six2TGC and compound Ezh1 and Ezh2 mutant kidneys( Six2TGC_Ezh2-/- , Ezh1+/-; Six2TGC_Ezh2-/-; and Ezh1-/- ; scRNA-seq analysis of NPCs (Six2/GFP+ cells) from E16.5 as well as P2 kidneys. Genotypes analyzed: Six2TGC (E16.5&P2), Six2TGCEzh2-/- (E16.5), Ezh1+/-;Six2TGCEzh2-/- (E16.5), and Ezh2-/-;Six2TGCEzh2-/- (E16.5) Six2/GFP+ nephron progenitor cells (NPCs) give rise to all epithelial cell types of the nephron, the filtering unit of the kidney.  NPCs have a limited lifespan and are consumed near the time of birth.   Pre-term birth or prenatal stress further shorten the lifespan of NPCs and result in nephron deficit and chronic kidney disease.  Accordingly, there is a pressing need to better understand the factors that regulate NPC lifespan in order to develop novel regenerative strategies.  Epigenetic factors are implicated in maintenance of organ-restricted progenitors such as NPCs, but the chromatin-based mechanisms are not well understood. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL21626 30 Samples FTP download: GEO (BW, H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603537 Series Accession: GSE144384 ID: 200144384 1596. CTCF-dependent chromatin architecture and SUZ12/PRC2 complex recruitment are required for peripheral myelination and repair (Submitter supplied) Chromatin organization is critical for cell growth, differentiation, and disease development, however, its functions in peripheral myelination and myelin repair remain elusive. Here we observed a global diminution of chromatin accessibility during Schwann cell differentiation and demonstrated that the chromatin organizer CCCTC-binding factor (CTCF) is critical for Schwann cell myelination and myelin regeneration after nerve injury. more... Organism: Mus musculus; Rattus norvegicus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL18694 18 Samples FTP download: GEO (TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA574954 Series Accession: GSE138117 ID: 200138117 1597. Gene regulation gravitates towards either addition or multiplication when combining the effects of two signals (Submitter supplied) Signals often ultimately affect the transcription of genes, and often, two different signals can affect the transcription of the same gene. In such cases, it is natural to ask how the combined transcriptional response compares to the individual responses. Mechanistic models can predict a range of combined responses, with the most commonly applied models predicting additive or multiplicative responses, but systematic genome-wide evaluation of these predictions are not available. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18573 77 Samples FTP download: GEO (BIGWIG, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152749/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA640339 Series Accession: GSE152749 ID: 200152749 1598. Essential and Opposite Roles of ARID1A in Coordinating Human Cardiogenesis and Neurogenesis from Pluripotent Stem Cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL24676 8 Samples FTP download: GEO (BW, NARROWPEAK, TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139343/ Series Accession: GSE139343 ID: 200139343 1599. Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-seq) revealed genomic chromatin accessibilities change induced by loss of ARID1A in differentiated (day 4) H9 hESCs (Submitter supplied) We reported loss of ARID1A promoted neurogenesis and inhibited cardiogenesis. Under microscopy, we observed that spontaneously differentiated cells were induced in ARID1A KO H9 hESCs cultured in mTesR medium. We did not know what cells types were. Here ATAC-seq were used to investigate chromatin accessibilities change in differentiated (day 4) WT H9 hESCs and ARID1A KO hESC cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA579321 Series Accession: GSE139329 ID: 200139329 1600. Altered 3D chromatin structure permits inversional recombination at the IgH locus (Submitter supplied) We report that in the absence of intergenic control region 1 (IGCR1), a regulatory sequence that specifies the RAG scanning domain on WT IgH alleles, VH and DH gene segments can recombine with each other by both deletion and inversion of intervening DNA. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA550257 Series Accession: GSE133185 ID: 200133185 1601. Evolution of vertebrate gill covers through shifts in an ancient gnathostome Pou3f3 enhancer (Submitter supplied) Whereas the gill chambers of extant jawless vertebrates (lampreys and hagfish) open directly into the environment, jawed vertebrates have evolved skeletal appendages that promote the unidirectional flow of oxygenated water over the gills. A major anatomical difference between the two jawed vertebrate lineages is the presence of a single operculum covering a large common gill cavity in bony fishes versus separate covers for each gill chamber in cartilaginous fishes. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25922 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590283 Series Accession: GSE140636 ID: 200140636 1602. CHANGE-seq reveals the genome-wide activity of CRISPR-Cas9 (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL20301 GPL24676 20 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149363/ Series Accession: GSE149363 ID: 200149363 1603. Dynamic Transcriptional and Chromatin Accessibility Landscape of Medaka Embryogenesis (Submitter supplied) Chromatin accessibility of nine embryonic samples was profiled using transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) to identify potential regulatory elements. Organism: Oryzias latipes Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25587 18 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA560968 Series Accession: GSE136027 ID: 200136027 1604. Charting the prostate epigenomic landscape from transformation to progression (Submitter supplied) We generate transcription factor, histone modification and ATAC cistromes in nomal prostate epithelium, primary prostate tumor and metastatic prostate cancer human specimens Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 249 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540151 Series Accession: GSE130408 ID: 200130408 1605. BMP4 Resets Primed to Naive Pluripotency by Reprogramming Chromatin Accessibility (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21273 GPL19057 17 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122937/ Series Accession: GSE122937 ID: 200122937 1606. BMP4 Resets Primed to Naive Pluripotency by Reprogramming Chromatin Accessibility [RNA-Seq] (Submitter supplied) Mouse naive and primed pluripotent stem cells, ESC and EpiSC, represent two distinct stages of pluripotency. Here we report that BMP4 drives primed to naive transition or PNT by reprogramming chromatin accessibility. ATAC-seq reveals that a short pulse of BMP4 triggers EpiSCs to close 26409 and open 6428 loci to reach an intermediate state that continue to open 18744 and close 7042 loci under 2iL until reaching a naive state, following with a dramatic reactivation of the silenced X chromosome. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506967 Series Accession: GSE122936 ID: 200122936 1607. BMP4 Resets Primed to Naive Pluripotency by Reprogramming Chromatin Accessibility [ATAC-Seq] (Submitter supplied) Mouse naive and primed pluripotent stem cells, ESC and EpiSC, represent two distinct stages of pluripotency. Here we report that BMP4 drives primed to naive transition or PNT by reprogramming chromatin accessibility. ATAC-seq reveals that a short pulse of BMP4 triggers EpiSCs to close 26409 and open 6428 loci to reach an intermediate state that continue to open 18744 and close 7042 loci under 2iL until reaching a naive state, following with a dramatic reactivation of the silenced X chromosome. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506968 Series Accession: GSE122935 ID: 200122935 1608. A unique viral reservoir landscape associated with durable natural control of HIV-1 infection [ATAC-seq] (Submitter supplied) Sustained, drug-free control of HIV-1 replication is naturally achieved in less than 0.5% of infected persons (“elite controllers”, ECs), despite the presence of a replication-competent viral reservoir. Such an ability to spontaneously maintain undetectable plasma viremia is a major objective of functional cure efforts, yet the characteristics of proviral reservoirs in ECs remain to be determined. Using single-genome, near full-length next-generation sequencing and chromosomal integration site analysis, we here show that proviral reservoirs of ECs frequently consist of oligoclonal to near monoclonal clusters of identical intact proviral sequences. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 96 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603385 Series Accession: GSE144329 ID: 200144329 1609. ATAC-seq on mouse embryonic stem cells for asynchronous cells, mitotic cells and purified mitotic chromosomes. (Submitter supplied) E14Tg2a mouse embryonic stem cells (ESCs) were cultured on gelatin coated plates in KO-DMEM medium supplemented with 15% FCS and 1000 U/ml leukaemia inhibitory factor. Rapidly dividing cultures of ESCs were arrested in metaphase using demecolcine (0.1 μg/ml for 6 h), achieving samples where most (85-90%) cells were in M-phase as judged by propidium iodide labelling. Condensed chromosomes were released using polyamine buffer, stained with Hoechst 33258 and Chromomycin A3 and purified by flow cytometry using a Becton Dickinson Influx equipped with specialised air-cooled lasers. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 3 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA615279 Series Accession: GSE147552 ID: 200147552 1610. Sustained activation of AMPK enhances differentiation of human iPSC-derived cardiomyocytes via sirtuin activation (Submitter supplied) Lee and colleagues demonstrate that sustained activation of AMPK enhances differentiation of iPSC-derived cardiomyocytes. Sustained AMPK activation decreased histone acetylation at known target sites for nuclear-localized sirtuins, suggesting that AMPK activation enhances sirtuin activity. AMPK-induced sirtuin-mediated deacetylation of histone proteins may regulate chromatin accessibility and enhance cardiomyocyte differentiation. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638838 Series Accession: GSE152265 ID: 200152265 1611. Inhibition of BET proteins rescues neural defects in Rett syndrome [ATAC-seq] (Submitter supplied) Rett syndrome (RTT) is a severe X-linked neurodevelopmental disorder caused by mutations in the methyl-CpG binding protein 2 (MeCP2). Cellular heterogeneity in the brain confounds the understanding of RTT etiology. To date, how MeCP2 mutation affects defined cell types in human brain remains unclear, and effective therapeutics for RTT is lacking. Here we show that cell-type-specific transcriptome impairment and JQ1-mediated rescue in RTT cells from dorsal and ventral human forebrain organoids. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA482370 Series Accession: GSE117507 ID: 200117507 1612. Differences in directionality of RNA polymerase initiation underlie epigenome differences between plants and animals (Submitter supplied) Transcriptional regulation is a universal mechanism for a wide array of biological processes, and is driven in large part by genetic enhancer elements. These regulatory elements have been well-studied in animal species, yet their plant counterparts remain poorly characterized. While high-throughput profiling of animal genomes has yielded great success in identifying genetic enhancers through secondary characteristics – flanking histone posttranslational modifications (PTMs), chromatin accessibility, and the production of enhancer RNAs (eRNAs) – it is an active line of investigation as to whether these secondary characteristics can be used in a similar way to locate regulatory regions of plant genomes. more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13222 8 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638678 Series Accession: GSE152243 ID: 200152243 1613. Chromatin accessibility changes during astrocyte maturation in vivo and in culture (Submitter supplied) Analysis of changes in chromatin accessibility during astrocyte differentiation and maturation in vivo and in vitro in mouse, and investigation of transcription factors and extrinsic conditions influencing maturation Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 53 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE152nnn/GSE152219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA638660 Series Accession: GSE152219 ID: 200152219 1614. Chromatin landscape changes of regenerating wing imaginal discs (Submitter supplied) We report the changes in chromatin accessibility associated with regeneration in wing imaginal discs at two developmental timepoints during L3. Wing discs were ablated using tissue-specific expression of the pro-apoptotic gene eiger at an early timepoint (day 7) when the discs retain high regenerative capacity and at a late time point (day 9) when regenerative capacity has significantly declined. ATAC-seq was performed on these discs after 40 hr of ablation and compared to identically staged unablated discs. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21306 GPL9061 13 Samples FTP download: GEO (BED, BW, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590797 Series Accession: GSE140755 ID: 200140755 1615. Myocardial Infarction accelerates breast cancer via innate immune reprogramming (ATAC-seq) (Submitter supplied) Disruptions of systemic homeostasis have emerged as critical regulators of cancer. Recent studies indicate that chronic or acute host stressors (e.g., obesity1, surgery2) alter cancer pathogenesis. Many cancer patients, particularly those with breast cancer, are at increased risk for cardiovascular disease due to treatment toxicity and resulting changes in lifestyle behaviors3-5. While elevated risk and incidence of cardiovascular events in breast cancer is well-established, whether such events impact cancer pathogenesis is not known. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA573073 Series Accession: GSE137789 ID: 200137789 1616. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility [40-K562 RNA-seq] (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as ASTAR (Assay for Single-cell Transcriptome and Accessibility Regions). Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 40 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637068 Series Accession: GSE151735 ID: 200151735 1617. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility [40-K562_ATAC] (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as ASTAR (Assay for Single-cell Transcriptome and Accessibility Regions). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 40 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637067 Series Accession: GSE151734 ID: 200151734 1618. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Mouse single cell ATAC-Seq mESCs) (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as ASTAR (Assay for Single-cell Transcriptome and Accessibility Regions). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 192 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623631 Series Accession: GSE148270 ID: 200148270 1619. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Mouse single cell RNA-Seq mESCs) (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as ASTAR (Assay for Single-cell Transcriptome and Accessibility Regions). Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 192 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623632 Series Accession: GSE148268 ID: 200148268 1620. AP-1 Regulates Chromatin Accessibility to Promote Sarcomere Disassembly and Cardiomyocyte Protrusion during Zebrafish Heart Regeneration (Submitter supplied) The zebrafish has emerged as a powerful model to study cardiac regeneration; however, the mechanisms by which cardiomyocytes respond to damage by disassembling sarcomeres, proliferating, and repopulating the injured area remain unclear. Here, we show that AP-1 transcription factors play an essential role in regulating the cardiomyocyte response. Using ATAC-Seq, we first find that the cardiomyocyte chromatin accessibility landscape is dynamic following cryoinjury, and that AP-1 motifs are the most highly enriched in regions that gain accessibility during regeneration. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 14 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542058 Series Accession: GSE130940 ID: 200130940 1621. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Human single cell RNA-seq blood) (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as ASTAR (Assay fro Single-cell Transcriptome and Accessibility Regions). Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 480 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510138 Series Accession: GSE123899 ID: 200123899 1622. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Human single cell ATAC-seq blood) (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as ASTAR (Assay fro Single-cell Transcriptome and Accessibility Regions). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 480 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510135 Series Accession: GSE123895 ID: 200123895 1623. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Mouse single cell RNA-seq) (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as STAR (Single-cell Transcriptome and Accessibility Regions). Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 192 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451116 Series Accession: GSE113417 ID: 200113417 1624. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Mouse single cell ATAC-seq) (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as STAR (Single-cell Transcriptome and Accessibility Regions). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 192 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451119 Series Accession: GSE113416 ID: 200113416 1625. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Human single cell RNA-seq) (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as STAR (Single-cell Transcriptome and Accessibility Regions). Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 384 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451117 Series Accession: GSE113415 ID: 200113415 1626. Parallel Bimodal Single-cell Sequencing of Transcriptome and Chromatin Accessibility (Human single cell ATAC-seq) (Submitter supplied) We report a new technology for the parallel bimodal analysis of RNA-seq and ATAC-seq within a single-cell, known as STAR (Single-cell Transcriptome and Accessibility Regions). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 384 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451118 Series Accession: GSE113414 ID: 200113414 1627. Luminal Stem Cell Determinant SOX9 Controls Lineage Plasticity and Progression in Basal-Like Breast Cancer (ATAC-seq) (Submitter supplied) Lineage plasticity plays an important role in the development of basal-like breast cancer (BLBC), an aggressive cancer subtype. Although studies suggest BLBC is likely to originate from luminal progenitor cells, it acquires substantial basal cell features and contains a heterogenous collection of cells exhibiting basal, luminal and bipotent phenotypes. Why luminal progenitors are prone to BLBC transformation and what drives luminal-to-basal/bipotent reprogramming remains unclear. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA576616 Series Accession: GSE138631 ID: 200138631 1628. Characterization of Alveolar macrophage subsets infected by Cryptococcus neoformans [ATAC-seq] (Submitter supplied) We examined two subpopulations of alveolar macrophages differentiated by CXCL2 expression stimulated by Cryptococcus neoformans. The two subpopulations have distinct mRNA expression pattern indicating the heterogenity within alveolar macrophages. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BW, RTF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA609745 Series Accession: GSE146234 ID: 200146234 1629. Transcriptomic signatures and chromatin structure in adipocytes isolated from premenauposal women subcutaneous fat (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 60 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143450/ Series Accession: GSE143450 ID: 200143450 1630. Transcriptomic signatures and chromatin structure in adipocytes isolated from premenauposal women subcutaneous fat [ATAC-seq] (Submitter supplied) Our data showed that lipid and glucose metabolic pathways genes were expressed at higher levels in gluteofemoral adipocyte fraction in pears, while genes associated with inflammation were higher in both abdominal and gluteofemoral apple adipocyte fraction. Gluteofemoral adipocyte chromatin from pear-shaped women contained a significantly higher number of differentially open ATAC-seq peaks relative to chromatin from the apple-shaped gluteofemoral adipocytes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 40 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143449/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600519 Series Accession: GSE143449 ID: 200143449 1631. Transcriptomic signatures and chromatin structure in adipocytes isolated from premenauposal women subcutaneous fat [RNA-seq] (Submitter supplied) Our data showed that lipid and glucose metabolic pathways genes were expressed at higher levels in gluteofemoral adipocyte fraction in pears, while genes associated with inflammation were higher in both abdominal and gluteofemoral apple adipocyte fraction. Gluteofemoral adipocyte chromatin from pear-shaped women contained a significantly higher number of differentially open ATAC-seq peaks relative to chromatin from the apple-shaped gluteofemoral adipocytes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600518 Series Accession: GSE143448 ID: 200143448 1632. Estrogen induces dynamic ERa and RING1B recruitment to control gene and enhancer activities in luminal breast cancer (Submitter supplied) We have previously shown that RING1B, a core Polycomb Repressive Complex 1 subunit, is amplified in 22% of breast cancer patients. In ER+ breast cancer, RING1B functionally interacts and co-localizes with ERa at enhancers and actively transcibed genes to modulate oncogenic transcriptional programs. However, the molecular mechanisms underlying this interaction is unclear. Here we demonstrate that in ER+ breast cancer cells, prolonged estrogen (E2) administration induces fluctuations in transcriptional output and chromatin landscape. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 103 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565967 Series Accession: GSE137579 ID: 200137579 1633. Chromatin Accessibility and Transcription Dynamics During In Vitro Astrocyte Differentiation of Huntington’s Disease Monkey Pluripotent Stem Cells. (Submitter supplied) Huntington’s Disease (HD) is a fatal, neurodegenerative disorder caused by a CAG repeat expansion, resulting in a mutant huntingtin protein. While it is now clear that astrocytes are affected by HD and significantly contribute to neuronal dysfunction and pathogenesis, the alterations in the transcriptional and epigenetic profiles in HD astrocytes have yet to be characterized. Here, we examined global transcription and chromatin accessibility dynamics during in vitro astrocyte differentiation in a transgenic non-human primate model of HD. more... Organism: Macaca mulatta Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19129 GPL23804 40 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540664 Series Accession: GSE130570 ID: 200130570 1634. Gene expression analysis of mouse alveolar macrophages and whole-blood from mice with contained Mycobacterium tuberculosis infection (Submitter supplied) The aim of this study was to measure the impact of contained infection with Mycobacterium tuberculosis (CMTB) on the immune response of alveolar macrophages (AMs) to intracellular Mtb infection in vivo and on the circulatory cellularity. We characterized the transcriptional profile of murine AMs in CMTB and control mice by sorting cells from whole-lung lysates and performing RNA-sequencing (samples 1-6). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 28 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126355/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521696 Series Accession: GSE126355 ID: 200126355 1635. Inactivation of ARID1A-SWI/SNF Complex Alters Chromatin Compactness at Enhancer Regions and Affects Transcription of Key Tumor Signaling Circuitry (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL18573 GPL16791 116 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106665/ Series Accession: GSE106665 ID: 200106665 1636. Inactivation of ARID1A-SWI/SNF Complex Alters Chromatin Compactness at Enhancer Regions and Affects Transcription of Key Tumor Signaling Circuitry [ChIP-Seq] (Submitter supplied) For ATAC-seq data processing, we used the ENCODE ATAC-seq pipeline (https://www.encodeproject.org/atac-seq/). In detail, for each sample, ATAC-seq reads were first checked for adaptor contamination. Then, adaptor trimmed reads were aligned to hg19 using Bowtie2 under paired-end mode with parameter “-X2000”, which permits 2000 bp for the maximum allowable insert size between two paired ends of each read. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 78 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417569 Series Accession: GSE106660 ID: 200106660 1637. Inactivation of ARID1A-SWI/SNF Complex Alters Chromatin Compactness at Enhancer Regions and Affects Transcription of Key Tumor Signaling Circuitry [ATAC-Seq] (Submitter supplied) Somatic mutations in ARID1A, a SWI/SNF chromatin remodeling gene, are prevalent in human malignancies linked to endometriosis. Through comprehensive chromatin immunoprecipitation sequencing and transposase-accessible chromatin sequencing, we identified chromatin binding regions for ARID1A/BRG1-containing SWI/SNF remodeling complexes, which were enriched at enhancers and corresponded to a euchromatin state. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417567 Series Accession: GSE106658 ID: 200106658 1638. E proteins orchestrate dynamic transcriptional cascades implicated in the suppression of the differentiation of group 2 innate lymphoid cells [ATAC-Seq] (Submitter supplied) Group 2 innate lymphoid cells (ILC2s) represent a subset of newly discovered immune cells that are involved in immune reactions against microbial pathogens, host allergic reactions as well as tissue repair. The basic helix-loop-helix transcription factors collectively called E proteins powerfully suppress the differentiation of ILC2s from bone marrow and thymic progenitors while promoting the development of B and T lymphocytes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637071 Series Accession: GSE151737 ID: 200151737 1639. Glucocorticoid Regulates Mesenchymal Cell Differentiation Required for Perinatal Lung Morphogenesis and Function (Submitter supplied) We integrated genome-wide gene expression profiling, ATAC-seq, and single cell RNA-seq data in mice in which GR was deleted or activated to identify the cellular and molecular mechanisms by which glucocorticoids control prenatal lung maturation. GR activated differentiation of a newly defined proliferative mesenchymal progenitor cell (PMP) into matrix fibroblasts (MFB), in part by directly activating extracellular matrix-associated target genes, including Fn1, Col16a4, and Eln and modulating FGF, VEGF, JAK-STAT and WNT signaling. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 41 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564113 Series Accession: GSE136954 ID: 200136954 1640. A lamin-like protein OsNMCP1 regulates drought resistance and root growth partially through chromatin accessibility modulation by interacting with a chromatin remodeler OsSWI3C in rice (Submitter supplied) Lamin proteins in animals are implicated in many nuclear functions, including chromatin organization, signaling transduction, gene regulation, and cell differentiation. Nuclear Matrix Constituent Proteins (NMCPs) are lamin analogues in plants, but their regulatory functions remain largely unknown. In this work, we report that OsNMCP1 positively regulates root growth and drought resistance through modulating chromatin state and expression levels of many genes functioning in root growth and stress resistance. more... Organism: Oryza sativa Japonica Group Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23876 29 Samples FTP download: GEO (BW, TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562309 Series Accession: GSE136373 ID: 200136373 1641. Intergenerationally maintained Histone H4 lysine 16 acetylation is instructive for future gene activation (Submitter supplied) Before zygotic genome activation (ZGA) the quiescent genome undergoes reprogramming to transition into the transcriptionally active state. However, the mechanisms underlying euchromatin establishment during early embryogenesis remain poorly understood. Here, we show that histone H4 lysine-16 acetylation (H4K16ac) is maintained from oocytes to fertilized embryos in Drosophila and mammals. H4K16ac forms large domains that control nucleosome accessibility of promoters prior to ZGA in flies. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19132 GPL23323 124 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130335/ Series Accession: GSE130335 ID: 200130335 1642. H4K16ac developmental dynamics during Drosophila development [DNA] (Submitter supplied) H4K16ac developmental dynamics during drosophila development Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19132 GPL23323 70 Samples FTP download: GEO (BED, BEDGRAPH, BW, H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130334/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA535514 Series Accession: GSE130334 ID: 200130334 1643. Evidence for additive and synergistic action of mammalian enhancers during cell fate determination [ATAC-seq, CEBPA-ChIP-seq] (Submitter supplied) Enhancer activity is known to drive cell differentiation and cell type determination, but it remains unclear how enhancers cooperate during these processes. Here we investigate enhancer cooperation during transdifferentiation of human B-cells to macrophages using enhancer RNA synthesis from accessible, H3K4-monomethylated chromatin regions as a proxy for enhancer activity. Most enhancers cooperate in an additive way to induce transcription of target genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 28 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA637072 Series Accession: GSE149885 ID: 200149885 1644. Identification of RUNX1 targets in iLSCs (Submitter supplied) We identified 2 phenotypically and functionally distinct populations in our AML-iPSC line upon hematopoietic differentiation. One population is phenotypically and functionally a leukemia stem cell population (iLSCs = Samples A) and the second is more differentiated (iBlasts = Samples S). We found RUNX1 to be critical for iLSC maintenance and used gene expression and chromatin accessibility analyses after RUNX1 KD in iLSCs and iBlasts to identify the molecular mechanism of RUNX1 in iLSCs. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 24 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600546 Series Accession: GSE143471 ID: 200143471 1645. Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II and Pol III [Hi-C] (Submitter supplied) Genome binding/occupancy profiling by high throughput sequencing ｜ Expression profiling by high throughput sequencing | Other We analyzed Hi-C, HiChIP, Ocean-C, RNA-seq, ATAC-seq, ChIP-seq and 4C-seq data to provide the most comprehensive evidence to date to demonstrate that transcription plays a marginal role in organizing the 3D genome in mammalian cells: 1) degraded Pol I, Pol II and Pol III proteins in mESCs, and showed their loss results in little or no changes of global 3D chromatin structures for the first time; 2) selected RNA polymerases high abundance binding sites-associated interactions and found they still persist after the degradation; 3) generated higher resolution chromatin interaction maps and revealed that transcription inhibition mildly alters small loop domains; 4) identified Pol II bound but CTCF and Cohesin unbound loops and disclosed that they are largely resistant to transcription inhibition Interestingly, we found that Pol II depletion for a longer time significantly affects the chromatin accessibility and Cohesin occupancy, suggesting RNA polymerases are capable of affecting the 3D genome indirectly. more... Organism: Mus musculus Type: Other Platform: GPL21273 22 Samples FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607400 Series Accession: GSE145873 ID: 200145873 1646. Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II and Pol III [Ocean-C ] (Submitter supplied) Genome binding/occupancy profiling by high throughput sequencing ｜ Expression profiling by high throughput sequencing | Other We analyzed Hi-C, HiChIP, Ocean-C, RNA-seq, ATAC-seq, ChIP-seq and 4C-seq data to provide the most comprehensive evidence to date to demonstrate that transcription plays a marginal role in organizing the 3D genome in mammalian cells: 1) degraded Pol I, Pol II and Pol III proteins in mESCs, and showed their loss results in little or no changes of global 3D chromatin structures for the first time; 2) selected RNA polymerases high abundance binding sites-associated interactions and found they still persist after the degradation; 3) generated higher resolution chromatin interaction maps and revealed that transcription inhibition mildly alters small loop domains; 4) identified Pol II bound but CTCF and Cohesin unbound loops and disclosed that they are largely resistant to transcription inhibition Interestingly, we found that Pol II depletion for a longer time significantly affects the chromatin accessibility and Cohesin occupancy, suggesting RNA polymerases are capable of affecting the 3D genome indirectly. more... Organism: Mus musculus Type: Other Platform: GPL21273 4 Samples FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607400 Series Accession: GSE145794 ID: 200145794 1647. Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II and Pol III [HiChIP] (Submitter supplied) Genome binding/occupancy profiling by high throughput sequencing ｜ Expression profiling by high throughput sequencing | Other We analyzed Hi-C, HiChIP, Ocean-C, RNA-seq, ATAC-seq, ChIP-seq and 4C-seq data to provide the most comprehensive evidence to date to demonstrate that transcription plays a marginal role in organizing the 3D genome in mammalian cells: 1) degraded Pol I, Pol II and Pol III proteins in mESCs, and showed their loss results in little or no changes of global 3D chromatin structures for the first time; 2) selected RNA polymerases high abundance binding sites-associated interactions and found they still persist after the degradation; 3) generated higher resolution chromatin interaction maps and revealed that transcription inhibition mildly alters small loop domains; 4) identified Pol II bound but CTCF and Cohesin unbound loops and disclosed that they are largely resistant to transcription inhibition Interestingly, we found that Pol II depletion for a longer time significantly affects the chromatin accessibility and Cohesin occupancy, suggesting RNA polymerases are capable of affecting the 3D genome indirectly. more... Organism: Mus musculus Type: Other Platform: GPL21273 4 Samples FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607400 Series Accession: GSE145793 ID: 200145793 1648. Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II and Pol III [RNA-seq] (Submitter supplied) Genome binding/occupancy profiling by high throughput sequencing ｜ Expression profiling by high throughput sequencing | Other We analyzed Hi-C, HiChIP, Ocean-C, RNA-seq, ATAC-seq, ChIP-seq and 4C-seq data to provide the most comprehensive evidence to date to demonstrate that transcription plays a marginal role in organizing the 3D genome in mammalian cells: 1) degraded Pol I, Pol II and Pol III proteins in mESCs, and showed their loss results in little or no changes of global 3D chromatin structures for the first time; 2) selected RNA polymerases high abundance binding sites-associated interactions and found they still persist after the degradation; 3) generated higher resolution chromatin interaction maps and revealed that transcription inhibition mildly alters small loop domains; 4) identified Pol II bound but CTCF and Cohesin unbound loops and disclosed that they are largely resistant to transcription inhibition Interestingly, we found that Pol II depletion for a longer time significantly affects the chromatin accessibility and Cohesin occupancy, suggesting RNA polymerases are capable of affecting the 3D genome indirectly. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21273 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607400 Series Accession: GSE145792 ID: 200145792 1649. Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II and Pol III [ChIP-seq] (Submitter supplied) Genome binding/occupancy profiling by high throughput sequencing ｜ Expression profiling by high throughput sequencing | Other We analyzed Hi-C, HiChIP, Ocean-C, RNA-seq, ATAC-seq, ChIP-seq and 4C-seq data to provide the most comprehensive evidence to date to demonstrate that transcription plays a marginal role in organizing the 3D genome in mammalian cells: 1) degraded Pol I, Pol II and Pol III proteins in mESCs, and showed their loss results in little or no changes of global 3D chromatin structures for the first time; 2) selected RNA polymerases high abundance binding sites-associated interactions and found they still persist after the degradation; 3) generated higher resolution chromatin interaction maps and revealed that transcription inhibition mildly alters small loop domains; 4) identified Pol II bound but CTCF and Cohesin unbound loops and disclosed that they are largely resistant to transcription inhibition Interestingly, we found that Pol II depletion for a longer time significantly affects the chromatin accessibility and Cohesin occupancy, suggesting RNA polymerases are capable of affecting the 3D genome indirectly. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 29 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607400 Series Accession: GSE145791 ID: 200145791 1650. Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II and Pol III [ATAC-seq] (Submitter supplied) Genome binding/occupancy profiling by high throughput sequencing ｜ Expression profiling by high throughput sequencing | Other We analyzed Hi-C, HiChIP, Ocean-C, RNA-seq, ATAC-seq, ChIP-seq and 4C-seq data to provide the most comprehensive evidence to date to demonstrate that transcription plays a marginal role in organizing the 3D genome in mammalian cells: 1) degraded Pol I, Pol II and Pol III proteins in mESCs, and showed their loss results in little or no changes of global 3D chromatin structures for the first time; 2) selected RNA polymerases high abundance binding sites-associated interactions and found they still persist after the degradation; 3) generated higher resolution chromatin interaction maps and revealed that transcription inhibition mildly alters small loop domains; 4) identified Pol II bound but CTCF and Cohesin unbound loops and disclosed that they are largely resistant to transcription inhibition Interestingly, we found that Pol II depletion for a longer time significantly affects the chromatin accessibility and Cohesin occupancy, suggesting RNA polymerases are capable of affecting the 3D genome indirectly. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607400 Series Accession: GSE145785 ID: 200145785 1651. Genome-wide analyses of chromatin interactions after the loss of Pol I, Pol II and Pol III [4C-seq] (Submitter supplied) We analyzed Hi-C, HiChIP, Ocean-C, RNA-seq, ATAC-seq, ChIP-seq and 4C-seq data to provide the most comprehensive evidence to date to demonstrate that transcription plays a marginal role in organizing the 3D genome in mammalian cells: 1) degraded Pol I, Pol II and Pol III proteins in mESCs, and showed their loss results in little or no changes of global 3D chromatin structures for the first time; 2) selected RNA polymerases high abundance binding sites-associated interactions and found they still persist after the degradation; 3) generated higher resolution chromatin interaction maps and revealed that transcription inhibition mildly alters small loop domains; 4) identified Pol II bound but CTCF and Cohesin unbound loops and disclosed that they are largely resistant to transcription inhibition Interestingly, we found that Pol II depletion for a longer time significantly affects the chromatin accessibility and Cohesin occupancy, suggesting RNA polymerases are capable of affecting the 3D genome indirectly. more... Organism: Mus musculus Type: Other Platform: GPL21273 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607400 Series Accession: GSE145784 ID: 200145784 1652. Molecular Quantitative Trait Locus Mapping In Human Endothelial Cells Identifies Regulatory SNPs Underlying Gene Expression and Complex Disease Traits (Submitter supplied) Identification of causal variants and mechanisms underlying complex disease traits in humans requires strategies to locate and fine-map functional regulatory variants in disease-relevant cell types. To discover functional regulatory variants in primary aortic endothelial cells (ECs) from humans, we collected genetic, transcriptomic, and four epigenomic phenotypes in a population of up to 150 human donors representing individuals of both sexes and three major ancestries. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 504 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA579487 Series Accession: GSE139377 ID: 200139377 1653. Epigenetic adaptation prolongs photoreceptor survival during retinal degeneration (Submitter supplied) Neural degenerative diseases often display a progressive loss of cells at as a stretched exponential ratedistribution. The mechanisms underlying the survival of a subset of clonal cells in a population beyond what is expected by chance alone remains unknown. To gain mechanistic insights underlying prolonged cellular survival, we used Spata7 mutant mice as a model and performed single-cell transcriptomic profiling of retinal tissue along the time course of photoreceptor degeneration. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL24247 8 Samples FTP download: GEO (H5, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA563908 Series Accession: GSE136880 ID: 200136880 1654. Stat3-Bdnf-TrkB axis promotes alveolar regeneration [ATAC-seq] (Submitter supplied) Regenerating new alveolar epithelium is essential for recovery from many lung diseases. This multi-cellular regenerative process occurs when type II alveolar pneumocytes (AT2), with support from mesenchymal niche cells, proliferate to generate more AT2 cells and transdifferentiate in type I pneumocytes. To elucidate how coordinated events between AT2 cells and mesenchyme restore alveolar epithelium we used unbiased genome-wide analysis of chromatin accessibility and gene expression in both cell types following acute lung injury. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548319 Series Accession: GSE132534 ID: 200132534 1655. Atg7-dependent autophagy regulates the naive to primed transition by selective Nanog degradation in mouse embryonic stem cells [ChIP-seq] (Submitter supplied) Autophagy is a conserved cellular mechanism to degrade unwanted cytoplasmic proteins and organelles to recycle their components, and it is proved to be critical for embryonic stem cell (ESC) self-renewal and somatic cell reprogramming. However, the role of autophagy in embryonic development remains elusive, and no information exists regarding its functions during the transition from naive to primed pluripotency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE151nnn/GSE151490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA635944 Series Accession: GSE151490 ID: 200151490 1656. Generation of Inner Ear Hair Cells by Direct Lineage Conversion of Primary Somatic Cells [ATAC-seq] (Submitter supplied) We purified seven different cell populations and performed RNA sequencing to profile transcriptional similarities and differences between them. The seven cell types were 1) Atoh1-GFP positive cochlear hair cells from the organ of Corti of postnatal day one mice, 2) Atoh1-GFP negative cells from the organ of Corti of postnatal day one mice, 3) Atoh1-GFP positive induced hair cells generated by overexpression of Six1, Atoh1, Pou4f3, and Gfi1, 4) dsRed transduced control mouse embryonic fibroblasts, 5) Atoh1-GFP positive Merkel cells from postnatal day 1 mice, 6) Atoh1-GFP positive Cerebellar granule precursor cells from postnatal day 1 mice, and 7) Atoh1-GFP positive Gut secretory cells from postnatal day one mice. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627751 Series Accession: GSE149258 ID: 200149258 1657. Chromatin state maintains human myeloid leukemia by regulating m6A demethylase ALKBH5 expression [ATAC-seq] (Submitter supplied) ALKBH5 is the RNA N(6)-methyladenosine (m6A) demethylase. To understhand the function and mechnism of ALKBH5 in human acute myeloid leukemia, we compared the translational efficiency in wild-type and ALKBH5-knock-down MOLM-13 cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146831/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA612061 Series Accession: GSE146831 ID: 200146831 1658. Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 47 Samples FTP download: GEO (BEDGRAPH, H5, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137673/ Series Accession: GSE137673 ID: 200137673 1659. Expression of RUNX1-ETO Rapidly Alters the Chromatin Landscape and Growth of Early Human Myeloid Precursor Cells (ATAC-Seq) (Submitter supplied) Acute myeloid leukemia is a hematopoietic malignancy caused by recurrent mutations in genes encoding transcriptional, epigenetic and/or signaling regulators. The t(8;21) translocation generates the aberrant transcription factor RUNX1-ETO, whose expression can be detected in utero but is insufficient to cause overt disease. Although patients harboring cells with the t(8;21) translocation have acquired additional mutations and show extensive epigenetic reprogramming, the effects directly and solely attributable to RUNX1-ETO expression are unclear. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA566184 Series Accession: GSE137667 ID: 200137667 1660. Prediabetes Induced by a Single Autoimmune B cell Clone (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114831/ Series Accession: GSE114831 ID: 200114831 1661. Prediabetes Induced by a Single Autoimmune B cell Clone [ATAC-seq] (Submitter supplied) SCNT-derived B cell model displays spontaneous germinal center reaction, infiltration of pancreas (in RAG1-/- background) and impaired glucose tolerance. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA472782 Series Accession: GSE114830 ID: 200114830 1662. Serine-threonine Kinase, ROCK2, Regulates Germinal Center B Cell Positioning and Cholesterol Biosynthesis (Submitter supplied) Splenic follicular B cells (FoB; B220+GL7-CD38hiCD23+) and Germinal Center B cells (GCB; B220+GL7+CD38lo) were FACS sorted from WT or CD23-Cre.Rock2 mice after 7d post-immunization with NP-CGG. RNA-seq was then employed to compare the transcriptome of GCBs from the indicated mice. Here we show that loss of ROCK2 leads to altered gene expression in GCBs. We also employed ATAC-seq analysis and found that differentially expressed genes from the ROCK2-deficient GC B cells contained loci that were enriched for IRF binding sites. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 16 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593194 Series Accession: GSE141328 ID: 200141328 1663. Atg7-dependent autophagy regulates the naive to primed transition by selective Nanog degradation in mouse embryonic stem cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL21273 41 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150870/ Series Accession: GSE150870 ID: 200150870 1664. Atg7-dependent autophagy regulates the naive to primed transition by selective Nanog degradation in mouse embryonic stem cells [ATAC-seq] (Submitter supplied) Autophagy is a conserved cellular mechanism to degrade unwanted cytoplasmic proteins and organelles to recycle their components, and it is proved to be critical for embryonic stem cell (ESC) self-renewal and somatic cell reprogramming. However, the role of autophagy in embryonic development remains elusive, and no information exists regarding its functions during the transition from naive to primed pluripotency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633889 Series Accession: GSE150866 ID: 200150866 1665. Atg7-dependent autophagy regulates the naive to primed transition by selective Nanog degradation in mouse embryonic stem cells [RNA-seq] (Submitter supplied) Autophagy is a conserved cellular mechanism to degrade unwanted cytoplasmic proteins and organelles to recycle their components, and it is proved to be critical for embryonic stem cell (ESC) self-renewal and somatic cell reprogramming. However, the role of autophagy in embryonic development remains elusive, and no information exists regarding its functions during the transition from naive to primed pluripotency. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21273 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633888 Series Accession: GSE150865 ID: 200150865 1666. Transcriptome and open chromatin analysis of 5-month mouse liver and blood by the TaRGET II consortium (Submitter supplied) The TaRGET (Toxicant Exposures and Responses by Genomic and Epigenomic Regulators of Transcription) program is a research consortium funded by the National Institute of Environmental Health Sciences (NIEHS). The goal of the collaboration is to address the role of environmental exposures in disease pathogenesis as a function of epigenome perturbation, including understanding the environmental control of epigenetic mechanisms and assessing the utility of surrogate tissue analysis in mouse models of disease-relevant environmental exposures (https://targetepigenomics.org). Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 6 related Platforms 849 Samples FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146508/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA610793 Series Accession: GSE146508 ID: 200146508 1667. Functional genomics of human colon organoids (ATAC-Seq) (Submitter supplied) Organoids are a valuable 3D model to study the differentiated functions of the human intestinal epithelium. They are a particularly powerful tool to measure epithelial transport processs in health and disease. Though biological assays such as organoid swelling and intraluminal pH measurements are well established, their underlying functional genomics are not well characterized. Here we combine genome-wide analysis of open chromatin by ATAC-seq with transcriptome mapping by RNA-seq to define the genomic signature of human intestinal organoids (HIOs). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589842 Series Accession: GSE140456 ID: 200140456 1668. Functional genomics of human colon organoids (RNA-Seq) (Submitter supplied) Organoids are a valuable 3D model to study the differentiated functions of the human intestinal epithelium. They are a particularly powerful tool to measure epithelial transport processs in health and disease. Though biological assays such as organoid swelling and intraluminal pH measurements are well established, their underlying functional genomics are not well characterized. Here we combine genome-wide analysis of open chromatin by ATAC-seq with transcriptome mapping by RNA-seq to define the genomic signature of human intestinal organoids (HIOs). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 3 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589843 Series Accession: GSE140455 ID: 200140455 1669. Enhancer reprogramming driven by high-order assemblies of transcription factors promotes phenotypic plasticity and breast cancer endocrine resistance [ATAC-Seq] (Submitter supplied) Cellular plasticity has emerged as an important mechanism of therapy resistance in cancers, yet the underlying molecular mechanisms remain unclear. Using an established breast cancer cellular model for endocrine resistance, we show that hormone resistance is associated with enhanced cellular plasticity, indicated by a general downregulation of luminal/epithelial differentiation markers and upregulation of basal/mesenchymal invasive markers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL21290 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527762 Series Accession: GSE128444 ID: 200128444 1670. Mechanisms of stretch-mediated skin expansion at single cell resolution [ATAC-seq] (Submitter supplied) The ability of the skin to expand in response to stretching has, for decades, been exploited in reconstructive surgery. Several studies have investigated the response of stretching epidermal cells in vitro. However, it remains unclear how mechanical forces affect epidermal stem cell behaviour in vivo. Here, we develop a mouse model in which the temporal consequences of the stretching the skin epidermis can be studied. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 2 Samples FTP download: GEO (BED, CSV, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523146 Series Accession: GSE126734 ID: 200126734 1671. BAMscale: quantification of DNA sequencing peaks and generation of scaled coverage tracks (Submitter supplied) We present a tool for processing NGS DNA-seq BAM files to quantify peaks and create coverage tracks from ChIP-seq, NS-seq, ATAC-seq, OK-seq, END-seq and replication timing data Organism: Homo sapiens; Mus musculus Type: Other; Third-party reanalysis Platform: GPL9115 3 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543507 Series Accession: GSE131417 ID: 200131417 1672. The chromatin state in WT and HPK1KO tumor specific T cells (Submitter supplied) We then investigated how HPK1 induces new changes by comparing the open chromatin regions (OCRs) with WT control and founded that the ATAC-seq tracks were aligned with the previously reported OCRs of exhausted . HPK1 knockout induced loss of peaks in loci enriched in exhausted T (Tex) cells (e.g., PD-1, TIM-3, LAG-3, and TOX locus), indicating that HPK1 knockout could overcome some negative effects caused by TME, ameliorate T cell exhaustion and thus extend their effector function (Figure S2F). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 5 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA633050 Series Accession: GSE150635 ID: 200150635 1673. Spen links RNA-mediated endogenous retrovirus silencing and X chromosome inactivation [ATAC-Seq] (Submitter supplied) We show that Spen, an Xist binding repressor protein essential for XCI, binds to ancient retroviral RNA transcribed genome-wide, performing a surveillance role to recruit chromatin silencing machinery to these parasitic loci. Spen inactivation leads to de-repression of endogenous retroviral (ERV) elements in embryonic stem cells, with gain of chromatin accessibility, active histone modifications, and ERV RNA transcription. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543419 Series Accession: GSE131374 ID: 200131374 1674. Chromatin accessibility analysis of induced trophoblast stem cells. (Submitter supplied) We report chromatin accessibility time-course profiling (ATAC-seq) of induced trophoblast stem cells (iTSCs) derived directly from human fibroblasts and naïve reprogramming intermediates. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA632913 Series Accession: GSE150590 ID: 200150590 1675. Exposure to mites sensitizes intestinal stem cell maintenance, splenic marginal zone B cell homeostasis, and heart development to Notch dosage and cooperativity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 14 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149992/ Series Accession: GSE149992 ID: 200149992 1676. Exposure to mites sensitizes intestinal stem cell maintenance, splenic marginal zone B cell homeostasis, and heart development to Notch dosage and cooperativity [ATAC-seq] (Submitter supplied) Cooperative DNA binding is a key feature of transcriptional regulation. Here we examined the role of cooperativity in Notch signaling by CRISPR-mediated engineering of mice in which neither Notch1 nor Notch2 can homo- or heterodimerize, essential for cooperative binding to sequence paired sites (SPS) located near many Notch-regulated genes. While most known Notch-dependent phenotypes were unaffected in Notch1/2 dimer-deficient mice, a subset of tissues proved highly sensitive to loss of cooperativity. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630745 Series Accession: GSE149990 ID: 200149990 1677. Chromatin accessibility analysis of intermediates during human primed and naïve reprogramming. (Submitter supplied) We report chromatin accessibility time-course profiling (ATAC-seq) of intermediate populations of reprogramming of human fibroblasts into primed and naïve pluripotent states Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18460 22 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA615864 Series Accession: GSE147641 ID: 200147641 1678. HRP2-DPF3a-BAF complex coordinates histone modification and chromatin remodeling to regulate myogenic gene transcription [ATAC-Seq] (Submitter supplied) Functional crosstalk between histone modifications and chromatin remodeling has emerged as a key regulatory mode of transcriptional control during cell fate decisions, but the underlying mechanisms are not fully understood. Here we demonstrate that HRP2-DPF3a-BAF complex coordinates histone H3 lysine 36 methylation (H3K36me) and ATP-dependent chromatin remodeling to regulate chromatin dynamic and gene transcription during myogenic differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623794 Series Accession: GSE148296 ID: 200148296 1679. Landscape of four exhausted CD8 T cell subsets (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 23 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149879/ Series Accession: GSE149879 ID: 200149879 1680. Epigenetic landscape of four exhausted CD8 T cell subsets (Submitter supplied) Open chromatin accessibility analysis of four defiined CD8 Tcell subsets to understand the mechanism of exhaustion hierarchy Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 11 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630423 Series Accession: GSE149877 ID: 200149877 1681. Chromatin accessibility in response to knockdown of GLI1 and SMARCA2 in GLI1-mediated gene expression. (Submitter supplied) GLI1 is a transcription factor correlated to decreased survival in several cancers. We have identified SMARCA2 as a co-regulator that enhances GLI1-mediated transcriptional activity and functions through the C-terminal transcriptional activation domain of GLI1. Central domains including the ATPase motif of SMARCA2 physically interact with GLI1. Evaluation of DNA density indicates GLI1, like SMARCA2, can increase the DNA accessibility with a preference for sites distal to gene transcription start sites and outside the promoter regions (i.e. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601229 Series Accession: GSE143684 ID: 200143684 1682. Chd1p recognizes H3K36Ac to maintain nucleosome positioning near the transcription start site (Submitter supplied) H3K36Ac promotes the remodeling activity of Chd1p to maintain chromatin stability at the 5’ ends of genes Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17342 28 Samples FTP download: GEO (BW, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA386275 Series Accession: GSE98804 ID: 200098804 1683. Pioneer factor GAF cooperates with PBAP and NURF to regulate transcription [CUT&RUN] (Submitter supplied) The Drosophila pioneer factor GAF is known to be essential for RNA Pol II promoter-proximal pausing and the removal of nucleosomes from a set of target promoters with GAGAG motifs. We and others have speculated that GAF recruits the ISWI family ATP-dependent chromatin remodeling complex NURF, on the basis that NURF and GAF are both required to remodel nucleosomes on an hsp70 promoter in vitro and that GAF interacts physically with NURF. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627973 Series Accession: GSE149338 ID: 200149338 1684. Pioneer factor GAF cooperates with PBAP and NURF to regulate transcription [RNA-seq] (Submitter supplied) The Drosophila pioneer factor GAF is known to be essential for RNA Pol II promoter-proximal pausing and the removal of nucleosomes from a set of target promoters with GAGAG motifs. We and others have speculated that GAF recruits the ISWI family ATP-dependent chromatin remodeling complex NURF, on the basis that NURF and GAF are both required to remodel nucleosomes on an hsp70 promoter in vitro and that GAF interacts physically with NURF. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing Platform: GPL19132 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627974 Series Accession: GSE149337 ID: 200149337 1685. Pioneer factor GAF cooperates with PBAP and NURF to regulate transcription [ATAC-seq] (Submitter supplied) The Drosophila pioneer factor GAF is known to be essential for RNA Pol II promoter-proximal pausing and the removal of nucleosomes from a set of target promoters with GAGAG motifs. We and others have speculated that GAF recruits the ISWI family ATP-dependent chromatin remodeling complex NURF, on the basis that NURF and GAF are both required to remodel nucleosomes on an hsp70 promoter in vitro and that GAF interacts physically with NURF. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 10 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627975 Series Accession: GSE149336 ID: 200149336 1686. Pioneer factor GAF cooperates with PBAP and NURF to regulate transcription [PRO-seq] (Submitter supplied) The Drosophila pioneer factor GAF is known to be essential for RNA Pol II promoter-proximal pausing and the removal of nucleosomes from a set of target promoters with GAGAG motifs. We and others have speculated that GAF recruits the ISWI family ATP-dependent chromatin remodeling complex NURF, on the basis that NURF and GAF are both required to remodel nucleosomes on an hsp70 promoter in vitro and that GAF interacts physically with NURF. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing Platform: GPL19132 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627967 Series Accession: GSE149332 ID: 200149332 1687. Niche-Specific Re-Programming of Epigenetic Landscapes Drives Myeloid Cell Diversity in NASH [RNA-seq] (Submitter supplied) Tissue resident macrophages and recruited monocyte-derived macrophages contribute to host defense but also play pathological roles in a diverse range of human diseases. Multiple macrophage phenotypes are often represented in a diseased tissue, but we lack a deep understanding of the mechanisms that control diversification. Here we use a combination of genetic, genomic, and imaging approaches to investigate the origins and epigenetic trajectories of hepatic myeloid cells during a diet-induced model of nonalcoholic steatohepatitis (NASH). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL21103 GPL19057 57 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527156 Series Accession: GSE128337 ID: 200128337 1688. Epigenetic deregulation of lamina-associated domains in Hutchinson-Gilford Progeria Syndrome (ATAC-Seq) (Submitter supplied) Hutchinson-Gilford Progeria Syndrome (HGPS) is a progeroid disease characterized by the early onset of some classically age-related phenotypes including arthritis, loss of body fat and hair and atherosclerosis. Cells from affected individuals express a mutant version of the nuclear envelope protein Lamin A (termed Progerin) and have previously been shown to exhibit prominent chromatin changes. Here, we identify epigenetic deregulation of lamina-associated domains (LADs) as a central feature in the molecular pathology of HGPS. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 8 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631249 Series Accession: GSE150136 ID: 200150136 1689. Single-nucleus RNA-seq and FISH reveal coordinated transcriptional activity in mammalian myofibers (Submitter supplied) Skeletal muscle fibers are large syncytia but it is currently unknown whether gene expression is coordinately regulated in their numerous nuclei. By snRNA-seq and snATAC-seq, we showed that slow, fast, myotendinous and neuromuscular junction myonuclei each have different transcriptional programs, associated with distinct chromatin states and combinations of transcription factors. In adult mice, identified myofiber types predominantly express either a slow or one of the three fast isoforms of Myosin heavy chain (MYH) proteins, while a small number of hybrid fibers can express more than one MYH. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA631015 Series Accession: GSE150065 ID: 200150065 1690. Immunogenomic identification and characterization of granulocytic myeloid derived suppressor cells in multiple myeloma (ATAC-Seq Neutrophils) (Submitter supplied) Purpose: we aimed at providing the phenotypic profile of G-MDSCs based on their prognostic significance in MM, immunosuppressive potential, and molecular program. Methods and results: The pre-established phenotype of G-MDSCs was evaluated in bone marrow samples from controls and MM patients using multidimensional flow cytometry and, surprisingly, we found that CD11b+CD14-CD15+CD33+HLADR- cells overlapped with common eosinophils and neutrophils, which were not expanded in MM patients. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630897 Series Accession: GSE150018 ID: 200150018 1691. Daxx-dependent chromatin accessibility changes in a mouse model of chronic pancreastitis (Submitter supplied) Chromatin accessibility was evaluated by ATAC-seq of mouse pancreas 5 days following chronic caerulein-induced pancreatitis. Four different genotypes were evaluated: i) wild-type, ii) Men1fl/flPdx1-CreTg, iii) Daxxfl/flPdx1-CreTg iv) Daxxfl/flMen1fl/flPdx1-CreTg. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE150nnn/GSE150011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA630891 Series Accession: GSE150011 ID: 200150011 1692. Quantitative trait loci mapped for TCF21 binding, chromatin accessibility and chromosomal looping in coronary artery smooth muscle cells reveal molecular mechanisms of coronary disease loci (ATAC-Seq) (Submitter supplied) To better understand the fundamental molecular mechanisms that contribute to complex human diseases such as coronary artery disease (CAD), we have created a catalog of genetic variants associated with three stages of transcriptional cis-regulation in primary human coronary artery vascular smooth muscle cells. To this end, we used a pooling approach to map quantitative trait locus associations (QTLs) for TCF21 binding (ChIPseq), chromatin accessibility (ATACseq), and chromosomal looping (HiC). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141748/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594623 Series Accession: GSE141748 ID: 200141748 1693. CTCF is dispensable for cell fate conversion but facilitates acute cellular responses [ATAC-seq] (Submitter supplied) Studies of genome topology, chromatin state and gene expression dynamic during human B cell to macrophage transdifferentiation with and without CTCF Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596486 Series Accession: GSE142301 ID: 200142301 1694. ATAC-seq in ARID1A WT or KO OVCA429 Cells after interferron treatment (Submitter supplied) Whether cancer driver mutation(s) directly drives cancer immune phenotype and immune tolerance remains a standing question. ARID1A is a core member of the polymorphic BAF chromatin remodeling complex. ARID1A mutations frequently occur in human cancers and drive cancer development. Here, we studied the molecular, cellular, and clinical impact of ARID1A gene status on cancer immunity. We demonstrate that ARID1A mutations, limited expression, and deficiency impair interferon(IFN)-responsive gene chromatin accessibility and expression, resulting in anemic T cell tumor infiltration, weakened tumor immunity, and shortened host survival in many human cancer histologies as well as in murine cancer models, and are negatively associated with immunotherapy response. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545316 Series Accession: GSE131915 ID: 200131915 1695. Chromatin remodeling in bovine embryos indicates species-specific regulation of genome activation (Submitter supplied) Characterization of genome-wide chromatin accessibility in bovine oocytes and preimplantation embryos using ATAC-seq Organism: Bos taurus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23055 30 Samples FTP download: GEO (BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601200 Series Accession: GSE143658 ID: 200143658 1696. Allele-specific open chromatin in human neurons elucidates functional noncoding disease variants (Submitter supplied) ASoC variants are prevalent and cell type-specific ASoC variants were over-represented in intergenic regions and active enhancers. The collection includes ATAC-Seq and RNA-Seq data that were taken from human iPS cells and their derived neuronal cells (neural progenitor cells, cortical glutamatergic neurons, GABAergic neurons, and dopaminergic neurons). Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL11154 118 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA529717 Series Accession: GSE129017 ID: 200129017 1697. Niche-Specific Re-Programming of Epigenetic Landscapes Drives Myeloid Cell Diversity in NASH [ChIP-seq] (Submitter supplied) Tissue resident macrophages and recruited monocyte-derived macrophages contribute to host defense but also play pathological roles in a diverse range of human diseases. Multiple macrophage phenotypes are often represented in a diseased tissue, but we lack a deep understanding of the mechanisms that control diversification. Here we use a combination of genetic, genomic, and imaging approaches to investigate the origins and epigenetic trajectories of hepatic myeloid cells during a diet-induced model of nonalcoholic steatohepatitis (NASH). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21103 GPL17021 27 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527154 Series Accession: GSE128336 ID: 200128336 1698. Niche-Specific Re-Programming of Epigenetic Landscapes Drives Myeloid Cell Diversity in NASH [ATAC-seq] (Submitter supplied) Tissue resident macrophages and recruited monocyte-derived macrophages contribute to host defense but also play pathological roles in a diverse range of human diseases. Multiple macrophage phenotypes are often represented in a diseased tissue, but we lack a deep understanding of the mechanisms that control diversification. Here we use a combination of genetic, genomic, and imaging approaches to investigate the origins and epigenetic trajectories of hepatic myeloid cells during a diet-induced model of nonalcoholic steatohepatitis (NASH). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21103 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527155 Series Accession: GSE128335 ID: 200128335 1699. Integrated single cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC sensitive cell lines (scRNA-Seq) (Submitter supplied) The identification of the potential mechanisms of resistance while tumor cells still respond to therapy is critical to develop combination therapies to delay acquired resistance. Cetuximab, an anti-EGFR therapy, is the only targeted therapy available for head and neck squamous cell carcinoma (HNSCC). We generated the first comprehensive multi-omics, bulk and single cell data in sensitive HNSCC cells to identify relevant transcriptional and epigenetic changes that are an immediate response to cetuximab in sensitive cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565769 Series Accession: GSE137524 ID: 200137524 1700. Integrated single cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC sensitive cell lines (Submitter supplied) The identification of the potential mechanisms of resistance while tumor cells still respond to therapy is critical to develop combination therapies to delay acquired resistance. Cetuximab, an anti-EGFR therapy, is the only targeted therapy available for head and neck squamous cell carcinoma (HNSCC). We generated the first comprehensive multi-omics, bulk and single cell data in sensitive HNSCC cells to identify relevant transcriptional and epigenetic changes that are an immediate response to cetuximab in sensitive cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 18 Samples FTP download: GEO (BROADPEAK, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559403 Series Accession: GSE135604 ID: 200135604 1701. NAD+ controls circadian reprogramming through PER2 nuclear translocation to counter aging (Submitter supplied) Disrupted sleep-wake and molecular circadian rhythms are a feature of aging associated with metabolic disease and reduced levels of NAD+, yet whether changes in nucleotide metabolism control circadian behavioral and genomic rhythms remains unknown. Here we reveal that supplementation with the NAD+ precursor nicotinamide riboside (NR) markedly reprograms metabolic and stress-response pathways that decline with aging through inhibition of the clock repressor PER2. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 199 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA553257 Series Accession: GSE133989 ID: 200133989 1702. Integrated single-cell and bulk gene expression and ATAC-seq reveals heterogeneity and early changes in pathways associated with resistance to cetuximab in HNSCC-sensitive cell lines (Submitter supplied) Background: Identifying potential resistance mechanisms while tumour cells still respond to therapy is critical to delay acquired resistance. Methods: We generated the first comprehensive multi-omics, bulk and single-cell data in sensitive head and neck squamous cell carcinoma (HNSCC) cells to identify immediate responses to cetuximab. Two pathways potentially associated with resistance were focus of the study: regulation of receptor tyrosine kinases by TFAP2A transcription factor, and epithelial-to-mesenchymal transition (EMT). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 33 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471358 Series Accession: GSE114446 ID: 200114446 1703. ATAC-seq of CD4+ T cell subsets in LCMV infection (Submitter supplied) T follicular helper (TFH) cells are a distinct type of CD4 T cells that are essential for most antibody and B lymphocyte responses. TFH regulation and dysregulation is involved in a range of diseases. Bcl6 is the lineage defining transcription factor of TFH cells and its activity is essential for TFH cell differentiation and function. However, how Bcl6 controls TFH biology has largely remained unclear, at least in part due to intrinsic challenges of connecting repressors to gene upregulation in complex cell types with multiple possible differentiation fates. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 21 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565269 Series Accession: GSE137383 ID: 200137383 1704. Comparative transcriptomic and epigenomic analysis identifies key regulators of injury response and neurogenic competence in retinal glia (Submitter supplied) Injury induces retinal Muller glia of non-mammalian, but not mammalian, vertebrates to generate neurons. To identify gene regulatory networks that control neurogenic competence in retinal glia, we used bulk and single-cell RNA-seq and ATAC-seq analysis to comprehensively profile gene expression and chromatin conformation in Muller glia from zebrafish, chick and mice. This was conducted during glial development, following inner and outer retinal injury, as well as following treatment with extrinsic factors that induce glial reprogramming. more... Organism: Danio rerio; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20828 GPL19057 145 Samples FTP download: GEO (NARROWPEAK, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA558770 Series Accession: GSE135406 ID: 200135406 1705. Identification of Scrt1, a new transcriptional regulator of beta-cell maturation using chromatin accessibility variations (Submitter supplied) Pancreatic beta-cells are highly specialized cells that produce and release insulin in response to nutrients, hormones and neurotransmitters. Glucose-induced insulin secretion, a unique feature of fully differentiated beta-cells, is only acquired after birth and is preceded by a phase of intense beta-cell proliferation. These events occurring in the neonatal period are critical for the establishment of an appropriate functional beta-cell mass covering the insulin needs throughout life. more... Organism: Rattus norvegicus Type: Expression profiling by high throughput sequencing Platform: GPL22396 10 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540879 Series Accession: GSE130651 ID: 200130651 1706. Caloric Restriction Triggers Anti-tumor Immunity via a Mechanism Involving NK Cells and Transcription Factor Eomesdermin (Submitter supplied) Our work argues that CR treatment enhances tumor-extrinsic anticancer effect by metabolic and transcriptional regulation of ILC-1 subpopulation and function Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 22 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497457 Series Accession: GSE121488 ID: 200121488 1707. Ectopic Tcf1 expression reprograms exhausted CD8+ T cells to acquire stem cell-like features [ATAC-seq] (Submitter supplied) The goal of this study is to determine the capacity of Tcf1 to reprogram exhausted CD8+ T cells for function restoration. Tex cells elicited by chronic infection contain a CXCR5+Tim3– subset that has stem cell-like self-renewing capacity and expresses an elevated level of Tcf1 (termed Tex-stem), and Tex-stem cells depend on Tcf1 for generation and persistence. We show that ectopic Tcf1 expression profoundly affected the chromatin accessibility of Tex cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA578114 Series Accession: GSE139024 ID: 200139024 1708. A hybrid signal/sequence model to detect RNA polymerase activity in ATAC-seq (Submitter supplied) We explore different uses of machine learning classifiers, including neural networks, to combine the “signal” from ATAC-seq with its underlying genome sequence in order to classify ATAC-seq peaks on the presence or absence of transcription. We show how a hybrid signal/sequence representation, classified using recurrent neural networks (RNNs), yields the best performance across different cell types. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL18573 2 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA534275 Series Accession: GSE130205 ID: 200130205 1709. Genome-wide maps of chromatin state in CD8 Naïve T cells upon differentiation and subsequent reversion to Naïve-like phenotype (Submitter supplied) We have employed whole genome ATAC-seq to profile the chromatin accssibility landscape of naive CD8+ T cells (TN) and these same cells following activation and differentiation to CM/EM and following incubation with homeostatic cytokines, a reverted naive-like phenotype (TNrev). Four umbilical cord blood samples were used to enrich for TN and to produce the respective EM CM and TNrev phenotypes. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 14 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493767 Series Accession: GSE120618 ID: 200120618 1710. Single-cell ftATACseq data of mouse thymocytes (Submitter supplied) This dataset is related to our recent study "APEC: an accesson-based method for single-cell chromatin accessibility analysis". We adopted a fluorescent tagmentation-based single-cell ATAC-seq technique (ftATAC-seq) to investigated the per cell regulome dynamics of mouse thymocytes. Associated with ftATAC-seq, APEC revealed a detailed epigenomic heterogeneity of thymocytes, characterized the developmental trajectory and predicted the regulators that control the stages of maturation process. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 704 Samples FTP download: GEO (BED, CSV, MTX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA628737 Series Accession: GSE149480 ID: 200149480 1711. Developmental trajectory of pre-hematopoietic stem cell formation from endothelium (scATAC-seq data set) (Submitter supplied) To examine the cell and molecular transitions between endothelial (E), hemogenic endothelial (HE), and intra-arterial clusters (IAC) cells, we profiled ~1700 cells from the caudal arteries (dorsal aorta, umbilical, vitelline) of embryonic day (E) 10.5 mouse embryos by single-cell ATAC sequencing (scATAC-Seq). We found extensive cis--regulatory landscape change during the endothelial to hematopoietic transition (EHT). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 1 Sample FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564577 Series Accession: GSE137115 ID: 200137115 1712. Genome wide chromatin accessibilty changes associated with JUN expression in human normal and IPF lung fiborblasts (Submitter supplied) We found that JUN expression is increased in many human fibrotic diseases and that systemic induction of Jun in mice resulted in development of fibrosis of multiple organs. To identify the changes in chromatin accessibility associated with JUN, we worked with primary human fibrotic lung fibroblasts that have normal or Knock-out levels of JUN expression and performed ATAC-seq analysis in both of them. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BIGWIG, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA472802 Series Accession: GSE114844 ID: 200114844 1713. A Chromatin Accessibility Atlas of the Developing Human Telencephalon (Submitter supplied) Gene expression differs between cell types and regions within complex tissues such as the developing brain. To discover regulatory elements underlying this specificity, we generated genome-wide maps of chromatin accessibility in nine anatomically-defined regions of the developing human telencephalon. Additionally, we defined the histone modification landscape of the prefrontal cortex and generated chromatin accessibility maps of its upper and deep layers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL27467 GPL16791 40 Samples FTP download: GEO (BED, BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149268/ Series Accession: GSE149268 ID: 200149268 1714. A complex regulatory landscape involved in the development of external genitals [ATAC-Seq] (Submitter supplied) In vertebrates, developmental genes are often controlled by large regulatory landscapes matching the dimensions of topologically associating domains (TADs). In various ontogenic contexts, the associated constitutive chromatin backbone is modified by fine-tuned specific variations in enhancer-enhancer and enhancer-promoter interaction profiles. In this work, we use a TAD flanking the HoxD gene cluster as a paradigm to address the question of how these complex regulatory architectures are formed and how they are de-constructed once their function has been achieved. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 15 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138513/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA576225 Series Accession: GSE138513 ID: 200138513 1715. The NSD2 p.E1099K Mutation is Enriched at Relapse and Confers Drug Resistance in a Cell Context Dependent Manner in Pediatric Acute Lymphoblastic Leukemia (ATAC-Seq) (Submitter supplied) The NSD2 p.E1099K (EK) mutation increases methyltransferase activity and is observed in 10% of acute lymphoblastic leukemia (ALL) samples with enrichment at relapse indicating a role in clonal evolution and drug resistance. To discover mechanisms that mediate the clonal expansion, we engineered B-ALL cell lines (Reh, 697) to overexpress wildtype (WT) and EK NSD2, but observed no differences in proliferation, clonal growth, or chemosensitivity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA627479 Series Accession: GSE149155 ID: 200149155 1716. ATACseq measurements during cord blood-derived human erythropoiesis (Submitter supplied) CD34+ cells were subjected to ex vivo erythropoiesis according to the protocol described in Palii et al. (doi: 10.3791/2813. J Vis Exp. 53, 2011). Samples were harvested at different time points and analyzed by ATACseq. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 7 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565446 Series Accession: GSE137446 ID: 200137446 1717. Cross-species analysis of melanoma enhancer logic using deep learning (Submitter supplied) Here, we combine comparative regulatory genomics with machine learning to investigate enhancer logic in melanoma. Through epigenomics profiling of 26 melanoma cell lines across six species, we examine the conservation of the two main melanoma states and underlying master regulators. By training a deep neural network on topic models derived from the human lines, we were able to classify not only human melanoma enhancers, but also regulatory regions in the other species. more... Organism: Homo sapiens; Canis lupus familiaris; Sus scrofa domesticus; Mus musculus; Danio rerio; Equus caballus Type: Genome binding/occupancy profiling by high throughput sequencing 7 related Platforms 23 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596273 Series Accession: GSE142238 ID: 200142238 1718. Integrative analysis of non-coding variants in human leukemia (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 133 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137656/ Series Accession: GSE137656 ID: 200137656 1719. ATAC-seq analysis of K562, MKPL-1, MV4-11, NB4 and U937 leukemia cell lines (Submitter supplied) Mutations in protein-coding genes are well established as the basis for human cancer, yet it remains elusive how alterations within non-coding genome, a substantial fraction of which contain cis-regulatory elements (CREs), contribute to cancer pathophysiology. Here we developed an integrative approach to systematically identify and characterize non-coding regulatory variants with functional consequences in human hematopoietic malignancies. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 5 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA566146 Series Accession: GSE137647 ID: 200137647 1720. Lineage-specific chromatin binding of FOXA1 is regulated by LSD1-mediated demethylation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL11154 62 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE149nnn/GSE149007/ Series Accession: GSE149007 ID: 200149007 1721. Discrete regulation of β-catenin-mediated transcription governs identity of intestinal epithelial stem cells [ATAC-Seq] (Submitter supplied) The homeostasis of the gut epithelium relies upon continuous renewal and proliferation of crypt-resident intestinal epithelial stem cells (IESCs). Wnt/β-catenin signaling is required for IESC maintenance, however, it remains unclear how this pathway selectively governs the identity and proliferative decisions of IESCs. Here, we demonstrate that C-terminally-recruited transcriptional co-factors of β-catenin act as all-or-nothing regulators of Wnt-target gene expression. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA626596 Series Accession: GSE148940 ID: 200148940 1722. Chromatin accessibility and transcriptome changes in injured retinal ganglion cells (RGCs) after Arid1a deletion (Submitter supplied) To gain a deeper insight into roles of Arid1a in injured retinal ganglion cells (RGCs), we performed ATAC-seq and RNA-seq to analyze the genome-wide changes of chromatin accessibility and transcriptome changes before and after Arid1a deletion in RGCs of the adult mouse using Cre-lox system. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 10 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622266 Series Accession: GSE147844 ID: 200147844 1723. H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles [ATAC-Seq - muscle] (Submitter supplied) While the histone variant H2A.Z is known to be required for mitosis, it is also enriched in nucleosomes surrounding the transcription start site of active promoters, implicating H2A.Z in transcription. However, evidence obtained so far mainly rely on correlational data generated in actively dividing cells. We have exploited a paradigm in which transcription is uncoupled from the cell cycle by developing an in vivo system to inactivate H2A.Z in terminally differentiated post-mitotic muscle cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL28430 6 Samples FTP download: GEO (BB, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA625987 Series Accession: GSE148865 ID: 200148865 1724. Cis-regulatory analysis of Onecut1 in fate-restricted retinal progenitor cells (Submitter supplied) Background: The vertebrate retina consists of six major classes of neuronal cells. During development, these cells are generated from a pool of multipotent retinal progenitor cells (RPCs) that express the gene Vsx2. Fate-restricted RPCs have recently been identified, with limited mitotic potential and cell fate possibilities compared to multipotent RPCs. One population of fate-restricted RPCs, marked by activity of the regulatory element ThrbCRM1, gives rise to both cone photoreceptors and horizontal cells. more... Organism: Gallus gallus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19005 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591782 Series Accession: GSE141019 ID: 200141019 1725. Telomere dysfunction cooperates with epigenetic alterations to impair murine embryonic stem cell fate commitment (Submitter supplied) This study demonstrates a specific cooperativity between perturbations in histone methylation and eroded telomeres to destabilize the differentiation of murine embryonic stem cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 56 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA541428 Series Accession: GSE130780 ID: 200130780 1726. Regulatory constraint and selection during human knee evolution drive modern osteoarthritis risk (Submitter supplied) The evolution of human bipedalism exposed the knee to unique biomechanical challenges, requiring changes in knee anatomy giving rise to the modern-day configuration. In order to better understand the relationship between derived knee morphology and the genetic factors associated with osteoarthritis risk, we performed epigenetic profiling of murine forelimb/hindlimb growth plates to identify regulatory elements shaping formation of specific knee structures, identifying signals of ancient positive selection upon which more recent genetic drift overlaps risk-associated loci. more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 20 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506781 Series Accession: GSE122877 ID: 200122877 1727. An integrated multi-omics approach identifies the landscape of interferon-a-mediated responses of human pancreatic beta cells [RNA-seq 2] (Submitter supplied) Proinflammatory cytokines are important mediators of pancreatic beta cell dysfunction and demise in type 1 diabetes (T1D). We presently characterized human beta cell responses to IFNa by combining ATAC-seq, RNA-seq and proteomics assays. The initial beta cell response to IFNa was characterized by major chromatin remodeling, followed by marked changes in transcriptional and translational regulation. IFNa-induced changes in alternative splicing (AS) and first exon usage increased the diversity of transcripts expressed by beta cells. This, combined with changes observed on protein modification/degradation, ER stress and MHC class I, may significantly expand the peptide repertoire presented by beta cells to the immune system. On the other hand, beta cells up-regulated checkpoint proteins, such as PDL1 and HLA-E, that may protect them against the autoimmune assault. Data mining of the present multi-omics analysis led to the identification of two compound classes that revert IFNa effects on human beta cells and may be translated to clinical trials. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 36 Samples FTP download: GEO (GTF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA622979 Series Accession: GSE148058 ID: 200148058 1728. An integrated multi-omics approach identifies the landscape of interferon-a-mediated responses of human pancreatic beta cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 82 Samples FTP download: GEO (GTF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133221/ Series Accession: GSE133221 ID: 200133221 1729. An integrated multi-omics approach identifies the landscape of interferon-a-mediated responses of human pancreatic beta cells [ATAC-seq] (Submitter supplied) Proinflammatory cytokines are important mediators of pancreatic beta cell dysfunction and demise in type 1 diabetes (T1D). We presently characterized human beta cell responses to IFNa by combining ATAC-seq, RNA-seq and proteomics assays. The initial beta cell response to IFNa was characterized by major chromatin remodeling, followed by marked changes in transcriptional and translational regulation. IFNa-induced changes in alternative splicing (AS) and first exon usage increased the diversity of transcripts expressed by beta cells. This, combined with changes observed on protein modification/degradation, ER stress and MHC class I, may significantly expand the peptide repertoire presented by beta cells to the immune system. On the other hand, beta cells up-regulated checkpoint proteins, such as PDL1 and HLA-E, that may protect them against the autoimmune assault. Data mining of the present multi-omics analysis led to the identification of two compound classes that revert IFNa effects on human beta cells and may be translated to clinical trials. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 16 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA550406 Series Accession: GSE133219 ID: 200133219 1730. An integrated multi-omics approach identifies the landscape of interferon-a-mediated responses of human pancreatic beta cells [RNA-seq] (Submitter supplied) Proinflammatory cytokines are important mediators of pancreatic beta cell dysfunction and demise in type 1 diabetes (T1D). We presently characterized human beta cell responses to IFNa by combining ATAC-seq, RNA-seq and proteomics assays. The initial beta cell response to IFNa was characterized by major chromatin remodeling, followed by marked changes in transcriptional and translational regulation. IFNa-induced changes in alternative splicing (AS) and first exon usage increased the diversity of transcripts expressed by beta cells. This, combined with changes observed on protein modification/degradation, ER stress and MHC class I, may significantly expand the peptide repertoire presented by beta cells to the immune system. On the other hand, beta cells up-regulated checkpoint proteins, such as PDL1 and HLA-E, that may protect them against the autoimmune assault. Data mining of the present multi-omics analysis led to the identification of two compound classes that revert IFNa effects on human beta cells and may be translated to clinical trials. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 30 Samples FTP download: GEO (GTF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA550411 Series Accession: GSE133218 ID: 200133218 1731. Disrupting mitochondrial copper distribution inhibits leukemic stem cell self-renewal (Submitter supplied) Leukemic stem cells (LSC) rely on oxidative metabolism and are differentially sensitive to targeting mitochondrial pathways, which spares normal hematopoietic cells. A subset of mitochondrial proteins are folded in the intermembrane space via the mitochondrial intermembrane assembly (MIA) pathway. We found increased mRNA expression of MIA pathway substrates in acute myeloid leukemia (AML) stem cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL24676 25 Samples FTP download: GEO (BIGWIG, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA609914 Series Accession: GSE146252 ID: 200146252 1732. The role of Erg in B cell development (ATAC-Seq) (Submitter supplied) ATAC-seq of pre-proB, proB and preB populations from Ergfl/fl bone marrow, pre-proB cell population from Rag1CreT/+;ErgΔ/Δ bone marrow, and pre-proB, proB and preB populations from from Rag1CreT/+;ErgΔ/Δ;IgHVH10tar bone marrow. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 7 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA549274 Series Accession: GSE132852 ID: 200132852 1733. Dynamics of the 4D genome during in vivo lineage specification and differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL19057 94 Samples FTP download: GEO (MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137477/ Series Accession: GSE137477 ID: 200137477 1734. Dissection of the 4D chromatin structure of the alpha-globin locus through in vivo erythroid differentiation with extreme spatial and temporal resolution [ATAC-seq] (Submitter supplied) Precise gene expression patterns during mammalian development are controlled by regulatory elements in the non-coding genome. Active enhancer elements interact with gene promoters within Topologically Associating Domains (TADs). However, the precise relationships between chromatin accessibility, nuclear architecture and gene activation are not completely understood. Here, we present Tiled-C, a new Chromosome Conformation Capture (3C) technology, which allows for the generation of high-resolution contact matrices of loci of interest at unprecedented depth, and which can be optimized for as few as 2,000 cells of input material. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 29 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564576 Series Accession: GSE137114 ID: 200137114 1735. Predominant Requirement of Mitochondrial Transcriptional Factor A in Tissue-resident Regulatory T cell Maintenance and Function (Submitter supplied) Regulatory T cells (Tregs) are pivotal for immune suppression. Cellular metabolism is important for Treg homeostasis and function. However, the exact role of mitochondrial respiration in Tregs remains elusive. Mitochondrial transcription factor A (Tfam) is essential for mitochondrial respiration and controls mitochondrial DNA replication, transcription and packaging. Here we show that genetic ablation of Tfam in Tregs impairs Treg maintenance in non-lymphoid tissues at the steady state and in tumor. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 10 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545234 Series Accession: GSE131883 ID: 200131883 1736. KAT3-dependent acetylation of cell type-specific genes maintains neuronal identity in the adult mouse brain (Submitter supplied) The acquisition of neuronal identity requires the coordinated action of transcription factors and chromatin-modifying enzymes. However, little is known about the mechanisms that are responsible for maintaining neuronal identity throughout life. The paralogous lysine acetyltransferases CBP and p300 are both essential during development, but their specific function in postmitotic neurons remains unclear. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 40 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA549701 Series Accession: GSE133018 ID: 200133018 1737. Estrogen receptor alpha mutations in breast cancer cells cause gene expression changes through constant activity and through secondary effects [ATAC-seq] (Submitter supplied) While breast cancer patients with tumors that express estrogen receptor α (ER) generally respond well to hormone therapies that block ER’s actions, a significant number relapse. Approximately 30% of these recurrences harbor activating mutations in ER’s ligand binding domain. ER mutations have been shown to confer ligand-independent function to ER; however, much is still unclear regarding the effect of mutant ER beyond its estrogen independence. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 26 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE148nnn/GSE148278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA623672 Series Accession: GSE148278 ID: 200148278 1738. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19132 GPL25244 GPL21306 429 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141590/ Series Accession: GSE141590 ID: 200141590 1739. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics [10X_scRNAseq] (Submitter supplied) Enhancers act as docking stations in the genome to which transcription factors bind, tightly regulating gene expression. Although single-cell technologies allow measuring chromatin accessibility or gene expression in each individual cell, exploiting both layers towards bona fide gene regulatory networks and enhancers is still a challenge. Here, we independently generate comprehensive single-cell transcriptome and epigenome atlases of the Drosophila eye-antennal disc and propose the spatial integration of single-cell RNA-seq and single-cell ATAC-seq data using a virtual latent space that mimics the spatial organization of the 2D tissue. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing Platform: GPL21306 1 Sample FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594014 Series Accession: GSE141589 ID: 200141589 1740. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics [10X_scATACseq] (Submitter supplied) Enhancers act as docking stations in the genome to which transcription factors bind, tightly regulating gene expression. Although single-cell technologies allow measuring chromatin accessibility or gene expression in each individual cell, exploiting both layers towards bona fide gene regulatory networks and enhancers is still a challenge. Here, we independently generate comprehensive single-cell transcriptome and epigenome atlases of the Drosophila eye-antennal disc and propose the spatial integration of single-cell RNA-seq and single-cell ATAC-seq data using a virtual latent space that mimics the spatial organization of the 2D tissue. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 1 Sample FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594015 Series Accession: GSE141586 ID: 200141586 1741. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics [Omni-ATACseq] (Submitter supplied) Enhancers act as docking stations in the genome to which transcription factors bind, tightly regulating gene expression. Although single-cell technologies allow measuring chromatin accessibility or gene expression in each individual cell, exploiting both layers towards bona fide gene regulatory networks and enhancers is still a challenge. Here, we independently generate comprehensive single-cell transcriptome and epigenome atlases of the Drosophila eye-antennal disc and propose the spatial integration of single-cell RNA-seq and single-cell ATAC-seq data using a virtual latent space that mimics the spatial organization of the 2D tissue. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19132 GPL25244 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594008 Series Accession: GSE141584 ID: 200141584 1742. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics [FluidigmC1_scATACseq] (Submitter supplied) Enhancers act as docking stations in the genome to which transcription factors bind, tightly regulating gene expression. Although single-cell technologies allow measuring chromatin accessibility or gene expression in each individual cell, exploiting both layers towards bona fide gene regulatory networks and enhancers is still a challenge. Here, we independently generate comprehensive single-cell transcriptome and epigenome atlases of the Drosophila eye-antennal disc and propose the spatial integration of single-cell RNA-seq and single-cell ATAC-seq data using a virtual latent space that mimics the spatial organization of the 2D tissue. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 384 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594010 Series Accession: GSE141580 ID: 200141580 1743. Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics [ATACseq] (Submitter supplied) Enhancers act as docking stations in the genome to which transcription factors bind, tightly regulating gene expression. Although single-cell technologies allow measuring chromatin accessibility or gene expression in each individual cell, exploiting both layers towards bona fide gene regulatory networks and enhancers is still a challenge. Here, we independently generate comprehensive single-cell transcriptome and epigenome atlases of the Drosophila eye-antennal disc and propose the spatial integration of single-cell RNA-seq and single-cell ATAC-seq data using a virtual latent space that mimics the spatial organization of the 2D tissue. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 29 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593991 Series Accession: GSE141573 ID: 200141573 1744. Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes (scATAC-seq) (Submitter supplied) The pool of beta cell-specific CD8+ T-cells in type 1 diabetes (T1D) sustains an autoreactive potential despite having access to a constant source of antigen. To investigate the long-lived nature of these cells, we established a DNA methylation-based T cell “multipotency index” and found that beta cell-specific CD8+ T-cells retained a stem-like epigenetic multipotency score. Single cell ATAC-seq analysis confirmed the co-existence of naive and effector-associated epigenetic programs in individual beta cell-specific CD8+ T-cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 5 Samples FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604598 Series Accession: GSE144692 ID: 200144692 1745. Beta cell-specific CD8+ T cells maintain stem-cell memory-associated epigenetic programs during type 1 diabetes (WGBS) (Submitter supplied) The pool of beta cell-specific CD8+ T-cells in type 1 diabetes (T1D) sustains an autoreactive potential despite having access to a constant source of antigen. To investigate the long-lived nature of these cells, we established a DNA methylation-based T cell “multipotency index” and found that beta cell-specific CD8+ T-cells retained a stem-like epigenetic multipotency score. Single cell ATAC-seq analysis confirmed the co-existence of naive and effector-associated epigenetic programs in individual beta cell-specific CD8+ T-cells. more... Organism: Homo sapiens; Mus musculus Type: Methylation profiling by high throughput sequencing Platforms: GPL24676 GPL24247 34 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604599 Series Accession: GSE144691 ID: 200144691 1746. Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes [RNA-seq] (Submitter supplied) STAG2 encodes a cohesin component and is frequently mutated in myeloid neoplasms, showing highly significant co-mutation patterns with other drivers, including RUNX1. However, the molecular basis of cohesin-mutated leukemogenesis remains poorly understood. Here we show a critical role of an interplay between Stag2 and Runx1 in the regulation of enhancer-promoter looping and transcription in hematopoiesis. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL17021 GPL24676 35 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544088 Series Accession: GSE131581 ID: 200131581 1747. Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes [Hi-C] (Submitter supplied) STAG2 encodes a cohesin component and is frequently mutated in myeloid neoplasms, showing highly significant co-mutation patterns with other drivers, including RUNX1. However, the molecular basis of cohesin-mutated leukemogenesis remains poorly understood. Here we show a critical role of an interplay between Stag2 and Runx1 in the regulation of enhancer-promoter looping and transcription in hematopoiesis. more... Organism: Homo sapiens; Mus musculus Type: Other Platforms: GPL24247 GPL24676 16 Samples FTP download: GEO (BEDPE) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544086 Series Accession: GSE131580 ID: 200131580 1748. Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes [ChIP-seq] (Submitter supplied) STAG2 encodes a cohesin component and is frequently mutated in myeloid neoplasms, showing highly significant co-mutation patterns with other drivers, including RUNX1. However, the molecular basis of cohesin-mutated leukemogenesis remains poorly understood. Here we show a critical role of an interplay between Stag2 and Runx1 in the regulation of enhancer-promoter looping and transcription in hematopoiesis. more... Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL24247 GPL17021 52 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544087 Series Accession: GSE131577 ID: 200131577 1749. Combined Cohesin-Runx1 Deficiency Synergistically Perturbs Chromatin Looping and Causes Myelodysplastic Syndromes [ATAC-seq] (Submitter supplied) STAG2 encodes a cohesin component and is frequently mutated in myeloid neoplasms, showing highly significant co-mutation patterns with other drivers, including RUNX1. However, the molecular basis of cohesin-mutated leukemogenesis remains poorly understood. Here we show a critical role of an interplay between Stag2 and Runx1 in the regulation of enhancer-promoter looping and transcription in hematopoiesis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 20 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544085 Series Accession: GSE131573 ID: 200131573 1750. Mouse models of neutropenia reveal progenitor-stage-specific defects [scATAC-Seq] (Submitter supplied) Advances in genetics and sequencing have lead to a deluge of disease-associated and disease-causing genetic alterations. Resolving causality between genetics and disease requires generating accurate models for molecular dissection; however, the rapid expansion of single-cell landscapes presents a major challenge to accurate comparisons between mutants and their wild type equivalents. Here, we generated mouse models of human severe congenital neutropenia (SCN) using patient-derived mutations in the Growth factor independent-1 (GFI1) transcription factor. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 3 Samples FTP download: GEO (H5, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596750 Series Accession: GSE142358 ID: 200142358 1751. Alteration of CTCF associated chromatin neighborhood inhibits TAL1-driven oncogenic transcription program and leukemogenesis (Submitter supplied) Aberrant activation of the TAL1 oncogene is associated with up to 60% of T-ALL patients and is involved in CTCF mediated genome organization within the TAL1 locus, suggesting the importance of the CTCF boundary in the molecular pathogenesis of T-ALL. Here, we show that deletion of CTCF binding site (CBS) or alternation of CTCF boundary orientation alters expression of the TAL1 oncogene in a cell context dependent manner. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL16791 GPL24676 24 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA558386 Series Accession: GSE135320 ID: 200135320 1752. HOX13-dependent chromatin accessibility underlies the transition towards the digit development program[ATAC-Seq] (Submitter supplied) Pioneer factors are transcription factors able to recognize their target site even concealed in “closed” chromatin, eventually eliciting the switch to accessible targets for other transcription factors and the transcriptional machinery. As such, pioneer factors play a key role in switching cell fate. Here, we provide evidence that HOXA13 and HOXD13 (HOX13 hereafter), two transcription factors of the Hox family of developmental genes, act as pioneer factors in the developing limb. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA508888 Series Accession: GSE123481 ID: 200123481 1753. Attenuated epigenetic suppression of muscle stem cell necroptosis is required for efficient regeneration of dystrophic muscle [ATAC-Seq] (Submitter supplied) We performed a thorough study to analyze the epigenetic suppression of genes enabling programmed cell death as part of the muscle regeneration program. ATACseq analysis here serves as a method to compare the chromatin state and accessibilty of MuSCs in their quiescent state. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481035 Series Accession: GSE117092 ID: 200117092 1754. DNMT3A and TET2 Mutations Increase Hematopoietic Stem Cell Fitness Through Distinct Mechanisms (Submitter supplied) Epigenetic modifying enzymes DNMT3A and TET2 are recurrently mutated in hematological disorders despite possessing opposing biochemical functions in the DNA methylation processes. Using conditional ablation, we show these contrasting genotypes result in different functional effects in hematopoietic stem cells (HSCs). Loss of Dnmt3a bestows enhanced self-renewal on HSCs in serial, competitive repopulation assays while Tet2 loss functionally depletes HSCs after a tertiary transplant despite an initial competitive advantage. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 36 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587521 Series Accession: GSE139911 ID: 200139911 1755. NFI Transcription Factors Govern Stem Cell Chromatin Accessibility and Guard Against Irreversible Hair Loss [ATAC-seq] (Submitter supplied) Tissue homeostasis and regeneration rely upon resident stem cells (SCs), whose behavior is regulated through niche-dependent crosstalk. The mechanisms underlying SC maintenance are still unfolding. Here, using hair follicles (HFs) as model and spatiotemporal gene ablation in mice, we uncover transcription factors (TFs) NFIB and NFIX as guardians of the process. Complete NFI ablation causes SC depletion and hair loss which resembles irreversible alopecia in humans, who intriguingly also display reduced NFI. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA557507 Series Accession: GSE135144 ID: 200135144 1756. Inhibition of glycolysis in pathogenic TH17 cells through targeting a miR-21-Peli1-c-Rel pathway prevents autoimmunity (Submitter supplied) It is well known that some pathogenic cells have enhanced glycolysis, the regulatory network leading to increased glycolysis are not well characterized. Here, we show that CNS-infiltrated pathogenic TH17 cells from diseased mice specifically upregulate glycolytic pathway genes compared to homeostatic intestinal TH17 cells. Bioenergetic assay and metabolomics analyses indicate that in vitro derived pathogenic TH17 cells are highly glycolytic compared to nonpathogenic TH17 cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 20 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA525358 Series Accession: GSE127768 ID: 200127768 1757. Effect of INO80 loss on open chromatin in HepG2 cells [ATAC-seq] (Submitter supplied) Loss of INO80 from INO80 canonical bound regions decreases open chromatin. Loss of INO80 did not affect chromatin accessibility at autonomous sites. Organism: Homo sapiens Type: Other Platform: GPL16791 9 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA381707 Series Accession: GSE97410 ID: 200097410 1758. Open chromatin landscape of pancreatic endocrine progenitors (Submitter supplied) In this study, we have used ATAC-Seq to elucidate accessible genomic regions of pancreatic islet progenitor cells. During embryonic development, islet progenitors are specified from pancreatic duct cells by transient expression of Neurog3, a transcription factor necessary and sufficient for initiation of islet development. To understand the dynamics of Neurog3-dependent endocrine cell fate determination, we bred mice heterozygous or null for Neurog3 in which Neurog3 has been replaced with a green fluorescent protein (GFP) cassette. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE65nnn/GSE65794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA275075 Series Accession: GSE65794 ID: 200065794 1759. Transcriptional regulators of the amino acid response pathway in leukemia (Submitter supplied) CRISPR/Cas9-based genetic screening revealed ZBTB1 as a critical mediator of the response of T-ALL cells to asparagine deprivation. ZBTB1 regulates the transcription of ASNS, a transcriptional target of ATF4. Loss of ZBTB1 results in decreased transcription and expression of ASNS. ChIP-Sequencing reveals that both ATF4 and ZBTB1 enrich in the promoter of ASNS. This dataset contains the RNA-Seq, ChIP-Seq and ATAC-Seq data on three different cell lines (WT Jurkat cells, ZBTB1 knockout Jurkat cells and ZBTB1 knockout Jurkat cells expressing ZBTB1 cDNA) in support of these findings. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL11154 32 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608207 Series Accession: GSE145783 ID: 200145783 1760. Investigating chromatin accessibility differences in stem cells and inflammatory cells in heterotopic ossification using ATAC-Seq (Submitter supplied) Mice were injured and their response in Mesenchymal Stem Cells (MSC) were studied over a period of seven days. The injury site was either non-immobilized or immobilized. The aim of the project is to study how immobilization affects stemness and inflammatory cell response after injury by investigating chromatin accessibility differences using ATAC-Seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 3 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144324/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603371 Series Accession: GSE144324 ID: 200144324 1761. Specialized cell state and spatial compartments within the germinal center dark zone (Submitter supplied) Within germinal centers (GCs), complex and highly orchestrated molecular programs must balance proliferation, somatic hypermutation (SHM), class switch recombination (CSR) and selection to both provide effective humoral immunity and to protect against genomic instability and neoplastic transformation. In contrast to this complexity, GC B cells are canonically divided into two principal populations, dark zone (DZ) and light zone (LZ) cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL19057 32 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA552366 Series Accession: GSE133743 ID: 200133743 1762. Regulatory divergence during mouse limb evolution (Submitter supplied) Genome-wide comparative analyses of the open chromatin profiles between equivalent stages of mouse and pig limb bud development reveal the extensive functional divergence of their limb regulomes. These alterations affect evolutionary conserved regions located in the genomic landscapes of genes with essential functions during limb development. This analysis uncovers the widespread regulatory changes that appear to underlie the morphological diversion of the artiodactyl limb from the pentadactyl blueprint of tetrapods. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521487 Series Accession: GSE126292 ID: 200126292 1763. Regulatory divergence during pig limb evolution (Submitter supplied) Genome-wide comparative analyses of the open chromatin profiles between equivalent stages of mouse and pig limb bud development reveal the extensive functional divergence of their limb regulomes. These alterations affect evolutionary conserved regions located in the genomic landscapes of genes with essential functions during limb development. This analysis uncovers the widespread regulatory changes that appear to underlie the morphological diversion of the artiodactyl limb from the pentadactyl blueprint of tetrapods. Organism: Sus scrofa Type: Expression profiling by high throughput sequencing Platform: GPL20983 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521488 Series Accession: GSE126291 ID: 200126291 1764. Release of promoter-proximal paused Pol II in response to histone deactylatase inhibition (Submitter supplied) A correlation between histone acetylation and transcription has been noted for a long time, but little is known about what step(s) in the transcription cycle is influenced by acetylation. Here, we have examined the immediate transcriptional response to histone deacetylase (HDAC) inhibition, and find that release of promoter-proximal paused RNA polymerase II (Pol II) into elongation is stimulated, whereas recruitment to gene promoters is not. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL22106 30 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594989 Series Accession: GSE141871 ID: 200141871 1765. A molecular network regulating the pro-inflammatory phenotype of human memory T lymphocytes (ATAC-seq) (Submitter supplied) Understanding the mechanisms that modulate T helper lymphocyte functions is crucial to decipher normal and pathogenic immune responses in humans. To identify molecular determinants influencing the pathogenicity of T cells, we separated ex vivo-isolated primary human memory T lymphocytes based on their ability to produce high levels of inflammatory cytokines. We found that the inflammatory, cytokine-producing phenotype of memory T lymphocytes was defined by a specific core gene signature and was mechanistically regulated by the constitutive activation of the NF-kB pathway and by the expression of the transcriptional repressor BHLHE40. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554115 Series Accession: GSE134161 ID: 200134161 1766. Synthetic lethal and resistance interactions with BET bromodomain inhibitors [ATAC-Seq] (Submitter supplied) BET bromodomain inhibitors (BBDI) are promising therapeutic agents in triple-negative breast cancer (TNBC). However, not all tumors respond and acquired resistance emerges rapidly even in the responders. Using CRISPR and small molecule inhibitor screens combined with comprehensive molecular profiling of BBDI response and resistance in TNBC cell lines, we identified numerous synthetic lethal interactions with BBDIs as well as genes that when deleted confer resistance. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 16 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542340 Series Accession: GSE131026 ID: 200131026 1767. Reorganized 3D genome structures support transcriptional regulation in mouse spermatogenesis (Submitter supplied) Three-dimensional chromatin structures undergo dynamic reorganization during mammalian spermatogenesis; however, their impacts on gene regulation remain unclear. Here, we focused on understanding the structure-function regulation of meiotic chromosomes by Hi-C and other omics techniques in mouse spermatogenesis across five sequential stages. Beyond confirming recent reports regarding changes in compartmentalization and reorganization of topologically associating domains (TADs), we further demonstrated that chromatin loops are present prior to and after, but not at, the pachytene stage. more... Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 30 Samples FTP download: GEO (BW, MCOOL, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA615195 Series Accession: GSE147536 ID: 200147536 1768. Loss of CHD1 promotes chromatin dysregulation leading to heterogeneous mechanisms of resistance to hormone therapy in prostate cancer [shRNA screen] (Submitter supplied) Next generation androgen receptor (AR) signaling inhibitors have significantly improved the survival of men with metastatic castration-resistant prostate cancer (mCPRC) but resistance remains a problem. Genomic alterations at the AR locus are present in ~50% of mCRPC patients, typically in association with large numbers of copy number gains and losses across the genome. To explore the functional consequences of these copy number alterations, we screened an shRNA library targeting all genes deleted in prostate cancer (the prostate cancer deletome: 4380 shRNAs targeting 730 genes) for next generation antiandrogen resistance using a clinically-validated model of enzalutamide-sensitive, AR-driven mCRPC LNCaP/AR. more... Organism: Homo sapiens; synthetic construct Type: Other Platforms: GPL16791 GPL19604 408 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA525865 Series Accession: GSE127957 ID: 200127957 1769. Loss of CHD1 promotes chromatin dysregulation leading to heterogeneous mechanisms of resistance to hormone therapy in prostate cancer [ATAC-seq] (Submitter supplied) Next generation androgen receptor (AR) signaling inhibitors have significantly improved the survival of men with metastatic castration-resistant prostate cancer (mCPRC) but resistance remains a problem. Genomic alterations at the AR locus are present in ~50% of mCRPC patients, typically in association with large numbers of copy number gains and losses across the genome. To explore the functional consequences of these copy number alterations, we screened an shRNA library targeting all genes deleted in prostate cancer (the prostate cancer deletome: 4380 shRNAs targeting 730 genes) for next generation antiandrogen resistance using a clinically-validated model of enzalutamide-sensitive, AR-driven mCRPC LNCaP/AR. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 15 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524393 Series Accession: GSE127241 ID: 200127241 1770. Loss of CHD1 promotes chromatin dysregulation leading to heterogeneous mechanisms of resistance to hormone therapy in prostate cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: synthetic construct; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19604 GPL20301 GPL16791 453 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126918/ Series Accession: GSE126918 ID: 200126918 1771. Loss of CHD1 promotes chromatin dysregulation leading to heterogeneous mechanisms of resistance to hormone therapy in prostate cancer [RNA-seq] (Submitter supplied) Next generation androgen receptor (AR) signaling inhibitors have significantly improved the survival of men with metastatic castration-resistant prostate cancer (mCPRC) but resistance remains a problem. Genomic alterations at the AR locus are present in ~50% of mCRPC patients, typically in association with large numbers of copy number gains and losses across the genome. To explore the functional consequences of these copy number alterations, we screened an shRNA library targeting all genes deleted in prostate cancer (the prostate cancer deletome: 4380 shRNAs targeting 730 genes) for next generation antiandrogen resistance using a clinically-validated model of enzalutamide-sensitive, AR-driven mCRPC LNCaP/AR. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 30 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523728 Series Accession: GSE126917 ID: 200126917 1772. H3K79me2/3 controls enhancer promoter interactions and activation of the pan-cancer stem cell marker PROM1/CD133 in MLL-AF4 leukemia cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL16791 28 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135026/ Series Accession: GSE135026 ID: 200135026 1773. H3K79me2/3 controls enhancer promoter interactions and activation of the pan-cancer stem cell marker PROM1/CD133 in MLL-AF4 leukemia cells (ATAC-seq) (Submitter supplied) MLL gene rearrangements (MLLr) are a common cause of aggressive, incurable acute lymphoblastic leukemias (ALL) in infants and children, most of which originate in utero. The most common MLLr produces an MLL-AF4 fusion protein. MLL-AF4 promotes leukemogenesis by activating key target genes, mainly through recruitment of DOT1L and increased histone H3 lysine 79 methylation (H3K79me2/3). One key MLL-AF4 target gene is PROM1 which encodes CD133 (Prominin-1). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA557190 Series Accession: GSE135025 ID: 200135025 1774. Genome-wide ATAC-seq maps in human CD4+ T cells stimulated or unstimulated in vitro (Submitter supplied) We report the application of ATAC-seq to CD4+ T cells stimulated with anti-CD3/CD28 T activator beads for four hours in culture versus CD4+ T cells cultured in medium alone. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA514042 Series Accession: GSE124867 ID: 200124867 1775. Meis2 sets up the ground state for palatal osteogenesis in mice (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19057 GPL13112 15 Samples FTP download: GEO (BIGWIG, H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143914/ Series Accession: GSE143914 ID: 200143914 1776. Single-cell RNA-seq reveals distinct gene expression profiles underlying the cellular heterogeneity of Shox2-positve palatal cells (Submitter supplied) We use single cell RNA-sequencing to profile palatal mesenchyme cells from Shox2Cre/+;R26RmTmG at E13.5. Haploinsufficiency of MEIS2 is associated with cleft palate in humans and Meis2 inactivation leads to abnormal palate development in mice, implicating an essential role for Meis2 in palate development. However, its functional mechanisms remain unknown. In this study, we found widespread Meis2 expression in the developing palate in mice. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 1 Sample FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA602082 Series Accession: GSE143913 ID: 200143913 1777. Transcriptome of wildtype and Meis2 mutant in the developing palate (Submitter supplied) We use RNA-sequencing to profile the different expression genes in the palatal mesenchyme of wildtype and Wnt1Cre;Meis2f/f mice at E12.5. Haploinsufficiency of MEIS2 is associated with cleft palate in humans and Meis2 inactivation leads to abnormal palate development in mice, implicating an essential role for Meis2 in palate development. However, its functional mechanisms remain unknown. In this study, we found widespread Meis2 expression in the developing palate in mice. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA602083 Series Accession: GSE143912 ID: 200143912 1778. Meis2 ChIP-seq in palate (Submitter supplied) ChIP-Sequencing on Meis2-HA in E12.5 palate, to identify Meis2 binding chromatin regions and target genes. Haploinsufficiency of MEIS2 is associated with cleft palate in humans and Meis2 inactivation leads to abnormal palate development in mice, implicating an essential role for Meis2 in palate development. However, its functional mechanisms remain unknown. In this study, we found widespread Meis2 expression in the developing palate in mice. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA602084 Series Accession: GSE143911 ID: 200143911 1779. ATAC-seq of wildtype and Meis2 mutant in the developing palate (Submitter supplied) We use ATAC-seq to identify chromatin accessibility in the palatal mesenchyme of wildtype and Wnt1Cre;Meis2f/f mice at E12.5. Haploinsufficiency of MEIS2 is associated with cleft palate in humans and Meis2 inactivation leads to abnormal palate development in mice, implicating an essential role for Meis2 in palate development. However, its functional mechanisms remain unknown. In this study, we found widespread Meis2 expression in the developing palate in mice. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143910/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA602085 Series Accession: GSE143910 ID: 200143910 1780. H3K36 methyltransferase SETD2 regulates lymphoid and neural development [seq] (Submitter supplied) We study the role of loss of Setd2 and H3K36me3 in early B cell development through NGS methods including RNA, ChIP and ATAC Seq of sorted B cell populations of control and Setd2KO primary B cells from mice. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL13112 28 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA541930 Series Accession: GSE130904 ID: 200130904 1781. Quantification, dynamic visualization, and validation of bias in ATAC-seq data with ataqv (Submitter supplied) The assay for transposase-accessible chromatin using sequencing (ATAC-seq) has become the preferred method for mapping chromatin accessibility, due to its simplicity, speed, and low input material requirements. However, it can be difficult to evaluate data quality, particularly when processing many samples. Here, we present ataqv, a computational toolkit for efficiently measuring, visualizing, and comparing ATAC-seq quality control results. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 62 Samples FTP download: GEO (BED, BEDGRAPH, BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540283 Series Accession: GSE130450 ID: 200130450 1782. Zscan4 binds nucleosomal microsatellite DNA and protects mouse two-cell embryos from DNA damage (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 25 Samples FTP download: GEO (BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140621/ Series Accession: GSE140621 ID: 200140621 1783. Zscan4 binds nucleosomal microsatellite DNA and protects mouse two-cell embryos from DNA damage [ATAC-seq] (Submitter supplied) ATAC-seq from mouse ESC with stably integrated Zscan4c-GFP reporter. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 1 Sample FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590256 Series Accession: GSE140620 ID: 200140620 1784. Regulatory Sharing Between Estrogen Receptor α Bound Enhancers [ATAC-seq] (Submitter supplied) The human genome encodes an order of magnitude more gene expression enhancers than promoters, suggesting that most genes are regulated by the combined action of multiple enhancers. We have previously shown that neighboring estrogen-responsive enhancers, which are approximately 5,000 basepairs apart, exhibit complex synergistic contributions to the production of an estrogenic transcriptional response. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 16 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA613100 Series Accession: GSE147140 ID: 200147140 1785. Single cell ATAC-seq of cardiomyocytes from neonatal mouse hearts after injury (Submitter supplied) The adult mammalian heart is incapable of regeneration following injury. In contrast, the neonatal mouse heart has a transient ability to regenerate, however the molecular mechanism that mediates this regenerative response is not fully understood. Here, by single-nucleus RNA sequencing we map the transcriptome landscape of cardiomyocytes in neonatal mouse hearts at healthy, regenerative, and remodeling conditions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 1 Sample FTP download: GEO (BED, CSV, H5, MTX, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596869 Series Accession: GSE142365 ID: 200142365 1786. Loss of the neural-specific BAF subunit ACTL6B relieves repression of early response genes and causes recessive autism (Submitter supplied) Synaptic activity in neurons leads to the rapid activation of genes involved in mammalian behavior. ATP-dependent chromatin remodelers such as the BAF complex contribute to these responses and are generally thought to activate transcription. However, the mechanisms keeping such “early activation” genes silent have been a mystery. In the course of investigating Mendelian recessive autism, we identified 6 families with segregating loss of function mutations in the neuronal BAF (nBAF) subunit ACTL6B (originally named BAF53b). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 36 Samples FTP download: GEO (TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE147nnn/GSE147056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA612857 Series Accession: GSE147056 ID: 200147056 1787. Initiation of Parental Genome Reprogramming in Fertilized Oocyte by Splicing Kinase SRPK1-Catalyzed Protamine Phosphorylation (Submitter supplied) We performed ATAC-seq in mouse sperms and fertilized eggs with wild-type or P1 mutation (phosphorylation sites by SRPK1) to capture early genome reprogramming events ~5 hours post insemination. Surprisingly, we detected broadly distributed ATAC-seq reads across the mouse genome to paternal and maternal gametes formed with wild-type and single mutant sperm, and in contrast, we saw individual peaks with zygotes formed with the double mutant sperm. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562501 Series Accession: GSE136403 ID: 200136403 1788. Distinctive regulatory architectures of ubiquitous, germline and somatic genes (Submitter supplied) Chromatin accessibility in Germline, Neurons, Muscle, Hypodermis and Intestine nuclei from young adult worms. Organism: Caenorhabditis elegans Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18730 23 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592702 Series Accession: GSE141210 ID: 200141210 1789. Stabilizing heterochromatin by ZKSCAN3 safeguards hMSCs from senescence (Submitter supplied) Zinc finger protein with KRAB and SCAN domain 3 (ZKSCAN3), a transcriptional repressor, involves in multiple cellular functions. However, the functions of ZKSCAN3 in the homeostatic maintenance of human stem cells remains elusive. Here, we demonstrated that ZKSCAN3 was crucial for preventing human mesenchymal stem cells (hMSCs) from senescence in an autophagy-independent manner. Downregulation of ZKSCAN3 was observed in senescent hMSCs, and depletion of ZKSCAN3 led to premature aging in hMSCs. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL20795 32 Samples FTP download: GEO (BW, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE146nnn/GSE146387/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA611555 Series Accession: GSE146387 ID: 200146387 1790. Epigenetic profiling of EMT in pancreatic cancer cells (ATAC-seq) (Submitter supplied) Epithelial plasticity – reversible modulation of a cell’s epithelial and mesenchymal features – is associated with cancer metastasis and chemoresistance. This process is classically driven by a small cohort of transcription factors, several of which have been reported to functionally interact with epigenetic modifiers at the promoters of key epithelial and mesenchymal genes. However, the extent to which epigenetic changes underlie epithelial plasticity at the genomic level remains largely unknown. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565772 Series Accession: GSE137520 ID: 200137520 1791. Histone Modifications and Chromatin Accessibility in Endothelial Cells under Shear Stress (ATAC-seq) (Submitter supplied) This data set reveals the changes of histone modifications and chromatin accessibility in human umbilical vein endothelial cells (HUVECs) under atheroprotective pulsatile shear (PS), atheroprone oscillatory shear (OS), or with KLF4 overexpression. Using ChIP-Seq, we defined the H3K27ac and H3K4me1 enrichment under PS and OS conditions. Using ATAC-seq, we identified the chromatin accessibility under KLF4 overexpression. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527304 Series Accession: GSE128390 ID: 200128390 1792. Histone Modifications and Chromatin Accessibility in Endothelial Cells under Shear Stress (ChIP-seq) (Submitter supplied) This data set reveals the changes of histone modifications and chromatin accessibility in human umbilical vein endothelial cells (HUVECs) under atheroprotective pulsatile shear (PS), atheroprone oscillatory shear (OS), or with KLF4 overexpression. Using ChIP-Seq, we defined the H3K27ac and H3K4me1 enrichment under PS and OS conditions. Using ATAC-seq, we identified the chromatin accessibility under KLF4 overexpression. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527305 Series Accession: GSE128389 ID: 200128389 1793. Chromatin remodeling protein HELLS is critical for retinoblastoma tumor initiation and progression (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 19 Samples FTP download: GEO (BEDGRAPH, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144429/ Series Accession: GSE144429 ID: 200144429 1794. Chromatin accessibility analysis of Chx10-Cre Rb1/p107 and Chx10-Cre Rb1/p107/Hells P21 retinae (Submitter supplied) We used novel genetically engineered mouse models to investigate the role of HELLS during tumorigenesis. Loss of HELLS drastically decreased the incidence of retinoblastoma, delayed tumor progression, and increased overall survival. Retinae from Rb1/p107 DKO and Rb1/p107/Hells TKO mice at postnatal day 21 were analyzed for gene expression using ATAC-seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 7 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603599 Series Accession: GSE144428 ID: 200144428 1795. Chromatin states and transcriptome of CD8+ T cells over the course of differentiation (Submitter supplied) The goal of this study is to analyze the contribution of transposable elements (TEs) tocis-regulation in CD8+ T cells. Using a combination of NGS techniques we show that specific subfamilies of TEs are enriched, and distributed in a lineage-specific fashion in core and boundary domains of CD8+T cell enhancers.This study represents the first detailed analysis of the topology and the enhancer domain-associated putative functions of distinct TE types. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 23 Samples FTP download: GEO (BW, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA595982 Series Accession: GSE142151 ID: 200142151 1796. RNAi pathways repress reprogramming of C. elegans germ cells during heat stress (Submitter supplied) Repression of cellular reprogramming in germ cells is critical to maintaining cell fate and fertility. When germ cells mis-express somatic genes they can be directly converted into other cell types, resulting in loss of totipotency and reproductive potential. Here we show that RNAi pathways play a key role in maintaining germline gene expression and totipotency after heat stress. By examining transcriptional changes that occur in mut-16 mutants, that lack a key protein in the RNAi pathway, at elevated temperatures we found that soma-specific genes are mis-expressed in germ cells. more... Organism: Caenorhabditis elegans Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19757 36 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555613 Series Accession: GSE134573 ID: 200134573 1797. Contextual epigenetic regulation of lung adenocarcinoma by GATA6 [ATAC-Seq] (Submitter supplied) Lineage selective transcription factors (TFs) are important regulators of tumorigenesis, but their biological functions are often context dependent and their epigenetic mechanisms of action undefined. In this study, we uncover a conditional role for the endodermal and pulmonary specifying TF GATA6 during the initiation and progression of Kras mutant lung adenocarcinoma (LUAD). Inhibition of Gata6 in genetically engineered mouse models dampens the proliferation and increases the differentiation of LUAD tumors. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA512632 Series Accession: GSE124602 ID: 200124602 1798. Time course regulatory analysis based on paired expression and chromatin accessibility data (Submitter supplied) We propose a tool named TimeReg to do Time Course Regulatory Analysis from paired gene expression and chromatin accessibility data. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 GPL19057 54 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562161 Series Accession: GSE136312 ID: 200136312 1799. Epigenomic Profiling and Single_Nucleus_RNA_Seq of Adult Human Retina, Macula, and RPE/Choroid (Submitter supplied) Cis_regulatory elements (CREs) orchestrate the dynamic and diverse transcriptional programs that assemble the human central nervous system (CNS) during development and maintain its function throughout life. Genetic variation within CREs plays a central role in phenotypic variation in complex traits including the risk of developing disease. However, the cellular complexity of the human brain has largely precluded the identification of functional regulatory variation within the human CNS. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL18573 75 Samples FTP download: GEO (BW, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA573850 Series Accession: GSE137311 ID: 200137311 1800. Coordination of germ-layer lineage choice by TET1 during primed pluripotency (ATAC-seq) (Submitter supplied) Gastrulation in the early post-implantation stage mammalian embryo begins when epiblast cells ingress to form the primitive streak or develop as the embryonic ectoderm. The DNA dioxygenase Tet1 is highly expressed in the epiblast and yet continues to regulate lineage specification during gastrulation when its expression is diminished. Here, we show how Tet1 plays a pivotal role upstream of germ layer lineage bifurcation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605182 Series Accession: GSE144867 ID: 200144867 1801. The 11q13.5 immune disease risk locus contains a distal enhancer required for Treg-mediated suppression of gut inflammation [ATAC-Seq] (Submitter supplied) Much of the genetic variation underlying susceptibility to common autoimmune and allergic diseases is concentrated within protein non-coding regulatory elements termed enhancers{Enhancer; Hsniz}. It has been difficult to assign functions to a majority of enhancers that overlap immune disease-associated variants due to their distance from the genes they regulate, our lack of understanding of the cell types in which they operate and our inability to recapitulate the biology of immune-mediated diseases in vitro. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600871 Series Accession: GSE143515 ID: 200143515 1802. Chromatin architecture in hexaploid wheat is hierarchically organized around genome territories and transcription factories (Wheat_ATAC) (Submitter supplied) Polyploidization events are known to trigger extensive epigenetic and transcriptional alteration of the duplicated or merged genomes, accompanied by small- and large-scale conformational changes. The genome of modern hexaploid wheat (Triticum aestivum L.; 2n = 6x = 42) is the product of two rounds of interspecific hybridization between three closely related diploid species, resulting in the presence of distinct but highly syntenic sub-genomes (AA, BB and DD). more... Organism: Triticum aestivum Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL26889 1 Sample FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA552871 Series Accession: GSE133879 ID: 200133879 1803. RXRs are required for neonatal expansion of the serosal macrophage pool and contribute to ovarian cancer progression (Submitter supplied) Distinct macrophage populations throughout the body display highly heterogeneous transcriptional and epigenetic programs. However, the regulation of chromatin accessibility of tissue-resident macrophages is poorly understood. In this study, we generated a data set for genome-wide transposase-accessible chromatin analysis (ATAC-seq) of large peritoneal macrophages in animals with myeloid-specific double deletion of the nuclear receptors RXRa and RXRb. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531202 Series Accession: GSE129414 ID: 200129414 1804. ATAC-Seq for control and huntington's disease iPSC-derived medium spiny neuron-like cells (Submitter supplied) HD and control patient-derived induced pluripotent stem cells were used to generate medium spiny neuron-like cells. Three control in triplicate, one control in duplicate, one HD samples with CAG repeat length in typical adult onset range in triplicate and one in duplicate, and five HD samples with CAG repeat length in typical juvenile onset range in triplicate were differentiated as biological growth replicate (separate differentiations) into medium spiny neuron-like cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603902 Series Accession: GSE144518 ID: 200144518 1805. The 11q13.5 immune disease risk locus contains a distal enhancer required for Treg-mediated suppression of gut inflammation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 24 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143516/ Series Accession: GSE143516 ID: 200143516 1806. ATAC-seq comparing CD8CD38low vs CD8CD38high T cells from healthy donors and SLE (Submitter supplied) CD8CD38low vs CD8CD38high T cells from healthy donors and SLE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA592559 Series Accession: GSE141197 ID: 200141197 1807. The histone methyltransferase Setd8 alters the chromatin landscape and regulates the expression of key transcription factorsduring erythroid differentiation (Submitter supplied) SETD8 is the sole methyltransferase capable of mono-methylating histone H4, lysine 20. SETD8 is highly expressed in erythroid cells and erythroid deletion of Setd8 is embryonic lethal by embryonic day 11.5 (E11.5) due to profound anemia, suggesting it has an erythroid-specific function. To gain insights into the function of SETD8 during erythroid differentiation, we performed ATAC-seq on sorted populations of E10.5 Setd8 null and control erythroblasts. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 5 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138106/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA574631 Series Accession: GSE138106 ID: 200138106 1808. Defining CBX7-dependent chromatin architecture with rapid small-molecule inhibition (Submitter supplied) While the repressive roles of Polycomb complexes have been well-established with in vitro systems, it remains unclear how subtypes of these complexes function in living cells. Conditional alleles have enabled studies of Polycomb Repressive Complex 1 (PRC1), but the available timescales on which inducible deletion occurs is not sufficient to define its immediate regulatory targets. We have used rapid treatments with a new PRC1 inhibitor UNC4976, that functions as a chemical surrogate for H3K27me3 and engages chromodomain-containing subunit CBX7. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL16791 26 Samples FTP download: GEO (TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432965 Series Accession: GSE110139 ID: 200110139 1809. Hyperacetylated Chromatin Domains Mark Cell Type-Specific Genes and Suggest Distinct Modes of Enhancer Function (Submitter supplied) Stratification of enhancers by relative signal strength in ChIP-seq assays has resulted in the establishment of “super-enhancers” as a widespread and useful tool for identifying cell type-specific, highly expressed genes and associated pathways.  We have examined a distinct method of stratification that focuses on peak breadth, and use it to classify broad regions exhibiting histone modifications associated with gene activation as “hyperacetylated chromatin domains” (HCDs).  We find that application of this analysis to multiple datasets serves to identify genes that are both more highly expressed and more closely aligned to cell identity than “super-enhancer” analysis does.  Moreover, genetic manipulations of selected gene loci suggest that at least some HCDs harbor enhancers that work by distinct mechanisms, and in turn reveal that the “super-enhancer” concept can obscure important functions of constituent elements. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BROADPEAK, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545995 Series Accession: GSE132130 ID: 200132130 1810. Sex-specific adipose tissue imprinting of regulatory T cells (ATAC-seq) (Submitter supplied) Visceral adipose tissue (VAT) is a metabolically active endocrine organ that plays a critical role regulating organismal metabolism. Regulatory T (Treg) cells restrain VAT inflammation, and preserve insulin sensitivity and organismal metabolism. Here we report pronounced sexual dimorphism in VAT Treg cells, which were enriched specifically in males and differed strikingly from their female counterparts in phenotype, transcriptional landscape and chromatin accessibility. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA498613 Series Accession: GSE121837 ID: 200121837 1811. Dissecting the transcriptional regulation during the transition from proliferation to terminal differentiation during fly spermatogenesis (Submitter supplied) To investigate how the cell-type-specific gene expression program for spermatocyte differentiation turns on in male flies, we used RNA-seq to map transcript levels, CAGE to map transcription start sites (TSS), and ATAC-seq to map chromatin accessibility as proliferating spermatogonia transition to differentiating spermatocytes. Combining these data, we showed that the promoters that turn on when germ cells become spermatocytes lack most of the canonical core promoter motifs. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19132 GPL21306 32 Samples FTP download: GEO (BED, BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608910 Series Accession: GSE145975 ID: 200145975 1812. Pooled CRISPR screens in human intestinal organoids [ATAC-seq] (Submitter supplied) We performed CRISPR screens on both a sub-library and a genome-wide scale in human intestinal organoids to discover cancer driver genes. We investigated the Wnt and the TGFB pathway and used both WT, APC-mutant and APC-TP53-mutant organoids. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA608811 Series Accession: GSE145182 ID: 200145182 1813. ATAC-seq identifies accessible chromatin domains in gastrula stage Xenopus laevis (Submitter supplied) In the embryo, inductive cues are interpreted by competent tissues in a spatially and temporally restricted manner, and the mechanisms for the loss of responsiveness are not well understood. To test the hypothesis that loss of competence is associated with changes in chromatin accessibility, we adapted the assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) for use in Xenopus laevis to evaluate genome-wide changes in chromatin accessibility in early and late gastrula stages. more... Organism: Xenopus laevis Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL22393 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA577715 Series Accession: GSE138905 ID: 200138905 1814. Developmentally regulated requirement for the conserved transcription factor Grainy head in determining chromatin accessibility (Submitter supplied) Pioneer transcription factors initiate changes in gene expression by binding to cis-regulatory modules and promoting chromatin accessibility. It is suggested that this activity is an essential first step in priming these sites for the binding of other factors. Nonetheless, it is unclear whether pioneering activity is always required when these factors are present during development. The highly conserved, essential transcription factor Grainy head was recently identified as a pioneer factor in Drosophila larval imaginal discs, yet Grainy head is present throughout development. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21306 GPL25244 GPL17275 31 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564514 Series Accession: GSE137075 ID: 200137075 1815. Combined mutation of C/EBPa and GATA-2 induce bi-lineage acute erythroid leukemia through transformation of a neomorphic neutrophil-erythroid progenitor [ATAC-seq] (Submitter supplied) Acute erythroid leukemia (AEL) most commonly involves transformation of both the myeloid and erythroid lineages. However, the mutations that cause AEL and the nature of the transformed cell that sustains the bi-lineage leukemia phenotype remain unknown. We here show that combined bi-alleCD45.2+LKFcgRII/III+CD55- C/EBPa and GATA-2 zinc finger 1 (ZnF1) mutations are sufficient to induce bi-lineage AEL, and that the leukemia-initiating cell has a Lin–Sca-1–c-Kit+CD150–FcyRII/III+ surface phenotype, consistent with a committed myeloid progenitor. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594884 Series Accession: GSE141812 ID: 200141812 1816. cholangiocytes treated with TGFbeta (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 34 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145253/ Series Accession: GSE145253 ID: 200145253 1817. ATAC-seq of cholangiocytes treated with TGFbeta (Submitter supplied) TGF beta has profound effects on global gene expression changes. To understand the epigenetic changes associated with TGF beta stimulation, we performed ATAC-seq of cholangiocytes to understand the changes in chromatin accessibility associated with TGF beta. We also wanted to determine if H3K9ac played a role in TGF beta induced changes in chromatin accessibility. Therefore, H3K9ac inhibitor CPTH6 was used to treat cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA606518 Series Accession: GSE145252 ID: 200145252 1818. Analysis of CRE-mediated chromatin interactions by CAPTURE2.0 (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL18573 GPL19057 105 Samples FTP download: GEO (BED, BW, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139117/ Series Accession: GSE139117 ID: 200139117 1819. ATAC-seq analysis in G1E-ER4 cells during erythroid differentiation (Submitter supplied) The spatiotemporal control of 3D chromatin structure is fundamental for gene regulation, yet it remains challenging to obtain high-resolution chromatin interacting profiles at cis-regulatory elements (CREs) by chromatin conformation capture (3C)-based methods. Here, we describe the redesigned dCas9-based CAPTURE method for multiplexed, high-throughput and high-resolution analysis of locus-specific chromatin interactions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA578391 Series Accession: GSE139105 ID: 200139105 1820. BAF60a deficiency uncouples chromatin accessibility and cold sensitivity from white fat browning (Submitter supplied) Brown and beige fat share a remarkably similar transcriptional program that supports fuel oxidation and thermogenesis. The chromatin-remodeling machinery that governs genome accessibility and renders adipocytes poised for thermogenic activation remains elusive. Here we found that BAF60a, a subunit of the SWI/SNF chromatin-remodeling complexes, serves an indispensible role in cold-induced thermogenesis in brown fat. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21103 12 Samples FTP download: GEO (BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528758 Series Accession: GSE128747 ID: 200128747 1821. ATAC-seq identifies thousands of extrachromosomal circular DNA in cancers and cell lines (Submitter supplied) Extrachromosomal circular DNAs (eccDNAs) are usually somatically mosaic and a source of intercellular heterogeneity in normal and tumor cells. Because short eccDNAs are poorly chromatinized, we hypothesized that they are sequenced by tagmentation in ATAC-seq experiments, without any enrichment of circular DNA, and thus identified thousands of eccDNAs. The eccDNAs identified in cell lines were validated by inverse PCR on DNA that survives exonuclease digestion of linear DNA, and by metaphase FISH. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA607104 Series Accession: GSE145409 ID: 200145409 1822. EBF1-mutant bone marrow stroma confers long-term changes in hematopoietic stem cell potential [HSC] (Submitter supplied) Crosstalk between mesenchymal stromal cells (MSCs) and hematopoietic stem and cells (HSCs) is essential for hematopoietic homeostasis and lineage output. Here, we investigate the role of Early B-cell factor 1 (EBF1) in MSCs to support hematopoiesis. Ebf1-/- MSCs have reduced mesenchymal lineage potential. Ebf1 deletion in Cxcl12-abundant reticular (CAR) cells and PDGFRα+Sca1+CD45-CD31-Lin- (PαS) cells in the bone marrow decreases the numbers of HSPCs and myeloid cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL19057 24 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA526435 Series Accession: GSE128089 ID: 200128089 1823. Profiling chromatin accessible regions in Merkel cell carcinoma cells (Submitter supplied) Merkel cell carcinoma (MCC) is an aggressive neuroendocrine cancer of the skin, caused by either excessive UV damage or integration of the Merkel cell polyomavirus (MCV) genome. Here, we report that virally encoded MCV small T antigen (ST) establishes dependence on the LSD1 transcriptional repressor. Inhibition of LSD1 reduces growth of MCV-positive MCC and suppresses ST’s transformation capacity in vitro and in vivo. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590024 Series Accession: GSE140505 ID: 200140505 1824. LSD1-RCOR2 binding and LSD1 and BRD9 transcriptome analysis in Merkel cell carcinoma cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 66 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124864/ Series Accession: GSE124864 ID: 200124864 1825. ATAC-seq reported in "Phosphorylated Lamin A/C in the nuclear interior binds active enhancers associated with abnormal transcription in progeria" (Submitter supplied) LMNA encodes nuclear Lamin A/C that tethers lamina-associated domains (LADs) to the nuclear periphery. Mutations in LMNA cause degenerative disorders including the premature aging disorder Hutchinson-Gilford progeria, but the mechanisms are unknown. We report that Ser22-phosphorylated (pS22) Lamin A/C was localized to the nuclear interior in human fibroblasts throughout the cell cycle. pS22-Lamin A/C interacted with a subset of putative active enhancers, not LADs, at locations co-bound by the transcriptional activator c-Jun. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113352/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450862 Series Accession: GSE113352 ID: 200113352 1826. GRO-seq reported in "Phosphorylated Lamin A/C in the nuclear interior binds active enhancers associated with abnormal transcription in progeria" (Submitter supplied) LMNA encodes nuclear Lamin A/C that tethers lamina-associated domains (LADs) to the nuclear periphery. Mutations in LMNA cause degenerative disorders including the premature aging disorder Hutchinson-Gilford progeria, but the mechanisms are unknown. We report that Ser22-phosphorylated (pS22) Lamin A/C was localized to the nuclear interior in human fibroblasts throughout the cell cycle. pS22-Lamin A/C interacted with a subset of putative active enhancers, not LADs, at locations co-bound by the transcriptional activator c-Jun. more... Organism: Homo sapiens Type: Other Platform: GPL18573 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450859 Series Accession: GSE113350 ID: 200113350 1827. RNA-seq reported in "Phosphorylated Lamin A/C in the nuclear interior binds active enhancers associated with abnormal transcription in progeria" (Submitter supplied) LMNA encodes nuclear Lamin A/C that tethers lamina-associated domains (LADs) to the nuclear periphery. Mutations in LMNA cause degenerative disorders including the premature aging disorder Hutchinson-Gilford progeria, but the mechanisms are unknown. We report that Ser22-phosphorylated (pS22) Lamin A/C was localized to the nuclear interior in human fibroblasts throughout the cell cycle. pS22-Lamin A/C interacted with a subset of putative active enhancers, not LADs, at locations co-bound by the transcriptional activator c-Jun. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450854 Series Accession: GSE113343 ID: 200113343 1828. ChIP-seq reported in "Phosphorylated Lamin A/C in the nuclear interior binds active enhancers associated with abnormal transcription in progeria" (Submitter supplied) LMNA encodes nuclear Lamin A/C that tethers lamina-associated domains (LADs) to the nuclear periphery. Mutations in LMNA cause degenerative disorders including the premature aging disorder Hutchinson-Gilford progeria, but the mechanisms are unknown. We report that Ser22-phosphorylated (pS22) Lamin A/C was localized to the nuclear interior in human fibroblasts throughout the cell cycle. pS22-Lamin A/C interacted with a subset of putative active enhancers, not LADs, at locations co-bound by the transcriptional activator c-Jun. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 71 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450847 Series Accession: GSE113291 ID: 200113291 1829. Deciphering Regulatory SNPs from ATAC-seq (Submitter supplied) Background: Expression quantitative trait loci (eQTL) studies are a valuable approach for identifying genetic variants correlated with gene expression. However, identifying the causal variants is challenging due to linkage disequilibrium amongst variants in the same haplotype block. In this study, we aim to identify functional SNPs in key regulatory regions that alter transcriptional regulation and thus, potentially impact cellular function. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL20301 21 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA606502 Series Accession: GSE145245 ID: 200145245 1830. Viral integration transforms chromatin to drive oncogenesis (Submitter supplied) We report that the integration of the human papillomavirus into the host genome increases chromatin accessibility, transcription, and CTCF binding within 100 kbp of the integration site which promotes oncogenesis in some patients. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 30 Samples FTP download: GEO (NARROWPEAK, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA598867 Series Accession: GSE143026 ID: 200143026 1831. Continuous transcription initiation guarantees robust repair of all transcribed genes and regulatory regions (Submitter supplied) Inhibition of transcription caused by DNA damage-impaired RNA polymerase II (Pol II) elongation conceals a local increase in de novo transcription, slowly progressing from Transcription Start Sites (TSSs) to gene ends. Although associated with accelerated repair of Pol II-encountered lesions and limited mutagenesis, it is still unclear how this mechanism is maintained during genotoxic stress-recovery. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 15 Samples FTP download: GEO (BIGWIG, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA515483 Series Accession: GSE125181 ID: 200125181 1832. Derivation of trophoblast stem cells from naïve human pluripotent stem cells [ATAC-seq] (Submitter supplied) Naïve human pluripotent stem cells (hPSCs) provide a unique experimental platform of cell fate decisions during pre-implantation development, but their lineage potential remains incompletely characterized. As naïve hPSCs share transcriptional and epigenomic signatures with trophoblast cells, it has been proposed that the naïve state may have enhanced predisposition for differentiation along this extraembryonic lineage. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA577096 Series Accession: GSE138761 ID: 200138761 1833. DNA methylation disruption reshapes the hematopoietic differentiation landscape (Submitter supplied) Somatic mutations in genes implicated in DNA methylation (DNAme; e.g., TET2, DNMT3A and IDH2), are frequently observed in hematological malignancies, as well as in clonal hematopoiesis (CH). Yet, how these mutations disrupt the hematopoietic differentiation topology remains largely unknown. By applying complementary single-cell sequencing approaches to murine bone marrow hematopoietic stem and progenitor cells, we observe that mutations in DNAme modifiers result in significantly altered differentiation topology. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL13112 GPL11154 540 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA513958 Series Accession: GSE124822 ID: 200124822 1834. MAFG-driven astrocytes promote CNS inflammation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing 5 related Platforms 163 Samples FTP download: GEO (BEDGRAPH, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130119/ Series Accession: GSE130119 ID: 200130119 1835. Genome-wide analysis of chromatin profile in astrocytes isolated from EAE mice transduced with astrocyte-specific Mafg-targeting or non-targeting lentiviruses [ATAC-seq] (Submitter supplied) Multiple sclerosis (MS) is an autoimmune neurologic disease leading to demyelination and neurologic dysfunction controlled by both genetic and environmental factors. In addition to CNS-infiltrating immune cells, CNS-resident cells, such as astrocytes, are thought to play an important role in MS pathogenesis. However, a comprehensive understanding of the extent to which gene expression is disrupted in astrocytes is not known. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL21103 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531925 Series Accession: GSE129608 ID: 200129608 1836. Stabilization of Heterochromatin by CLOCK Counteracts hMSC Senescence and Articular Degeneration (Submitter supplied) Accumulating evidence indicates the close association between the circadian clock and the aging process. However, it is unclear whether and how the circadian clock proteins regulate stem cell aging. Here, we identified a noncanonical transcriptional activator-independent role of CLOCK, a core component of the molecular circadian clock machinery, in counteracting human mesenchymal stem cell (hMSC) senescence. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL24676 GPL21273 GPL20795 34 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE145nnn/GSE145019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605724 Series Accession: GSE145019 ID: 200145019 1837. Genetic Variations in Type 1 Diabetes Reconfigure the 3D Chromatin Organization of T Cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21626 52 Samples FTP download: GEO (BEDPE, BW, TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141853/ Series Accession: GSE141853 ID: 200141853 1838. Genetic Variations in Type 1 Diabetes Reconfigure the 3D Chromatin Organization of T Cells [ATAC-seq] (Submitter supplied) Despite overwhelming evidence supporting the role of genetics in susceptibility tocomplex diseases, such as autoimmune disorders, a fundamental unresolved questionis whether large numbers of sequence variants with small effect sizes can alter thespatial genome organization. Here, we provide the first report on the reconfiguration ofthe 3D genome due to nucleotide differences associated with type 1 diabetes, anautoimmune disorder. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 19 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA594958 Series Accession: GSE141845 ID: 200141845 1839. Assessing the ability of various genomic features to prioritize causal non-coding variants associated with diseases and traits [ATAC-seq] (Submitter supplied) Genome-wide association studies have associated thousands of genetic variants with complex traits and diseases, but pinpointing the causal variant(s) among those in tight linkage disequilibrium with each associated variant remains a major challenge. Here, we used seven experimental assays to characterize all common variants at the multiple disease-associated TNFAIP3 locus in three disease-relevant immune cell types, based on a set of features related to regulatory potential. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 9 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA563084 Series Accession: GSE136686 ID: 200136686 1840. The role of histone H3K27 acetylation for enhancer activity in embryonic stem cells (Submitter supplied) By substituting lysine 27 in histone variant H3.3 to arginine in mouse embryonic stem cells, we measured H3K27ac/H3K4me1/H3K4me3 and other acetylation modifications in H3.3K27R mutant cells, together with RNA-seq and ATAC-seq to measure the transcription activity and chromatin accessibility, respectively. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL23479 GPL24247 69 Samples FTP download: GEO (BIGWIG, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593793 Series Accession: GSE141525 ID: 200141525 1841. RNA-seq, ChIP-seq, and ATAC-seq analyses of mTECs (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18635 GPL17021 30 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144880/ Series Accession: GSE144880 ID: 200144880 1842. Genome-wide maps of chromatin state in Fezf2 or Chd4 KO mTECs (Submitter supplied) To integrate the epigenomic landscapes of chromatin accessibility regulated by Chd4 and Fezf2, we performed the assay for transposase-accessible chromatin using sequencing (ATAC-seq) analysis of mTECs from wild type (WT), Chd4 cKO and Fezf2 cKO mTECs. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA605201 Series Accession: GSE144879 ID: 200144879 1843. Dissecting the early steps of MLL induced leukaemogenic transformation using a new mouse model of AML [ATAC-seq] (Submitter supplied) Leukaemogenic mutations commonly disrupt cellular differentiation and/or enhance proliferation, thus perturbing the intricate regulatory programs that control multi-lineage differentiation and self-renewal in haematopoietic stem and progenitor cells. Translocations involving the Mll1 gene generate particularly powerful oncogenic fusion proteins, predominantly affecting infant and paediatric AML and ALL patients. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 15 Samples FTP download: GEO (BED, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141353/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593208 Series Accession: GSE141353 ID: 200141353 1844. Dissecting the early steps of MLL induced leukaemogenic transformation using a new mouse model of AML (Submitter supplied) Leukaemogenic mutations commonly disrupt cellular differentiation and/or enhance proliferation, thus perturbing the regulatory programs that control self-renewal and differentiation of stem and progenitor cells. Translocations involving the Mll1 (Kmt2a) gene generate powerful oncogenic fusion proteins, predominantly affecting infant and paediatric AML and ALL patients. The early stages of leukaemogenic transformation are typically inaccessible from human patients and conventional mouse models. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 1000 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA590993 Series Accession: GSE140807 ID: 200140807 1845. The intestinal microbiota programs DNA methylation to control tissue homeostasis and inflammation [ATAC-Seq] (Submitter supplied) Although much research has been done on the diversity of gut microbiome, little is known about the way it influences intestinal homeostasis under normal and pathogenic conditions. Epigenetic mechanisms have recently been suggested as operating at the interface between the microbiota and the intestinal epithelium cells (IECs). Using genome-wide analyses, we discovered that exposure to microbiota induced both global DNA hypomethylation and localized changes at regulatory elements, which culminates in activation of a set of “early sentinel” response genes that play a role in maintaining gut homeostasis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593552 Series Accession: GSE141458 ID: 200141458 1846. DUX-miR-344-ZMYM2-mediated activation of MERVL LTRs induces a totipotent 2C-like state (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL17021 46 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119820/ Series Accession: GSE119820 ID: 200119820 1847. DUX-miR-344-ZMYM2-mediated activation of MERVL LTRs induces a totipotent 2C-like state [ATAC-seq] (Submitter supplied) Mouse embryonic stem cells (ESCs) sporadically express preimplantation two-cell-stage (2C) transcripts, including MERVL endogenous retrovirus and Zscan4 cluster genes. Such 2C-like cells (2CLCs) can contribute to both embryonic and extraembryonic tissues when reintroduced into early embryos. We examined global nucleosome occupancy and gene expression in 2CLCs and identified miR-344 as the noncoding molecule that positively controls 2CLC potency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490369 Series Accession: GSE119817 ID: 200119817 1848. Chromatin accessibility promotes hematopoietic and leukemia stem cell activity [ATAC-seq] (Submitter supplied) In this project, we studied how the nucleosome binding protein HMGN1 affects myeloid differentiation and hematopoietic and leukemia stem cell activity. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601825 Series Accession: GSE143840 ID: 200143840 1849. Single-Cell Chromatin Accessibility Maps Reveal the Regulatory Programs Driving Early Mouse Organogenesis (Submitter supplied) During early mouse embryonic development, pluripotent cells rapidly divide and diversify to construct the developing foetus, yet the underlying regulatory programs that define the cell repertoire for each organ remain ill-defined. To delineate comprehensive chromatin landscapes of mammalian lineages during early organogenesis, we mapped chromatin accessibility in 19,453 single nuclei from mouse embryos collected at 8.25 days post-fertilisation. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 10 Samples FTP download: GEO (BED, BW, MTX, TAB, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA550440 Series Accession: GSE133244 ID: 200133244 1850. Integration of ATAC-seq and RNA-seq identifies key genes in light induced primordium formation of Sparassis latifolia (Submitter supplied) Differential expression profiling of light induction and primordium differentiation was established by integrating ATAC-seq (assay for transposase accessible chromatin with high through put sequencing) and RNA-seq technology. Key genes in light induced the primordium formation of S. latifolia were identified by bioinformatics methods. Organism: Sparassis latifolia Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL26514 GPL26515 15 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA533333 Series Accession: GSE129983 ID: 200129983 1851. Smarcad1 coordinates innate immunity-linked gene expression in the intestinal epithelium (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL23479 GPL17021 133 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127556/ Series Accession: GSE127556 ID: 200127556 1852. Smarcad1 coordinates innate immunity-linked gene expression in the intestinal epithelium [ATAC-seq] (Submitter supplied) How intestinal epithelial cells interact with the host immune system and the microbiota and how this is regulated at the gene expression level are critical questions. Smarcad1 is one of the most conserved chromatin remodelling factors, from yeast to human, with suggested functions in gene silencing, heterochromatin maintenance and genome stability. However, its role in tissue function is poorly understood. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524861 Series Accession: GSE127479 ID: 200127479 1853. Pro-neuronal activity of Myod1 due to promiscuous binding (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 48 Samples FTP download: GEO (BED, FPKM_TRACKING) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126414/ Series Accession: GSE126414 ID: 200126414 1854. Pro-neuronal activity of Myod1 due to promiscuous binding [ATAC-seq] (Submitter supplied) Basic helix-loop-helix (bHLH) pioneer transcription factors Myod1 and Ascl1 are biochemically related but produce fundamentally different outcomes when expressed in fibroblasts: Myod1 produces muscle cells and Ascl1 induces neurons. Here, we sought to investigate the molecular mechanisms explaining the differential activity. Surprisingly, we found a large overlap in the overall binding patterns of Ascl1 and Myod1 in fibroblasts, with both transcription factors accessing both neuronal and myogenic targets. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21103 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521794 Series Accession: GSE126413 ID: 200126413 1855. Zygotic pioneer factor activity of Odd-paired/Zic is necessary for establishing the Drosophila Segmentation Network (Submitter supplied) Because chromatin determines whether information encoded in DNA is accessible to transcription factors, dynamic chromatin states in development may constrain how gene regulatory networks impart embryonic pattern. To determine the interplay between chromatin states and regulatory network function, we performed ATAC seq on Drosophila embryos over the period spanning the establishment of the segmentation network, comparing wild-type and mutant embryos in which all graded maternal patterning inputs are eliminated. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17275 GPL21306 GPL19132 51 Samples FTP download: GEO (BED, BEDGRAPH, TBI, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593838 Series Accession: GSE141538 ID: 200141538 1856. Specific chromatin landscapes and transcription factors couple breast cancer subtype with metastatic relapse to lung or brain [RNAseq] (Submitter supplied) Breast cancer metastasis is the leading cause of breast cancer-related mortalities in women. Differential gene expression programs enriched in the primary tumor is able to distinguish patients that experience relapse to different organs. Epigenomic changes often underlie transcriptomic differences and give rise to stable phenotypes. However, the epigenomic differences present in organotropic metastasis remains underexplored. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 9 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA574651 Series Accession: GSE138122 ID: 200138122 1857. Specific chromatin landscapes and transcription factors couple breast cancer subtype with metastatic relapse to lung or brain [ATACseq] (Submitter supplied) Breast cancer metastasis is the leading cause of breast cancer-related mortalities in women. Differential gene expression programs enriched in the primary tumor is able to distinguish patients that experience relapse to different organs. Epigenomic changes often underlie transcriptomic differences and give rise to stable phenotypes. However, the epigenomic differences present in organotropic metastasis remains underexplored. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532391 Series Accession: GSE129646 ID: 200129646 1858. Specific chromatin landscapes and transcription factors couple breast cancer subtype with metastatic relapse to lung or brain [ChIPseq] (Submitter supplied) Breast cancer metastasis is the leading cause of breast cancer-related mortalities in women. Differential gene expression programs enriched in the primary tumor is able to distinguish patients that experience relapse to different organs. Epigenomic changes often underlie transcriptomic differences and give rise to stable phenotypes. However, the epigenomic differences present in organotropic metastasis remains underexplored. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 15 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532390 Series Accession: GSE129645 ID: 200129645 1859. Non-linear relationship between chromatin accessibility and estradiol-regulated gene expression (Submitter supplied) Chromatin accessibility is central to basal and inducible gene expression. Through ATAC-seq experiments in Estrogen Receptor-positive (ER+) breast cancer cell line MCF-7 and integrationvwith multi-omics data, we found that estradiol (E2) induced chromatin accessibility changes in the widely studied E2-regulated genes. As expected, open chromatin regions associated with E2-inducible gene expression showed enrichment of estrogen response element and those associated with E2-repressible gene expression were enriched for PBX1, PBX3, and ERE. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL18573 15 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA604072 Series Accession: GSE144580 ID: 200144580 1860. ATAC-Seq of Xenopus tail regeneration (Submitter supplied) Mammals possess limited regeneration capabilities, where the few examples of scarless healing tend to be restricted to early development. In light of this, it is of great interest to study animals that can faithfully regrow complete appendages, and uncover the biological properties that facilitate this process. Xenopus tropicalis tadpoles are excellent vertebrate models of regeneration, as they rapidly recover lost tails within just one week post amputation. more... Organism: Xenopus tropicalis Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21874 GPL24884 18 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA575367 Series Accession: GSE138303 ID: 200138303 1861. ATAC-seq analysis of Jurkat leukemia cell lines (Submitter supplied) Tissue-specific gene expression requires coordinated control of gene-proximal and distal cis-regulatory elements (CREs), yet functional analysis of putative gene-distal CREs such as enhancers remains challenging. Here we describe enhanced CRISPR/dCas9-based epigenetic editing systems, enCRISPRa and enCRISPRi, for multiplexed analysis of enhancer function in situ and in vivo. Using dual effector proteins capable of re-writing enhancer-associated chromatin modifications, we show that enCRISPRa and enCRISPRi modulate gene transcription by remodeling local epigenetic landscapes at sgRNA-targeted enhancers and associated genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA546525 Series Accession: GSE132209 ID: 200132209 1862. Hi-CoP, a simple and robust assay for detecting interactions of regulatory regions (Submitter supplied) First we developed a new, simple, and robust assay called CoP (Column Purified chromatin) for profiling of accessible regions by directly purifying fragmentized crosslinked chromatin with DNA purification column. The CoP chromatin regions by CoP-seq are consistent with the accessible regions detected by ATAC-seq and FARIE-seq. Then we integrated CoP-seq and Hi-C technique (Hi-CoP) for interactions of accessible chromatin regions which represent active cis-regulatory elements in cells. more... Organism: Mus musculus; Homo sapiens Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21273 GPL20795 GPL24676 8 Samples FTP download: GEO (BROADPEAK, BW, HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE144nnn/GSE144412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA603576 Series Accession: GSE144412 ID: 200144412 1863. 3D ATAC-PALM: Super-resolution Imaging of the Accessible Genome (Submitter supplied) Spatial genome organization is essential to direct fundamental DNA-templated biological processes (e.g. transcription, replication, and repair), but the 3D in situ nanometer-scale structure of accessible cis-regulatory DNA elements within the crowded nuclear environment remains elusive. Here, we combined the recently developed Assay for Transposase-Accessible Chromatin with visualization (ATAC-see), PALM super-resolution imaging and lattice light-sheet microscope (a method termed 3D ATAC-PALM) to selectively image and quantitatively analyze key features of the 3D accessible genome in single cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL17021 GPL21103 GPL21626 14 Samples FTP download: GEO (BW, HIC, MCOOL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521044 Series Accession: GSE126112 ID: 200126112 1864. Context-dependent gene regulation by homeodomain transcription factor complexes revealed by shape-readout deficient proteins (Submitter supplied) Eukaryotic transcription factors (TFs) form complexes with various partner proteins to recognize their genomic target sites. Yet, how the DNA sequence determines which TF complex forms at any given site is poorly understood. Here, we demonstrate that high-throughput in vitro DNA binding assays coupled with unbiased computational analysis provide unprecedented insight into how different DNA sequences select distinct compositions and configurations of homeodomain TF complexes. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platforms: GPL13304 GPL19132 33 Samples FTP download: GEO (BED, BW, HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA516909 Series Accession: GSE125604 ID: 200125604 1865. Interrogation of Enhancer Function by Enhanced CRISPR Epigenetic Editing (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18573 110 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132216/ Series Accession: GSE132216 ID: 200132216 1866. Chromatin accessibility of human monocyte-derived dendritic cells in response to infection with HIV-1 (Submitter supplied) Transcriptional programming of the innate immune response is pivotal for host protection. The transcriptional mechanisms that link pathogen sensing with innate activation remain poorly understood. During infection with HIV-1, human dendritic cells (DCs) can detect the virus through an innate sensing pathway leading to antiviral type I interferon and DC maturation. Here, we have developed an iterative experimental and computational approach to map the innate response circuitry during HIV-1 infection. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 30 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA517948 Series Accession: GSE125918 ID: 200125918 1867. Chromatin accessibility dynamics in a model of human forebrain development (Submitter supplied) In this study, we used a forebrain 3D spheroid model to map chromatin accessibility and gene expression changes throughout a dense time course spanning 20 months of neuronal and glial maturation. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 139 Samples FTP download: GEO (NARROWPEAK, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132403/ Series Accession: GSE132403 ID: 200132403 1868. Inhibition of Methyltransferase Activity of Enhancer of Zeste 2 Leads to Enhanced Lipid Accumulation and Altered Chromatin Status in Zebrafish (Submitter supplied) Recent studies indicate that exposure to environmental chemicals may increase susceptibility to developing metabolic diseases. This susceptibility might in part be caused by changes to the epigenetic landscape which consequently affect gene expression and lead to changes in lipid metabolism. These changes might be mediated by epigenetic markers such as Enhancer of Zeste2 (Ezh2), a histone H3K27 methyltransferase that has been implicated to play a role in lipid metabolismand adipogenesis. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24995 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140233/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589027 Series Accession: GSE140233 ID: 200140233 1869. Gene Network Transitions in Embryos Depend Upon Interactions between a Pioneer Transcription Factor and Core Histones [ATAC-Seq] (Submitter supplied) Gene network transitions in embryos and fate-changing contexts involve combinations of transcription factors. A subset of fate-changing transcription factors act as pioneers; they scan and target nucleosomal DNA and initiate cooperative events that can open the local chromatin. But a gap has remained in understanding how molecular interactions with the nucleosome, beyond interactions with the DNA helix, contribute to the chromatin opening phenomenon. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555197 Series Accession: GSE134464 ID: 200134464 1870. Gene Network Transitions in Embryos Depend Upon Interactions between a Pioneer Transcription Factor and Core Histones [RNA-Seq] (Submitter supplied) Gene network transitions in embryos and fate-changing contexts involve combinations of transcription factors. A subset of fate-changing transcription factors act as pioneers; they scan and target nucleosomal DNA and initiate cooperative events that can open the local chromatin. But a gap has remained in understanding how molecular interactions with the nucleosome, beyond interactions with the DNA helix, contribute to the chromatin opening phenomenon. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555196 Series Accession: GSE134463 ID: 200134463 1871. CDK-Mediator and FBXL19 cooperate in the induction of developmental genes by promoting regulatory interactions [ATAC-seq] (Submitter supplied) Appropriate developmental gene regulation relies on the capacity of gene promoters to integrate inputs from distal regulatory elements, yet how this is achieved remains poorly understood. In embryonic stem cells (ESCs), a subset of silent developmental gene promoters are primed for activation by FBXL19, a CpG island binding protein, through its capacity to recruit CDK-Mediator. How mechanistically these proteins function together to prime genes for activation during differentiation is unknown. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141919/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA595169 Series Accession: GSE141919 ID: 200141919 1872. CDK-Mediator and FBXL19 cooperate in the induction of developmental genes by promoting regulatory interactions (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL25537 GPL19057 76 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136424/ Series Accession: GSE136424 ID: 200136424 1873. Genome-wide maps of chromatin accessibility in response to Hh signaling in mouse embryonic forelimb buds (Submitter supplied) Purpose: The response to Hedgehog signaling in the limb is driven by GLI bound enhancers and the majority of Hh targets in the developing limb bud are regulated solely by the activity of GLI-repressor. Currently, we do not have a comprehensive understanding of how GLI bound enhancers respond to Hedgehog signaling. The goal of this study is to identify how GLI bound enhancers are regulated by Hedgehog signaling and specifically by GLI-repressor. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA421774 Series Accession: GSE107877 ID: 200107877 1874. Integrative genomic and epigenomic profiling reveals cell-type specific signaling networks in activated lung mononuclear phagocytes [RNA-seq/ATAC-seq] (Submitter supplied) The lung is inhabited by resident alveolar and interstitial macrophages as well as monocytic cells that survey the lung. Each cell type plays distinct functional roles under homeostatic and inflammatory conditions, but mechanisms establishing their molecular identities and functional potential remain poorly understood. Here, systematic evaluation of transcriptomes and open chromatin of alveolar macrophages (AMs), interstitial macrophages (IMs) and lung monocytes from two mouse strains enabled inference of common and cell-specific transcriptional regulators. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL19057 32 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137068/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564508 Series Accession: GSE137068 ID: 200137068 1875. Integrative genomic and epigenomic profiling reveals cell-type specific signaling networks in activated lung mononuclear phagocytes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 GPL19057 78 Samples FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136916/ Series Accession: GSE136916 ID: 200136916 1876. Gene Network Transitions in Embryos Depend Upon Interactions between a Pioneer Transcription Factor and Core Histones (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 30 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134465/ Series Accession: GSE134465 ID: 200134465 1877. Regenerating zebrafish fin epigenome is characterized by stable lineage-specific DNA methylation and dynamic chromatin accessibility (ATAC-seq) (Submitter supplied) Background: Zebrafish can faithfully regenerate injured fins through the formation of a blastema, a mass of proliferative cells that can grow and develop into the lost body part. After amputation, various cell types contribute to blastema formation, where each cell type retains fate restriction and exclusively contributes to regeneration of its own lineage. Epigenetic changes that are associated with lineage restriction during regeneration remain underexplored. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523011 Series Accession: GSE126700 ID: 200126700 1878. The chromatin remodeler Snf2h is essential for oocyte meiotic cell cycle progression (Submitter supplied) Oocytes are indispensable for mammalian life. Thus, it is important to understand how mature oocytes are generated. As a critical stage of oocytes development, meiosis has been extensively studied, yet how chromatin remodeling contributes to this process is largely unknown. Here, we demonstrate that the ATP-dependent chromatin remodeling factor Snf2h (also known as Smarca5) plays a critical role in regulating meiotic cell cycle progression. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 24 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554639 Series Accession: GSE134279 ID: 200134279 1879. Chromatin Remodeling and Immediate Early Gene Activation by SLFN11 in Response to Replication Stress [ATAC-seq_K562] (Submitter supplied) Schlafen 11 (SLFN11) has recently arisen as a novel cellular restriction factor against replication stress. Here we show that SLFN11 increases chromatin accessibility genome-wide, dominantly at promoters in response to replication stress induced by the CHK1 inhibitor prexasertib and the topoisomerase I inhibitor, camptothecin. Concomitantly SLFN11 selectively activates cellular stress response pathways by inducing the transcription of the Immediate Early Genes (IEGs) including JUN, FOS, EGR1, NFKB2 and ATF3. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL10999 6 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591709 Series Accession: GSE140934 ID: 200140934 1880. Chromatin Remodeling and Immediate Early Gene Activation by SLFN11 in Response to Replication Stress [ATAC-seq_CPTO] (Submitter supplied) Schlafen 11 (SLFN11) has recently arisen as a novel cellular restriction factor against replication stress. Here we show that SLFN11 increases chromatin accessibility genome-wide, dominantly at promoters in response to replication stress induced by the CHK1 inhibitor prexasertib and the topoisomerase I inhibitor, camptothecin. Concomitantly SLFN11 selectively activates cellular stress response pathways by inducing the transcription of the Immediate Early Genes (IEGs) including JUN, FOS, EGR1, NFKB2 and ATF3. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL10999 6 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591710 Series Accession: GSE140933 ID: 200140933 1881. Chromatin Remodeling and Immediate Early Gene Activation by SLFN11 in Response to Replication Stress [ATAC-seq_CHPTCHK1i] (Submitter supplied) Schlafen 11 (SLFN11) has recently arisen as a novel cellular restriction factor against replication stress. Here we show that SLFN11 increases chromatin accessibility genome-wide, dominantly at promoters in response to replication stress induced by the CHK1 inhibitor prexasertib and the topoisomerase I inhibitor, camptothecin. Concomitantly SLFN11 selectively activates cellular stress response pathways by inducing the transcription of the Immediate Early Genes (IEGs) including JUN, FOS, EGR1, NFKB2 and ATF3. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL10999 10 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591712 Series Accession: GSE140932 ID: 200140932 1882. Control of noncoding RNA production and histone levels by a 5’ tRNA fragment (Submitter supplied) Small RNAs derived from mature tRNAs, referred to as tRNA fragments or “tRFs”, are an emerging class of regulatory RNAs with poorly understood functions in cellular regulation. We recently identified a role for one specific tRF – 5’ tRF-Gly-GCC, or tRF-GG – in repression of genes associated with the endogenous retroelement MERVL, but the mechanistic basis for this regulation was unknown. Here, we show that tRF-GG plays a role in production of a wide variety of noncoding RNAs normally synthesized in Cajal bodies. more... Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19057 GPL18573 48 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524479 Series Accession: GSE127247 ID: 200127247 1883. Epigenetic Memory of HSC after LPS injection (ATAC-Seq) (Submitter supplied) Here we show that immune challenge can induce epigenetic memory in HSC. We show that LPS, a gram-negative bacterial component, induces changes in HSC differentiation and gene expression that returned rapidly to normal but also establish novel open chromatin regions (OCR) that persist long term. These OCR are associated with genes involved in myeloid lineage commitment and innate immunity, that become more highly expressed upon a secondary bacterial challenge and enable LPS-exposed HSCs to mount an increased myeloid differentiation and accelerated immune response. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 3 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601193 Series Accession: GSE143654 ID: 200143654 1884. Joint Profiling of Chromatin Accessibility and CAR-T Integration Site Analysis at Population and Single-cell Levels II (Submitter supplied) We report the development of a novel method called EpiVIA (https://github.com/VahediLab/epiVIA) for the joint profiling of the chromatin accessibility and lentiviral integration site analysis at the population and single-cell levels. We validate our technique in clonal cells with previously defined integration sites and further demonstrate the ability to measure lentiviral integration sites and chromatin accessibility of host and viral genomes at the single-cell resolution in CAR-T cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL21697 2 Samples FTP download: GEO (BED, MTX, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601177 Series Accession: GSE143646 ID: 200143646 1885. Joint Profiling of Chromatin Accessibility and CAR-T Integration Site Analysis at Population and Single-cell Levels I (Submitter supplied) We report the development of a novel method called EpiVIA (https://github.com/VahediLab/epiVIA) for the joint profiling of the chromatin accessibility and lentiviral integration site analysis at the population and single-cell levels. We validate our technique in clonal cells with previously defined integration sites and further demonstrate the ability to measure lentiviral integration sites and chromatin accessibility of host and viral genomes at the single-cell resolution in CAR-T cells. more... Organism: Homo sapiens Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA601178 Series Accession: GSE143645 ID: 200143645 1886. Genomic Landscape and Therapeutic Targets of Adenosquamous Carcinoma of the Pancreas [ATAC-seq] (Submitter supplied) We applied DNA content flow cytometry to a series of adenosquamous cancer of the pancreas (ASCP) tumor samples and patient derived xenografts (PDXs). We interrogated purified sorted tumor fractions from each sample with whole genome copy number variant (CNV) and whole exome sequencing (WES) analyses. These identified a variety of somatic genomic lesions targeting chromatin regulators in ASCP genomes that were superimposed on well characterized genomic lesions including mutations in KRAS and TP53, homozygous deletion of CDKN2A, and amplification of c-MYC, that are common in PDACs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA600959 Series Accession: GSE143563 ID: 200143563 1887. ATAC-seq profile of zebrafish periderm at 4-somite stage (Submitter supplied) In order to profile periderm-specific nucleosome free regions of zebrafish periderm cells at 4-somite stage, we isolated the equal number of GFP-positive cells and GFP-negative cells from Tg(krt4:GFP) embryos and perform ATAC-seq. This study revealed the landscape of zebrafish periderm-specific nucleosome free regions at 4-somite stage. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 4 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589033 Series Accession: GSE140240 ID: 200140240 1888. mRNA profile of zebrafish periderm at 4-somite stage (Submitter supplied) In order to compare the transcriptome and tissue-specific nucleosome free regions of zebrafish periderm cells at 4-somite stage, we isolated the RNA from sorted GFP-positive cells of Tg(krt4:GFP) embryos and perform low-input RNA-seq. This study revealed periderm-specific transcriptome at 4-somite stage. Moreover, comparing with ATAC-seq from the same tissue, we confirmed the correlation between gene expression and nearby chromatin accessibility. Organism: Danio rerio Type: Expression profiling by high throughput sequencing Platform: GPL14875 6 Samples FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589032 Series Accession: GSE139808 ID: 200139808 1889. Treatment-induced tumor dormancy through YAP-mediated transcriptional reprogramming of the apoptotic pathway [ChIP + ATAC] (Submitter supplied) Eradicating tumor dormancy that develops following oncogene-targeted therapy, including after epidermal growth factor receptor (EGFR) tyrosine kinase inhibitor (TKI) treatment of EGFR-mutant non-small cell lung cancer (NSCLC), is an attractive therapeutic strategy but the mechanisms governing the establishment of tumor dormancy are poorly understood. We observe that blockade of ERK1/2 reactivation following EGFR TKI treatment by combined EGFR/MEK inhibition uncovers cells that survive by entering a senescence-like dormant state, characterized by extensive epigenetic remodeling and high YAP/TEAD activity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 27 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544436 Series Accession: GSE131687 ID: 200131687 1890. Treatment-induced tumor dormancy through YAP-mediated transcriptional reprogramming of the apoptotic pathway (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL11154 68 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131604/ Series Accession: GSE131604 ID: 200131604 1891. Monocyte-derived alveolar macrophages induced by influenza infection confer long-term antibacterial protection [ATAC-seq 2] (Submitter supplied) To investigate differences in the chromatin accessibility using ATAC-seq. This was done in macrophages isolated from a busulfan chimera, using congenic markers (CD45.1 for a BM origin, and CD45.2 for a host origin) in influenza-experienced, and naive lungs - at baseline and following Pam3CSK4 stimulation Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543072 Series Accession: GSE131251 ID: 200131251 1892. Monocyte-derived alveolar macrophages induced by influenza infection confer long-term antibacterial protection (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL21103 71 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120543/ Series Accession: GSE120543 ID: 200120543 1893. Monocyte-derived alveolar macrophages induced by influenza infection confer long-term antibacterial protection [ATAC-seq] (Submitter supplied) To investigate differences in the chromatin accessibility using ATAC-seq. This was done in macrophages from a BM origin (CD45.1) and embryonic origin (CD45.2) in influenza-experienced, and naive lungs - at baseline and following Pam3CSK4 stimulation Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493459 Series Accession: GSE120540 ID: 200120540 1894. STAT3 Signaling Pathway in Keloid Pathogenesis Implicated by Preliminary Transcriptome and ATAC Analyses (Submitter supplied) Keloids are wounding-induced fibroproliferative human tumor–like skin scars of complex genetic makeup and poorly defined pathogenesis. Fibroblasts are the principal mediator of fibroproliferative disorders. To reveal dynamic epigenetic and transcriptome changes of keloid fibroblasts, a vertical study from RNA-seq and ATAC-seq analyses followed by in vivo confirmation of candidate molecule expression and subsequent functional testing was carried out using an early passage, freshly isolated keloid fibroblast cell strain and its paired normal control. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA514987 Series Accession: GSE125022 ID: 200125022 1895. Gene expression and chromatin accessibility of iLSCs vs iBlasts cells (Submitter supplied) We identified two phenotypically and functionally distinct populations in AML-iPSC lines upon hematopoietic differentiation. A cell fraction with a hematopoietic stem cell (HSC) immunophenotype exhibiting adherent growth (iLSCs =samples A) and a fraction of more differentiated cells growing in suspension (iBlasts = samples S). We used RNA-seq and ATAC-seq analyses to identify molecular differences between the two populations. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA514716 Series Accession: GSE124967 ID: 200124967 1896. Gene expression and chromatin accessibility of iLSCs vs iBlasts cells (Submitter supplied) We identified two phenotypically and functionally distinct populations in AML-iPSC lines upon hematopoietic differentiation. A cell fraction with a hematopoietic stem cell (HSC) immunophenotype exhibiting adherent growth (iLSCs =samples A) and a fraction of more differentiated cells growing in suspension (iBlasts =samples S). We used RNA-seq and ATAC-seq analyses to identify molecular differences between the two populations. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA514717 Series Accession: GSE124966 ID: 200124966 1897. Gene expression and chromatin accessibility of iLSCs vs iBlasts cells (Submitter supplied) We identified two phenotypically and functionally distinct populations in AML-iPSC lines upon hematopoietic differentiation. A cell fraction with a hematopoietic stem cell (HSC) immunophenotype exhibiting adherent growth (iLSCs=samples A) and a fraction of more differentiated cells growing in suspension (iBlasts=samples S). We used RNA-seq and ATAC-seq analyses to identify molecular differences between the two populations. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124730/ Series Accession: GSE124730 ID: 200124730 1898. An integrative view of the regulatory and transcriptional landscapes in mouse hematopoiesis [ATAC-seq] (Submitter supplied) Thousands of epigenomic datasets have been generated in the past decade, but it is difficult for researchers to effectively utilize all the data relevant to their projects. Systematic integrative analysis can help meet this need, and the VISION project was established for ValIdated Systematic IntegratiON of epigenomic data in hematopoiesis. Here, we systematically integrated extensive data recording epigenetic features and transcriptomes from many sources, including individual laboratories and consortia, to produce a comprehensive view of the regulatory landscape of differentiating hematopoietic cell types in mouse. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL19057 24 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA599439 Series Accession: GSE143270 ID: 200143270 1899. ATAC-seq profiling of influenza-specific memory CD8 T cells in the lung airways (BAL), lung interstitium (LR), lung vasculature (LV), and spleen (Submitter supplied) To examine differences in chromatin accessibility of resident memory CD8 T cells in the lung, influenza nucleoprotein-specific CD8 T cells from the airways , lung interstitium, and spleen were FACS sorted and ATAC-seq performed. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559141 Series Accession: GSE135503 ID: 200135503 1900. TGF-β and RREB1 coordinate EMT programs in development and cancer (Submitter supplied) Epithelial-to-mesenchymal transitions (EMT) play prominent roles during development, regeneration and tumor progression. EMTs are triggered by TGF-β, RAS and other signals that cooperatively induce the expression of master EMT transcription factors such as SNAIL. Here, we elucidate how the TGF-β and RAS pathways jointly trigger EMTs and tie them to broader developmental programs. We identify RAS response element binding protein 1 (RREB1) as a critical partner of TGF-β-activated SMAD transcription factors in driving SNAIL expression in pancreatic pre-malignant epithelial cells, lung adenocarcinoma cells, and embryonic stem cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 36 Samples FTP download: GEO (BEDGRAPH, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA486767 Series Accession: GSE118765 ID: 200118765 1901. Chromatin accessiblity of influenza-specific memory CD8 T cells in the lung airways, lung parenchyma, and spleen (Submitter supplied) To examine differences in chromatin accessibility of resident memory CD8 T cells in the lung, influenza nucleoprotein-specific CD8 T cells from the airways , lung parenchyma, and spleen were FACS sorted and DNA isolated for ATAC-seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 13 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484422 Series Accession: GSE118109 ID: 200118109 1902. Genomic Landscape and Therapeutic Targets of Adenosquamous Carcinoma of the Pancreas [CGH Microarray] (Submitter supplied) We applied DNA content flow cytometry to a series of adenosquamous cancer of the pancreas (ASCP) tumor samples and patient derived xenografts (PDXs). We interrogated purified sorted tumor fractions from each sample with whole genome copy number variant (CNV) and whole exome sequencing (WES) analyses. These identified a variety of somatic genomic lesions targeting chromatin regulators in ASCP genomes that were superimposed on well characterized genomic lesions including mutations in KRAS and TP53, homozygous deletion of CDKN2A, and amplification of c-MYC, that are common in PDACs. more... Organism: Homo sapiens Type: Genome variation profiling by genome tiling array Platform: GPL19387 19 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143256/ Series Accession: GSE143256 ID: 200143256 1903. Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation. (Submitter supplied) In many organisms, early embryonic development is driven by maternally provided transcription factors until the controlled onset of transcription during zygotic genome activation (ZGA). The regulation of chromatin accessibility and its relationship to gene activity during this transition remains poorly understood. Here, we generated chromatin accessibility maps for the early stages of zebrafish development spanning genome activation and the onset of lineage specification. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 26 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542075 Series Accession: GSE130944 ID: 200130944 1904. Collaborative interactions of heterogenous ribonucleoproteins contribute to transcriptional regulation of sterol metabolism (Submitter supplied) Heterogeneous nuclear ribonucleoproteins (hnRNPs) are a group of functionally versatile proteins that play critical roles in the biogenesis, cellular localization and transport of RNA. Although several lines of evidence link hnRNP abnormalities to neurodegenerative diseases and cancer their contribution to metabolic control remains unexplored. Here, we outline a role for hnRNPs in regulatory circuits controlling sterol homoeostasis. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL21493 19 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA550126 Series Accession: GSE133166 ID: 200133166 1905. Polycomb Mediated Chromatin Organization Reveals Transcriptional Silencers Required for Embryonic Development (Submitter supplied) Polycomb repressive complex 2 (PRC2), a key regulator of metazoan development, induces transcriptional silencing by organizing repressive chromatin structures. To understand PRC2 associated genome topology, we performed chromatin interaction analyses focusing on three core subunits of PRC2 in embryonic stem cells (ESCs). Our comprehensive and high-resolution PRC2 interactome reveals connectivity networks manifested by the extensive looping between distal regulatory elements (DREs) and genes controlling differentiation. more... Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 5 related Platforms 107 Samples FTP download: GEO (BIGWIG, BROADPEAK, FPKM_TRACKING, HIC, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA492929 Series Accession: GSE120393 ID: 200120393 1906. A genome-wide view of the de-differentiation of central nervous system endothelial cells in culture (Submitter supplied) Vascular endothelial cells (ECs) derived from the central nervous system (CNS) variably lose their unique barrier properties during in vitro culture, hindering the development of robust assays for BBB function, including drug permeability and extrusion assays. In previous work (Sabbagh et al., 2018) we characterized transcriptional and accessible chromatin landscapes of acutely isolated CNS ECs. In this report, we compare transcriptional and accessible chromatin landscapes of acutely isolated CNS ECs versus CNS ECs in short-term in vitro culture. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 30 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA486618 Series Accession: GSE118731 ID: 200118731 1907. The chromatin accessibility and transcriptome landscapes of Monomorium pharaonis brain (Submitter supplied) The emergence of eusociality is one of the major transitions in evolution. There have been several investigations into the reasons for shaping caste differentiation and social behavior of eusocial insects, such as ants and honeybees. However, the molecular mechanisms governing the sociality of these insects remain obscure. In this study, we profiled the transcriptome and chromatin accessibility of brain tissues in all castes: queens, males, gynes and workers in Monomorium pharaonis which is a typical caste-dependent eusocial insect. more... Organism: Monomorium pharaonis Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL27969 32 Samples FTP download: GEO (GFF3, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE143nnn/GSE143056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA598877 Series Accession: GSE143056 ID: 200143056 1908. Accessible chromatin profiles of IL-4 stimulated mouse peritoneal macrophages derived from different cellular lineages (Submitter supplied) Interleukin-4 (IL-4) activates macrophages to adopt a distinct phenotype important for tissue repair and helminth infection, but the molecular basis of chromatin remodeling in response to IL-4 stimulation is not understood. We find that IL-4 activation of terminally differentiated macrophages in mice is accompanied by cell-type-specific chromatin remodeling in regions enriched with binding motifs of the pioneer transcription factor PU.1. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 35 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477289 Series Accession: GSE116107 ID: 200116107 1909. Prospective isolation of radiation induced erythroid stress progenitors reveals unique transcriptomic and epigenetic signatures enabling increased erythroid output (Submitter supplied) Massive expansion of erythroid progenitor cells is essential for surviving anemic stress. Research towards understanding this critical process, referred to as stress-erythropoiesis, has been hampered due to lack of specific marker-combinations enabling analysis of the distinct stress-progenitor cells capable of providing radioprotection and enhanced red blood cell production. Here we present a method for precise identification and in vivo validation of progenitor cells contributing to both steady-state and stress-erythropoiesis, enabling for the first time in-depth molecular characterization of these cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL19057 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA579342 Series Accession: GSE139336 ID: 200139336 1910. Integrative QTL analysis of gene expression and chromatin accessibility identifies multi-tissue patterns of genetic regulation (ATAC-seq) (Submitter supplied) Gene transcription profiles across tissues are largely defined by the activity of regulatory elements, most of which correspond to regions of accessible chromatin. Regulatory element activity is in turn modulated by genetic variation, resulting in variable transcription rates across individuals. The interplay of these factors, however, is poorly understood. We characterize expression and chromatin state dynamics across three tissues—liver, lung, and kidney—in 47 strains of the Collaborative Cross (CC) mouse population, examining the regulation of these dynamics by expression quantitative trait loci (eQTL) and chromatin QTL (cQTL). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 141 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591382 Series Accession: GSE140871 ID: 200140871 1911. Long-term programming of CD8 T cell immunity by perinatal exposure to stress hormone (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136980/ Series Accession: GSE136980 ID: 200136980 1912. Long-term programming of CD8 T cell immunity by perinatal exposure to stress hormone [ATAC-seq] (Submitter supplied) Early life environmental exposure, particularly during perinatal period, can have a lifelong impact on organismal development and physiology. The biological rationale for this phenomenon is to promote physiological adaptation to the anticipated environment based on early life experience. However, perinatal exposure to adverse environments can also be associated with adult-onset disorders. Multiple environmental stressors induce glucocorticoids, which prompted us to investigate their role in developmental programming. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564138 Series Accession: GSE136972 ID: 200136972 1913. EGR1 is a gatekeeper of inflammatory enhancers in human macrophages (Submitter supplied) We investigated the function of EGR1 in macrophage differentiation and activation. We generated EGR1 CHIP-seq and CUT-and-RUN data during GM-CSF induced macrophage differentiation, paired with ATAC-seq. We performed RNA-seq and CHIP-seq for H3K27ac in EGR1-depleted differentiated macrophages. Finally we generated RNA-seq data in activated macrophages with EGR1 overexpression. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 42 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA561613 Series Accession: GSE136216 ID: 200136216 1914. ATAC-Seq analysis of Mouse Embryonic Fibroblasts (MEFs) to understand the role of β-actin in regulating chromatin states (Submitter supplied) β-actin is a crucial component of several chromatin remodeling complexes which control chromatin structure and accessibility. The mammalian Brahma-associated factor (BAF) is one such complex that plays essential roles in development and differentiation by regulating the chromatin state of critical genes and opposing the repressive activity of polycomb repressive complexes. While previous work has shown that β-actin loss can lead to extensive changes in gene expression and heterochromatin organization, it is not known if changes in β-actin levels can directly influence chromatin remodeling activities of BAF and polycomb proteins. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24247 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA550354 Series Accession: GSE133196 ID: 200133196 1915. Identification of tissue regulatory T cell precursors in lymphoid organs (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 162 Samples FTP download: GEO (BED, BIGWIG, H5, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130884/ Series Accession: GSE130884 ID: 200130884 1916. Identification of tissue regulatory T cell precursors in lymphoid organs [ATAC-Seq] (Submitter supplied) Regulatory T (Treg) cells maintain self-tolerance in lymphoid tissues, and specialized Treg cells accumulate and perform homeostasis and regenerative functions in non-lymphoid tissues. A common differentiation pathway of homeostasis-promoting Treg cells in non-lymphoid tissues from a putative precursor remains elusive. By using novel reporter mice and single-cell RNA-sequencing, we identified precursor stages of the IL-33 receptor ST2-expressing non-lymphoid tissue Treg population in spleen and lymph nodes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL21103 66 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA541532 Series Accession: GSE130825 ID: 200130825 1917. Gastrointestinal tissue-specific chromatin accessibility and gene expression during development (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL19057 20 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134277/ Series Accession: GSE134277 ID: 200134277 1918. Gastrointestinal tissue-specific chromatin accessibility and gene expression during development (RNA-Seq) (Submitter supplied) We used ATAC-Seq to profiling epigenomic changes and RNA-Seq to profiling gene expression changes during the embryonic development of gastrointestinal tract. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554635 Series Accession: GSE134276 ID: 200134276 1919. Gastrointestinal tissue-specific chromatin accessibility and gene expression during development (ATAC-Seq) (Submitter supplied) We used ATAC-Seq to profiling epigenomic changes and RNA-Seq to profiling gene expression changes during the embryonic development of gastrointestinal tract. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 7 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554634 Series Accession: GSE134275 ID: 200134275 1920. The loss of heterochromatin is associated with multiscale three-dimensional genome reorganization and aberrant transcription during cellular senescence (Submitter supplied) Heterochromatin remodeling is critical for various cell processes. In particular, the “loss of heterochromatin” phenotype in cellular senescence engages with the progress of aging and age-related disorders. Although biological processes of senescent cells including senescence-associated heterochromatin foci (SAHF) formation, chromosome compaction and entry into senescence have been closely associated with high-order chromatin structure. more... Organism: Homo sapiens Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20795 GPL16791 GPL24676 46 Samples FTP download: GEO (BED, BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551006 Series Accession: GSE133292 ID: 200133292 1921. Circular extrachromosomal DNA drives massive oncogene expression and chromatin accessibility (Submitter supplied) Oncogenes are commonly amplified on extrachromosomal DNA particles (ecDNA) in cancer, but our understanding of the structure of ecDNA and its impact on gene regulation is limited. We integrated ultrastructural imaging, long range-optical mapping, and computational analysis of whole genome sequencing to demonstrate unequivocally that ecDNA is circular. Pan-cancer analyses reveal that the oncogenes encoded on ecDNA are among the most highly expressed genes in the transcriptome of tumours, linking elevated copy with very high levels of transcription. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL20795 20 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506071 Series Accession: GSE131956 ID: 200131956 1922. Multi-step Epigenetic Programming of Monocytes during Infection (Submitter supplied) Monocytes play a major role in the defense against pathogens. They are rapidly mobilized to inflamed sites where they exert both proinflammatory and regulatory effector functions. It is still poorly understood how this dynamic and exceptionally plastic system is controlled at the molecular level. Herein, we evaluated the differentiation process that occurs in Ly6Chi monocytes during oral infection by T. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 14 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532592 Series Accession: GSE129724 ID: 200129724 1923. Truncated BRPF1 cooperates with Smoothened to induce adult Shh medulloblastoma (Submitter supplied) We performed ATAC-seq analysis, in order to understand the role of SmoM2 and truncated BRPF1 on the epigenetic landscape during medulloblastoma disruption Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 15 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA525143 Series Accession: GSE127733 ID: 200127733 1924. Integrative analysis of Hydra head regeneration reveals activation of distal enhancer-like elements (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Hydra vulgaris Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL25713 101 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127280/ Series Accession: GSE127280 ID: 200127280 1925. Integrative analysis of Hydra head regeneration reveals activation of distal enhancer-like elements [ATAC-seq] (Submitter supplied) The cnidarian model organism Hydra has long been studied for its remarkable ability to regenerate its head, which is controlled by a head organizer located near the hypostome. Cnidarians and bilaterians diverged about 600 millions years ago but the gene contents of species of both phyla are surprisingly similar despite divergent morphologies and functions. While little is known about the role of cis-regulatory elements in cnidarians, understanding gene regulatory mechanisms in cnidarians can potentially shed light on metazoan evolution. more... Organism: Hydra vulgaris Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25713 24 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524657 Series Accession: GSE127277 ID: 200127277 1926. Identification of cis-regulatory elements affecting pancreatic Islet maturation using chromatin accessibility variations (Submitter supplied) we were able to find several known and unforeseen key transcriptional regulators acting at cis-regulatory sites and promoters which depicted a differential accessibility and induced differential gene expression along maturation. Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18694 6 Samples FTP download: GEO (BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506207 Series Accession: GSE122747 ID: 200122747 1927. The Chromatin Remodelling Contributions of Snf2l in Cerebellar Granule Neuron Differentiation [ATAC-Seq] (Submitter supplied) Snf2l and the closely related protein, Snf2h, play a critical role in embryonic and post-natal brain development. Murine models lacking functional Snf2h or Snf2l point to complementary activities of these remodelers; Snf2h cKO mice present with a significantly reduced cerebellum, while Snf2l Ex6DEL cerebella are larger than their wild-type counterparts. Granule neuron progenitors (GNPs) isolated from Ex6DEL cerebella display delayed cell cycle exit and hindered terminal differentiation compared to wild-type littermates. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA503869 Series Accession: GSE122172 ID: 200122172 1928. ATAC-seq profiling of open chromatin with global epigenetic and transcriptional trends in two-line hybrid rice (Submitter supplied) The transcriptional regulatory switches responsible for the mechanism of fertility conversion in two-line system of hybrid rice remain unclear. Here, we employed the ATAC-seq, combined with H3K9ac and H3K4me2 and gene expression analyses, in a rice PTGMS Line Wuxiang S to delineate an integrative chromatin accessibility profiling to uncover the key new regulatory modules in response to temperature fluctuation, which can provide important hypotheses regarding the mechanisms of fertility conversion. more... Organism: Oryza sativa Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL23013 GPL13160 GPL24468 28 Samples FTP download: GEO (BED, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA464288 Series Accession: GSE114090 ID: 200114090 1929. Direct Conversion of Mouse Fibroblasts into Neural Stem Cells by Chemical Cocktail Requires Stepwise Activation of Growth Factors and Nup210 (Submitter supplied) Neural stem cells (NSCs) are valuable for both basic research and clinical application. We previously reported a chemical cocktail that could reprogram somatic cells into neural progenitor cells. However, the process of chemical induction is complex and the underlying mechanism remains largely elusive. Here, we identified a new culture condition that greatly promotes the efficiency of NSC generation directly from mouse fibroblasts based on our reported chemical cocktail. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 13 Samples FTP download: GEO (BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA423053 Series Accession: GSE108300 ID: 200108300 1930. Transcriptomic and open chromatin atlas of high-resolution anatomical regions in the rhesus macaque brain (Submitter supplied) Rhesus macaque is a prime model animal in neuroscience. A comprehensive transcriptomic and open chromatin atlas of the rhesus macaque brain is key to a deeper understanding of the brain. Here we characterize the transcriptome of 416 brain samples from 52 regions of 8 rhesus macaque brain. We identify gene modules associated with specific brain regions like the cerebral cortex, pituitary, and thalamus. more... Organism: Macaca mulatta Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24522 GPL21120 449 Samples FTP download: GEO (BW, GTF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528034 Series Accession: GSE128537 ID: 200128537 1931. Investigate the affect of CASZ1b on chromatin accessibility in SMS-CTR cells (Submitter supplied) In SMS-CTR cells, the overexpression of CASZ1b in SMS-CTR cells led to a modification of regional chromation accessibility. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521144 Series Accession: GSE126140 ID: 200126140 1932. CASZ1 directly regulates expression of myogenic genes through regional epigenetic modifications to induce muscle and rhabdomyosarcoma cell differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 6 related Platforms 57 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126147/ Series Accession: GSE126147 ID: 200126147 1933. Genome-wide MNase hypersensitivity assay unveils distinct classes of open chromatin associated with H3K27me3 and DNA methylation in Arabidopsis thaliana (Submitter supplied) We develop a technique, named MNase hypersensitivity sequencing (MH-seq), to identify genomic regions associated with open chromatin in Arabidopsis thaliana. Genomic regions enriched with MH-seq reads are referred as MNase hypersensitive sites (MHSs). MHSs overlap with the majority (~90%) of the open chromatin identified previously by DNase-seq and ATAC-seq. Surprisingly, 22% MHSs are not covered by DNase-seq or ATAC-seq reads, which are referred to “specific MHSs” (sMHSs). more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13222 2 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA597164 Series Accession: GSE142495 ID: 200142495 1934. Designing a single cell ATAC-Seq (scATAC-Seq) dataset to validate long read RNA-Seq isoforms and benchmark scATAC-Seq analysis methods (Submitter supplied) Single cell sequencing technology has been widely used for understanding the heterogeneity of complex tissue and for identifying novel cell types or cell states. Previous efforts of single cell profiling are mostly performed by measuring transcriptomes using single cell RNA sequencing (scRNA-seq). scRNA-seq is relatively well developed and around 500 analysis tools are currently available for performing different tasks. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 2 Samples FTP download: GEO (BED, CSV, MTX, TAB, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE142nnn/GSE142285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA596466 Series Accession: GSE142285 ID: 200142285 1935. Coronary disease associated gene TCF21 inhibits smooth muscle cell differentiation by blocking the myocardin-serum response factor pathway (Submitter supplied) Coronary disease associated gene TCF21 inhibits smooth muscle cell differentiation by blocking the myocardin-serum response factor pathway Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL9115 GPL16791 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510593 Series Accession: GSE124011 ID: 200124011 1936. Hippo Pathway Regulates Microarchitecture of Fibroblastic Reticular Cells in Lymph Node (Submitter supplied) To unveil the role of Hippo signaling in regulating the maintenance and integrity of FRCs in LNs. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 17 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA353070 Series Accession: GSE89742 ID: 200089742 1937. Intron 1-Mediated Regulation Of EGFR Expression In EGFR-Dependent Malignancies (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 30 Samples FTP download: GEO (BED, BW, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128275/ Series Accession: GSE128275 ID: 200128275 1938. Intron 1-Mediated Regulation Of EGFR Expression In EGFR-Dependent Malignancies [ChIP-Seq] (Submitter supplied) Here, we performed ChIP-seq and ATAC-seq and identified two novel super enhancers (SE1 and SE2) responsible for EGFR transcription present within the first intron of the EGFR gene in HNSCC and GBM. SE1 and SE2 span 37kb and 33kb respectively, contain H3K27Ac enhancer histone marks and open chromatin, functionally enhance transcription in reporter assays, interact with the EGFR promoter, and negatively impact EGFR transcript levels and anchorage-independent growth when perturbed by CRISPR/Cas9-deletion and dCas9-KRAB-silencing. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 20 Samples FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA526927 Series Accession: GSE128272 ID: 200128272 1939. Intron 1-Mediated Regulation Of EGFR Expression In EGFR-Dependent Malignancies [ATAC-Seq] (Submitter supplied) Here, we performed ChIP-seq and ATAC-seq and identified two novel super enhancers (SE1 and SE2) responsible for EGFR transcription present within the first intron of the EGFR gene in HNSCC and GBM. SE1 and SE2 span 37kb and 33kb respectively, contain H3K27Ac enhancer histone marks and open chromatin, functionally enhance transcription in reporter assays, interact with the EGFR promoter, and negatively impact EGFR transcript levels and anchorage-independent growth when perturbed by CRISPR/Cas9-deletion and dCas9-KRAB-silencing. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA526926 Series Accession: GSE128271 ID: 200128271 1940. Spatial genome re-organization between fetal and adult hematopoietic stem cells (ATAC-Seq) (Submitter supplied) Fetal hematopoietic stem cells (HSCs) undergo a developmental switch to become adult HSCs. The functional properties of the HSCs change dramatically during this switch, including their cycling behavior, hematopoietic lineage outputs and proliferation rate. The relationship between three-dimensional (3D) genome organization, epigenomic state, and transcriptome is poorly understood during this critical developmental transition. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA488455 Series Accession: GSE119198 ID: 200119198 1941. ATAC-Seq and ChIP-Seq studies in PLC-PRF cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL9052 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141966/ Series Accession: GSE141966 ID: 200141966 1942. ATAC-seq profiling of open chromatin in PLC-PRF cells (Submitter supplied) Epithelial–mesenchymal transition (EMT) is an important mechanism of metastasis and malignant progression of hepatocellular carcinoma (HCC). However, the transcriptional regulation mechanism of EMT remains poorly understood. Some transcriptional co-activators can form phase-separated condensates at super-enhancers that compartmentalize and concentrate the transcription apparatus to drive robust gene expression. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL9052 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA595430 Series Accession: GSE141964 ID: 200141964 1943. Heterodimerization of Tfap2 pioneer factors drives epigenomic remodeling during neural crest specification (Submitter supplied) Cell fate commitment is a stepwise process, in which multipotent progenitors transition through sequential regulatory states as they become fate restricted. Recent studies have highlighted the extensive transcriptomic shifts that typify cell differentiation, but our understanding of the epigenetic mechanisms underlying these changes is still superficial. To examine how chromatin states are reorganized during cell fate commitment in an in vivo system, we examined the function of pioneer factor Tfap2a at discrete stages of neural crest development. more... Organism: Gallus gallus Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19787 31 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523595 Series Accession: GSE126880 ID: 200126880 1944. Chemical reprogramming of fibroblasts to photoreceptor like cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11002 GPL19057 GPL17021 45 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138524/ Series Accession: GSE138524 ID: 200138524 1945. Chemical reprogramming of fibroblasts to photoreceptor like cells [ATAC-Seq] (Submitter supplied) Reprogramming of mouse embryonic fibroblasts (MEFs) to photorereceptor like cells by five chemicals. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA576238 Series Accession: GSE138521 ID: 200138521 1946. CRISPR screening reveals targets to reprogram long-lived effector CD8+ T cells for cancer therapy [ATAC-seq] (Submitter supplied) CD8+ T cells can be reprogrammed for better persistence and robust effector function in TME. By performing an in vivo pooled CRISPR-Cas9 mutagenesis screening of metabolism-associated factors, we identify Regnase-1 as a major negative regulator of antitumor responses, whose deficiency results in drastically increased CD8+ T cell accumulation in tumors Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 14 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564279 Series Accession: GSE137014 ID: 200137014 1947. CRISPR screening reveals targets to reprogram long-lived effector CD8+ T cells for cancer therapy. [ATAC-Seq] (Submitter supplied) CD8+ T cells can be reprogrammed for better persistence and robust effector function in TME. By performing an in vivo pooled CRISPR-Cas9 mutagenesis screening of metabolism-associated factors, we identify Regnase-1 as a major negative regulator of antitumor responses, whose deficiency results in drastically increased CD8+ T cell accumulation in tumors Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126070/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA520908 Series Accession: GSE126070 ID: 200126070 1948. CD94-CD56dim, CD94+CD56dim and CD94+CD56hi natural killer (NK) cell chromatin accessibility assay (Submitter supplied) ATAC-Seq was performed for 3 NK populations and found CD94+CD56hi NK cells exhibit unique chromatin accessible region Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505524 Series Accession: GSE122548 ID: 200122548 1949. Sphingosine 1-phosphate receptor signaling establishes AP-1 transcriptional factor gradients and permits retinal endothelial specialization (Submitter supplied) Transcriptional mechanisms that drive angiogenesis and organotypic endothelial specialization are poorly understood. Here, we show that retinal endothelial sphingosine 1-phosphate receptors (S1PRs), which restrain vascular endothelial growth factor (VEGF)-induced angiogenesis, spatially restrict expression of JunB, a member of the activator protein 1 (AP-1) family of transcription factors. Mechanistically, VEGF induces JunB expression at the sprouting vascular front while S1PR-dependent VE-cadherin assembly suppresses JunB expression in the nascent vascular network, thus creating a gradient of this transcription factor. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 22 Samples FTP download: GEO (BED, BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA593497 Series Accession: GSE141440 ID: 200141440 1950. Single cell ATAC sequencing profile of quiescent mesenchymal progenitors (Submitter supplied) After tissue injury mesenchymal progenitor subsets undergo a transient proliferative expansion, morphological transition and migration from their perivascular niche. Some of these subsets contribute enduring populations to connective tissue structures adjacent to muscle. To gain insights into gene accessibility to complement the single cell RNA seq expression data previously obtained and to uncover the lineage potential of MPs in this context, tdTomato positive cells were profiled by single cell ATAC sequencing. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 1 Sample FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554142 Series Accession: GSE134175 ID: 200134175 1951. Hic1 defines quiescent mesenchymal progenitor subpopulations with distinct functions and fates in skeletal muscle regeneration (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 55 Samples FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110038/ Series Accession: GSE110038 ID: 200110038 1952. Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation (Submitter supplied) Somatic hypermutation (SHM) introduces point mutations into immunoglobulin (Ig) genes of activated B cells to support the process of antibody affinity maturation but also causes "off-target" mutations in other parts of the genome. We have used sensitive lentiviral SHM reporter vectors and a mutationally active human B cell line to identify dozens of regions of the genome that are intrinsically susceptible to SHM ("hot" regions) and many hundreds of regions that are resistant to SHM ("cold" regions). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL18573 GPL16791 63 Samples FTP download: GEO (BW, HIC, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587064 Series Accession: GSE139810 ID: 200139810 1953. Assay for Transposase-Accessible Chromatin using sequencing of spleen memory CD4+ T cells (Submitter supplied) We performed a ATAC seq analysis of 2 biological independent splenic samples from pooled mice sorted for lcmv-specific memory CD4 T cells and 2 technical replicates from one mouse sorted for naive CD4 T cells . Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA579595 Series Accession: GSE139423 ID: 200139423 1954. Functional interactions between Mi-2β and AP1 complexes control response and recovery from barrier disruption (Submitter supplied) Keratinocytes respond to environmental signals by eliciting induction of genes that preserve skin’s integrity. Here we show that the transcriptional response to stress signaling is supported by short-lived epigenetic changes. Comparison of chromatin accessibility and transcriptional changes induced by barrier disruption or by loss of the nucleosome remodeler Mi-2β identified their striking convergence in mouse and human keratinocytes. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL13112 GPL21697 53 Samples FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA586885 Series Accession: GSE139685 ID: 200139685 1955. Activation of HOTTIP lncRNA perturbs HSC function leading to AML like disease (Submitter supplied) We found that posterior HOXA-associated HOTTIP lncRNA is aberrantly activated in MLL-rearranged AMLs and required for the posterior HOXA chromatin structure and gene expression. Knock-out of HOTTIP attenuates leukemic progressions of the transplanted humanized AML mice by blocking posterior HOXA-associated AML gene expression programs while the dCas-VP160 mediated reactivation of HOTTIP restores HOXA locus chromatin structure and HOXA9-A13 gene expression in the CBS7/9 boundary depleted AML cells. more... Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 7 related Platforms 66 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473439 Series Accession: GSE114981 ID: 200114981 1956. JMJD3 and UTX Determine Fidelity and Lineage Specification of Human Neural Progenitor Cells [ATAC-seq] (Submitter supplied) Neurogenesis entails a highly orchestrated process from pluripotent to neural cell fates including progenitors (NPCs) and various neural subtypes. However, the precise epigenetic mechanisms underlying the fate decision remain poorly understood. Here, we deleted KDM6s (JMJD3 or/and UTX), the demethylases for H3K27me3, in human embryonic stem cells (hESCs) and show that their deletion does not impede NPC generation from hESCs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133207/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA550391 Series Accession: GSE133207 ID: 200133207 1957. Eomes and Brachyury control pluripotency exit and germ-layer segregation by changing the chromatin state (Submitter supplied) We aimed to elucidate molecular mechanisms of first lineage decision in the mouse pluripotent epiblast that segregates mesoderm and endoderm (ME) from neuroectoderm (NE). By analyzing mouse embryonic stem cells (ESCs) and embryos deficient for two T-box (Tbx) transcription factors Eomes and Brachyury we demonstrate that this process is controlled by the changes in the chromatin accessibility of ME gene enhancers and activation of the target genes, but also direct repression the opposing pluripotency and NE gene programs. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 82 Samples FTP download: GEO (BED, BIGWIG, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128466/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527809 Series Accession: GSE128466 ID: 200128466 1958. JMJD3 and UTX Determine Fidelity and Lineage Specification of Human Neural Progenitor Cells [ATAC-seq] (Submitter supplied) Neurogenesis entails a highly orchestrated process from pluripotent to neural cell fates including progenitors (NPCs) and various neural subtypes. However, the precise epigenetic mechanisms underlying the fate decision remain poorly understood. Here, we deleted KDM6s (JMJD3 or/and UTX), the demethylases for H3K27me3, in human embryonic stem cells (hESCs) and show that their deletion does not impede NPC generation from hESCs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA487624 Series Accession: GSE118988 ID: 200118988 1959. Long-range single-molecule mapping of chromatin accessibility in eukaryotes (Submitter supplied) Active regulatory elements in eukaryotes are typically characterized by an open, nucleosome-depleted chromatin structure; mapping areas of open chromatin has accordingly emerged as a widely used tool in the arsenal of modern functional genomics. However, existing approaches for profiling chromatin accessibility are limited by their reliance on DNA fragmentation and short read sequencing, which leaves them unable to provide information about the state of chromatin on larger scales or reveal coordination between the chromatin state of individual distal regulatory elements. more... Organism: Saccharomyces cerevisiae Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL19756 34 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527027 Series Accession: GSE128290 ID: 200128290 1960. A conserved noncoding locus modulates random monoallelic Xist expression across a TAD boundary (Submitter supplied) Topologically associating domains (TADs) are thought to restrict the action of distal cis-regulatory elements, such as enhancers, to target gene promoters within the same TAD. Here we discover that a cis-regulatory element of Xist is located almost 200kb away from its promoter and across a TAD boundary. This element, the promoter of a noncoding RNA, Linx, opposes Xist up-regulation in cis and influences the choice of X chromosome to be inactivated. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 4 related Platforms 56 Samples FTP download: GEO (BED, BEDGRAPH, BW, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA512622 Series Accession: GSE124596 ID: 200124596 1961. Differential Roles of the Maternal and Zygotic FGF in Neural Induction in the Zebrafish Embryo (Submitter supplied) Comparison of ATAC-seq and RNA-seq datasets in wild type and SU5402 treated zebrafish embryos Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 8 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA355265 Series Accession: GSE90637 ID: 200090637 1962. Transcriptomic profiles of nonpregnant and term pregnant human myometrial tissues (Submitter supplied) The myometrium undergoes structural and functional remodeling during pregnancy. We hypothesize that myometrial genomic elements alter correspondingly in preparation for parturition. Human myometrial tissues from nonpregnant (NP) and term pregnant (TP) human subjects were subject to RNAseq, ATAC-seq and PGR ChIP-seq assays to profile transcriptome, assessible genome and PGR occupancy. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565908 Series Accession: GSE137551 ID: 200137551 1963. Profiling open chromatin regions in human myometrial tissues (Submitter supplied) The open chromatin regions of nonpregnant and term pregnant human myometrial tissues were assessed by ATAC-seq to gain insight on potential genome regulatory elements in vivo. patterns of accessible genome change between NP and TP myometrium, leading to altered enrichment of binding motifs for hormone and muscle regulators such as the progesterone receptor (PGR), Krüppel-like factors and MEF2A transcription factors. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL10999 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565904 Series Accession: GSE137549 ID: 200137549 1964. CHD8 and ELK1 cooperativity regulate cellular sensitivity to MAPK/ERK pathway (Submitter supplied) The chromodomain helicase DNA binding protein CHD8 is among the most frequently found de-novo mutations in autism. Unlike other autism-risk genes, CHD8 mutations appear to be fully penetrant. Despite this prominent disease involvement, relatively little is known about its molecular function. Based on sequence homology, CHD8 is believed to be a chromatin regulator but mechanisms for its genomic targeting and its function on chromatin are unclear. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18573 11 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591961 Series Accession: GSE141085 ID: 200141085 1965. Effect of metformin on mRNA expression, histone modifications, and chromatin accessibility in lung cancer cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL18573 10 Samples FTP download: GEO (BED, TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141060/ Series Accession: GSE141060 ID: 200141060 1966. Effect of metformin on chromatin accessibility in lung cancer cells (Submitter supplied) The DNA regions whose chromatin accessibility was significantly altered by metformin were investigated in lung cancer cells by ATAC-seq. Metformin decreased chromatin accessibility in 159 regions but increased it in 124 sites. Most regions were outside of gene promoters defined as TSS ± 3kb. The most suppressed region was 4,667bp downstream of CHAC1, and the most enhanced site was 15,111bp downstream of ERRFI1. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591909 Series Accession: GSE141059 ID: 200141059 1967. Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome [ORE-seq] (Submitter supplied) Mapping of nucleosomes, the basic DNA packaging unit in eukaryotes, is fundamental for understanding genome regulation as nucleosomes modulate DNA access by their positioning along the genome. A cell population nucleosome map requires two observables: nucleosome positions along the DNA (“Where?”) and nucleosome occupancies across the population (“In how many cells?”). All available genome-wide nucleosome mapping techniques are yield methods as they score either nucleosomal (e.g., MNase-seq, chemical cleavage-seq) or non-nucleosomal (e.g., ATAC-seq) DNA but lose track of the total DNA population for each genomic region. more... Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18085 78 Samples FTP download: GEO (BEDGRAPH, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591902 Series Accession: GSE141056 ID: 200141056 1968. Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome [ODM-seq] (Submitter supplied) Mapping of nucleosomes, the basic DNA packaging unit in eukaryotes, is fundamental for understanding genome regulation as nucleosomes modulate DNA access by their positioning along the genome. A cell population nucleosome map requires two observables: nucleosome positions along the DNA (“Where?”) and nucleosome occupancies across the population (“In how many cells?”). All available genome-wide nucleosome mapping techniques are yield methods as they score either nucleosomal (e.g., MNase-seq, chemical cleavage-seq) or non-nucleosomal (e.g., ATAC-seq) DNA but lose track of the total DNA population for each genomic region. more... Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18085 83 Samples FTP download: GEO (BEDGRAPH, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591885 Series Accession: GSE141051 ID: 200141051 1969. Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome [ODM-nanopore-seq] (Submitter supplied) Mapping of nucleosomes, the basic DNA packaging unit in eukaryotes, is fundamental for understanding genome regulation as nucleosomes modulate DNA access by their positioning along the genome. A cell population nucleosome map requires two observables: nucleosome positions along the DNA (“Where?”) and nucleosome occupancies across the population (“In how many cells?”). All available genome-wide nucleosome mapping techniques are yield methods as they score either nucleosomal (e.g., MNase-seq, chemical cleavage-seq) or non-nucleosomal (e.g., ATAC-seq) DNA but lose track of the total DNA population for each genomic region. more... Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25739 2 Samples FTP download: GEO (BEDGRAPH, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141049/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591884 Series Accession: GSE141049 ID: 200141049 1970. Absolute nucleosome occupancy map for the Saccharomyces cerevisiae genome [MNase-seq] (Submitter supplied) Mapping of nucleosomes, the basic DNA packaging unit in eukaryotes, is fundamental for understanding genome regulation as nucleosomes modulate DNA access by their positioning along the genome. A cell population nucleosome map requires two observables: nucleosome positions along the DNA (“Where?”) and nucleosome occupancies across the population (“In how many cells?”). All available genome-wide nucleosome mapping techniques are yield methods as they score either nucleosomal (e.g., MNase-seq, chemical cleavage-seq) or non-nucleosomal (e.g., ATAC-seq) DNA but lose track of the total DNA population for each genomic region. more... Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18085 1 Sample FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE141nnn/GSE141043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591853 Series Accession: GSE141043 ID: 200141043 1971. Nonpregnant and term pregnant human myometrial tissues (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL10999 GPL11154 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137552/ Series Accession: GSE137552 ID: 200137552 1972. Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages (Submitter supplied) The enteric nervous system (ENS) predominantly originates from vagal neural crest cells (VNC) that emerge from the caudal hindbrain, invade the foregut and populate the gastrointestinal tract. However, the gene regulatory network (GRN) orchestrating the early specification of VNC remains unknown. Using an EdnrB enhancer, we generated a comprehensive temporal map of the chromatin and transcriptional landscape of VNC in the avian model, revealing three VNC cell clusters (neural, neurogenic and mesenchymal), each predetermined epigenetically prior to neural tube delamination. more... Organism: Gallus gallus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19787 67 Samples FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125711/ Series Accession: GSE125711 ID: 200125711 1973. Early chromatin shaping predetermines multipotent vagal neural crest into neural, neuronal and mesenchymal lineages (Submitter supplied) The enteric nervous system (ENS) predominantly originates from vagal neural crest cells (VNC) that emerge from the caudal hindbrain, invade the foregut and populate the gastrointestinal tract. However, the gene regulatory network (GRN) orchestrating the early specification of VNC remains unknown. Using an EdnrB enhancer, we generated a comprehensive temporal map of the chromatin and transcriptional landscape of VNC in the avian model, revealing three VNC cell clusters (neural, neurogenic and mesenchymal), each predetermined epigenetically prior to neural tube delamination. more... Organism: Gallus gallus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19787 27 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA517320 Series Accession: GSE125707 ID: 200125707 1974. The Integrator complex terminates promoter-proximal transcription at protein-coding genes (Submitter supplied) The transition of RNA polymerase II (Pol II) from initiation to productive elongation is a central, regulated step in metazoan gene expression. At many genes, Pol II pauses stably in early elongation, remaining engaged with the 25-60 nucleotide-long nascent RNA for many minutes while awaiting signals for release into the gene body. However, a number of genes display highly unstable promoter Pol II, suggesting that paused polymerase terminates transcription at these promoters and releases a short, non-functional RNA. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 16 Samples FTP download: GEO (BEDGRAPH, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471515 Series Accession: GSE114467 ID: 200114467 1975. Massively Parallel Reporter Assay of human-specific substitutions in neurodevelopmental enhancers (Submitter supplied) We performed a Massively Parallel Reporter Assay (MPRA) to screen >30,000 human-specific substitutions in ChIP-seq-identified Human Gain Enhancers (HGEs) and Human Accelerated Regions (HARs), highly conserved non-coding regions that show accelerated sequence evolution in humans. After comparing human and chimpanzee reference alleles, we used a second MPRA to deconvolute individual substitutions within differentially active enhancers from substitutions in the same fragment and from other variants (human segregating variants or chimpanzee-specific variants) to isolate their specific effects on enhancer activity. Organism: Homo sapiens; Pan troglodytes Type: Other; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 18 Samples FTP download: GEO (BIGBED, BW, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA591611 Series Accession: GSE140983 ID: 200140983 1976. In vivo epigenetic CRISPR screen identifies Asf1a as an immunotherapeutic target in Kras-mutant lung adenocarcinoma (Submitter supplied) Despite substantial progress in lung cancer immunotherapy, the overall response rate in KRAS-mutant lung adenocarcinoma (ADC) patients remains low. Combining standard immunotherapy with adjuvant approaches that enhance adaptive immune responses—such as epigenetic modulation of anti-tumor immunity—is therefore an attractive strategy. To identify epigenetic regulators of tumor immunity, we constructed an epigenetic-focused sgRNA library, and performed an in vivo CRISPR screen in KrasG12D/P53-/- (KP) lung ADC model. more... Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL21103 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA576429 Series Accession: GSE138571 ID: 200138571 1977. Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle [OCT4-AID ATAC-seq] (Submitter supplied) The pioneer activity of transcription factors allows for opening of inaccessible regulatory elements and has been extensively studied in the context of cellular differentiation and reprogramming. In contrast, the function of pioneer activity in self-renewing cell divisions and across the cell cycle is poorly understood. Here we assessed the interplay between OCT4 and SOX2 in controlling chromatin accessibility of mouse embryonic stem cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 54 Samples FTP download: GEO (BED, BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556315 Series Accession: GSE134675 ID: 200134675 1978. Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle [MD-OCT4 ATAC-seq] (Submitter supplied) The pioneer activity of transcription factors allows for opening of inaccessible regulatory elements and has been extensively studied in the context of cellular differentiation and reprogramming. In contrast, the function of pioneer activity in self-renewing cell divisions and across the cell cycle is poorly understood. Here we assessed the interplay between OCT4 and SOX2 in controlling chromatin accessibility of mouse embryonic stem cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 20 Samples FTP download: GEO (BED, BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556025 Series Accession: GSE134673 ID: 200134673 1979. Dynamic regulation of chromatin accessibility by pluripotency transcription factors across the cell cycle [OCT4OFF SOX2OFF ATAC-seq] (Submitter supplied) The pioneer activity of transcription factors allows for opening of inaccessible regulatory elements and has been extensively studied in the context of cellular differentiation and reprogramming. In contrast, the function of pioneer activity in self-renewing cell divisions and across the cell cycle is poorly understood. Here we assessed the interplay between OCT4 and SOX2 in controlling chromatin accessibility of mouse embryonic stem cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BED, BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556019 Series Accession: GSE134652 ID: 200134652 1980. Genome-wide maps of chromatin accessibility governing the transition from founder cells to distinct fate-restricted cardiopharyngeal precursors (Submitter supplied) We used the assay for transposon-accessible chromatin using sequencing (ATAC-seq) on FACS-purified cells to profile chromatin accessibility during early cardiopharyngeal fate choices in Ciona. We obtained ~500 million unique reads from samples comprising cardiopharyngeal mesoderm and mesenchymal cells, as well as whole Ciona embryos and genomic DNA control. We combined ATAC-seq peaks from all the replicates to generate an atlas of 56,090 unique and non-overlapping accessible regions (accessome) covering 9.25% of the C. more... Organism: Ciona robusta Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23563 58 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA522992 Series Accession: GSE126691 ID: 200126691 1981. ATACseq of 3T3L1 cells undergoing differentiation (Submitter supplied) Confluency-arrested, undifferentiated 3T3-L1 cells were compared with DHA and Dexamethasone treated cells at 4 hrs to assess the effect of early differentiation on chromatin architecture. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484811 Series Accession: GSE118470 ID: 200118470 1982. ERG controls B-cell development by promoting Igh V-to-DJ recombination [ATAC-seq] (Submitter supplied) B-cell development is dependent on the coordinated expression and cooperation of several transcription factors. Here, we show that the transcription factor ETS Related Gene (ERG) is crucial for normal B-cell development, and that its deletion results in a substantial loss of bone marrow B-cell progenitors and peripheral B-cells as well as a skewing of splenic B-cell populations. We found that ERG-deficient B-lineage cells exhibited an early developmental block, at the pre-B cell stage, and proliferated less. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 8 Samples FTP download: GEO (BED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA529613 Series Accession: GSE128975 ID: 200128975 1983. Transcriptomic, epigenetic and functional analyses implicate neutrophil diversity in the pathogenesis of systemic lupus erythematosus (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21290 GPL16791 78 Samples FTP download: GEO (BW, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139360/ Series Accession: GSE139360 ID: 200139360 1984. Transcriptomic, epigenetic and functional analyses implicate neutrophil diversity in the pathogenesis of systemic lupus erythematosus [ATAC-seq] (Submitter supplied) Two subpopulations of low density granulocytes (LDGs) were defined in terms of different gene expression patterns, transcriptional and epigenetic features as well as functions. This study provides insights into the mechanism of immune dysregulation and the vascular damage characteristic of lupus. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA579373 Series Accession: GSE139359 ID: 200139359 1985. mSWI/SNF functional genomic characterization of SMARCB1 mutants in SMARCB1-null and heterozygous settings (Submitter supplied) Chromatin remodeling complexes regulate gene expression by shifting, evicting, and exchanging nucleosomes along the chromosomes of eukaryotic organisms. The mammalian SWI/SNF chromatin remodeling complex (mSWI/SNF or BAF) is mutated in over 20% of human cancers and loss of the SMARCB1 gene, encoding the BAF47 protein subunit, results in one of the most aggressive and lethal pediatric cancers. An accumulation of point mutations occurs at the C-terminal end of the protein, for which the functional ramifications are unknown. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL24676 102 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA514244 Series Accession: GSE124903 ID: 200124903 1986. TFIIIC binding to Alu elements controls gene expression via chromatin looping and histone acetylation (Submitter supplied) How repetitive elements, epigenetic modifications and architectural proteins interact ensuring proper genome expression remains poorly understood. Here we report regulatory mechanisms unveiling a central role of Alu elements (AEs) and RNA polymerase III transcription factor C (TFIIIC) in structurally and functionally modulating the genome via chromatin looping and histone acetylation. Upon serum deprivation, a subset of AEs pre-marked by the Activity-Dependent Neuroprotector Homeobox protein (ADNP) and located near cell cycle genes recruits TFIIIC, which alters their chromatin accessibility by direct acetylation of histone H3 lysine-18 (H3K18). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL16791 GPL18573 81 Samples FTP download: GEO (BED, BIGWIG, BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491819 Series Accession: GSE120162 ID: 200120162 1987. Chromatin accessibility profiling of mouse embryonic bodies using SFEBq differetiation methods upon transient mWdr5 deletion with or without hWDR5 rescue (Submitter supplied) This study describes time-course chromatin accessibility profiling of mouse embryonic bodies upon transient mWdr5 deletion with or without hWDR5 rescue Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL17021 22 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477502 Series Accession: GSE116153 ID: 200116153 1988. ATAC-seq and RNA-seq of cord blood cells in cytokine-rich ex vivo culture conditions following sphingolipid modulation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 60 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125214/ Series Accession: GSE125214 ID: 200125214 1989. ATAC-seq of immunophenotypic LT-HSC and ST-HSC from umblical cord blood in cytokine-rich ex vivo culture conditions following sphingolipid modulation (Submitter supplied) To investigate how ex vivo culture affects chromatin accessibility in cultured HSC, we performed the Assay for Transposase Accessible Chromatin with high-throughput sequencing (ATAC-Seq) on cLT (CD34+CD90+CD45RA-) and cST populations purified from 8 day cultured lineage depleted cord blood (lin- CB) cells treated with 3-Factor (4HPR+UM171+SR1), U+S or 4HPR as well as untreated and vehicle-treated (DMSO) control populations. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 35 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125212/ Series Accession: GSE125212 ID: 200125212 1990. NELFA is a novel regulator of the 2C-like state (Submitter supplied) Mouse embryonic stem cells (mESCs) are not homogenous; a rare subpopulation of cells can sporadically transit into a early-embryonic-like state and exhibits a gene expression program resembling that of the 2-cell (2C) embryo. We identified the maternal factor NELFA as a novel driver of the 2C-like gene expression through multiple mechanisms. We further demonstrate that the entry of mESCs into the 2C-like state is accompanied by epigenetic and metabolic reprogramming, and that perturbation of the metabolic state via a small molecule can promote this cell fate reversion in a NELFA-dependent manner, obviating the need for any genetic manipulation. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL19057 35 Samples FTP download: GEO (BW, NARROWPEAK, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA453559 Series Accession: GSE113671 ID: 200113671 1991. The hematopoietic master transcription factor PU.1 requires its interaction with the SWI/SNF remodeler to access chromatin de novo [ATAC-seq] (Submitter supplied) PU.1 is a prototype master transcription factor (TF) of hematopoietic cell differentiation with diverse roles in different lineages. Analysis of its genome-wide binding pattern across PU.1 expressing cell types revealed manifold cell type-specific binding patterns. They are not consistent with the epigenetic and chromatin constraints to PU.1 binding observed in vitro, suggesting that PU.1 requires auxiliary factors to access DNA in vivo. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 28 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528989 Series Accession: GSE128833 ID: 200128833 1992. Chromatin dynamics reveal circadian control of human in vitro islet maturation [ATAC-seq] (Submitter supplied) Stem cell-derived tissues could transform disease research and therapy, yet most methods generate functionally immature products. We investigate how human stem cells differentiate into pancreatic islets in vitro by profiling DNA methylation, chromatin accessibility, and histone modification changes. We find that enhancer potential is reset upon lineage commitment, and show how pervasive epigenetic priming steers endocrine cell fates. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 39 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589908 Series Accession: GSE140499 ID: 200140499 1993. Identification of microRNA-dependent gene regulatory networks driving human pancreatic endocrine cell differentiation [Islet ATAC-Seq] (Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNA molecules that have the ability to drive cell lineage decisions by regulating the expression of hundreds of genes. Although evidence indicates that miRNAs have roles in pancreas development and endocrine cell function, the role of miRNAs in pancreatic endocrine cell differentiation has not been systematically explored. To address this, we performed genome-wide small RNA sequencing analysis in pancreatic progenitor cells differentiated in vitro from human embryonic stem cells and endocrine cells isolated from whole human islets. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 5 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589610 Series Accession: GSE140404 ID: 200140404 1994. Identification of microRNA-dependent gene regulatory networks driving human pancreatic endocrine cell differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL16791 GPL20301 43 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115327/ Series Accession: GSE115327 ID: 200115327 1995. Identification of microRNA-dependent gene regulatory networks driving human pancreatic endocrine cell differentiation [ATAC-seq] (Submitter supplied) MicroRNAs (miRNAs) are small non-coding RNA molecules that have the ability to drive cell lineage decisions by regulating the expression of hundreds of genes. Although evidence indicates that miRNAs have roles in pancreas development and endocrine cell function, the role of miRNAs in pancreatic endocrine cell differentiation has not been systematically explored. To address this, we performed genome-wide small RNA sequencing analysis in pancreatic progenitor cells differentiated in vitro from human embryonic stem cells and endocrine cells isolated from whole human islets. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474539 Series Accession: GSE115326 ID: 200115326 1996. Epigenetic characterization of glioblastoma stem cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Methylation profiling by array; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL21145 70 Samples FTP download: GEO (BEDGRAPH, IDAT, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109399/ Series Accession: GSE109399 ID: 200109399 1997. Chromatin blueprint of glioblastoma stem cells reveals new subtypes with unique drug sensitivities [ATAC-seq] (Submitter supplied) We identified three novel chromatin-driven subtypes of glioblastoma stem cells, regulated by specific essential transcription factors and with specific drug sensitivities. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 43 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109398/ Series Accession: GSE109398 ID: 200109398 1998. Sleep-wake driven and circadian contributions to daily rhythms in gene expression and chromatin accessibility in the murine cortex (Submitter supplied) We monitored gene expression and chromatin accessibility in the cerebral cortex of 10-12 week-old male C57BL/6J mice for 24 hours before and until 48 hours after the end of a single total sleep deprivation (SD) episode. The aim was to characterise the response to SD and recovery thereafter. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 123 Samples FTP download: GEO (GTF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA589315 Series Accession: GSE140345 ID: 200140345 1999. Characterization of the transcriptional landscape of human developing hippocampus by ATAC-seq (Submitter supplied) Human hippocampus enabled further processing of higher brain functions. However, very little is known about human hippocampus development, which is largely accomplished during fetal stage. Our current study elucidates the transcriptomic profiling of the developing human fetal hippocampus using single-cell RNA-seq (scRNA-seq) and bulk atac-seq, allowing us to reconstruct the order of neurogenesis and their lineage relationships. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543066 Series Accession: GSE131256 ID: 200131256 2000. ARID1A is a critical regulator of luminal identity and therapeutic response in oestrogen receptor-positive breast cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL11154 103 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124228/ Series Accession: GSE124228 ID: 200124228 2001. ARID1A is a critical regulator of luminal identity and therapeutic response in oestrogen receptor-positive breast cancer (RNA-Seq) (Submitter supplied) Mutations in ARID1A, a subunit of the SWI/SNF chromatin remodelling complex, are the most common somatic alteration of the SWI/SNF complex across all cancers including oestrogen receptor positive (ER)+ breast cancer. We have recently reported that ARID1A inactivating mutations are present at a high frequency in advanced endocrine resistant ER+ breast cancer. In parallel, to identify mechanisms of resistance to endocrine therapy in breast cancer, we performed an epigenome CRISPR/CAS9 knockout screen that identified ARID1A as the top candidate whose loss determines resistance to the ER degrader fulvestrant. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124227/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511021 Series Accession: GSE124227 ID: 200124227 2002. ARID1A is a critical regulator of luminal identity and therapeutic response in oestrogen receptor-positive breast cancer (ATAC-Seq) (Submitter supplied) Mutations in ARID1A, a subunit of the SWI/SNF chromatin remodelling complex, are the most common somatic alteration of the SWI/SNF complex across all cancers including oestrogen receptor positive (ER)+ breast cancer. We have recently reported that ARID1A inactivating mutations are present at a high frequency in advanced endocrine resistant ER+ breast cancer. In parallel, to identify mechanisms of resistance to endocrine therapy in breast cancer, we performed an epigenome CRISPR/CAS9 knockout screen that identified ARID1A as the top candidate whose loss determines resistance to the ER degrader fulvestrant. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124224/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511016 Series Accession: GSE124224 ID: 200124224 2003. Transcription factor T-bet in B cells controls germinal centre polarization and antibody affinity maturation in response to malaria (ATAC-seq) (Submitter supplied) Despite the key role that antibodies play in protection against malaria, the cellular processes modulating the acquisition of immunity are not fully understood. Using an infection model of severe malaria, we found that GC B cells strongly upregulate the transcription factor T-bet in response to infection. Expression of T-bet in B cells was required for IgG2c switching but reduced the magnitude of GC B cell responses. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 3 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA494312 Series Accession: GSE120727 ID: 200120727 2004. Life-long epigenetic programming of cortical architecture by maternal 'Western' diet during pregnancy [ATAC-seq] (Submitter supplied) The evolution of human diets led to preferences towards polyunsaturated fatty acid (PUFA) content with ‘Western’ diets enriched in ω-6 PUFAs. Mounting evidence points to ω-6 PUFA excess limiting metabolic and cognitive processes that define longevity in humans. When chosen during pregnancy, ω-6 PUFA-enriched ‘Western’ diets can reprogram maternal bodily metabolism with maternal nutrient supply precipitating the body-wide imprinting of molecular and cellular adaptations at the level of long-range intercellular signaling networks in the unborn fetus. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 18 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE140nnn/GSE140081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA588199 Series Accession: GSE140081 ID: 200140081 2005. Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL20795 GPL20301 64 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109949/ Series Accession: GSE109949 ID: 200109949 2006. Lymphocyte-specific chromatin accessibility pre-determines glucocorticoid resistance in acute lymphoblastic leukemia [ATAC-seq] (Submitter supplied) Semi-synthetic glucocorticoids are used to treat a broad range of medical conditions including inflammation, autoimmunity, and lymphoid malignancies. While a large component of these effects can be attributed to glucocorticoid-induced apoptosis of normal and malignant lymphocyte, the molecular basis for the lymphocyte-specific apoptosis remains unclear. Moreover, the mechanisms of glucocorticoid resistance in lymphoid malignancy are poorly defined, and remain a significant barrier to cure. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432405 Series Accession: GSE109945 ID: 200109945 2007. Transcription factor Bach2 attenuates T cell receptor induced transcription to control regulatory T cell differentiation and homeostasis [ATAC-seq II] (Submitter supplied) The differentiation and homeostasis of Foxp3+ regulatory T (Treg) cells is strictly controlled by T cell receptor (TCR) signals; however, the molecular regulators of these processes are incompletely known. Here we found that Bach2 was a key regulator of Treg cell differentiation and homeostasis downstream of TCR signalling. Bach2 prevented premature differentiation of fully suppressive effector (e)Treg cells, limited IL-10 production and was required for the development of peripherally induced (p)Treg cells in the gastrointestinal tract. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 11 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564858 Series Accession: GSE137246 ID: 200137246 2008. Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [ATAC-seq] (Submitter supplied) During mammalian spermatogenesis, male germ cells undergo dramatic reorganization of chromatin, whereby 90-99% of histones are evicted and replaced by protamines. This reorganization prominently features histone acetylation to loosen chromatin structure. Given the potential role of retained histones in fertility and early embryonic development, the genomic location of retained nucleosomes is of great interest. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 34 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556585 Series Accession: GSE134825 ID: 200134825 2009. Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [MNase-Seq] (Submitter supplied) During mammalian spermatogenesis, male germ cells undergo dramatic reorganization of chromatin, whereby 90-99% of histones are evicted and replaced by protamines. This reorganization prominently features histone acetylation to loosen chromatin structure. Given the potential role of retained histones in fertility and early embryonic development, the genomic location of retained nucleosomes is of great interest. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555580 Series Accession: GSE134560 ID: 200134560 2010. Gcn5-mediated histone acetylation governs nucleosome dynamics in spermiogenesis [RNA-Seq] (Submitter supplied) During mammalian spermatogenesis, male germ cells undergo dramatic reorganization of chromatin, whereby 90-99% of histones are evicted and replaced by protamines. This reorganization prominently features histone acetylation to loosen chromatin structure. Given the potential role of retained histones in fertility and early embryonic development, the genomic location of retained nucleosomes is of great interest. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 20 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555478 Series Accession: GSE134521 ID: 200134521 2011. Nuclear exosome targeting complex core factor Zcchc8 regulates the degradation of LINE1 RNA in early embryos and embryonic stem cells (Submitter supplied) The nuclear exosome targeting (NEXT) complex is responsible for recruiting RNA exosomes to degrade specific nuclear RNAs in mammalian cells. However, its function in mammalian development remains unknown. Here, we found that the depletion of a central factor of the NEXT complex, Zcchc8, resulted in mouse developmental defects, a shortened life span and infertility. Zcchc8-deficient embryonic stem cells (ESCs) exhibited proliferation abnormalities and reduced developmental potencies. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL24247 GPL21273 GPL17021 59 Samples FTP download: GEO (BW, FPKM_TRACKING, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA525408 Series Accession: GSE127790 ID: 200127790 2012. Transcription factor Bach2 attenuates T cell receptor induced transcription to control regulatory T cell differentiation and homeostasis [ATAC-seq] (Submitter supplied) The differentiation and homeostasis of Foxp3+ regulatory T (Treg) cells is strictly controlled by T cell receptor (TCR) signals; however, the molecular regulators of these processes are incompletely known. Here we found that Bach2 was a key regulator of Treg cell differentiation and homeostasis downstream of TCR signalling. Bach2 prevented premature differentiation of fully suppressive effector (e)Treg cells, limited IL-10 production and was required for the development of peripherally induced (p)Treg cells in the gastrointestinal tract. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523371 Series Accession: GSE126806 ID: 200126806 2013. ATAC-seq profile of mouse palatal epithelium at E14.5 (Submitter supplied) To profile nucleosome free regions of moust palatal epithelium at E14.5, we performed ATAC-seq for isolated palatal epithelium and mesenchyme cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587709 Series Accession: GSE139945 ID: 200139945 2014. Transcription factor Bach2 attenuates T cell receptor induced transcription to control regulatory T cell differentiation and homeostasis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 59 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126811/ Series Accession: GSE126811 ID: 200126811 2015. Batf pioneers the reorganization of chromatin in developing effector T cells via Ets1-dependent recruitment of Ctcf (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17021 109 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123209/ Series Accession: GSE123209 ID: 200123209 2016. Batf pioneers the reorganization of chromatin in developing effector T cells via Ets1-dependent recruitment of Ctcf [ATAC-seq] (Submitter supplied) We have examined mechanisms by which Batf acts to initiate gene transcription in developing effector CD4 T cells. We find that in addition to its pioneering function, Batf controls developmentally regulated recruitment of the chromatin architectural factor, Ctcf, to promote chromatin looping that is associated with transcription of lineage-specific genes. The chromatin organizing actions of Batf are largely Ets1-dependent, which appears to be indispensable for the Batf-dependent recruitment of Ctcf. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 30 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA507804 Series Accession: GSE123206 ID: 200123206 2017. Epigenomic profiling of neuroblastoma cell lines (Submitter supplied) Understanding the aberrant transcriptional landscape of neuroblastoma is necessary to provide insight to the underlying influences of the initiation, progression and persistence of this developmental cancer. Here, we present chromatin immunoprecipitation sequencing (ChIP-Seq) data for the oncogenic transcription factors, MYCN and MYC, as well as regulatory histone marks H3K4me1, H3K4me3, H3K27Ac, and H3K27me3 in ten commonly used human neuroblastoma-derived cell line models. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL16791 93 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138315/ Series Accession: GSE138315 ID: 200138315 2018. ATAC-Seq of neuroblastoma cell lines. (Submitter supplied) ATAC-Seq of neuroblastoma cell lines. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL16791 28 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA575353 Series Accession: GSE138293 ID: 200138293 2019. Human oral epithelial cell line HIOEC (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 9 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139809/ Series Accession: GSE139809 ID: 200139809 2020. ATAC-seq profile of human oral epithelial cell line HIOEC (Submitter supplied) To compare the features of nucleosome-free regions between human oral epithelial cells and zebrafish periderm, we performed ATAC-seq using immortalized human oral epithelial cells, HIOEC, with human embry palatal mesenchyme cells, HEPM, as control. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587060 Series Accession: GSE139807 ID: 200139807 2021. H3K27Ac ChIP-seq profile of human oral epithelial cell line HIOEC (Submitter supplied) To identify the active enhancers and promoters in human oral epithelial cell line, we performed H3K27Ac ChIP-seq for HIOEC cell line. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 3 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA587061 Series Accession: GSE139805 ID: 200139805 2022. ATAC-seq from sigmoid colon (ENCSR548QCP) (Submitter supplied) ATAC-seq on human sigmoid colon For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139801/ Series Accession: GSE139801 ID: 200139801 2023. ATAC-seq from breast epithelium (ENCSR846ZBX) (Submitter supplied) ATAC-seq on human breast epithelium For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139763/ Series Accession: GSE139763 ID: 200139763 2024. ATAC-seq from right atrium auricular region (ENCSR062SVK) (Submitter supplied) ATAC-seq on human right atrium auricular region For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Project: ENCODE Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 1 Sample FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139692/ Series Accession: GSE139692 ID: 200139692 2025. Unique Transcription Factor Functions Regulate Epigenetic and Transcriptional Dynamics During Cardiac Reprogramming (Submitter supplied) To determine the molecular mechanisms by which expression of Gata4, Mef2c, and Tbx5 (GMT) induces direct reprogramming from a cardiac fibroblast toward an induced cardiomyocyte, we performed a comprehensive transcriptomic and epigenomic interrogation of the reprogramming process. Single cell RNA sequencing (GEO Series GSE133452) indicated that a reprogramming trajectory was acquired within 48 hours of GMT introduction, did not require cell division, and was limited mainly by successful expression of GMT. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL13112 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA574407 Series Accession: GSE138061 ID: 200138061 2026. Simultaneous analysis of open chromatin, promoter interactions and gene expression in stimulated T cells implicates GWAS SNPs with causal genes (Submitter supplied) Genome-wide association studies have identified genetic variation contributing to complex disease risk but assigning causal genes and mechanisms has been more challenging, as disease-associated variants are often found in distal regulatory regions with cell-type specific behaviours. Here, the simultaneous correlation of ATAC-seq, Hi-C, Capture Hi-C and nuclear RNA-seq data, in the same stimulated T-cells over 24 hours, allowed the assignment of functional enhancers to genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL16791 36 Samples FTP download: GEO (BED, CSV, NARROWPEAK, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA577101 Series Accession: GSE138767 ID: 200138767 2027. Transcriptional regulation loss disturbs the brain function and indicates detrimental clinical outcomes of Alzheimer's disease (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 47 Samples FTP download: GEO (BROADPEAK, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129041/ Series Accession: GSE129041 ID: 200129041 2028. ATAC-seq studies to open chromatin acessible region of AD brain samples (Submitter supplied) We performed the ATAC-seq to brain tissue from prefrontal cortex region in 6 AD Postmortem samples and 6 control non-dementia postmortem samples. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 12 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA529859 Series Accession: GSE129040 ID: 200129040 2029. Gene expression in Human Bronchial Epithelial Cells under Differing Oxygen Regimes (Submitter supplied) Bronchial epithelial cells line the small airways bronchii and small airways of the lungs, acting to trap and remove contaminants deposited in the lung through the process of inhalation. These cells are sensitive decreased oxygen concentrations, and are invoved in local signaling in hypoxic conditions, such as when airways are occluded. We grew cultured human bronchial epithelial cells for three passes, and treated the fourth pass under three different oxygen concentrations (21%, 15%, 2%). more... Organism: Homo sapiens Type: Expression profiling by array Platform: GPL17586 8 Samples FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121773/ Series Accession: GSE121773 ID: 200121773 2030. Transcription factor Tox2 functions to promote chromatin remodeling during T follicular helper (Tfh) cell development (ATAC-seq) (Submitter supplied) T Follicular helper (Tfh) cell is an effector CD4+ T cell subset specialized in helping B cells in germinal centers (GC) reactions. Although Bcl6 was identified as a Tfh-specific transcription factor essential for their development, the molecular mechanisms underlying Bcl6 regulation and Tfh cell commitment remain unclear. Here, we report that Tox2 transcription factor is highly expressed in Tfh cells, regulated by Bcl6 and STAT3. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562636 Series Accession: GSE136538 ID: 200136538 2031. ARID1A and the BAF complex are determinants of breast cancer treatment response [ATAC-Seq] (Submitter supplied) Global CRISPR screens provide an unparalleled, longer-term experimental approach for the identification of essential genes in drug resistance. We used an ~18,000 gene deletion screen to discover ARID1A and other BAF complex components as the most critical factors required for response to two classes of Estrogen Receptor (ER) antagonists, namely ER degraders and Selective Estrogen Receptor Modulators (SERMs). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 24 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554641 Series Accession: GSE134270 ID: 200134270 2032. Combinatorial small molecule treatment enhances the in vitro maturation of pluripotent stem cell-derived myotubes (Submitter supplied) Targeted differentiation of pluripotent stem (PS) cells into myotubes enables in vitro disease modeling of skeletal muscle diseases. Although various protocols achieve myogenic differentiation in vitro, resulting myotubes invariably display an embryonic identity. This is a major hurdle for accurately recapitulating disease phenotypes in vitro, as disease typically does not manifest in the embryonic muscle, but at more mature stages. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 12 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540694 Series Accession: GSE130592 ID: 200130592 2033. RNA-seq and ATAC-seq to study dendritic cell heterogeneity (Submitter supplied) The cDC2 subset is heterogeneous. We found the expression of T-bet delineates two distinct cDC2 subsets. Transcriptional profiling and analysis of chromatin accessibility in newly defined DC subsets identifies phenotypic specialisation and transcriptional regulators. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 22 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA534273 Series Accession: GSE130201 ID: 200130201 2034. Massively parallel characterization of regulatory dynamics during neural induction [RNA-seq II] (Submitter supplied) The molecular components governing neural induction remain largely unknown. Here, we used a suite of genomic and computational tools to comprehensively identify these components. We performed RNA-seq, ChIP-seq (H3K27ac, H3K27me3) and ATAC-seq on human embryonic stem cells (hESCs) at seven early neural differentiation time points (0-72 hours) and identified thousands of induced genes and their putative regulatory regions. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL24676 24 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556031 Series Accession: GSE134678 ID: 200134678 2035. Shox2 is necessary for lineage-specific chromatin accessibility in the anterior palate (Submitter supplied) Being a transcription factor, Shox2 binds to specific DNA sites to regulate gene expression via modulating chromatin status. To investigate the impact of Shox2 on the chromatin accessible landscape in the anterior hard palate, we subjected FACS-sorted Shox2+ cells from the palate of E14.5 Shox2Cre/+;Nkx2.5F/F;R26RmTmG and Shox2Cre/-;Nkx2.5F/F;R26RmTmG mice to ATAC-Seq analysis. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531684 Series Accession: GSE129538 ID: 200129538 2036. Massively parallel characterization of regulatory dynamics during neural induction [RNA-seq] (Submitter supplied) The molecular components governing neural induction remain largely unknown. Here, we used a suite of genomic and computational tools to comprehensively identify these components. We performed RNA-seq, ChIP-seq (H3K27ac, H3K27me3) and ATAC-seq on human embryonic stem cells (hESCs) at seven early neural differentiation time points (0-72 hours) and identified thousands of induced genes and their putative regulatory regions. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 21 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473883 Series Accession: GSE115045 ID: 200115045 2037. Massively parallel characterization of regulatory dynamics during neural induction [ATAC-seq] (Submitter supplied) The molecular components governing neural induction remain largely unknown. Here, we used a suite of genomic and computational tools to comprehensively identify these components. We performed RNA-seq, ChIP-seq (H3K27ac, H3K27me3) and ATAC-seq on human embryonic stem cells (hESCs) at seven early neural differentiation time points (0-72 hours) and identified thousands of induced genes and their putative regulatory regions. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 20 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473882 Series Accession: GSE115044 ID: 200115044 2038. Massively parallel characterization of regulatory dynamics during neural induction [ChIP-seq] (Submitter supplied) The molecular components governing neural induction remain largely unknown. Here, we used a suite of genomic and computational tools to comprehensively identify these components. We performed RNA-seq, ChIP-seq (H3K27ac, H3K27me3) and ATAC-seq on human embryonic stem cells (hESCs) at seven early neural differentiation time points (0-72 hours) and identified thousands of induced genes and their putative regulatory regions. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 42 Samples FTP download: GEO (BROADPEAK, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473881 Series Accession: GSE115043 ID: 200115043 2039. Massively parallel characterization of regulatory dynamics during neural induction [MPRA] (Submitter supplied) The molecular components governing neural induction remain largely unknown. Here, we used a suite of genomic and computational tools to comprehensively identify these components. We performed RNA-seq, ChIP-seq (H3K27ac, H3K27me3) and ATAC-seq on human embryonic stem cells (hESCs) at seven early neural differentiation time points (0-72 hours) and identified thousands of induced genes and their putative regulatory regions. more... Organism: Homo sapiens Type: Other Platform: GPL20301 3 Samples FTP download: GEO (FA, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474066 Series Accession: GSE115042 ID: 200115042 2040. Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations [ATAC-Seq] (Submitter supplied) Mammalian genomes harbor millions of noncoding elements called enhancers that quantitatively regulate gene expression, but the mechanisms that determine which enhancers regulate which genes are not well understood. Here we describe a high-throughput approach, based on CRISPR interference, RNA FISH, and flow cytometry (CRISPRi-FlowFISH), to perturb enhancers in the genome and apply it to test >3,000 potential regulatory enhancer-gene connections across multiple genomic loci. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510974 Series Accession: GSE124191 ID: 200124191 2041. Activity-by-Contact model of enhancer specificity from thousands of CRISPR perturbations (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Other Platforms: GPL16791 GPL17021 46 Samples FTP download: GEO (HIC, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118912/ Series Accession: GSE118912 ID: 200118912 2042. Sphingosine 1-phosphate-regulated transcriptomes in heterogenous arterial and lymphatic endothelium of the aorta (Submitter supplied) Despite the medical importance of G protein-coupled receptors (GPCRs), in vivo cellular heterogeneity of GPCR signaling and downstream transcriptional responses are not understood. While endothelial S1pr1 expression is ubiquitous (Kaur et al., 2017), receptor activation in vivo, as reported by GFP in S1PR1-GS mice, revealed heterogeneous signaling in multiple organs (Kono et al., 2014), including in the aorta (Galvani et al., 2015). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19057 GPL21493 25 Samples FTP download: GEO (BW, DATA, TXT, XLS, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE139nnn/GSE139065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA578178 Series Accession: GSE139065 ID: 200139065 2043. Tbx3 governs a transcriptional program to maintain atrioventricular conduction system form and function [ATAC-seq] (Submitter supplied) Rationale: The atrioventricular conduction system controls ventricular activation and is delineated by expression of Tbx3. Genome-wide association studies identified genetic variants near TBX3 associated with conduction velocities (PR interval and QRS duration), suggesting minor changes in TBX3 dose affect conduction system function. Objective: To assess whether and how Tbx3 dose reduction affects the integrity of the atrioventricular conduction system. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 1 Sample FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497394 Series Accession: GSE121464 ID: 200121464 2044. Cis-regulatory basis of sister cell type divergence in the vertebrate retina (Submitter supplied) Multicellular organisms evolved via repeated functional divergence of transcriptionally related sister cell types, but the mechanisms underlying sister cell type divergence are not well understood. Here, we study a canonical pair of sister cell types, retinal photoreceptors and bipolar cells, to identify key cis-regulatory features that mediate the transcriptomic and functional differences between them. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL17021 29 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544235 Series Accession: GSE131625 ID: 200131625 2045. The RNA helicase DDX6 regulates self-renewal and differentiation of human and mouse stem cells [ATAC-Seq] (Submitter supplied) Analysis of adult and embryonci stem cells depleted for DDX6. Results provide insight into the regulation of human stem cell self-renewal and differentiation by the RNA-binding protein DDX6 Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124071/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510652 Series Accession: GSE124071 ID: 200124071 2046. Co-Stimulation–Induced AP-1 Activity is Required for Chromatin Opening During T Cell Activation. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL20301 76 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116698/ Series Accession: GSE116698 ID: 200116698 2047. Co-Stimulation–Induced AP-1 Activity is Required for Chromatin Opening During T Cell Activation [RNA-seq] (Submitter supplied) Activation of T cells is dependent on organized and timely opening and closing of chromatin. We perform ATAC-seq (subseries 1), ChIP-seq (subseries 2), and RNA-seq (subseries 3) at 5, 24, and 60 h of T cell activation with anti-CD3 and -CD28 antibodies in human primary naïve CD4 T cells. We report that chromatin opening at early time points is established by AP-1 transcription factor and associated with transcriptional enhancer identified as risk loci for multiple immune diseases in human naïve CD4 T cells. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479885 Series Accession: GSE116697 ID: 200116697 2048. Co-Stimulation–Induced AP-1 Activity is Required for Chromatin Opening During T Cell Activation [ATAC-seq] (Submitter supplied) Activation of T cells is dependent on organized and timely opening and closing of chromatin. We perform ATAC-seq (subseries 1), ChIP-seq (subseries 2), and RNA-seq (subseries 3) at 5, 24, and 60 h of T cell activation with anti-CD3 and -CD28 antibodies in human primary naïve CD4 T cells. We report that chromatin opening at early time points is established by AP-1 transcription factor and associated with transcriptional enhancer identified as risk loci for multiple immune diseases in human naïve CD4 T cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 22 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479883 Series Accession: GSE116696 ID: 200116696 2049. Co-Stimulation–Induced AP-1 Activity is Required for Chromatin Opening During T Cell Activation [ChIP-seq] (Submitter supplied) Activation of T cells is dependent on organized and timely opening and closing of chromatin. We perform ATAC-seq (subseries 1), ChIP-seq (subseries 2), and RNA-seq (subseries 3) at 5, 24, and 60 h of T cell activation with anti-CD3 and -CD28 antibodies in human primary naïve CD4 T cells. We report that chromatin opening at early time points is established by AP-1 transcription factor and associated with transcriptional enhancer identified as risk loci for multiple immune diseases in human naïve CD4 T cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 34 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479884 Series Accession: GSE116695 ID: 200116695 2050. Genome-wide maps of chromatin accessibility before and after NR2F2 knock down using ATAC-seq. (Submitter supplied) FOXA1 and GATA3 can remodel chromatin accessibility, we further explored what effect of NR2F2 would have on chromatin properties. ATAC-seq (Assay for Transposase Accessible Chromatin with high-throughput sequencing) is widely used to map chromatin accessibility genome-wide. Thus, We perform ATAC-seq without oestrogen stimulation before and after NR2F2 depletion.Covalent modifications are a main chromatin property.To test whether NR2F2 favoured histone modification deposition on chromatin, we profiled ChIP-Seq of H3K4me1, H3K4me3, and H3K27ac following NR2F2 depletion in oestrogen-starved MCF-7 cells to gain comprehensive histone medication landscape. Organism: Homo sapiens Type: Other Platform: GPL20795 2 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548081 Series Accession: GSE132434 ID: 200132434 2051. Tumor innate immunity primed by specific interferon-stimulated endogenous retroviruses (ATAC-seq) (Submitter supplied) Mesenchymal tumor subclones secrete cytokines that promote tumorigenesis and chemoresistance, but the mechanism that underlies this phenomenon remains poorly understood. Here we identify a de-repressed subclass of endogenous retroviruses (ERVs) that engage innate immune signaling in mesenchymal cancer cells. These Stimulated 3 Prime Antisense Retroviral Coding Sequences (SPARCS) are oriented inversely in 3’UTRs of certain interferon-inducible genes, generating dsRNA following IFN exposure. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 6 Samples FTP download: GEO (NARROWPEAK, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA472897 Series Accession: GSE114864 ID: 200114864 2052. ATAC-seq profiling of in vitro FRC-conditioned, IL6-conditioned or control (anti-CD3/CD28)-stimulated CD8+ T cells (Submitter supplied) To broadly assess which pathways FRCs regulate in CD8+ T cells, we sorted CD8+ T cells for ATAC-seq following activation in whole splenocyte mixtures via soluble anti-CD3/CD28 (0.25μg/ml) for 48 hours (Stim), activated with anti-CD3/CD28 in the presence of Nos2–/– FRCs (FRC) or activated with anti-CD3/CD28 plus 100 ng/ml recombinant IL-6 (IL-6). Here we demonstrate that FRC-derived signals, including IL-6, act in concert with TCR signaling and co-stimulation to remodel chromatin and render essential transcription factor binding motifs accessible in activated CD8+ T cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA564015 Series Accession: GSE136903 ID: 200136903 2053. Next generation sequencing profiling experimental circulating tumor cells-derived metastatic variants (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL18573 122 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112856/ Series Accession: GSE112856 ID: 200112856 2054. Next generation sequencing profiling experimental circulating tumor cells-derived metastatic variants [ATAC-seq] (Submitter supplied) Hematogenous metastasis is initiated by a subset of circulating tumor cells (CTCs) shed from primary or metastatic tumors into the blood circulation. Thus, CTCs provide a unique patient biopsy resource to decipher the cellular subpopulations that initiate metastasis and their molecular properties. However, one crucial question is whether CTCs derived from patients recapitulate human metastatic disease in an animal model. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 47 Samples FTP download: GEO (BW, NARROWPEAK, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA449339 Series Accession: GSE112852 ID: 200112852 2055. A single cell atlas of human glioma (Submitter supplied) Although tumor-propagating cells can be derived from glioblastomas (GBMs)of theproneural and mesenchymal subtypes,a gliomastem-like cell (GSC) of the classical subtype has not been identified. It is unclear if mesenchymal GSCs (mGSCs) and/orproneural GSCs (pGSCs) alone are sufficient to generate the heterogeneity observed in GBM.We performed single-cell/nuclei RNA-sequencing of 28 gliomas, and single-cell ATAC-sequencing for8 cases. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL24676 28 Samples FTP download: GEO (BED, MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138794/ Series Accession: GSE138794 ID: 200138794 2056. Transcriptomics and chromatin accessibility analysis of MLL-AF9 early responses in mouse bone marrow cells (Submitter supplied) We investigated early changes of gene expressions and chromatin accessibilities in hematopoietic stem and progenitor cells (HSPCs) in response to MLL-AF9 oncogene expressions. Using RNA-Seq and ATAC-Seq, we analyzed HSPCs briefly exposed to MLL-AF9 for one or two days. Such analysis addressed the initial changes during malignant transformation, and provided insights into the primary functions of MLL-AF9 oncogene. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL21103 GPL17021 37 Samples FTP download: GEO (BW, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA498408 Series Accession: GSE121768 ID: 200121768 2057. Migratory DCs activate TGF-β to precondition naïve CD8+ T cells for tissue-resident memory fate (Submitter supplied) Epithelial resident memory T (eTRM) cells serve as sentinels in barrier tissues to guard against previously encountered pathogens. How eTRM cells are generated has important implications for efforts to elicit their formation through vaccination or prevent it in autoimmune disease. Here, we show that during immune homeostasis, the cytokine transforming growth factor β (TGF-β) epigenetically conditions resting naïve CD8+ T cells and prepares them for the formation of eTRM cells in a mouse model of skin vaccination. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133504/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551651 Series Accession: GSE133504 ID: 200133504 2058. Reconstruction of the global neural crest gene regulatory network in vivo (Submitter supplied) Precise control of developmental processes is encoded in the genome in the form of gene regulatory networks (GRNs). Such multi-factorial systems are difficult to decode in vertebrates owing to their complex gene hierarchies and transient dynamic molecular interactions. Here we present a genome-wide in vivo reconstruction of the GRN underlying development of neural crest (NC), an emblematic embryonic multipotent cell population. more... Organism: Gallus gallus Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing 4 related Platforms 213 Samples FTP download: GEO (BED, MTX, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121527/ Series Accession: GSE121527 ID: 200121527 2059. Reconstruction of the global neural crest gene regulatory network in vivo [ATAC-seq] (Submitter supplied) Precise control of developmental processes is encoded in the genome in the form of gene regulatory networks (GRNs). Such multi-factorial systems are difficult to decode in vertebrates owing to their complex gene hierarchies and transient dynamic molecular interactions. Here we present a genome-wide in vivo reconstruction of the GRN underlying development of neural crest (NC), an emblematic embryonic multipotent cell population. more... Organism: Gallus gallus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19787 17 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497054 Series Accession: GSE121318 ID: 200121318 2060. Calcitonin gene related peptide negatively regulates alarmin-driven type 2 innate lymphoid cell responses (Submitter supplied) Neuroimmune interactions have emerged as critical modulators of allergic inflammation, and type 2 innate lymphoid cells (ILC2s) are an important cell type for mediating these interactions. Here, we show that ILC2s expressed both the neuropeptide CGRP (Calcitonin Gene-Related Peptide) and its receptor. CGRP potently inhibited alarmin-driven type 2 cytokine production and proliferation by lung ILC2s both in vitro and in vivo. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21273 GPL21626 46 Samples FTP download: GEO (H5, TAB, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA561400 Series Accession: GSE136154 ID: 200136154 2061. Liver-derived signals sequentially reprogram myeloid enhancers to initiate and maintain Kupffer cell identity (ATAC-Seq) (Submitter supplied) Tissue environment plays a powerful role in establishing and maintaining the distinct phenotypes of resident macrophages, but the underlying molecular mechanisms remain poorly understood. Here, we characterized transcriptomic and epigenetic changes in repopulating liver macrophages following acute Kupffer cell depletion as a means to infer signaling pathways and transcription factors that promote Kupffer cell differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 23 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528436 Series Accession: GSE128659 ID: 200128659 2062. Transcriptomic and epigenomic profiling of SETDB1 mediated repression in Acute Myeloid Leukemia (Submitter supplied) Epigenetic regulators play a critical role in normal and malignant hematopoiesis. We recently showed that the Histone 3 Lysine 9 (H3K9) methyltransferase SETDB1 negatively regulates the expression of the pro-leukemic genes HoxA9 and its cofactor Meis1 through deposition of promoter H3K9 trimethylation (H3K9me3) in MLL-AF9 AML cells. Here, we investigated the microbiological impact of altered SETDB1 expression in AML cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 26 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136850/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA563866 Series Accession: GSE136850 ID: 200136850 2063. CAR T cells Overexpressing cJun Are Exhaustion-Resistant and Mediate Enhanced Antitumor Activity (Submitter supplied) CAR T cells mediate antitumor effects in a small subset of cancer patients, but dysfunction due to T cell exhaustion is an important barrier to progress. To investigate the biology of exhaustion in human T cells expressing CAR receptors, we used a model system employing a tonically signaling CAR, which induces hallmarks of exhaustion described in other settings. Exhaustion was associated with a profound defect in IL-2 production alongside increased chromatin accessibility of AP-1 transcription factor motifs, and overexpression of numerous bZIP and IRF transcription factors that have been implicated in inhibitory activity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 20 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA563684 Series Accession: GSE136796 ID: 200136796 2064. EpiMethylTag simultaneously detects ATAC-seq or ChIP-seq signals with DNA methylation (Submitter supplied) We developed a low input, low sequencing depth method, EpiMethylTag that combines ATAC-seq or ChIP-seq (M-ATAC or M-ChIP) with bisulfite conversion, to simultaneously examine accessibility/TF binding and methylation on the same DNA. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 26 Samples FTP download: GEO (BED, BEDGRAPH, BW, COV, NARROWPEAK, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532432 Series Accession: GSE129673 ID: 200129673 2065. SREBP2(N) Overexpression in Human Umbilical Vein Endothelial Cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL11154 10 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121784/ Series Accession: GSE121784 ID: 200121784 2066. Chromatin Decondensation Data of SREBP2(N) Overexpression in Human Umbilical Vein Endothelial Cells (Submitter supplied) Sterol regulatory element-binding protein 2 (SREBP2) is a transcription factor that has been recently discovered to mediate vascular endothelial cell (EC) dysfunction. We therefore investigated the role of SREBP2 in the epigenetic function of EC biology through comparing ATAC-seq of human umbilical vein endothelial cells (HUVECs) that were infected with adenovirus overexpressing SREBP2 (Ad-SREBP2) or with empty vector (Ad-null) control. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA498425 Series Accession: GSE121781 ID: 200121781 2067. Phf21b is a novel histone reader essential for epigenetic silencing of cell cycle genes during neurogenesis (Submitter supplied) The role of chromatin-mediated regulation in cell-fate specification during mammalian development is been increasingly appreciated. However, very little is known about epigenetic regulatory networks during embryonic neurogenesis. In search for novel epigenetic regulators of neuronal development, we find that Phf21b is specifically expressed in the cortex during embryonic neurogenesis. Interestingly, knockdown of Phf21b during cortical development leads to a defective neurogenesis. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 37 Samples FTP download: GEO (TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA418762 Series Accession: GSE106999 ID: 200106999 2068. Attenuated FGF signaling underlies the forelimb heterochrony in the emu Dromaius novaehollandiae (ATAC-seq data) (Submitter supplied) The evolutionary origin of powered flight was fundamental to the establishment and radiation of the avian clade, and it remains a salient feature of modern birds. However, flight has been lost multiple times throughout the evolution of the avian lineage. Ratites (flightless palaeognaths, including the emu, ostrich and other well-known groups) are perhaps the most notable flightless birds, and their convergent losses of flight often coincide with adaptations to a cursorial lifestyle, including robust legs, digit loss, and reduced wings. more... Organism: Gallus gallus; Dromaius novaehollandiae Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL27417 GPL19787 18 Samples FTP download: GEO (BED, BEDGRAPH, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA563641 Series Accession: GSE136775 ID: 200136775 2069. Genome-wide histone modification and accessibility maps of mESCs, in the pluripotent state and after induced differentiation (Submitter supplied) Gene expression networks are tightly regulated by transcription factors (TF) and their targeted regulatory genomic elements (enhancers), which are known to correlate with specific histone modifications and chromatin accessibility. The identification of enhancers on a genome wide level is an important prerequisite for many functional studies, however the prediction of enhancer elements, especially with in response to changing conditions, remains challenging. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 26 Samples FTP download: GEO (BEDGRAPH, BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA492903 Series Accession: GSE120376 ID: 200120376 2070. Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation [ATAC_LinNegBM] (Submitter supplied) Transcriptional regulators, including the cohesin complex member STAG2, are recurrently mutated in cancer. The role of STAG2 in gene regulation, hematopoiesis, and tumor suppression remains unresolved. We show that Stag2 deletion in hematopoietic stem and progenitor cells (HSPCs) results in altered hematopoietic function, increased self-renewal, and impaired differentiation. Chromatin immunoprecipitation (ChIP) sequencing revealed that, although Stag2 and Stag1 bind a shared set of genomic loci, a component of Stag2 binding sites is unoccupied by Stag1, even in Stag2-deficient HSPCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 5 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA574135 Series Accession: GSE138004 ID: 200138004 2071. Cohesin Members Stag1 and Stag2 Display Distinct Roles in Chromatin Accessibility and Topological Control of HSC Self-Renewal and Differentiation [ATAC_LSK_GMP_CFUE_Stag2KOWT] (Submitter supplied) Transcriptional regulators, including the cohesin complex member STAG2, are recurrently mutated in cancer. The role of STAG2 in gene regulation, hematopoiesis, and tumor suppression remains unresolved. We show that Stag2 deletion in hematopoietic stem and progenitor cells (HSPCs) results in altered hematopoietic function, increased self-renewal, and impaired differentiation. Chromatin immunoprecipitation (ChIP) sequencing revealed that, although Stag2 and Stag1 bind a shared set of genomic loci, a component of Stag2 binding sites is unoccupied by Stag1, even in Stag2-deficient HSPCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE138nnn/GSE138003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA574134 Series Accession: GSE138003 ID: 200138003 2072. Genetic determinants of venetoclax resistance (Submitter supplied) Resistance to the first approved BCL-2 inhibitor venetoclax is emerging in lymphoid malignancies. The study aimed to identify the genetic determinants of such resistance. From genome-scale screens we determined the genes influencing the sensitivity to BCL-2 inhibition. The present set of data is related to expression changes (assessed by RNA sequencing) observed in the resistant OCI-Ly1 lymphoma cell line as well as those resulting from genetic perturbation (using CRISPR-Cas9) targeting the genes highlighted in our genome-scale screen. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL18573 44 Samples FTP download: GEO (BW, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528105 Series Accession: GSE128563 ID: 200128563 2073. Super-enhancer-guided decoding of gene regulatory networks in trophoblast stem cells (Submitter supplied) Cells belonging to trophoblast lineage are required for proper implantation and placentation, as well as the vascular, hematopoietic, and immunological properties of the placenta, a crucial organ mediating dynamic interactions between maternal and fetal tissues. Defects in trophoblast lineage development can cause early pregnancy failure or other pregnancy-related disorders. Despite its pivotal roles, the placenta remains as one of the least studied organs. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 100 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA435113 Series Accession: GSE110950 ID: 200110950 2074. Endogenous fluctuations of OCT4 and SOX2 bias pluripotent cell fate decisions (Submitter supplied) SOX2 and OCT4 are pioneer transcription factors playing a key role in embryonic stem (ES) cell self-renewal and differentiation. How temporal fluctuations in their expression levels bias lineage commitment is unknown. Here we generated knock-in reporter fusion ES cell lines allowing to monitor endogenous SOX2 and OCT4 protein fluctuations in living cells and to determine their impact on mesendodermal and neuroectodermal commitment. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA522359 Series Accession: GSE126554 ID: 200126554 2075. Selective eradication of leukemia cells with reprogramming factors (ATAC-Seq) (Submitter supplied) We used ATAC-seq to evaluate the global programme of chromtain accessibility after Dox inducible Yamanaka factors ectopic expression during this biological process. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 36 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA495799 Series Accession: GSE121121 ID: 200121121 2076. CREB5 promotes resistance to androgen-receptor antagonists and androgen deprivation in prostate cancer (Submitter supplied) Inhibition of androgen-receptor (AR)signaling is the foundation of therapeutic regimens for advanced prostate cancers. However, nearly all patientsdevelop resistance and some never respond. To identify genes that mediate resistance to androgen ablation therapy, we performed an open reading frame (ORF) expression screen of17,255 ORFs and found that the transcription factorCREB5robustly conferred resistance to androgen deprivation and AR inhibition by enzalutamide. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL18573 28 Samples FTP download: GEO (BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA573060 Series Accession: GSE137775 ID: 200137775 2077. Selective eradication of leukemia cells with reprogramming factors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 72 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121123/ Series Accession: GSE121123 ID: 200121123 2078. ATAC-seq profiling assessing the impact of IFNg and Pictilisib on human SqCC/Y1 cells (Submitter supplied) To examine differences in chromatin accessibility SqCC/Y1 cells were treated with Pictilisib to inhibit PI3K signaling in combination with DMSO or IFNg for 48 hours and ATAC-seq performed. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21290 12 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA566384 Series Accession: GSE137719 ID: 200137719 2079. The impact of pro-inflammatory cytokines on the β-cell regulatory landscape provides insights into the genetics of type 1 diabtes [ATAC-seq] (Submitter supplied) Early stages of type 1 diabetes (T1D) are characterized by local autoimmune inflammation and progressive loss of insulin-producing pancreatic β cells. We show here that exposure to pro-inflammatory cytokines unmasks a striking plasticity of the β-cell regulatory landscape. We expand the repertoire of human islet regulatory elements by mapping stimulus-responsive enhancers linked to changes in the β-cell transcriptome, proteome and 3D chromatin structure. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA508642 Series Accession: GSE123404 ID: 200123404 2080. Multiscale gene expression profiling of 1 cm root tips of control and submerged Oryza sativa, Medicago truncatula, Solanum lycopersicum and Solanum pennellii seedlings (Submitter supplied) Climate change has increased the frequency and intensity of floods that impact global agricultural productivity. To better understand the response mechanisms and evolutionary history of gene family member regulation across angiosperm phyla, we studied the rapid submergence response of rice, the legume Medicago truncatula, and two Solanum species, domesticated tomato (S. lycopersicum cv. M82) and its dryland-adapted wild relative S. more... Organism: Medicago truncatula; Oryza sativa Japonica Group; Solanum pennellii; Solanum lycopersicum Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 8 related Platforms 231 Samples FTP download: GEO (BED, BW, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528488 Series Accession: GSE128680 ID: 200128680 2081. Tox4 Modulates Cell Fate Reprogramming to iPS Cells and Direct Reprogramming (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL21103 20 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127933/ Series Accession: GSE127933 ID: 200127933 2082. Tox4 Modulates Cell Fate Reprogramming (Submitter supplied) Reprogramming to induced pluripotency induces the switch of somatic cell identity to induced pluripotent stem cells (iPSCs). However, the mediators and mechanisms of reprogramming remain largely unclear. To elucidate the mediators and mechanisms of reprogramming, we used a siRNA mediated knockdown approach for selected candidate genes during the conversion of somatic cells into iPSCs. We identified Tox4 as a novel factor that modulates cell fate, using reprogramming efficiency towards iPSCs as an assay. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA525830 Series Accession: GSE127930 ID: 200127930 2083. Widespread Long-range Cis-Regulatory Elements in the Maize Genome (Submitter supplied) Genetic mapping studies on crops suggest that agronomic traits can be controlled by loci within the gene-distal intergenic space. Despite the biological importance and the potential agronomic utility of these intergenic loci, they remain virtually uncharacterized in all crop species to date. Here, we provide genetic, epigenomic, and functional molecular evidence supporting the widespread existence of gene-distal (hereafter, distal) loci which act as long-range transcriptional cis-regulatory elements (CREs) in the maize genome. more... Organism: Zea mays Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other Platforms: GPL20156 GPL17628 81 Samples FTP download: GEO (BED, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA492464 Series Accession: GSE120304 ID: 200120304 2084. Unique regulation of cis-regulatory elements facilitates reacquisition of pluripotency [ATAC-seq] (Submitter supplied) Ectopic expression of selected transcription factors enables reprogramming of somatic cells to pluripotency. Despite steady progress in the field the exact molecular mechanisms that coordinate this remarkable transition remain still largely elusive. To better understand the final steps during the acquisition of pluripotency, we optimized an experimental system where cells exit pluripotency and then are systematically challenged to reacquire pluripotency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 18 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481459 Series Accession: GSE117202 ID: 200117202 2085. Characterization of IL-1α–responsive enhancers and of IL-1α -mediated changes in chromatin topology. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by array Platforms: GPL11154 GPL13497 32 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134436/ Series Accession: GSE134436 ID: 200134436 2086. The activation of IL-1 induced enhancers depends on TAK1 kinase activity and NF-KB p65 (ATAC-Seq) (Submitter supplied) The inflammatory gene response requires activation of the protein kinase TAK1, but it is currently unknown how TAK1-derived signals coordinate transcriptional programs in the genome. We determined the chromatin accessibilty at the genome-wide level by ATAC-seq experiments. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA555426 Series Accession: GSE134434 ID: 200134434 2087. A comparison of evolutionary changes and constraints on gene regulation between fin and limb development (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Chiloscyllium punctatum; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21273 GPL27153 GPL18480 43 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136445/ Series Accession: GSE136445 ID: 200136445 2088. A comparison of evolutionary changes and constraints on gene regulation between fin and limb development [ATAC-seq] (Submitter supplied) We report time-series transcriptome of developing bamboo shark fin buds and mouse forelimb buds, and open chromatin regions of developing mouse forelimb buds. The major contributions of this study are 1) transcriptomic data with an accurate orthology map for a systematic comparison between the two species; 2) high quality chromatin accessibility data for mouse limb development; 3) discovery of mass heterochronic genes between fins and limbs; 4) hourglass-shaped conservation between fins and limbs, providing insights into a general trend of gene regulatory evolution. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 13 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562519 Series Accession: GSE136415 ID: 200136415 2089. Cell differentiation grade determines distinct FOXA2 contributions to the cis-regulatory networks of pancreatic cancer cells [ATAC-seq] (Submitter supplied) Abnormal differentiation contributes to the spectrum of aberrant properties of tumor cells. Differentiation of both normal and tumor cells is controlled by regulatory networks enforced by transcription factors (TFs) involved in lineage specification. Among them, pioneer factors such as FOXA1/2, are able to bind and make accessible naïve chromatin, thus critically contributing to the establishment of gene regulatory networks. more... Organism: Homo sapiens Type: Genome variation profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA526454 Series Accession: GSE128100 ID: 200128100 2090. c-Maf regulates the plasticity of group 3 innate lymphoid cells by restraining the type 1 program [ATAC-seq] (Submitter supplied) The transcription factor c-Maf is an essential regulator of group 3 ILC homeostasis and effector plasticity. c-Maf limits acquisition of the type 1 program and conversion to the ILC1 fate through restraint of T-bet expression and function. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE137nnn/GSE137319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA565165 Series Accession: GSE137319 ID: 200137319 2091. A reference map of cardiac transcription factor chromatin occupancy identifies dynamic and conserved transcriptional enhancers (Submitter supplied) Mapping the chromatin occupancy of transcription factors (TFs) is a key step in deciphering the transcriptional programs that orchestrate organ development and homeostasis. Here we used biotinylated knockin alleles of seven key TFs (GATA4, NKX2-5, MEF2A, MEF2C, SRF, TBX5, TEAD1) that regulate heart development and homeostasis to sensitively and reproducibly map their genome-wide occupancy in the fetal and adult heart. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19057 GPL13112 45 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510592 Series Accession: GSE124008 ID: 200124008 2092. Integrative analysis from the epigenome to translatome uncovers patterns of dominant nuclear regulation during transient stress (Submitter supplied) Background: The regulation of gene activity in response to energy availability is an universal phenomenon. When molecular oxygen is limited the production of ATP is inefficient and growth is curtailed. The plant Arabidopsis thaliana rapidly responds to oxygen deprivation (hypoxia) by elevating the abundance of ~50 hypoxia-responsive gene (HRG) transcripts that are prioritized for translation. Many other cellular mRNAs are sequestered in ribonucleoprotein complexes and not translated during hypoxia, including those encoding ribosomal proteins (RPs). more... Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL21785 GPL17639 87 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506408 Series Accession: GSE122804 ID: 200122804 2093. SIGNAL INTEGRATION AND TRANSCRIPTIONAL REGULATION OF THE INFLAMMATORY RESPONSE MEDIATED BY THE GM-/M-CSF SIGNALING AXIS IN HUMAN MONOCYTES (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL20301 23 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123574/ Series Accession: GSE123574 ID: 200123574 2094. SIGNAL INTEGRATION AND TRANSCRIPTIONAL REGULATION OF THE INFLAMMATORY RESPONSE MEDIATED BY THE GM-/M-CSF SIGNALING AXIS IN HUMAN MONOCYTES [RNA-seq] (Submitter supplied) In recent years, the M-CSF and GM-CSF cytokines have been identified as opposing regulators of the inflammatory program. However, the two cytokines are simultaneously present in the inflammatory milieu, and it is not clear how cells integrate these signals. In order to understand the regulatory networks associated with the GM/M-CSF signaling axis we analyzed DNA methylation in human monocytes. Our results indicate that GM-CSF induces activation of the inflammatory program and extensive DNA methylation changes, while M-CSF-polarized cells are in a less differentiated state. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 11 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509249 Series Accession: GSE123573 ID: 200123573 2095. SIGNAL INTEGRATION AND TRANSCRIPTIONAL REGULATION OF THE INFLAMMATORY RESPONSE MEDIATED BY THE GM-/M-CSF SIGNALING AXIS IN HUMAN MONOCYTES [ATAC-seq] (Submitter supplied) In recent years, the M-CSF and GM-CSF cytokines have been identified as opposing regulators of the inflammatory program. However, the two cytokines are simultaneously present in the inflammatory milieu, and it is not clear how cells integrate these signals. In order to understand the regulatory networks associated with the GM/M-CSF signaling axis we analyzed DNA methylation in human monocytes. Our results indicate that GM-CSF induces activation of the inflammatory program and extensive DNA methylation changes, while M-CSF-polarized cells are in a less differentiated state. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509243 Series Accession: GSE123569 ID: 200123569 2096. Genome Wide Chromatin Mapping of accessibility (ATAC-seq) Dichotomous effects of REV-ERBa on group 3 innate lymphoid cells (Submitter supplied) Circadian rhythm influences the functions of ILC3, and the circadian regulator, REV-ERB, has differential impacts on the development, metabolism, and cytokine secretion of ILC3 subsets. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562819 Series Accession: GSE136590 ID: 200136590 2097. TAF1 is critical for AE driven leukemogenesis [ATAC-seq] (Submitter supplied) TAF1 is essential for AE driven leukemogenesis. Depletion of TAF1 impairs the recruitment of AE to its target genes, interfereing with its control of gene expression. The bromodomains of TAF1 associate with K43 acetylated AE and this association plays a role in the proliferationof AE expressing AML cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA553502 Series Accession: GSE134018 ID: 200134018 2098. A Unique Epigenomic Landscape Defines Human Erythropoiesis (ATAC-seq) (Submitter supplied) Mammalian erythropoiesis yields a highly specialized cell type, the mature erythrocyte, evolved to meet organismal needs of increased oxygen carrying capacity. To better understand regulation of erythropoiesis, we performed genome-wide chromatin accessibility studies, DNA methylation studies, and transcriptome analyses and correlated this with genomic organization in highly purified populations of primary human erythroid cells across the stages of erythroid development and differentiation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 16 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA526916 Series Accession: GSE128266 ID: 200128266 2099. Enhancer Profiling Reveals Regulators of Skeletal Muscle Identity and Reprogramming [ATAC-seq] (Submitter supplied) Chromatin immunoprecipitation sequencing of H3K4me2, H3K27ac as well as, ATACseq and RNA-seq reveals regulatory landscapes across different muscle groups, as well as in response to chronic exercise or muscle PGC1a overexpression. This work defines the unique enhancer repetoire of skeletal muscle in vivo and reveals that highly divergent exercise-induced or PGC1a-driven epigenomic programs direct partially convergent transcriptional networks. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556888 Series Accession: GSE134962 ID: 200134962 2100. Generating in vivo somatic mouse mosaics with locus-specific, stably-integrated transgenic elements for studies of gene function in development and tumorigenesis [bulk ATAC-seq] (Submitter supplied) We report the development and efficiency of a new method to create somatic mosaicism in mice named as mosaic analysis by dual recombinase-mediated cassette exchange. Then we generate, as a proof of concept, a new model for pediatric glioma. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545352 Series Accession: GSE131940 ID: 200131940 2101. Generating in vivo somatic mouse mosaics with locus-specific, stably-integrated transgenic elements for studies of gene function in development and tumorigenesis [scATAC-seq] (Submitter supplied) We report the development and efficiency of a new method to create somatic mosaicism in mice named as mosaic analysis by dual recombinase-mediated cassette exchange. Then we generate, as a proof of concept, a new model for pediatric glioma. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545155 Series Accession: GSE131873 ID: 200131873 2102. Generating in vivo somatic mouse mosaics with locus-specific, stably-integrated transgenic elements for studies of gene function in development and tumorigenesis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL9185 GPL19057 13 Samples FTP download: GEO (BED, BW, CSV, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131675/ Series Accession: GSE131675 ID: 200131675 2103. Chromatin architecture as a checkpoint for NASH-associated liver injury (Submitter supplied) Nonalcoholic steatohepatitis (NASH) is a progressive liver disease that is characterized by liver injury, inflammation and fibrosis. NASH pathogenesis is linked to reprogramming of chromatin landscape in the liver that predisposes hepatocytes to stress-induced tissue injury. However, the molecular nature of the putative checkpoint that maintains chromatin architecture and preserves hepatocyte health remains elusive. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL23479 GPL24247 17 Samples FTP download: GEO (BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543292 Series Accession: GSE131336 ID: 200131336 2104. Enhancer Profiling Reveals Regulators of Skeletal Muscle Identity and Reprogramming [ChIP-seq, ATAC-seq] (Submitter supplied) Chromatin immunoprecipitation sequencing of H3K4me2, H3K27ac as well as, ATACseq and RNA-seq reveals regulatory landscapes across different muscle groups, as well as in response to chronic exercise or muscle PGC1a overexpression. This work defines the unique enhancer repetoire of skeletal muscle in vivo and reveals that highly divergent exercise-induced or PGC1a-driven epigenomic programs direct partially convergent transcriptional networks. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 62 Samples FTP download: GEO (BED, BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510112 Series Accession: GSE123877 ID: 200123877 2105. Genome-wide enhancer profiling identifies novel Shh regulated gene targets in the developing cochlear duct (Submitter supplied) The development of the mammalian inner ears is a highly dynamic process that is dependent on the interplay of multiple signaling molecules. Previous studies demonstrated the role of Shh in the initiation and outgrowth of the cochlea. However, the gene targets of Shh in the cochlea largely remain unknown. We show in this study, Shh responsive genes that are loss in the cochlea of Smoecko mutant (Smo null) and upregulated in Shh-P1 mutant embryos through comparative RNA-seq profiling. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 22 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542806 Series Accession: GSE131165 ID: 200131165 2106. Alpha-ketoglutarate links p53 to cell fate during tumor suppression (Submitter supplied) The tumor suppressor p53 is mutated in the majority of human cancers, including pancreatic ductal adenocarcinoma (PDAC)1,2. Wild-type p53 accumulates in response to cellular stress and acts to regulate the expression of genes that influence cell fate and constrain tumorigenesis2. p53 also can modulate cellular metabolism3, though it remains unclear how the metabolic effects of p53 influence tumor suppression or whether the metabolic consequences of p53 loss play a role in disease maintenance. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA470700 Series Accession: GSE114263 ID: 200114263 2107. KLF4 binding during reprogramming is linked to enhancer rewiring and is critical for the architecture and regulation of enhancer hubs [4C-Seq] (Submitter supplied) Purpose: We captured on a genome-wide scale the binding of KLF4 during iPSC formation and its effects on chromatin state, transcriptional activity and chromatin topology around its targets. Methods: We used a well-characterized reprogramming system to apply genome-wide assays that map KLF4 binding (ChIP-seq), chromatin accessibility (ATAC-seq), enhancer and gene activity (H3K27ac ChIP-seq and RNA-seq), enhancer connectivity (H3K27ac Hi-ChIP) as well as KLF4-centric chromatin looping (KLF4 Hi-ChIP) at different stages during acquisition of pluripotency. more... Organism: Mus musculus Type: Other Platform: GPL21103 12 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA557475 Series Accession: GSE135124 ID: 200135124 2108. KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency [RNA-seq] (Submitter supplied) Cell fate transitions are accompanied by global transcriptional, epigenetic and topological changes driven by transcription factors (TFs), as is strikingly exemplified in somatic cell reprogramming to pluripotent stem cells (PSCs) by OCT4, KLF4, SOX2 and cMYC. How TFs orchestrate the complex molecular changes around their targets in a temporal manner remains largely elusive. Here, using KLF4 as a paradigm, we provide the first TF-centric view of chromatin reorganization and the association to 3D enhancer rewiring and the transcriptional changes of linked genes during reprogramming of mouse embryonic fibroblasts to (MEFs) to PSCs. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531498 Series Accession: GSE129495 ID: 200129495 2109. KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency [ChIP-seq] (Submitter supplied) Cell fate transitions are accompanied by global transcriptional, epigenetic and topological changes driven by transcription factors (TFs), as is strikingly exemplified in somatic cell reprogramming to pluripotent stem cells (PSCs) by OCT4, KLF4, SOX2 and cMYC. How TFs orchestrate the complex molecular changes around their targets in a temporal manner remains largely elusive. Here, using KLF4 as a paradigm, we provide the first TF-centric view of chromatin reorganization and the association to 3D enhancer rewiring and the transcriptional changes of linked genes during reprogramming of mouse embryonic fibroblasts to (MEFs) to PSCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531497 Series Accession: GSE129494 ID: 200129494 2110. KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL17021 GPL21103 108 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113431/ Series Accession: GSE113431 ID: 200113431 2111. KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency [RNA-seq] (Submitter supplied) Summary: Cell fate transitions are accompanied by global transcriptional, epigenetic and topological changes driven by transcription factors (TFs), as is strikingly exemplified in somatic cell reprogramming to pluripotent stem cells (PSCs) by OCT4, KLF4, SOX2 and cMYC. How TFs orchestrate the complex molecular changes around their targets in a temporal manner remains largely elusive. Here, using KLF4 as a paradigm, we provide the first TF-centric view of chromatin reorganization and the association to 3D enhancer rewiring and the transcriptional changes of linked genes during reprogramming of mouse embryonic fibroblasts to (MEFs) to PSCs. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451163 Series Accession: GSE113430 ID: 200113430 2112. KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency [ChIP-seq] (Submitter supplied) Summary: Cell fate transitions are accompanied by global transcriptional, epigenetic and topological changes driven by transcription factors (TFs), as is strikingly exemplified in somatic cell reprogramming to pluripotent stem cells (PSCs) by OCT4, KLF4, SOX2 and cMYC. How TFs orchestrate the complex molecular changes around their targets in a temporal manner remains largely elusive. Here, using KLF4 as a paradigm, we provide the first TF-centric view of chromatin reorganization and the association to 3D enhancer rewiring and the transcriptional changes of linked genes during reprogramming of mouse embryonic fibroblasts to (MEFs) to PSCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 35 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113429/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451162 Series Accession: GSE113429 ID: 200113429 2113. KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency [ATAC-seq] (Submitter supplied) Summary: Cell fate transitions are accompanied by global transcriptional, epigenetic and topological changes driven by transcription factors (TFs), as is strikingly exemplified in somatic cell reprogramming to pluripotent stem cells (PSCs) by OCT4, KLF4, SOX2 and cMYC. How TFs orchestrate the complex molecular changes around their targets in a temporal manner remains largely elusive. Here, using KLF4 as a paradigm, we provide the first TF-centric view of chromatin reorganization and the association to 3D enhancer rewiring and the transcriptional changes of linked genes during reprogramming of mouse embryonic fibroblasts to (MEFs) to PSCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451164 Series Accession: GSE113428 ID: 200113428 2114. KLF4 binding is involved in the organization and regulation of 3D enhancer networks during acquisition and maintenance of pluripotency [HiChIP and HiC] (Submitter supplied) Summary: Cell fate transitions are accompanied by global transcriptional, epigenetic and topological changes driven by transcription factors (TFs), as is strikingly exemplified in somatic cell reprogramming to pluripotent stem cells (PSCs) by OCT4, KLF4, SOX2 and cMYC. How TFs orchestrate the complex molecular changes around their targets in a temporal manner remains largely elusive. Here, using KLF4 as a paradigm, we provide the first TF-centric view of chromatin reorganization and the association to 3D enhancer rewiring and the transcriptional changes of linked genes during reprogramming of mouse embryonic fibroblasts to (MEFs) to PSCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 25 Samples FTP download: GEO (BED, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450841 Series Accession: GSE113339 ID: 200113339 2115. IRF2 is a master regulator of human keratinocyte stem cell fate (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21697 GPL16791 GPL18573 40 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135680/ Series Accession: GSE135680 ID: 200135680 2116. IRF2 is a master regulator of human keratinocyte stem cell fate [ATAC-seq] (Submitter supplied) Resident adult epithelial stem cells maintain tissue homeostasis by balancing self-renewal and provision of differentiated cells. Human epidermal keratinocytes retain stem cell potential in vitro but this is highly variable and lost over time suggesting extrinsic and intrinsic regulation. Transcription factor-controlled regulatory circuitries govern cell identity and are sufficient to induce pluripotency or transdifferentiate cell types. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 9 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559633 Series Accession: GSE135675 ID: 200135675 2117. Dynamic incorporation of histone H3 variants into chromatin is essential for acquisition of aggressive traits and metastatic colonization [ATAC-seq] (Submitter supplied) Metastasis is the leading cause of cancer mortality. Chromatin remodeling is crucial for metastasis formation, laying the ground for the cellular reprogramming necessary to drive metastasis. However, little is known about the nature of this remodeling and its regulation. Here, we show that metastasis-inducing pathways regulate histone chaperones to reduce canonical histone incorporation into chromatin, triggering deposition of H3.3 variant at the promoters of poor-prognosis genes and metastasis-inducing transcription factors. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545714 Series Accession: GSE132046 ID: 200132046 2118. NSD2 overexpression links drives clustered chromatin and transcriptional changes in a subset of insulated domains of insulated domains (Submitter supplied) We analyzed the impact of NSD2 overexpression on 3D genome reorganization and gene expression in multiple myeloma cell lines Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 48 Samples FTP download: GEO (BED, BEDGRAPH, BW, HIC, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544287 Series Accession: GSE131651 ID: 200131651 2119. Immediate and deferred epigenomic signatures of in vivo neuronal activation in mouse hippocampus (Submitter supplied) Activity-driven transcription plays an important role in many brain processes, including those underlying memory and epilepsy. Here, we combine genetic tagging of nuclei and ribosomes with RNA-seq, ChIP-seq, ATAC-seq and Hi-C to investigate transcriptional and chromatin changes occurring in mouse hippocampal excitatory neurons at different timepoints after synchronous activation during seizure and sparse activation by novel context exploration. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL17021 GPL24247 40 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125068/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA515067 Series Accession: GSE125068 ID: 200125068 2120. Single-Cell Chromatin Analysis of Mammary Gland Development Reveals Cell-State Transcriptional Regulators and Lineage Relationships (Submitter supplied) We perfromed single-nucleus ATAC-seq (snATAC-seq) on normal mammary epithelial cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BED, CSV, TXT, XML) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125523/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA516680 Series Accession: GSE125523 ID: 200125523 2121. ATAC-Seq Profiling of Open Chromatin Regions in Soybean Early-Maturation Embryos (Submitter supplied) Transcription Factors are bound to the nucleosome-depleted region or open chormatin. ATAC-Seq can help us to dissect the interactions among TFs which are important for soybean seed development. Organism: Glycine max Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL15008 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562918 Series Accession: GSE136645 ID: 200136645 2122. Dissecting the Individual and Collective Regenerative Behavior of Muscle Stem Cells During Aging (Submitter supplied) We utilize an integrative genomics approach (bulk RNA-Seq, ATAC-Seq) to show how Muscle Stem Cells (MuSCs) from distinct age groups (young and aged) are significantly altered during the regenerative response. Transcriptional landscapes during quiescence, activation, proliferation and differentiation from young and aged mice are profiled and chromatin accessibility is compared. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 90 Samples FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497842 Series Accession: GSE121589 ID: 200121589 2123. Single-cell RNA-seq Reveals a Developmental Hierarchy and Oncogenic Networks for Initiation of Medulloblastoma [ATAC-Seq] (Submitter supplied) By utilizing single-cell analysis at different stages of tumorigenesis, we demonstrated a developmental hierarchy of dynamic progenitor pools in murine sonic hedgehog-(SHH) MBs. We identified Olig2+ progenitors as transit-amplifying cells during initial tumorigenic phases. These cells are quiescent stem-like progenitors in full-blown tumors but enriched in therapy-resistant as well as recurrent medulloblastomas. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA495715 Series Accession: GSE120967 ID: 200120967 2124. Genetic Ancestry and Natural Selection Drive Population Differences in Immune Responses to Pathogens (Submitter supplied) Individuals from different populations vary considerably in their susceptibility to immune-related diseases. To understand how genetic variation and natural selection contribute to these differences, we tested for the effects of African versus European ancestry on the transcriptional response of primary macrophages to live bacterial pathogens. A total of 9.3% of macrophage-expressed genes show ancestry-associated differences in the gene regulatory response to infection, and African ancestry specifically predicts a stronger inflammatory response and reduced intracellular bacterial growth. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 3 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE136nnn/GSE136566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA562701 Series Accession: GSE136566 ID: 200136566 2125. Irf6 wildtype and knock out ATAC-seq (Submitter supplied) The integrity of the mammalian epidermis is essential for organism survival, and it depends on a balance of proliferation and differentiation in the resident stem cell population. The kinase Ripk4 and the transcription factor Irf6 are mutated in severe developmental syndromes in humans, and mice lacking these genes display epidermal hyperproliferation and soft tissue fusions, resulting in neonatal lethality. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127341/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524711 Series Accession: GSE127341 ID: 200127341 2126. Irf6 wildtype and knock out ChIP-seq (Submitter supplied) The integrity of the mammalian epidermis is essential for organism survival, and it depends on a balance of proliferation and differentiation in the resident stem cell population. The kinase Ripk4 and the transcription factor Irf6 are mutated in severe developmental syndromes in humans, and mice lacking these genes display epidermal hyperproliferation and soft tissue fusions, resulting in neonatal lethality. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 13 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524709 Series Accession: GSE127338 ID: 200127338 2127. RNAseq E16.5 mouse skin Irf6 KO vs WT (Submitter supplied) The integrity of the mammalian epidermis is essential for organism survival, and it depends on a balance of proliferation and differentiation in the resident stem cell population. The kinase Ripk4 and the transcription factor Irf6 are mutated in severe developmental syndromes in humans, and mice lacking these genes display epidermal hyperproliferation and soft tissue fusions, resulting in neonatal lethality. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510612 Series Accession: GSE124048 ID: 200124048 2128. RNAseq E15.5 mouse skin WT, Irf6 KO, Ripk4 KD, and Irf6 S413A.S424A knockin (Submitter supplied) The integrity of the mammalian epidermis is essential for organism survival, and it depends on a balance of proliferation and differentiation in the resident stem cell population. The kinase Ripk4 and the transcription factor Irf6 are mutated in severe developmental syndromes in humans, and mice lacking these genes display epidermal hyperproliferation and soft tissue fusions, resulting in neonatal lethality. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 24 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510610 Series Accession: GSE124047 ID: 200124047 2129. Expression profile (nanoCAGE-seq), chromatin accessibility (ATAC-seq) profile, and histone modification profile (ChIP-seq for H3K4me3, H3K9me3, and H3K27me3) during the course of mouse gonocyte development (Submitter supplied) How de novo DNA methylation over heterochromatin is introduced in mouse gonocyte remains obscure. We performed nanoCAGE-seq, ChIP-seq for three major histone marks (H3K4me3, H3K9me3, H3K27me3), ATAC-seq, Hi-C during the course of mouse gonocyte development (E13.5, E17.5, E19.5, P2) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL13112 GPL16417 56 Samples FTP download: GEO (H5, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA495765 Series Accession: GSE121118 ID: 200121118 2130. Quantitative Analysis of Telomeric Nucleosomal Compaction following ATRX Depletion (Submitter supplied) The goal of this experiment is to determine the effect of ATRX depletion on telomeric chromatin compaction. We adapted the ATAC-seq to quantify telomere chromatin accessibility. By scoring the ratio of sequence reads that contained 3 - 12 tandem telomeric repeats over the total number of reads in wild-type and ATRX deplted cells, our analysis revealed that CRISPR/Cas9-mediated ATRX depletion induces a progressive telomere de-compaction. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 10 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540852 Series Accession: GSE130640 ID: 200130640 2131. Mitochondrial Calcium Exchange links Metabolism with the Epigenome to Control Cellular Differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135531/ Series Accession: GSE135531 ID: 200135531 2132. Mitochondrial Calcium Exchange links Metabolism with the Epigenome to Control Cellular Differentiation (ATAC-seq) (Submitter supplied) Fibroblast to myofibroblast differentiation is crucial for the initial healing response but excessive myofibroblast activation leads to pathological fibrosis. Therefore, it is imperative to understand the mechanisms underlying myofibroblast formation. Here we report that mitochondrial calcium (mCa2+) signaling is a regulatory mechanism in myofibroblast differentiation and fibrosis. We demonstrate that inhibition of mCa2+ uptake in fibroblasts enhances myofibroblast formation and this translates to increased fibrosis following injury. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559175 Series Accession: GSE135530 ID: 200135530 2133. ATAC-seq analyses with wild-type and PML KO mESCs (Submitter supplied) Promyelocytic leukemia (PML) body is a phase-separated nuclear structure composed of various proteins including several chromatin regulators, and physically associates with chromatin, implying its crucial roles for particular genome functions. To investigate functional roles of PML bodies in chromatin organization, we conducted ATAC-seq with wild-type and PML KO mESCs. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE135nnn/GSE135561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA559287 Series Accession: GSE135561 ID: 200135561 2134. β-catenin ChIP-seq, RARα ChIP-seq, and ATAC-seq datasets in the standard or altered 2C protocols. (Submitter supplied) We performed β-catenin ChIP-seq, RARα ChIP-seq, and ATAC-seq on the hiPSC-derived cells in the standard or altered 2C differentiation protocols. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 20 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548317 Series Accession: GSE132532 ID: 200132532 2135. Dynamic Lineage Priming by ERK is Driven by Transcription Factor-Independent Enhancer Regulation [ATAC-Seq] (Submitter supplied) Extensive analysis if the means by which ERK affects transcription via enhancer regulation in mouse embryonic stem cells. This study combines analysis of mRNA, and nascent RNA dynamics and correlates this with changes in transcription factor, co-factor, and RNAPII binding and activity. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548166 Series Accession: GSE132480 ID: 200132480 2136. Bcl11b prevents catastrophic autoimmunity by controlling multiple aspects of regulatory T-cell gene expression program [ATAC-seq] (Submitter supplied) In order to investigate whether Bcl11b mediates any chormatin accebility in Treg cell, we performed ATAC-Seq from Bcl11b sufficient (WT) and Bcl11b deficient Treg(KO) cells.We used 100,000 cells for each experiment. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA533665 Series Accession: GSE130059 ID: 200130059 2137. Bcl11b prevents catastrophic autoimmunity by controlling multiple aspects of regulatory T-cell gene expression program (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL16417 34 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120948/ Series Accession: GSE120948 ID: 200120948 2138. Investigation of bivalently marked promoters in patient-derived colorectal cancer stem cells by ChIP-seq, chromatin accessibility by ATAC-seq, and differential regulation of gene expression following EZH2 inhibition using RNA-seq. (Submitter supplied) We profiled changes in gene expression following EZH2 inhibition, in a patient-derived, cancer stem cell enriched model. Cells were treated with UNC1999, an EZH2 inhibitor, for 7 days, prior to processing for RNA-seq. In parallel, we identified H3K27me3 and H3K4me3 marked promoters using ChIP-seq at baseline in the same model, as well as chromatin accessibility using ATAC-seq. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 13 Samples FTP download: GEO (BROADPEAK, CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113176/ Series Accession: GSE113176 ID: 200113176 2139. Interplay between FACT subunit SPT16 and TRIM33 can remodel chromatin at macrophage distal regulatory elements [ATAC-seq] (Submitter supplied) Although the advances in genome-wide approaches have elucidated the functions of macrophage-specific distal regulatory elements in transcriptional responses, chromatin structures associated with PU.1 priming and the underlying mechanisms of action of these cis-acting sequences are not characterized. Here, we show that, in macrophages, FACT subunit SPT16 can bind to positioned nucleosomes directly flanking PU.1-bound sites at previously uncharacterized distal regulatory elements located near genes essential for macrophage development and functions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA549476 Series Accession: GSE132922 ID: 200132922 2140. LSD1 regulates splenic B cell chromatin accessibility (Submitter supplied) To understand the role of LSD1 in splenic B cell development, spleens from mice with B cell conditional deletion of LSD1 were harvested, B220+CD93–GL7–CD23–CD21hiCD1d+ marginal zone B cells and B220+CD93–GL7–CD23+CD21midCD1d– follicular B cells were FACS-sorted, and ATAC-seq was performed to identify LSD1-target regulated chromatin. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA546437 Series Accession: GSE132196 ID: 200132196 2141. Metabolic reprogramming of macrophage polarization by creatine [ATAC-seq] (Submitter supplied) We found that the creatine metabolic pathway was differentially regulated under M1 versus M2 polarizing conditions. In return, creatine could suppress M1 by blocking STAT1 tyrosine phosphorylation while promote M2 by sustaining chromatin accessibility of specific gene loci. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433645 Series Accession: GSE110403 ID: 200110403 2142. ATAC-seq of P2 mouse epithelial and non-epithelial cochlear cells (Submitter supplied) To identify gene regulatory regions in the cochlea, we FACS-sorted biological duplicates of epithelial cells (CD326+; including hair cells and supporting cells) and non-epithelial cells (CD326-; predominantly mesenchymal cells) from mouse cochlea at postnatal day 2 and performed ATAC-seq to identify open chromatin regions in each cell type. CD-1 timed-pregnant females were purchased from Charles River (Maryland). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521063 Series Accession: GSE126129 ID: 200126129 2143. Dissection of nucleosome remodeling at cis-regulatory elements in stimulated macrophages [ATAC-Seq] (Submitter supplied) Dynamic control of the accessibility of the genomic regulatory information is at the heart of stimulus-induced gene expression changes. Whereas chromatin accessibility assays describe dynamic changes in open chromatin over time, they provide only indirect and limited information on the nucleosome remodeling events that underlie such changes. Here, we combined accessibility assays and ChIP-seq on nucleosomes generated by micrococcal nuclease digestion in resting and LPS-activated macrophages. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 15 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490021 Series Accession: GSE119690 ID: 200119690 2144. Specificity of enhancer selection by IRF3, IRF5 and IRF9 in dendritic cells (Submitter supplied) To discover the key determinants of IRF-specific enhancer selection, we identified and characterized IRF binding regions. Using chromatin immunoprecipitation coupled with deep sequencing (ChIP-seq), we mapped the binding regions of IRF3, IRF5, and IRF9 in murine dendritic cells (DCs) stimulated with TLR3 and TLR9 agonists, as well as IFNβ, respectively. We comprehensively analysed the IRF cistromes to identify characteristic features, including DNA motifs for IRFs and other transcription factors, and chromatin status. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 8 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA513442 Series Accession: GSE125340 ID: 200125340 2145. Divergent principles specifying inflammatory versus antiviral transcriptional programs in dendritic cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17021 56 Samples FTP download: GEO (TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106754/ Series Accession: GSE106754 ID: 200106754 2146. Divergent principles specifying inflammatory versus antiviral transcriptional programs in dendritic cells [ATAC-seq] (Submitter supplied) Stimulus-specific gene expression programs are enabled by enhancers, on which stimulus-regulated transcription factors (SRTFs) can land in a cell type- and stimulus-dependent manner. In this study, we identified the key features of enhancers that mediate differential responses to Toll-like receptor (TLR)-stimulation. We characterized the TLR3- and TLR9-induced programs and enhancers in CD8+ dendritic cells.The relevance of these features has been confirmed via machine learning application and by mapping SRTF-binding. Organism: Mus musculus Type: Other Platform: GPL17021 2 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417847 Series Accession: GSE106743 ID: 200106743 2147. Epigenomics and Single-cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis [ATAC-seq] (Submitter supplied) Langerhans cell histiocytosis (LCH) is a rare neoplasm predominantly affecting children. It occupies a characteristic hybrid position between cancers and inflammatory diseases, which makes it an attractive model for studying cancer development. To explore the molecular mecha-nisms underlying the pathophysiology of LCH and its characteristic clinical heterogeneity, we investi-gated the transcriptomic and epigenomic diversity in primary LCH lesions. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BW, CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133785/ Series Accession: GSE133785 ID: 200133785 2148. Epigenomics and Single-cell Sequencing Define a Developmental Hierarchy in Langerhans Cell Histiocytosis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 13 Samples FTP download: GEO (BW, H5, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133706/ Series Accession: GSE133706 ID: 200133706 2149. Hand2 selectively reorganizes chromatin accessibility to induce pacemaker-like transcriptional reprogramming (RNA-seq) (Submitter supplied) Gata4, Mef2c, Hand2, and Tbx5 (GHMT) can reprogram transduced fibroblasts into induced pacemaker-like myocytes (iPMs), but the underlying mechanisms remain obscure. Here we explored the role of Hand2 in iPM formation by using a combination of transcriptome, genome, and biochemical assays. We found many shared transcriptional signatures between iPMs and endogenous sinoatrial node (SAN), yet key regulatory networks remain missing. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511670 Series Accession: GSE124337 ID: 200124337 2150. Hand2 selectively reorganizes chromatin accessibility to induce pacemaker-like transcriptional reprogramming (ATAC-seq) (Submitter supplied) Gata4, Mef2c, Hand2, and Tbx5 (GHMT) can reprogram transduced fibroblasts into induced pacemaker-like myocytes (iPMs), but the underlying mechanisms remain obscure. Here we explored the role of Hand2 in iPM formation by using a combination of transcriptome, genome, and biochemical assays. We found many shared transcriptional signatures between iPMs and endogenous sinoatrial node (SAN), yet key regulatory networks remain missing. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511669 Series Accession: GSE124336 ID: 200124336 2151. Heterozygous mutations in SMARCA2 lead to impaired neurogenesis due to global retargeting of SMARCA4 (Submitter supplied) Mammalian SWI/SNF complexes are multi-subunit chromatin remodeling complexes associated with an ATPase, either SMARCA4 or SMARCA2. Heterozygous mutations in the SMARCA2 ATPase cause Nicolaides-Baraitser Syndrome (NCBRS), an intellectual disability syndrome associated with delayed speech onset. We engineered human embryonic stem cells (hESCs) to carry NCBRS-associated heterozygous SMARCA2 K755R or R1159Q mutations. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL18573 81 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505818 Series Accession: GSE122631 ID: 200122631 2152. Accessible chromatin profiles of intestinal epithelial cells upon HNF4 loss in embryos by ATAC-seq (Submitter supplied) HNF4 paralogs are redundantly required for proper villus elongation, differentiation and maturation in the developing gut. We find 5,391 chromatin regions become inaccessible upon HNF4 loss, and HNF4 binding sequences are most enriched in these regions. Genes nearby these 5,391 HNF4 dependent regions are associated with villus differentiation/maturation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 3 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528484 Series Accession: GSE128674 ID: 200128674 2153. Pioneer and nonpioneer factor cooperation drives lineage specific chromatin opening [ATAC-seq] (Submitter supplied) Pioneer transcription factors are coined as having the unique property of “opening closed chromatin sites” for implementation of cell fates. We previously showed that the pioneer Pax7 specifies melanotrope cells through deployment of an enhancer repertoire: this allows binding of Tpit, a nonpioneer factor that determines the related lineages of melanotropes and corticotropes. Here, we investigated the relation between these two factors in the pioneer mechanism. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 17 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA517139 Series Accession: GSE125668 ID: 200125668 2154. Cannabinoid exposure in rat adolescence reprograms the initial behavioral, molecular, and epigenetic response to cocaine (Submitter supplied) This dataset includes ATAC-Seq and RNA-seq data from rat prefrontal cortex and/or nucleus accumbens (postnatal date, PND 61), as part of characterizing how the rat brain responds to its first encounter with cocaine (PND 60) with or without preexposure to the synthetic cannabinoid WIN 55,212-2 (WIN) during adolescence (PND 42-52). WIN was administered twice daily during the latter eleven consecutive days (2 mg/kg, 3 days; 4 mg/kg, 4 days; 8 mg/kg, 4 days) and, following a week of WIN abstinence, animals were IP challenged with cocaine (10 mg/kg). more... Organism: Rattus norvegicus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL14844 GPL20084 22 Samples FTP download: GEO (BED, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA556851 Series Accession: GSE134935 ID: 200134935 2155. Pre-marked chromatin and transcription factor co-binding shape the pioneering activity of Foxa2 [ATAC-seq] (Submitter supplied) Pioneer transcription factors (PTF) can recognize their binding sites on nucleosomal DNA and trigger chromatin opening for recruitment of other non-pioneer transcription factors. However, critical properties of PTFs are still poorly understood, such as how can these transcription factors selectively recognize cell type-specific binding sites and under which conditions can they initiate chromatin remodelling. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 18 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477871 Series Accession: GSE116255 ID: 200116255 2156. ATAC-seq, ChIP-seq and RNA-seq of breast cancer cell lines post ligand treatment (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL20301 145 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117943/ Series Accession: GSE117943 ID: 200117943 2157. ATAC-seq of MCF-7 cells post ligand treatment (Submitter supplied) Goal: study the impact of estrogen receptor ligands on chromatin accessibility in MCF-7 cells Methods: Assay for Transposase-Accessible Chromatin using Sequencing (ATAC-Seq) Results: Ligand 4-OH tamoxifen, a selective ER modulator (SERM), significantly alters chromatin accessibility and partially mimics the effect of natural ligand E2 on chromatin accessibility in MCF-7 breast cells. Selective ER degraders (SERD) fulvestrant and GDC-0927 on the other hand have very little impact on chromatin accessibility. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 18 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA483774 Series Accession: GSE117940 ID: 200117940 2158. Systematic Discovery and Characterization of Chromatin States and Butyrate-induced Variations for Cattle Genome Functional Annotation [dataset 3] (Submitter supplied) In this study, we generated four ATAC-seq data that were colloced from Rumen Epithelial Primary Cells (REPC) before and after (24h) butytate treatment. By combining other types of data sets, inclduing six histone modifications, RNA polymerase II, CTCF-binding sites, DNA methylation and RNA-seq, we established the first global map of regulatory elements (15 chromatin states) and defined their coordinated activities in cattle. more... Organism: Bos taurus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23055 4 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531214 Series Accession: GSE129418 ID: 200129418 2159. Vitamin C-dependent lysine demethylase 6 (KDM6)-mediated demethylation promotes a chromatin state that supports the endothelial-to-hematopoietic transition (Submitter supplied) Hematopoietic stem cells (HSCs)/progenitor cells (HPCs) are generated from hemogenic endothelial cells (HECs) during the endothelial-to-hematopoietic transition (EHT); however, the underlying mechanism remains poorly understood. Here, using an array of approaches, including CRSPR/Cas9 gene knockouts, RNA-Seq, ChIP-Seq, ATAC-Seq etc., we report that vitamin C (Vc) is essential in HPC generation during human pluripotent stem cell (hPSC) differentiation in defined culture conditions. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA549250 Series Accession: GSE132833 ID: 200132833 2160. Spatiotemporal pattern of the transcriptional regulatory landscape of the mouse ventricle after myocardial infarction (Submitter supplied) Stress-response gene activity replaces cardiomyocyte lineage-specific program in a transcriptionally discrete infarct border zone Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 36 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433175 Series Accession: GSE110209 ID: 200110209 2161. CHD1 functions as a prostate-specific tumor suppressor by modulating nuclear receptor specificity towards distinct, lineage-specific, enhancers (Submitter supplied) Deregulation of chromatin architecture is emerging as a critical feature of carcinogenesis, and genomic alterations in nucleosome remodelers are common in human cancer. Recurrent deletion of the chromatin remodeler CHD1 is among the most common alterations in prostate cancer, but its role as a tumor suppressor and the reasons for the tissue-specific nature of CHD1 deletion remain undefined. Here, we show that deletion of CHD1 drives prostate tumorigenesis and fundamentally reprograms the transcriptional program of the androgen receptor (AR), diverting AR towards an oncogenic transcriptional program and away from a growth suppressive transcriptome. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123333/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA508376 Series Accession: GSE123333 ID: 200123333 2162. ATAC-seq profiling of control or Ptpn2-null P14 CD8+ T-cell subsets from mice chronically infected with LCMV clone 13 (Submitter supplied) Chromatin accessibility profiling of CD8+ T cells in chronic LCMV Clone 13 infected mice depleted of CD4+ T cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE134nnn/GSE134385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554959 Series Accession: GSE134385 ID: 200134385 2163. ATAC-Seq examining the TFH and TEFF primed in Wild-type and IL6 KO mice (Submitter supplied) The goal of this study was to determine if there were differences in chromatin accessiblity between TFH and TEFF developing in Wild-type and IL6 KO mice Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA512613 Series Accession: GSE124588 ID: 200124588 2164. Kdm6b is Required for Self-Renewal of Normal and Leukemic Stem Cells Under Proliferative Stress (Submitter supplied) Recent studies have indicated that the histone 3 lysine 27 (H3K27me2/3) demethylase KDM6B (JMJD3) is frequently upregulated in a myriad of blood disorders including myelodysplastic syndrome (MDS), T-cell acute lymphoblastic leukemia (T-ALL), and multiple myeloma (MM) suggesting it may have important functions in the pathogenesis of hematopoietic cancers. Here, we sought to determine the role of Kdm6b in hematopoietic stem cell (HSC) fate decisions under normal and malignant conditions to evaluate its potential as a therapeutic target. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 20 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433558 Series Accession: GSE110378 ID: 200110378 2165. PAX5 belongs to a functional transcription factor network commonly targeted in B-lineage leukemia (Submitter supplied) One of the most frequently mutated proteins in human B-lineage leukemia is the transcription factor PAX5 mutated in about one third of all cases. While reduced function of PAX5 has a clear link to human malignancy there is limited evidence for that the this directly impact the development of function of B-cell progenitors. One possible explanation to this comes from the finding that PAX5 mutated B-ALL display complex karyotypes and additional mutations. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 22 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521494 Series Accession: GSE126300 ID: 200126300 2166. Allele-specific NKX2-5 binding underlies multiple genetic associations with human electrocardiographic traits (Submitter supplied) We conducted a genome-wide analysis to identify regulatory variants affecting the binding of NKX2-5, a core cardiac development transcription factor, and investigated their role in cardiac gene expression and EKG phenotypes. We generated iPSC-derived cardiomyocytes (iPSC-CMs) from a pedigree of seven whole-genome sequenced individuals, and profiled them with a variety of functional genomic assays including RNA-Seq, ATAC-Seq, and ChIP-Seq of both histone modification H3K27ac and NKX2-5. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL20301 32 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA554117 Series Accession: GSE133833 ID: 200133833 2167. Profiling chromatin state by single-cell itChIP-seq [ATAC-seq] (Submitter supplied) We present a low-cost, generalizable ChIP-seq (itChIP), compatible to both low-input and single cells for profiling chromatin states. This method combines chromatin opening, simultaneous cellular indexing and chromatin tagmentation in a single tube. Single-cell itChIP data yield ~ 5000 unique reads per cell, sufficiently defining cell identifies and subpopulations of a given cell type. Our results demonstrate that itChIP is a generalizable technology for single-cell chromatin profiling of samples limited to ultra-low number of cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431984 Series Accession: GSE109760 ID: 200109760 2168. An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 30 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121566/ Series Accession: GSE121566 ID: 200121566 2169. An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice (ATAC-seq) (Submitter supplied) Evolutionary studies are often limited by missing data that are critical to understanding the history of selection. Selection experiments, which reproduce rapid evolution under controlled conditions, are excellent tools to study how genomes evolve under selection. Here we present a genomic dissection of the Longshanks selection experiment, in which mice were selectively bred over 20 generations for longer tibiae relative to body mass, resulting in 13% longer tibiae in two replicates. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 3 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497802 Series Accession: GSE121565 ID: 200121565 2170. An integrative genomic analysis of the Longshanks selection experiment for longer limbs in mice (4C-seq) (Submitter supplied) Evolutionary studies are often limited by missing data that are critical to understanding the history of selection. Selection experiments, which reproduce rapid evolution under controlled conditions, are excellent tools to study how genomes evolve under selection. Here we present a genomic dissection of the Longshanks selection experiment, in which mice were selectively bred over 20 generations for longer tibiae relative to body mass, resulting in 13% longer tibiae in two replicates. more... Organism: Mus musculus Type: Other Platform: GPL21493 27 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497803 Series Accession: GSE121564 ID: 200121564 2171. Chromatin structure dynamics during human cardiomyocyte differention reveals a role of HERV-H in demarcating TAD boundaries. (Submitter supplied) The three-dimensional chromatin architecture plays a critical role in the establishment of cell-type-specific gene regulatory networks in eukaryotic cells. How pluripotent stem cells (PSC) alter their chromatin architecture to direct cell fate specification remains to be elucidated. Here, using a human PSC cardiomyocyte differentiation model, we analyze the dynamic reorganization of chromatin structure and gene regulatory networks during key transitional stages of cardiomyocyte development. more... Organism: Pan troglodytes; Homo sapiens; Callithrix jacchus; Pan paniscus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 5 related Platforms 115 Samples FTP download: GEO (BW, HIC, RPKM, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116862/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA480492 Series Accession: GSE116862 ID: 200116862 2172. A homeostatic Arid1a-dependent permissive chromatin state licenses hepatocyte responsiveness to liver injury-associated YAP signaling (ATAC-seq) (Submitter supplied) Following injury, differentiated epithelial cells can serve as a stem cell-independent source for tissue regeneration by undergoing reprogramming into other cell types. The intrinsic molecular basis underlying plasticity of differentiated cells remains largely unaddressed. Here we show that Arid1a, a key component of the SWI/SNF chromatin remodeling complex, controls liver regeneration and gene expression associated with emergence of injury-induced progenitor-like cells (LPLCs). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 11 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437239 Series Accession: GSE111499 ID: 200111499 2173. Sox7 regulates lineage decisions in cardiovascular progenitor cells (Submitter supplied) Specification of the mesodermal lineages requires a complex set of morphogenetic events orchestrated by interconnected signaling pathways and gene regulatory networks. The transcription factor Sox7 has critical functions in differentiation of multiple mesodermal lineages, including cardiac, endothelial, and hematopoietic. Using a doxycycline-inducible mouse embryonic stem cell (mESC) line, we have previously shown that expression of Sox7 in cardiovascular progenitor cells promotes expansion of endothelial progenitor cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 21 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA552913 Series Accession: GSE133899 ID: 200133899 2174. Dysregulation of PDGFRB contributes to the pathogenesis of LMNA-related dilated cardiomyopathy [ChIP-seq] (Submitter supplied) Purpose: LMNA-DCM accounts for 5-10% of DCM cases and has an age-related penetrance whose onset typically appears between the ages of 30 and 40. However, the precise mechanisms linking the LMNA mutation to increased arrhythmogenicity are still unknown. Methods: We utilized human iPSC-CMs RNA-seq, ChIP-seq, and ATAC-seq technologies. Results: The electrophysiological studies of iPSC-CMs identify the LMNA mutation as a cause of increased arrhythmogenicity in mutant iPSC-CMs through abnormal calcium homeostasis. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 10 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA487117 Series Accession: GSE118884 ID: 200118884 2175. Dysregulation of PDGFRB contributes to the pathogenesis of LMNA-related dilated cardiomyopathy [ATAC-seq] (Submitter supplied) Purpose: LMNA-DCM accounts for 5-10% of DCM cases and has an age-related penetrance whose onset typically appears between the ages of 30 and 40. However, the precise mechanisms linking the LMNA mutation to increased arrhythmogenicity are still unknown. Methods: We utilized human iPSC-CMs RNA-seq, ChIP-seq, and ATAC-seq technologies. Results: The electrophysiological studies of iPSC-CMs identify the LMNA mutation as a cause of increased arrhythmogenicity in mutant iPSC-CMs through abnormal calcium homeostasis. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA487112 Series Accession: GSE118883 ID: 200118883 2176. Dysregulation of PDGFRB contributes to the pathogenesis of LMNA-related dilated cardiomyopathy [RNA-seq] (Submitter supplied) Purpose: LMNA-DCM accounts for 5-10% of DCM cases and has an age-related penetrance whose onset typically appears between the ages of 30 and 40. However, the precise mechanisms linking the LMNA mutation to increased arrhythmogenicity are still unknown. Methods: We utilized human iPSC-CMs RNA-seq, ChIP-seq, and ATAC-seq technologies. Results: The electrophysiological studies of iPSC-CMs identify the LMNA mutation as a cause of increased arrhythmogenicity in mutant iPSC-CMs through abnormal calcium homeostasis. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL21697 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA487109 Series Accession: GSE118882 ID: 200118882 2177. Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics During Cardiac Reprogramming [scRNA-seq] (Submitter supplied) To determine the molecular mechanisms by which expression of Gata4, Mef2c, and Tbx5 (GMT) induces direct reprogramming from a cardiac fibroblast toward an induced cardiomyocyte, we performed a comprehensive transcriptomic and epigenomic interrogation of the reprogramming process. Single cell RNA sequencing indicated that a reprogramming trajectory was acquired within 48 hours of GMT introduction, did not require cell division, and was limited mainly by successful expression of GMT. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 7 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE133nnn/GSE133452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA551476 Series Accession: GSE133452 ID: 200133452 2178. Tox reinforces the phenotype and longevity of exhausted T-cells in chronic viral infection [Bisulfite-Seq] (Submitter supplied) Chronic CD8 T-cell stimulation in persisting infections or tumors can induce a stable gene expression program, known as T-cell dysfunction or exhaustion, that limits the cell’s effector functions and anti-viral and anti-tumor immunity. Thus far, the underlaying molecular mechanisms that induce and stabilize this phenotype are vaguely understood. We report here that establishing this program requires the thymocyte selection-associated high mobility group-box protein (Tox). more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL24247 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544262 Series Accession: GSE131642 ID: 200131642 2179. Tox reinforces the phenotype and longevity of exhausted T-cells in chronic viral infection [ATAC-seq] (Submitter supplied) Chronic CD8 T-cell stimulation in persisting infections or tumors can induce a stable gene expression program, known as T-cell dysfunction or exhaustion, that limits the cell’s effector functions and anti-viral and anti-tumor immunity. Thus far, the underlaying molecular mechanisms that induce and stabilize this phenotype are vaguely understood. We report here that establishing this program requires the thymocyte selection-associated high mobility group-box protein (Tox). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544256 Series Accession: GSE131638 ID: 200131638 2180. Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics During Cardiac Reprogramming [ChIP-Seq] (Submitter supplied) To determine the molecular mechanisms by which expression of Gata4, Mef2c, and Tbx5 (GMT) induces direct reprogramming from a cardiac fibroblast toward an induced cardiomyocyte, we performed a comprehensive transcriptomic and epigenomic interrogation of the reprogramming process. Single cell RNA sequencing indicated that a reprogramming trajectory was acquired within 48 hours of GMT introduction, did not require cell division, and was limited mainly by successful expression of GMT. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 33 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543258 Series Accession: GSE131327 ID: 200131327 2181. Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics During Cardiac Reprogramming [SF.ATAC-seq] (Submitter supplied) To determine the molecular mechanisms by which expression of Gata4, Mef2c, and Tbx5 (GMT) induces direct reprogramming from a cardiac fibroblast toward an induced cardiomyocyte, we performed a comprehensive transcriptomic and epigenomic interrogation of the reprogramming process. Single cell RNA sequencing indicated that a reprogramming trajectory was acquired within 48 hours of GMT introduction, did not require cell division, and was limited mainly by successful expression of GMT. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 27 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA541499 Series Accession: GSE130808 ID: 200130808 2182. Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics During Cardiac Reprogramming [ATAC-seq] (Submitter supplied) To determine the molecular mechanisms by which expression of Gata4, Mef2c, and Tbx5 (GMT) induces direct reprogramming from a cardiac fibroblast toward an induced cardiomyocyte, we performed a comprehensive transcriptomic and epigenomic interrogation of the reprogramming process. Single cell RNA sequencing indicated that a reprogramming trajectory was acquired within 48 hours of GMT introduction, did not require cell division, and was limited mainly by successful expression of GMT. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 36 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA541493 Series Accession: GSE130806 ID: 200130806 2183. Context-Specific Transcription Factor Functions Regulate Epigenomic and Transcriptional Dynamics During Cardiac Reprogramming [RNA-Seq] (Submitter supplied) To determine the molecular mechanisms by which expression of Gata4, Mef2c, and Tbx5 (GMT) induces direct reprogramming from a cardiac fibroblast toward an induced cardiomyocyte, we performed a comprehensive transcriptomic and epigenomic interrogation of the reprogramming process. Single cell RNA sequencing indicated that a reprogramming trajectory was acquired within 48 hours of GMT introduction, did not require cell division, and was limited mainly by successful expression of GMT. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 39 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540506 Series Accession: GSE130515 ID: 200130515 2184. KDM2 proteins constrain transcription from CpG island gene promoters independently of their histone demethylase activity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 176 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126864/ Series Accession: GSE126864 ID: 200126864 2185. KDM2 proteins constrain transcription from CpG island gene promoters independently of their histone demethylase activity [ATAC-seq] (Submitter supplied) CpG islands (CGI) are associated with the majority of mammalian gene promoters and function to recruit chromatin modifying enzymes. It has therefore been proposed that CGIs regulate gene expression through chromatin-based mechanisms, however in most cases this has not been directly tested. Here, we reveal that the histone H3 lysine 36 (H3K36) demethylase activity of the CGI-binding KDM2 proteins contributes only modestly to the H3K36me2-depleted state at CGI-associated gene promoters and is dispensable for normal gene expression. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 52 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126863/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523566 Series Accession: GSE126863 ID: 200126863 2186. Dysregulation of PDGFRB contributes to the pathogenesis of LMNA-related dilated cardiomyopathy (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21697 22 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118885/ Series Accession: GSE118885 ID: 200118885 2187. Chromatin accessibility maps of muscle infiltrating macrophages. (Submitter supplied) Genome-wide chromatin accessibility maps of muscle infiltrating macrophages isolated at day 1 to 4 following acute sterile cardiotoxin injury. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531162 Series Accession: GSE129393 ID: 200129393 2188. Genome-wide discovery of daily transcriptome, cis-regulatory elements and transcription factor footprints in the monarch butterfly brain (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danaus plexippus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25611 39 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122447/ Series Accession: GSE122447 ID: 200122447 2189. Genome-wide discovery of daily transcriptome, cis-regulatory elements and transcription factor footprints in the monarch butterfly brain [ATAC-Seq] (Submitter supplied) The Eastern North American monarch butterfly, Danaus plexippus, is notorious for its spectacular seasonal long-distance migration. In recent years, it has also emerged as a novel system to study how animal circadian clocks keep track of time and regulate ecologically relevant daily rhythmic activities and seasonal behavioral outputs. However, unlike Drosophila and the mouse, little work has been undertaken in the monarch to identify clock-controlled output genes and elucidate the regulation of their rhythmic expression. more... Organism: Danaus plexippus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL25611 7 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505263 Series Accession: GSE122445 ID: 200122445 2190. Genome-wide discovery of daily transcriptome, cis-regulatory elements and transcription factor footprints in the monarch butterfly brain [RNA-Seq] (Submitter supplied) The Eastern North American monarch butterfly, Danaus plexippus, is notorious for its spectacular seasonal long-distance migration. In recent years, it has also emerged as a novel system to study how animal circadian clocks keep track of time and regulate ecologically relevant daily rhythmic activities and seasonal behavioral outputs. However, unlike Drosophila and the mouse, little work has been undertaken in the monarch to identify clock-controlled output genes and elucidate the regulation of their rhythmic expression. more... Organism: Danaus plexippus Type: Expression profiling by high throughput sequencing Platform: GPL25611 32 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122442/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505262 Series Accession: GSE122442 ID: 200122442 2191. Identification and mitigation of pervasive off-target activity in CRISPR-Cas9 screens for essential non-coding elements (Submitter supplied) Pooled CRISPR-Cas9 screens have recently emerged as a powerful method for functionally characterizing regulatory elements in the non-coding genome, but off-target effects in these experiments have not been systematically evaluated. Here, we conducted multiple genome-scale CRISPR screens for essential CTCF loop anchors in the human K562 erythroid cell line. Surprisingly, the primary drivers of apparent ``hits'' in this screen were single guide RNAs (sgRNAs) with low sequence specificity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL18573 104 Samples FTP download: GEO (BEDGRAPH, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131349/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543320 Series Accession: GSE131349 ID: 200131349 2192. Human Thoracic Duct Lymph Contains Circulatory Intermediates T Follicular Helper Cells [ATAC-Seq] (Submitter supplied) T follicular helper CD4 T cells (Tfh) provide requisite help to B cells in the germinal centers (GC) of lymphoid tissue. GC Tfh are identified by high expression of the chemokine receptor CXCR5 and the inhibitory molecule PD-1. Although more accessible, blood contains lower frequencies of CXCR5+ and PD-1+ cells that have been termed circulating Tfh (cTfh). However, it remains unclear whether GC Tfh exit lymphoid tissues and populate this cTfh pool. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA541434 Series Accession: GSE130791 ID: 200130791 2193. Ikaros prevents autoimmunity by promoting anergy induction and restraining Toll-like receptor signaling in B cells (Submitter supplied) Establishment of a diverse B-cell receptor (BCR) repertoire by V(D)J recombination generates autoreactive B-cells that are eliminated by central tolerance in the bone marrow or down-regulate their BCR responsiveness to self-antigen during anergy induction in peripheral B-cells. The loss of anergy combined with hyperactivation of nucleic acid-sensing Toll-like receptors (TLRs) is thought to break B-cell tolerance leading to autoimmunity, although the transcriptional factors controlling these processes are still unknown. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 40 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA504619 Series Accession: GSE122313 ID: 200122313 2194. NF-Y controls fidelity of transcription initiation at gene promoters through maintenance of the nucleosome-depleted region (Submitter supplied) Faithful transcription initiation is critical for accurate gene expression, yet the mechanisms underlying specific transcription start site (TSS) selection in mammals remain unclear. Here, we show that the histone-fold domain protein NF-Y, a ubiquitously expressed transcription factor, controls the fidelity of transcription initiation at gene promoters. We report that NF-Y maintains the region upstream of TSSs in a nucleosome-depleted state while simultaneously protecting this accessible region against aberrant and/or ectopic transcription initiation. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 29 Samples FTP download: GEO (BEDGRAPH, BIGWIG, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473812 Series Accession: GSE115110 ID: 200115110 2195. Paf1C regulates RNA polymerase II progression by modulating elongation rate (Submitter supplied) Elongation factor Paf1C regulates several stages of the RNA polymerase II (Pol II) transcription cycle, although it is unclear how it modulates Pol II distribution and progression in mammalian cells. We found that conditional ablation of Paf1 resulted in the accumulation of unphosphorylated and Ser5 phosphorylated Pol II around promoter proximal regions and within the first 20-30 kb of gene bodies, respectively. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL17021 GPL19057 66 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477543 Series Accession: GSE116169 ID: 200116169 2196. Study of MeCP2 in LUHMES-derived neurons (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL11154 136 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125660/ Series Accession: GSE125660 ID: 200125660 2197. Study of MeCP2 binding and accessibity of chromatin in absence and presence of MeCP2 using ATAC-seq (Submitter supplied) ATAC-seq was performed to study changes in chromatin openness in the MeCP2 knock-outs and overexpressions. Additionally data was used to visualise the foorprint of MeCP2 bound to chromatin in vivo. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 13 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA517118 Series Accession: GSE125658 ID: 200125658 2198. Neuropeptide CGRP limits ILC2 responses and constrains type 2 inflammation (Submitter supplied) Innate and adaptive lymphocytes work in concert to maintain tissue homeostasis and to mediate host defense at mucosal barriers. Herein, we used single cell analysis to show substantial diversity of gene expression in ILCs and T helper cells during a helminth infection in the lung. Notably, we found that the Calca gene, which is spliced to generate the neuropeptide CGRP, was selectively transcribed in ILC2s and Th2 cells in an activation dependent manner. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 54 Samples FTP download: GEO (BW, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545529 Series Accession: GSE131996 ID: 200131996 2199. Muscle stem cell function (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129280/ Series Accession: GSE129280 ID: 200129280 2200. Glucose metabolism drives epigenetic landscape transitions that dictate muscle stem cell function (Submitter supplied) We report the application of chromatin immunoprecpitation (ChIP) and assay for transposase accessible chromatin (ATAC) followed by sequencing to assay chromatin response to metabolic perturbation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA530679 Series Accession: GSE129259 ID: 200129259 2201. Pioneer factor-nucleosome binding events during differentiation are motif-encoded (Submitter supplied) Though the in vitro structural and in vivo spatial characteristics of transcription factor (TF) binding are well defined, TF interactions with chromatin and other companion TFs during development are poorly understood. To analyze such interactions in vivo, we profiled several TFs across a time course of human embryonic stem cell differentiation via CUT&RUN epigenome profiling, and studied their interactions with nucleosomes and co-occurring TFs by Enhanced Chromatin Occupancy (EChO), a computational strategy for classifying TF binding characteristics across time and space. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL16791 109 Samples FTP download: GEO (BED, DOCX, RTF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA527856 Series Accession: GSE128499 ID: 200128499 2202. Integrative vascular endothelial cell genomics identify AIDA as a coronary artery disease candidate gene (ATACseq) (Submitter supplied) Genome-wide association studies (GWAS) have identified 100s of loci associated with coronary artery disease (CAD) and blood pressure (BP)/hypertension. Many of these loci are not associated with traditional risk factors, nor include obvious candidate genes, complicating their functional characterization. We hypothesized that many GWAS loci associated with vascular diseases modulate endothelial functions. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (BED, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521272 Series Accession: GSE126196 ID: 200126196 2203. ATACseq profiling of various TOX+ and TOX- tumor-infiltrating CD8 T cells (Submitter supplied) TOX is selectively expressed in tumor-infiltrating CD8 T cells however the role of TOX in peripheral CD8 T cells is not known. The goal of this study is to elucidate changes in chromatin accessibility determined by ATAC-seq between TOX-sufficient and TOX-deficient tumor infiltrating CD8 T cells isolated from murine tumors. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523939 Series Accession: GSE126970 ID: 200126970 2204. Histone ChIP-seq and ATAC-seq of dendritic cell progenitors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 15 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132241/ Series Accession: GSE132241 ID: 200132241 2205. ATAC-seq of dendritic cell progenitors (Submitter supplied) Induction of the transcription factor Irf8 in the common dendritic cell progenitor (CDP) is required for classical type 1 dendritic cell (cDC1) fate specification, but the mechanisms controlling this induction are unclear. Here we identified Irf8 enhancers and used CRISPR/Cas9 genome editing to assess their roles in Irf8 regulation. An enhancer 32 kilobases downstream  of the Irf8 transcriptional start site (+32 kb Irf8) that was active in mature cDC1s was required for the development of this lineage, but not for its specification. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA546582 Series Accession: GSE132240 ID: 200132240 2206. Open chromatin in Sox2-EGFP-sorted cells of the embryonic mouse cochlear duct (Submitter supplied) Hearing loss is often due to the absence or the degeneration of hair cells in the cochlea. Understanding the mechanisms regulating the generation of hair cells may therefore lead to better treatments for hearing disorders. To elucidate the transcriptional control mechanisms specifying the progenitor cells (i.e. prosensory cells) that generate the hair cells and support cells critical for hearing function, we compared chromatin accessibility using ATAC-seq in sorted prosensory cells (Sox2-EGFP+) and surrounding cells (Sox2-EGFP-) from E12, E14.5 and E16 cochlear ducts. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 9 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544803 Series Accession: GSE131775 ID: 200131775 2207. Genomic analyses of primary mouse prostate organoid culture with overexpression of FOXA1 (Submitter supplied) Mutations in the FOXA1 transcription factor define a unique subset of prostate cancers but the functional consequences of these mutations and whether they confer gain or loss of function is unknown. By annotating the FOXA1 mutation landscape from 3086 human prostate cancers, we define two hotspots in the forkhead domain: Wing2 (~50% of all mutations) and R219 (~5%), a highly conserved DNA contact residue. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA529188 Series Accession: GSE128867 ID: 200128867 2208. p63 cooperates with CTCF to modulate chromatin accessibility and architecture in skin keratinocytes (Submitter supplied) Here we integrated multi-omics profiles including transcriptomics, DNA accessibility and capture Hi-C data to explore how p63 shapes local chromatin architecture in skin keratinocytes isolated from EEC syndrome patients. Surprisingly, we observed decreased chromatin accessibility in a number of DNA looping nodes which were co-mediated by p63 and CTCF. Our findings not only identified a new aspect of the bookmark function of p63, but also shed light on the disease mechanism underlined p63 dysfunction. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509627 Series Accession: GSE123711 ID: 200123711 2209. Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13222 GPL17639 GPL21785 39 Samples FTP download: GEO (BED, BW, FPKM_TRACKING, NARROWPEAK, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123263/ Series Accession: GSE123263 ID: 200123263 2210. Arabidopsis SWR1-associated protein methyl-CpG-binding domain 9 is required for histone H2A.Z deposition. [ATAC-Seq] (Submitter supplied) Deposition of histone variant H2A.Z by the SWR1 chromatin-remodeling complex is critical for the appropriate expression of many genes in eukaryotes, yet, despite its importance, the composition of the Arabidopsis SWR1 complex has not been thoroughly analyzed. Here we have identified the interacting partners of a conserved Arabidopsis SWR1 subunit, actin-related protein 6 (ARP6). We isolated 9 predicted components, identifying subunits implicated in histone acetylation and interacting partners implicated in chromatin biology. more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13222 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA507973 Series Accession: GSE123257 ID: 200123257 2211. Identification of novel regulators of Th2 cells in HDM model (ATAC-Seq) (Submitter supplied) Naïve CD4 T cells differentiate into functionally diverse subsets of T helper (Th) cells. Gene expression profiling has the capacity to pinpoint factors that regulate subset differentiation and function, however obtaining transcriptional profiles of pure populations has been challenging. We performed single cell RNA-Sequencing (scRNA-Seq) of T helper cells from lymph node, lung and airways in a mouse model of asthma. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545349 Series Accession: GSE131937 ID: 200131937 2212. TOX Transcriptionally and Epigenetically Programs CD8 T cell Exhaustion [WT vs TOX-KO ATAC-Seq] (Submitter supplied) Transcriptional and epigenetic features were detected in WT versus TOX-/- P14 T cells following 8 days of Cl-13 infection and in in vitro differentiated CD8 T cells or NIH3T3 fibroblasts following retroviral transduction with control or TOX Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA549657 Series Accession: GSE132986 ID: 200132986 2213. TOX Transcriptionally and Epigenetically Programs CD8 T cell Exhaustion [CT vs TOX ATAC-Seq CD8] (Submitter supplied) Transcriptional and epigenetic features were detected in WT versus TOX-/- P14 T cells following 8 days of Cl-13 infection and in in vitro differentiated CD8 T cells or NIH3T3 fibroblasts following retroviral transduction with control or TOX Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA549658 Series Accession: GSE132983 ID: 200132983 2214. ATAC sequencing and RNA sequencing of L4-L6 mouse Dorsal Root Ganglia upon dorsal column axotomy plus injection of the histone deacetylase inhibitor MS275 (Submitter supplied) Purpose: compare the response of DRG neurons to a central axonal injury in presence of histone deacetylase inhibitor by measuring accessible chromatin and transcription Results: we found that MS-275 was able to induce changes in chromatin accessibility and gene expression. In particular, an increased accessibility correlated with changes in gene expression, and a decreased accessibility correlated with gene downregulation Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA547783 Series Accession: GSE132382 ID: 200132382 2215. CXCR4 signaling directs Igk recombination and the molecular mechanisms of late B lymphopoiesis (Submitter supplied) In B lymphopoiesis, activation of the pre-B cell antigen receptor (pre-BCR) is associated with both cell cycle exit and Igk recombination. Yet, how the pre-BCR mediates these functions remains unclear. Herein, we demonstrate that the pre-BCR initiates a feed-forward IRF4-CXC Receptor 4 (CXCR4) amplification loop. ERK activation by CXCR4 then directs the development of small and immature B cells including orchestrating cell cycle exit, pre-BCR repression, Igk recombination and BCR expression. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 26 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA530792 Series Accession: GSE129311 ID: 200129311 2216. Induction of Pluripotency by Alternative Factors (RNA-Seq) (Submitter supplied) Reprogramming somatic cells to pluripotency represents a paradigm for cell fate determination. A binary logic of closing and opening chromatin provides a simple way to understand iPSC reprogramming driven by both Yamanaka factors or chemicals. Here we apply this logic to the design a seven factor combination, Jdp2, Jhdm1b, Mkk6, Glis1, Nanog, Essrb and Sall4 (7F), that reprogram MEFs to chimera competent iPSCs efficiently. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 68 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA525825 Series Accession: GSE127927 ID: 200127927 2217. Induction of Pluripotency by Alternative Factors (ATAC-Seq) (Submitter supplied) Reprogramming somatic cells to pluripotency represents a paradigm for cell fate determination. A binary logic of closing and opening chromatin provides a simple way to understand iPSC reprogramming driven by both Yamanaka factors or chemicals. Here we apply this logic to the design a seven factor combination, Jdp2, Jhdm1b, Mkk6, Glis1, Nanog, Essrb and Sall4 (7F), that reprogram MEFs to chimera competent iPSCs efficiently. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 34 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA525822 Series Accession: GSE127926 ID: 200127926 2218. Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2 [ATAC-Seq] (Submitter supplied) Oct4, along with Sox2 and Klf4 (SK), can induce pluripotency but structurally similar factors like Oct6 cannot. To decode why Oct4 has this unique ability, we compare Oct4-binding, accessibility patterns and transcriptional waves with Oct6 and an Oct4 mutant defective in the dimerization with Sox2 (Oct4defSox2). We find that initial silencing of the somatic program proceeds indistinguishably with or without Oct4. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 12 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489174 Series Accession: GSE119396 ID: 200119396 2219. Assessing chromatin accessibility in WT and STAT4-/- ILC1s (Submitter supplied) STAT4 dynamically interacts with the genomic landscape and functions in modulating chromatin accessibility to influence gene expression. We aimed to evaluate the impact of STAT4 on chromatin accessibility of colonic lamina propria ILC1s. To address this aim, we sorted ILC1s from the colonic LP of unmanipulated C57BL/6 and STAT4-/- mice and performed the assay for transposase-accessible chromatin using sequencing (ATAC-seq). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548943 Series Accession: GSE132769 ID: 200132769 2220. ATAC-seq analysis in bone marrow LSK cells in WT, G12D, Ezh2-KO and G12D with Ezh2-KO (G12D_Ezh2-KO) mice (Submitter supplied) Epigenetic gene regulation and metabolism are highly intertwined, yet little is known whether and how altered epigenetics influences cellular metabolism in cancer progression. Here we show that EZH2 and NRasG12D mutations cooperatively induce progression of myeloproliferative neoplasms to fully penetrant, transplantable and lethal myeloid leukemias in mouse. EZH1, an EZH2 homolog, is indispensable for EZH2-deficient leukemia-initiating cells (LICs) and constitutes an epigenetic vulnerability. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545887 Series Accession: GSE132077 ID: 200132077 2221. Reverse gene-environment interaction approach to identify variants influencing body mass index in humans (Submitter supplied) Here we derive candidate gene-environment interaction (GxE) variants from promoter-enhancer interacting regions that respond to dietary fatty acid challenge through altered chromatin accessibility in human primary adipocytes, and demonstrate that molecular genomics data produced in physiologically relevant contexts can illuminate new functional GxE mechanisms in humans and identify variants for GxE testing in large biobanks. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL20301 8 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531837 Series Accession: GSE129574 ID: 200129574 2222. Epigenomic and transcriptomic analysis of bone marrow LSK cells in WT, G12D, Ezh2-KO, and G12D with Ezh2-KO mice (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 60 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112995/ Series Accession: GSE112995 ID: 200112995 2223. Epigenetic signature of PD-1+ TCF1+ CD8 T cells thatact as resource cells during chronic viral infectionand respond to PD-1 blockade (Submitter supplied) We have recently defined a novel population of PD-1+TCF1+virus-specific CD8 T cells that function as resource cells during chronic LCMV infection and provide the proliferative burst seen after PD-1 blockade. Such CD8 T cells have been found in other chronic infections and also in cancer in mice and humans. These CD8 T cells exhibit stem-like properties undergoing self-renewal and also giving rise to the terminally differentiated (exhausted) CD8 T cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA545961 Series Accession: GSE132110 ID: 200132110 2224. Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [CUT&RUN] (Submitter supplied) Mutations in gene regulatory elements have been associated with a wide range of complex neuropsychiatric disorders. However, due to their cell-type specificity and difficulties in characterizing their regulatory targets, the ability to identify causal genetic variants has remained limited. To address these constraints, we perform an integrative analysis of chromatin interactions, open chromatin regions and transcriptomes using promoter capture Hi-C, assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) and RNA sequencing, respectively, in four functionally distinct neural cell types: induced pluripotent stem cell (iPSC)-induced excitatory neurons and lower motor neurons, iPSC-derived hippocampal dentate gyrus-like neurons and primary astrocytes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 6 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521322 Series Accession: GSE126211 ID: 200126211 2225. Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL20301 GPL24676 39 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113483/ Series Accession: GSE113483 ID: 200113483 2226. Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [RNA-Seq] (Submitter supplied) Mutations in gene regulatory elements have been associated with a wide range of complex neuropsychiatric disorders. However, due to their cell-type specificity and difficulties in characterizing their regulatory targets, the ability to identify causal genetic variants has remained limited. To address these constraints, we perform an integrative analysis of chromatin interactions, open chromatin regions and transcriptomes using promoter capture Hi-C, assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) and RNA sequencing, respectively, in four functionally distinct neural cell types: induced pluripotent stem cell (iPSC)-induced excitatory neurons and lower motor neurons, iPSC-derived hippocampal dentate gyrus-like neurons and primary astrocytes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 10 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451218 Series Accession: GSE113482 ID: 200113482 2227. Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [PCHiC] (Submitter supplied) Mutations in gene regulatory elements have been associated with a wide range of complex neuropsychiatric disorders. However, due to their cell-type specificity and difficulties in characterizing their regulatory targets, the ability to identify causal genetic variants has remained limited. To address these constraints, we perform an integrative analysis of chromatin interactions, open chromatin regions and transcriptomes using promoter capture Hi-C, assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) and RNA sequencing, respectively, in four functionally distinct neural cell types: induced pluripotent stem cell (iPSC)-induced excitatory neurons and lower motor neurons, iPSC-derived hippocampal dentate gyrus-like neurons and primary astrocytes. more... Organism: Homo sapiens Type: Other Platforms: GPL20301 GPL24676 12 Samples FTP download: GEO (TXT, VCF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451216 Series Accession: GSE113481 ID: 200113481 2228. Mapping cis-regulatory chromatin contacts in neural cells links neuropsychiatric disorder risk variants to target genes [ATAC-seq] (Submitter supplied) Mutations in gene regulatory elements have been associated with a wide range of complex neuropsychiatric disorders. However, due to their cell-type specificity and difficulties in characterizing their regulatory targets, the ability to identify causal genetic variants has remained limited. To address these constraints, we perform an integrative analysis of chromatin interactions, open chromatin regions and transcriptomes using promoter capture Hi-C, assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) and RNA sequencing, respectively, in four functionally distinct neural cell types: induced pluripotent stem cell (iPSC)-induced excitatory neurons and lower motor neurons, iPSC-derived hippocampal dentate gyrus-like neurons and primary astrocytes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24676 GPL20301 11 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451217 Series Accession: GSE113480 ID: 200113480 2229. Single-cell transcriptomic analysis of tissue resident memory T cells in human lung cancer [ATAC-Seq] (Submitter supplied) High numbers of tissue-resident memory T (TRM) cells have been associated with better clinical outcomes in cancer patients. However, the molecular characteristics that drive their efficient immune response to tumors are poorly understood. Here, using single-cell and bulk transcriptomic analysis of purified populations of TRM and non-TRM cells we characterise these populations Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL24676 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA517712 Series Accession: GSE125858 ID: 200125858 2230. IFN-γ selectively suppresses a subset of TLR4-activated genes and enhancers to potentiate M1-like macrophage polarization [ATAC-seq] (Submitter supplied) Complete polarization of macrophages towards an M1-like proinflammatory and antimicrobial state requires combined action of IFN-γ and LPS. Synergistic activation of canonical inflammatory NF-κB target genes by IFN-γ and LPS is well appreciated, but less is known about whether IFN-γ negatively regulates components of the LPS response, and how this affects polarization. A combined transcriptomic and epigenomic approach revealed that IFN-γ selectively abrogates LPS-induced feedback and select metabolic pathways by suppressing TLR4-mediated activation of gene enhancers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA495073 Series Accession: GSE120942 ID: 200120942 2231. Estrogen-independent molecular actions of mutant estrogen receptor alpha in endometrial cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL16791 58 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132430/ Series Accession: GSE132430 ID: 200132430 2232. Estrogen-independent molecular actions of mutant estrogen receptor alpha in endometrial cancer [ATAC-seq] (Submitter supplied) Estrogen receptor alpha (ESR1) mutations have been identified in hormone therapy resistant breast cancer and primary endometrial cancer. Analyses in breast cancer suggests that mutant ESR1 exhibits estrogen independent activity. In endometrial cancer, ESR1 mutations are associated with worse outcomes and less obesity, however experimental investigation of these mutations has not been performed. Using a unique CRISPR/Cas9 strategy, we introduced the D538G mutation, a common endometrial cancer mutation that alters the ligand binding domain of ESR1, while epitope tagging the endogenous locus. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA548065 Series Accession: GSE132424 ID: 200132424 2233. IFN-γ selectively suppresses a subset of TLR4-activated genes and enhancers to potentiate M1-like macrophage polarization (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL20301 57 Samples FTP download: GEO (BIGWIG, TAB, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120945/ Series Accession: GSE120945 ID: 200120945 2234. 2-hydroxyglutarate inhibits transcription factor mediated differentiation by preventing H3K9 demethylation (Submitter supplied) ATAC-seq associates impairment of myogenic differentiation in cells with an IDH2 mutation with differences in chromatin accessibility. Differences are especially apparent in regions flanking binding sites for myogenic regulatory factors and key myogenesis noncoding RNA linc-MD1. Oncogenic IDH1/2 mutations produce 2-hydroxyglutarate (2HG), resulting in competitive inhibition of DNA and protein demethylation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 29 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA485652 Series Accession: GSE118440 ID: 200118440 2235. H3.3 phosphorylation promotes enhancer acetylation and lineage specification [ATAC-seq] (Submitter supplied) H3.3 phosphorylation promotes high levels of histone acetylation in mouse embryonic stem cells, which are central to the initiation of new transcription during lineage specification. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471719 Series Accession: GSE114547 ID: 200114547 2236. ATACseq and RNAseq of haemogenic and aortic endothelium in zebrafish embryos 28-20 hours post fertilization (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21741 GPL20828 37 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132260/ Series Accession: GSE132260 ID: 200132260 2237. ATACseq of haemogenic and aortic endothelium in zebrafish embryos 28-20 hours post fertilization (Submitter supplied) The goal of this study is to analyse the open chromatin regions via ATACseq in different sub-types of the zebrafish embryonic dorsal aorta (DA) at 28-30 hpf using TgBAC(runx1P2:Citrine);Tg(kdrl:mCherry) double-transgenic zebrafish embryos. 2000-3000 cells were FAC-sorted directly into 100 µl of 1x HBSS/10 mM HEPES/0.25% BSA buffer for Tagmentation (as described by Buenrostro et al. (2013), Nat. Methods 10, 1213-1218), but with 1.5 µl Tn5 transposase (Illumina) in a 50 µl reaction volume. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 16 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE132nnn/GSE132258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA547065 Series Accession: GSE132258 ID: 200132258 2238. Robust hematopoietic specification requires the ubiquitous Sp1 and Sp3 transcription factors [ATAC-Seq] (Submitter supplied) Development requires the cooperation of tissue-specific and ubiquitously expressed transcription factors, such as Sp-family members. However, the molecular details of how ubiquitous factors participate in developmental processes are still unclear. We previously showed that during the differentiation of embryonic stem cells lacking Sp1 DNA binding activity (Sp1deltaDBD/deltaDBD cells), early blood progenitors are formed. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 28 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA522080 Series Accession: GSE126493 ID: 200126493 2239. EOMES-dependent epigenetic reprogramming during CD8 T cell development leads to acquisition of memory traits (ATAC-Seq) (Submitter supplied) Memory CD8 T cells have a unique ability to provide lifelong immunity against pathogens. Although memory features generally arise after a challenge with foreign antigen, naïve CD8 single positive (SP) thymocytes may already acquire phenotypic and functional characteristics of memory cells in response to cytokines such as interleukin-4. This process is associated with the induction of the T-box transcription factor Eomesodermin (EOMES). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL24247 4 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA514300 Series Accession: GSE124911 ID: 200124911 2240. Pioneer and repressive functions of p63 during embryonic ectoderm specification (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20828 GPL24776 GPL21741 26 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123059/ Series Accession: GSE123059 ID: 200123059 2241. Pioneer and repressive functions of p63 during embryonic ectoderm specification [ATAC-seq] (Submitter supplied) The transcription factor p63 is a master regulator of ectoderm development essential for epidermal specification. Although previous studies have highlighted the role of p63 triggering the epidermal transcriptomic program, its precise mechanism of target gene regulation in the complex context of a developing embryo remains poorly understood. Here, we used zebrafish embryos to analyze in vivo how p63 regulates the expression of its target genes during development. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21741 GPL20828 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA507428 Series Accession: GSE123056 ID: 200123056 2242. KLRG1 and NKp46 expressing CD117+ human innate lymphoid cell precursors are biased to ILC2 and ILC3, respectively (Submitter supplied) Recently, circulating multi- and uni-potent human ILC precursors (ILCP) have been found in a lymphocyte population that expresses CD117 and CD127 but lacks CRTH2 and NKp44. However, these ILCPs have not been extensively characterized. We performed an unbiased Hierarchical Stochastic Neighbor Embedding (HSNE) analysis of the phenotype of peripheral blood CD117+ ILCPs which revealed the presence of three major subsets: the first expressed NKp46, the second expressed both NKp46 and CD56, while the third expressed KLRG1. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510626 Series Accession: GSE124054 ID: 200124054 2243. Fucntional genetic variants mediate their regulatory effects through altered transcription factor binding. [ATAC-Seq] (Submitter supplied) The extensive molecular characterization of the transcriptional regulatory landscape within the LCLs of a 3-generation, 17-member kindred was performed to allow for the identification of functional variants. A variant associated with changes in multiple molecular phenotypes was selected for validation through precise CRISPR/Cas9 editing. Edited clones were subsequently tested for reconstitution of function through CRISPR/dCas9 targeted TF activation. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 34 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA482539 Series Accession: GSE117490 ID: 200117490 2244. De-differentiation by Adenovirus E1A Due to Inactivation of Hippo Pathway Effectors YAP and TAZ [RNA-seq] (Submitter supplied) Adenovirus-transformed cells have a de-differentiated phenotype. Eliminating E1A in transformed human embryonic kidney cells de-repressed ~2600 genes, generating a gene expression profile closely resembling mesenchymal stem cells (MSC). This was associated with a dramatic change in cell morphology from one with scant cytoplasm and a globular nucleus to one with increased cytoplasm, extensive actin stress fibers and actomyosin-dependent flattening against the substratum. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 23 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA534074 Series Accession: GSE130136 ID: 200130136 2245. De-differentiation by Adenovirus E1A Due to Inactivation of Hippo Pathway Effectors YAP and TAZ [ChIP-seq] (Submitter supplied) Adenovirus-transformed cells have a de-differentiated phenotype. Eliminating E1A in transformed human embryonic kidney cells de-repressed ~2600 genes, generating a gene expression profile closely resembling mesenchymal stem cells (MSC). This was associated with a dramatic change in cell morphology from one with scant cytoplasm and a globular nucleus to one with increased cytoplasm, extensive actin stress fibers and actomyosin-dependent flattening against the substratum. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 44 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA534076 Series Accession: GSE130135 ID: 200130135 2246. De-differentiation by Adenovirus E1A Due to Inactivation of Hippo Pathway Effectors YAP and TAZ [ATAC-seq] (Submitter supplied) Adenovirus-transformed cells have a de-differentiated phenotype. Eliminating E1A in transformed human embryonic kidney cells de-repressed ~2600 genes, generating a gene expression profile closely resembling mesenchymal stem cells (MSC). This was associated with a dramatic change in cell morphology from one with scant cytoplasm and a globular nucleus to one with increased cytoplasm, extensive actin stress fibers and actomyosin-dependent flattening against the substratum. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA534075 Series Accession: GSE130133 ID: 200130133 2247. Functional dissection of regulatory landscapes reveals non-essential and instructive roles of TADs in regulating gene expression [ATAC-Seq] (Submitter supplied) The genome is organized in megabase­sized three-dimensional units, called Topologically Associated Domains (TADs), that are separated by boundaries. TADs bring distant cis-regulatory elements into proximity, facilitated by the cooperative action of cohesin and the DNA binding factor CTCF. However, how TADs and their boundaries impinge on enhancer function remains an open question. Here, we investigate TAD function in vivo in mice at the Sox9/Kcnj locus. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA515755 Series Accession: GSE125292 ID: 200125292 2248. Nodal signaling maintains H3K18ac landscape to promote mesendodermal differentiation through TRIM33 (Submitter supplied) The epigenome of a cell is established and maintained by chromatin modifiers and remodelers, which are recruited to the chromatin by specific transcription factors. In this report, we show that nodal cross-talks with the epigenome through TRIM33-H3K18ac to mediate mesendodermal genes expression. The chromatin accessibility at mesendodermal genes depends on TRIM33. Moreover, histone acetylation is essential for TRIM33 recruitment to many nodal target genes involved in mesendodermal differentiation. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21273 23 Samples FTP download: GEO (WIG, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473998 Series Accession: GSE115169 ID: 200115169 2249. c-MYC drives neuroblastoma tumorigenesis and retinoic acid resistance in zebrafish [ATAC-Seq] (Submitter supplied) Neuroblastoma is an often intractable tumor that accounts for 15% of childhood cancer deaths. In addition to MYCN amplification in 20% of tumors, 11% express high levels of c-MYC (MYC) protein. To study this newly defined subgroup, we have created a novel transgenic zebrafish model in which overexpression of MYC in the peripheral sympathetic nervous system drives early-onset neuroblastoma. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388954 Series Accession: GSE99566 ID: 200099566 2250. Distruption of TOX and TOX2 transcription factors in CAR T cells limits T cell exhaustion [ATAC-Seq] (Submitter supplied) We comapre mRNA expression level TOX and TOX2 CAR TILS and WT CAR TILs Organism: Mus musculus Type: Genome variation profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540590 Series Accession: GSE130539 ID: 200130539 2251. DOT1L inhibition reveals a distinct class of enhancers dependent upon H3K79 methylation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL16791 63 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117865/ Series Accession: GSE117865 ID: 200117865 2252. DOT1L inhibition reveals a distinct subset of enhancers dependent on H3K79 methylation (ATAC-seq) (Submitter supplied) Enhancer elements are a key regulatory feature of many important genes. Several general features including the presence of specific histone modifications are used to demarcate potentially active enhancers. Here we reveal that putative enhancers marked with H3 lysine 79 (K79) di or trimethylation (me2/3) (which we name H3K79me2/3 enhancer elements or KEEs) can be found in multiple cell types. Mixed lineage leukemia gene (MLL) rearrangements (MLL-r) such as MLL-AF4 are a major cause of incurable acute lymphoblastic leukemias (ALL). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117862/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA483453 Series Accession: GSE117862 ID: 200117862 2253. Chromatin accessiblity in mouse thymic epithelial cells to determine active regulatory elements. (Submitter supplied) The thymus is the site of T cell development. Although much is known about the development and differentiation of the T lymphocyte compartment, less is known about the thymic epithelial cell (TEC). Foxn1 is critical for the development and function of the thymus. Here, we used ATAC-Seq to identify regions of accessible chromatin in TEC and keratinocytes of the skin to identify candidate active regulatory elements critical for tissue specific expression of Foxn1. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544109 Series Accession: GSE131595 ID: 200131595 2254. Intestinal stem cell differentiation is associated with dynamic changes in the chromatin landscape [atac-seq] (Submitter supplied) Genome-wide chromatin accessbilility data in 4 populations of intestinal epithelial cells defined by different levels of Sox9 expression. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA543575 Series Accession: GSE131440 ID: 200131440 2255. Unique Epigenetic Programming Distinguishes Regenerative Spermatogonial Stem Cells in the Developing Mouse Testis (ATAC-seq) (Submitter supplied) Background: Spermatogonial stem cells (SSCs) sustain the process of steady-state spermatogenesis in the mammalian testis, which is critical to the ongoing production of sperm and male fertility. SSCs can both self-renew to perpetuate the SSC population, and give rise to progenitors to propel the spermatogenic differentiation pathway. SSCs are detectable as a small subpopulation of undifferentiated spermatogonia that demonstrate regenerative capacity in a transplantation assay, and can be selectively recovered on the basis of expression of an Id4-eGfp sortable marker transgene. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544306 Series Accession: GSE131655 ID: 200131655 2256. AIBP-mediated Cholesterol Efflux Instructs Hematopoietic Stem and Progenitor Cell Fate (Submitter supplied) Hypercholesterolemia, the driving force of atherosclerosis, accelerates the expansion and mobilization of hematopoietic stem and progenitor cells (HSPCs). The molecular determinants connecting hypercholesterolemia with hematopoiesis are underexplored. Here we report that a novel somite-derived pro-hematopoietic cue, AIBP, orchestrates HSPC emergence from the hemogenic endothelium, a type of specialized endothelium manifesting hematopoietic potential. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA503977 Series Accession: GSE122204 ID: 200122204 2257. ATAC-seq of BCSCsSETD4 and BCSCsGFP (Submitter supplied) We report the ATAC-SEQ results of BCSCsSETD4 and BCSCsGFP. To explore epigenetic regulation mechnism in BCSC quiescence, Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-seq) were performed in BCSCsSETD4 and BCSCsGFP. Quiescent BCSCsSETD4 showed marked enrichment of H4K20me3 modifications relative to BCSCsGFP. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24676 2 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE131nnn/GSE131586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA544096 Series Accession: GSE131586 ID: 200131586 2258. RNA sequencing, chromatin accesibility and ChIP seq analysis of BAP1 -/- human liver organoids (Submitter supplied) Liver organoids were engineered by CRISPR/Cas9 to introduce mutation in the BAP1 gene and profiled for changes in RNA expression, chromatin accessibility and histone marks Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 20 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531430 Series Accession: GSE129457 ID: 200129457 2259. Decomposing cell identity for transfer learning across cellular measurements, platforms, tissues, and species. (Submitter supplied) Bulk ATAC-seq and RNA-seq on sorted retinal cells from Chx10:GFP reporter mice Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 25 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA487093 Series Accession: GSE118880 ID: 200118880 2260. Linking aberrant chromatin features in chronic lymphocytic leukemia to deregulated transcription factor networks (Submitter supplied) In chronic lymphocytic leukemia (CLL) a diverse set of genetic mutations is embedded in a deregulated epigenetic landscape that drives cancerogenesis. To elucidate the role of aberrant chromatin features, we mapped DNA methylation, 7 histone modifications, nucleosome positions, chromatin accessibility, binding of EBF1 and CTCF as well as the transcriptome of B cells from CLL patients and healthy donors. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL20301 GPL11154 519 Samples FTP download: GEO (BIGBED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113336/ Series Accession: GSE113336 ID: 200113336 2261. Epigenetic activation and memory at a TGFB2 enhancer in systemic sclerosis (Submitter supplied) Epigenetic activation of an enhancer for TGFB2 locks SSc patient fibroblasts into a pro-fibrotic synthetic state through mechanisms dependent on NF-kB and BRD4. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 24 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA535485 Series Accession: GSE130313 ID: 200130313 2262. Genome-wide strategies reveal downstream target genes of Npas4l associated with cardiovascular development in zebrafish [ATAC-Seq] (Submitter supplied) The development of a vascular network is essential to nourish tissues and sustain organ function throughout life. Endothelial cells (ECs) are the building blocks of blood vessels, yet our understanding of EC specification in vertebrates remains incomplete. cloche/npas4l mutants have broadly been used as an avascular model in zebrafish, but little is known about the molecular mechanism of action of Npas4l. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA534266 Series Accession: GSE130196 ID: 200130196 2263. Natural genetic variation reveals key features of epigenetic and transcriptional memory in virus-specific CD8 T cells (Submitter supplied) Stable changes in chromatin states and gene expression in cells of the immune system form the basis for their memory of infections and other challenges. We used naturally occurring cis-regulatory variation in wild-derived inbred mouse strains to explore the mechanisms underlying long-lasting vs. transient gene regulation in antigen-specific CD8 T cells responding to acute viral infection. Our observations provide novel insights into the mechanisms driving stable and reversible transcriptional and epigenetic memory in virus-specific CD8 T cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL21103 GPL17021 70 Samples FTP download: GEO (CNT, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523232 Series Accession: GSE126770 ID: 200126770 2264. The subtype-specific transcriptional regulatory networks of intestinal innate lymphoid cells (RNA-seq) (Submitter supplied) Innate lymphoid cells (ILCs) comprise a population of immune cells that promote tissue homeostasis, defense against infections, and inflammatory disease. Yet, the transcriptional control of these functions is not well understood. Here, we leverage an experimental-computational approach for transcriptional regulatory network (TRN) inference, recently validated in an in vitro context, to construct genome-scale TRNs for ILCs isolated ex vivo from the intestine of mice. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 44 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477002 Series Accession: GSE116092 ID: 200116092 2265. The subtype-specific transcriptional regulatory networks of intestinal innate lymphoid cells (ATAC-seq) (Submitter supplied) Innate lymphoid cells (ILCs) comprise a population of immune cells that promote tissue homeostasis, defense against infections, and inflammatory disease. Yet, the transcriptional control of these functions is not well understood. Here, we leverage an experimental-computational approach for transcriptional regulatory network (TRN) inference, recently validated in an in vitro context, to construct genome-scale TRNs for ILCs isolated ex vivo from the intestine of mice. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 23 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477001 Series Accession: GSE116091 ID: 200116091 2266. Targeting enhancer switching overcomes non-genetic drug resistance in acute myeloid leukaemia [ATAC-seq] (Submitter supplied) The prevailing model of therapeutic resistance in cancer posits that malignant cells acquire genetic mutations in the context of therapeutic pressure that negate the efficacy of the drug. This mutation centric view of therapeutic resistance has recently been challenged by emerging evidence that shows a paucity of genetic diversity in malignant cells that evade therapeutic challenge emphasizing the role of epigenetic evolution in drug resistance. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 11 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434776 Series Accession: GSE110900 ID: 200110900 2267. Genome-wide strategies reveal downstream target genes of Npas4l associated with cardiovascular development in zebrafish (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL20828 12 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130202/ Series Accession: GSE130202 ID: 200130202 2268. Single cell ATAC-seq identifies broad changes in neuronal abundance and gene regulation in Down Syndrome (Submitter supplied) To characterize cellular and molecular changes associated with Down Syndrome, we performed single-cell combinatorial indexing assay for transposase accessible chromatin using sequencing (sci-ATAC-seq) on cortices of adult Ts65Dn mice and control littermates. Analyses of 13,766 cells revealed 26 classes of cells in the cortices of both genotypes. The most abundant cells, a class of excitatory neurons, was reduced by (~17 %) in Ts65Dn mice; three of the four most common classes of interneurons were increased, with a total increase of ~50 % of all interneurons. more... Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL19415 8 Samples FTP download: GEO (NARROWPEAK, R, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE127nnn/GSE127257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA524534 Series Accession: GSE127257 ID: 200127257 2269. Inducible histone K-to-M mutations are dynamic tools to probe the physiological role of site-specific histone methylation in vitro and in vivo [RNA] (Submitter supplied) Here, we developed mouse models expressing inducible lysine to methionine mutants of histone H3, which function as dominant negative inhibitors of methylation at their respective sites. Upon induction of H3K9M or H3K36M, we observed potent differentiation defects in stem cells and regenerative tissues. This work covers RNA-seq and ATAC-seq in this model system. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126826/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523405 Series Accession: GSE126826 ID: 200126826 2270. Inducible histone K-to-M mutations are dynamic tools to probe the physiological role of site-specific histone methylation in vitro and in vivo [ATAC] (Submitter supplied) Here, we developed mouse models expressing inducible lysine to methionine mutants of histone H3, which function as dominant negative inhibitors of methylation at their respective sites. Upon induction of H3K9M or H3K36M, we observed potent differentiation defects in stem cells and regenerative tissues. This work covers RNA-seq and ATAC-seq in this model system. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523406 Series Accession: GSE126825 ID: 200126825 2271. Enhancement of direct reprogramming from fibroblasts to epithelial lineages by OVOL2-induced mesenchymal-to-epithelial transition (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 18 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122036/ Series Accession: GSE122036 ID: 200122036 2272. Enhancement of direct reprogramming from fibroblasts to epithelial lineages by OVOL2-induced mesenchymal-to-epithelial transition [ATAC-seq] (Submitter supplied) Mesenchymal-to-epithelial transition (MET) is an important step in cell reprogramming from fibroblast, a most frequently used cell type for this purpose, to various epithelial cell types. However, how MET can be induced in fibroblast has not been fully studied. In this study, we sought for transcription factors (TFs) that can efficiently induce MET in dermal fibroblasts and identified OVOL2 as a potent inducer of key epithelial genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA503199 Series Accession: GSE122035 ID: 200122035 2273. Chromatin accessibility of ex vivo derived Be-g2 cells (Submitter supplied) Naive B cells cultured in the presence of IL-2 and IFN-g (Be-g2) leads to a distinct programming outcome. To determine the epigenetic programming changes during Be-g2 differentiation ATAC-seq was performed on Be-0, Be-IL2, Be-IFNg, and Be-g2 cells. These data define the chromatin accessibility landscape of Be-g2 cells and the changes that occur during thier differentiation. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490144 Series Accession: GSE119726 ID: 200119726 2274. Epigenetic and Transcriptional signatures of Systemic Lupus Erythematosus B cell subsets (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL16791 225 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118256/ Series Accession: GSE118256 ID: 200118256 2275. Accessible chromatin profiles of B cell subsets from healthy and SLE subjects (Submitter supplied) SLE is characterized by the production of autoantibodies that arise from the B cell lineage. Therefore, we sought to assess the epigenetic and transcriptome profiles of distinct B cell subsets known to be expanded in SLE from healthy and SLE subjects. These data define the differentiation heirarchy of B cell subsets and the epigenetic and transcriptional consequences of SLE on human B cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 50 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484964 Series Accession: GSE118253 ID: 200118253 2276. Chromatin restriction by the nucleosome remodeler Mi-2β and functional interplay with lineage-specific transcription regulators controls B cell differentiation (Submitter supplied) Coordinated induction but also repression of genes is key to normal differentiation. Although the role of lineage-specific transcription regulators has been extensively studied, their functional integration with chromatin remodelers, one of the key enzymatic machineries that control chromatin accessibility, remains ill-defined. Here we investigate the role of Mi-2b, a SNF-2-like nucleosome remodeler and key component of the Nucleosome Remodeling Deacetylase (NuRD) complex in early B cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL13112 27 Samples FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA535487 Series Accession: GSE130315 ID: 200130315 2277. Gene transcription and chromatin accessibility of conventional NK cells and ILC1s in spleens of uninfected and Toxoplasma gondii-infected Mice (Submitter supplied) RNA sequencing and ATAC-seq of conventional NK cells and ILC1s in uninfected mice and mice that were infected 5 wk previously with the Type II Prugniaud strain of T. gondii Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21493 GPL17021 22 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511586 Series Accession: GSE124313 ID: 200124313 2278. ChIP-Seq and ATAC-Seq analysis for Hox protein binding in Drosophila Kc167 cells (Submitter supplied) Hox protein transcription factors specify segmental diversity along the anterior-posterior body axis in metazoans. Understanding the basis of Hox function has long faced the problem that, while the different members of the Hox family show clear functional specificity in vivo, they all show very similar binding specificity in vitro. Based on in vitro studies, Hox cofactors may increase Hox binding selectivity but a satisfactory understanding of in vivo Hox target selectivity is still lacking. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21306 GPL13304 141 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122575/ Series Accession: GSE122575 ID: 200122575 2279. Mapping chromatin accessibility in stable cell lines expressing Drosophila Hox proteins, Hox cofactors Extradenticle and Homothorax, and the pioneer factor Gcm [ATAC-seq] (Submitter supplied) We have used stable cell lines expressing selected Hox proteins, Hox cofactors and the pioneer factor Glial cells missing, singly or in combination, to investigate the effects on chromatin accessibility genome-wide using ATAC-Seq. Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21306 51 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505610 Series Accession: GSE122557 ID: 200122557 2280. Acetate promotes T cell effector function during glucose restriction (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 22 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128594/ Series Accession: GSE128594 ID: 200128594 2281. Acetate promotes T cell effector function during glucose restriction [ATAC-seq] (Submitter supplied) Competition for nutrients like glucose can metabolically restrict T cells and contribute to their hyporesponsiveness during cancer. Metabolic adaptation to the surrounding microenvironment is therefore key for maintaining appropriate cell function. For instance, cancer cells use acetate as a substrate alternative to glucose to fuel metabolism and growth. Here we show that acetate rescued effector function in glucose-restricted CD8+ T cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528258 Series Accession: GSE128592 ID: 200128592 2282. TCF-1 regulation of CD8+ T cell chromatin accessibility (Submitter supplied) CD8+ T cell differentiation traditionally results in the emergence of two subsets, Tc1 cells that produce interferon (IFN)-gamma and memory cells that mediate immune protection against pathogen infections. More recently, it has emerged that other specialized CD8+ T cell populations develop in immune responses and are critical to orchestrate complete immune protection. These subsets include tissue-resident memory (Trm) T cells, follicular cytotoxic T cells and two CD8+ T cell subsets that produce interleukin (IL)-17, namely, mucosal-associated invariant T (MAIT) cells and Tc17 cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490437 Series Accession: GSE119839 ID: 200119839 2283. Transcriptomic and Chromatin Landscape Analysis of Wild Type and FOXA2-/- ES-derived Pancreatic Progenitors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 106 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114102/ Series Accession: GSE114102 ID: 200114102 2284. Chromatin Landscape Analysis of Wild Type and FOXA2-/- ES-derived Pancreatic Progenitors (Submitter supplied) Chromatin Landscape Analysis of Wild Type and FOXA2-/- ES-derived Pancreatic Progenitors Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 14 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114101/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA464310 Series Accession: GSE114101 ID: 200114101 2285. Pervasive H3K27 acetylation leads to ERV expression and a therapeutic vulnerability in H3K27M gliomas [ATAC-seq] (Submitter supplied) Epigenetic alterations are recurrently observed in cancer and are the subject of active therapeutic investigations. Midline high-grade gliomas (HGGs) are deadly brain tumors characterized by lysine-to-methionine substitutions at position 27 in histone 3 (H3) variants (denoted H3K27M), which are core components of the nucleosome. H3K27M, the first event in midline HGG development, results in a drastic loss of the repressive histone mark H3K27 tri-methylation (H3K27me3), and a notable increase in H3K27 acetylation (H3K27ac), a mark associated with active chromatin and cellular identity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528664 Series Accession: GSE128744 ID: 200128744 2286. Profiling of chromatin accessibility and identification of general cis-regulatory mechanisms that control two ocular lens differentiation pathways (Submitter supplied) We performed ATAC-seq for microdissected lens epithelium and fiber from E14.5 and P0.5 mouse lenses.Through investigating dynamics of chromatin changes during mouse lens fiber and epithelium differentiation, we identified spatial-temporal differential accessible regions and the enriched known and novel motifs. We also discovered some novel and known enhancers for the transcription factors and structural genes that are important in lens development. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA512208 Series Accession: GSE124497 ID: 200124497 2287. A Preformed Chromatin Architecture Ensures Robust Shh Transcription during Limb Development [ATAC-seq] (Submitter supplied) During embryogenesis, enhancer-promoter interactions control gene transcriptional activation. These interactions can be tissue-specific or tissue-invariant and occur mostly within larger insulated regulatory domains called Topologically Associating Domains (TADs). Boundary elements, which delineate the extent of TADs, frequently interact with each other and have been associated with constitutive transcription and CTCF/Cohesin binding. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA508606 Series Accession: GSE123383 ID: 200123383 2288. ATAC-seq time course in mouse acute myeloid leukemia cells upon PU.1 restoration and knockdown (Submitter supplied) We have utilized advanced RNAi technology to dynamically restore and subsequently knock down endogenous PU.1 expression in p53-deficient AML cells, which respectively causes differentiation and de-differentiation Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA429218 Series Accession: GSE108944 ID: 200108944 2289. Transcription factor NKX3-1 is required for reprogramming to pluripotency and can replace OCT4 in mouse and human iPSC induction [ATAC-seq] (Submitter supplied) Resolution of early molecular events preceding endogenous OCT4 activation is critical to understanding the mechanism of reprogramming somatic cells to induced pluripotent stem cells (iPSCs), yet capturing transient regulators at the onset of reprogramming is difficult in heterogeneous populations of asynchronously reprogramming fibroblasts following four-factor transduction. To address this need, we used a heterokaryon system to identify an early and transiently expressed homeobox transcription factor, NKX3-1. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 7 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA401811 Series Accession: GSE103535 ID: 200103535 2290. Fine chromatin-driven mechanism of transcription interference by antisense noncoding transcription (Submitter supplied) Eukaryotic genomes are almost entirely scanned by RNA polymerase II (RNAPII). Consequently, the transcription of long noncoding RNAs (lncRNAs) often overlaps with coding gene promoters triggering potential gene repression through a poorly characterized mechanism of transcription interference. In this study, we propose a global model of chromatin-based transcription interference in Saccharomyces cerevisiae (S. more... Organism: Saccharomyces cerevisiae Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL21656 44 Samples FTP download: GEO (BIGWIG, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA542110 Series Accession: GSE130946 ID: 200130946 2291. Defining the dynamic chromatin landscape of nephron progenitors (Submitter supplied) Six2+ cap mesenchyme cells, also called nephron progenitor cells (NPC), are a multipotent stem cell population and precursors of all epithelial cell types of the nephron, the filtering unit of the kidney. In mammals, formation of new nephrons ceases perinatally associated with a surge in NPC differentiation. Current evidence indicates that perinatal “old” NPC have a greater tendency to exit the progenitor niche and differentiate into nascent nephrons than their embryonic “young” counterparts. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA513838 Series Accession: GSE124804 ID: 200124804 2292. Mammalian SWI/SNF collaborates with a polycomb-associated protein to regulate germ line transcription in the mouse [ATAC-seq] (Submitter supplied) ATAC-seq on spermatogenic cells from P12 and P18 testes Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA488361 Series Accession: GSE119176 ID: 200119176 2293. Lhx2 controls changes in chromatin accessibility in retinal progenitor cells during developmental competence transitions. (Submitter supplied) We profiled retinal progenitor cells by integrating next generation sequencing methods and interrogating changes in chromatin accessibility at embryonic and post-natal murine stages. We identified putative factors involved in the developmental progression of the retinal progenitors epigenome and we report Lhx2 role in the regulation of chromatin accessibility by coordinated action of developmentally regulated pioneer factors Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 16 Samples FTP download: GEO (XLS, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99818/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA389720 Series Accession: GSE99818 ID: 200099818 2294. Allelic specificity of IGH-DUX4 translocation in acute lymphoblastic leukemia (ALL) (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 6 Samples FTP download: GEO (BW, HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115494/ Series Accession: GSE115494 ID: 200115494 2295. Allelic specificity of IGH-DUX4 translocation in acute lymphoblastic leukemia (ALL) [ATAC-seq] (Submitter supplied) In Nalm6, allelic imbalance was found at IGH-DUX4 translocation locus from ATAC-seq data. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 1 Sample FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA475143 Series Accession: GSE115482 ID: 200115482 2296. Contrasting roles of transcription factors spineless and EcR in the highly dynamic chromatin landscape of butterfly wing metamorphosis (Submitter supplied) Background: We studied the chromatin accessibility landscsape in wings during butterfly metamorphosis, and investigate which transcription factors might be driving changes in accessibility Methods: We sequencing the Junonia coenia genome, and we studied chromatin accessibility using ATAC seq in multiple stages of wing development in both forewings and hindwings. For sites showing a large change in accessibility, we investigate which motifs are enriched, and correlate this with changes in gene expression of associated transcription factors. more... Organism: Junonia coenia Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23448 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497879 Series Accession: GSE121542 ID: 200121542 2297. Zfp281 shapes the transcriptome of trophoblast stem cells and is essential for placental development (Submitter supplied) Placental development is a key event in mammalian reproduction and embryogenesis. However, the molecular basis underlying extraembryonic lineage specification and subsequent placental development is not fully understood. Through a genetic screen, we identified Zfp281 as a key factor for extraembryonic development. Disruption of Zfp281 in mice caused severe defects in extraembryonic as well as embryonic tissues. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18480 GPL17021 GPL16791 26 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA438284 Series Accession: GSE111824 ID: 200111824 2298. FOXP2 regulates differential transcriptional programs in human subplate (Submitter supplied) Mammalian brains are highly conserved at both the neuroanatomical and gene expression levels. However, the subplate is a neocortical subregion distinguished by a markedly different developmental trajectory among primates compared to other mammals. Moreover, the molecular mechanisms driving these species differences in subplate development remain mostly unknown. Here, we show that human FOXP2, a transcription factor important for speech and language, regulates gene expression programs consistent with subplate neuron expression patterns. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 42 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111353/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA436813 Series Accession: GSE111353 ID: 200111353 2299. Chromatin organization in the female brain fluctuates across the estrous cycle (Submitter supplied) Brain structure and function are sexually dimorphic. As neuroscience research has largely focused on the male brain and behavior, the female brain and, in particular, its inherent dynamics have been left underexplored. During the mammalian reproductive period, the female brain is exposed to fluctuating hormone levels over the cycles known as menstrual (in humans) or estrous (in rodents). Variation in estradiol levels has been shown to affect synaptic plasticity in the female brain, including changes in dendritic spine density systematically across the estrous cycle. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL21103 18 Samples FTP download: GEO (NARROWPEAK, TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA459726 Series Accession: GSE114036 ID: 200114036 2300. ATAC-Me captures spatiotemporal dynamics of DNA methylation across the chromatin accessible genome (Submitter supplied) DNA methylation of enhancers is dynamic, cell-type specific, and vital for cell fate progression. However, current models inadequately define its role within the highly ordered steps of gene regulation. An analysis of independent datasets show an unanticipated overlap between DNA methylation and chromatin accessibility at enhancers of steady state stem cells, suggesting that two opposing features might exist concurrently. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing 4 related Platforms 26 Samples FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA533829 Series Accession: GSE130096 ID: 200130096 2301. Chromatin-informed inference of transcriptional programs in gynecologic cancers (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 30 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129339/ Series Accession: GSE129339 ID: 200129339 2302. Runx1 and Runx3 cooperatively repress Pmp22 to drive neurofibromagenesis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by array; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL570 17 Samples FTP download: GEO (CEL, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122777/ Series Accession: GSE122777 ID: 200122777 2303. Runx1 and Runx3 cooperatively repress Pmp22 to drive neurofibromagenesis [ATAC-seq] (Submitter supplied) Neurofibromatosis type 1 (NF1) patients are predisposed to develop neurofibromas but the underlying molecular mechanism(s) of neurofibromagenesis are not fully understood. We showed that dual genetic deletion of Runx1 (Rx1) and Runx3 (Rx3) in Schwann cells (SCs) and Schwann cell precursors (SCPs) significantly delayed neurofibromagenesis and prolonged mouse survival. We identified peripheral myelin protein 22 (Pmp22/Gas3) related to tumor initiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506265 Series Accession: GSE122776 ID: 200122776 2304. Chromatin-informed inference of transcriptional programs in gynecologic cancers [ATAC-Seq] (Submitter supplied) Epigenomic data on transcription factor occupancy and chromatin accessibility can elucidate the developmental origin of cancer cells and reveal the enhancer landscape of key oncogenic transcriptional regulators. However, in many cancers, epigenomic analyses have been limited, and computational methods to infer regulatory networks in tumors typically use expression data alone, or rely on transcription factor (TF) motifs in annotated promoter regions. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473349 Series Accession: GSE114964 ID: 200114964 2305. Hominid-specific transposable elements and KRAB-ZFPs facilitate human embryonic genome activation and transcription in naïve hESCs [ATAC-seq] (Submitter supplied) Transposable elements (TEs) are key to the evolutionary turnover of regulatory sequences. How they can play such an essential role in spite of their genotoxic potential is unknown. Here, we demonstrate that KRABcontaining zinc finger proteins control the timely and pleiotropic engagement of TE-derived cis-regulators of transcription. We first observed that evolutionary recent TEs of the SVA, HERVK and HERVH subgroups are major contributors to chromatin opening during human embryonic genome activation and act as KLF-stimulated enhancers in naïve embryonic stem cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 10 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE130nnn/GSE130418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA540225 Series Accession: GSE130418 ID: 200130418 2306. CHD4 is essential for transcriptional repression and lineage progression in B lymphopoiesis [ATAC-seq] (Submitter supplied) Cell-lineage specification is a tightly regulated process that is dependent on appropriate expression of lineage- and developmental stage-specific transcriptional programs. Accessibility and inaccessibility of gene loci are controlled dynamically during cellular development. Here, we show that Chromodomain Helicase DNA-binding protein 4 (CHD4), a major ATPase/helicase subunit of Nucleosome Remodeling and Deacetylase Complexes (NuRD) in lymphocytes, is essential for specification of the early B cell lineage transcriptional program. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA508955 Series Accession: GSE123503 ID: 200123503 2307. Contrasting roles of transcription factors spineless and EcR in the highly dynamic chromatin landscape of butterfly wing metamorphosis (Submitter supplied) Background: We studied the chromatin accessibility landscsape in wings during butterfly metamorphosis, and investigate which transcription factors might be driving changes in accessibility Methods: We sequencing the Junonia coenia genome, and we studied chromatin accessibility using ATAC seq in multiple stages of wing development in both forewings and hindwings. For sites showing a large change in accessibility, we investigate which motifs are enriched, and correlate this with changes in gene expression of associated transcription factors. more... Organism: Junonia coenia Type: Expression profiling by high throughput sequencing Platform: GPL23448 38 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA498283 Series Accession: GSE121734 ID: 200121734 2308. Transcriptomic and epigenetic regulation of hair cell regeneration in the mouse utricle and its potentiation by Atoh1 (Submitter supplied) The mammalian cochlea loses its ability to regenerate new hair cells prior to the onset of hearing. In contrast, the adult vestibular system can produce new hair cells in response to damage, or by reprogramming of supporting cells with the hair cell transcription factor Atoh1. We used RNA-seq and ATAC-seq to probe the transcriptional and epigenetic responses of utricle supporting cells to damage and Atoh1 transduction. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 15 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497870 Series Accession: GSE121610 ID: 200121610 2309. Contrasting roles of transcription factors spineless and EcR in the highly dynamic chromatin landscape of butterfly wing metamorphosis (Submitter supplied) Background: We studied the chromatin accessibility landscsape in wings during butterfly metamorphosis, and investigate which transcription factors might be driving changes in accessibility Methods: We sequencing the Junonia coenia genome, and we studied chromatin accessibility using ATAC seq in multiple stages of wing development in both forewings and hindwings. For sites showing a large change in accessibility, we investigate which motifs are enriched, and correlate this with changes in gene expression of associated transcription factors. more... Organism: Junonia coenia Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23448 24 Samples FTP download: GEO (BW, FA, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497878 Series Accession: GSE121541 ID: 200121541 2310. Hominid-specific transposable elements and KRAB-ZFPs facilitate human embryonic genome activation and transcription in naïve hESCs (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 79 Samples FTP download: GEO (BED, TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117395/ Series Accession: GSE117395 ID: 200117395 2311. Systematic functional characterization of BAF mutations yields novel intra-complex synthetic lethalities (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 162 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108390/ Series Accession: GSE108390 ID: 200108390 2312. Systematic functional characterization of BAF mutations yields novel intra-complex synthetic lethalities [ATAC-Seq] (Submitter supplied) Aberrations in genes coding for subunits of the BAF chromatin remodeling complex are highly abundant in human cancers. Currently, it is not understood how these loss-of-function mutations contribute to cancer development and how they can be targeted therapeutically. The cancer type specific occurrence patterns of certain subunit mutations suggest subunit-specific effects on BAF complex function, possibly by the formation of aberrant residual complexes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 74 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427145 Series Accession: GSE108386 ID: 200108386 2313. Epigenetic modulation of a hardwired 3D chromatin landscape in two naive states of pluripotency. (ATAC-seq) (Submitter supplied) The mechanisms underlying enhancer activation and the extent to which enhancer-promoter rewiring contributes to spatiotemporal gene expression are not well understood. Using integrative and time resolved analyses we show that the extensive transcriptome and epigenome resetting during the conversion between ‘serum-’ and ‘2i’-states of mouse embryonic stem cells (ESCs) takes place with minimal enhancer-promoter rewiring that becomes more evident in primed-state pluripotency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 23 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA357499 Series Accession: GSE92411 ID: 200092411 2314. TNF-induced Inflammatory Genes Escape Repression in Fibroblast-like Synoviocytes: Transcriptomic and Epigenomic Analysis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 17 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128645/ Series Accession: GSE128645 ID: 200128645 2315. TNF-induced Inflammatory Genes Escape Repression in Fibroblast-like Synoviocytes: Transcriptomic and Epigenomic Analysis [ATAC-seq] (Submitter supplied) Investigated genome-wide changes in gene-expression and chromatin remodeling induced by tumour necrosis factor (TNF) in fibroblast-like synovioctyes (FLS) and macrophages to understand the contribution of FLS to the pathogenesis of rheumatoid arthritis (RA). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE128nnn/GSE128644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA528326 Series Accession: GSE128644 ID: 200128644 2316. Tbet regulates the accessible chromatin of Be1 B cells (Submitter supplied) To investigate the role of Tbet in B cell differentiation to "effector-like" antibody secreting cells (ASC's) we utilized an ex vivo culture system to differentiate B cells in the presence of Th1 (Be1) or Th2 (Be2) polarized T cells. To determine the role of Tbet in Be1 cell differentiation we performed ATAC-seq on Wt Be1 and Tbet negative (TbetNeg) Be1 cells and Wt Be2 and Tbet negative (TbetNeg) Be2 cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA487609 Series Accession: GSE118984 ID: 200118984 2317. TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [Tet2-ChIP-seq] (Submitter supplied) TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). Here we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116207/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477782 Series Accession: GSE116207 ID: 200116207 2318. TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [H3K27ac_ChIP-seq] (Submitter supplied) TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). Here we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477776 Series Accession: GSE116206 ID: 200116206 2319. TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [BATF_ChIP-seq] (Submitter supplied) TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). Here we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 5 Samples FTP download: GEO (BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477777 Series Accession: GSE116205 ID: 200116205 2320. TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [RNA-seq] (Submitter supplied) TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). Here we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 20 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477778 Series Accession: GSE116204 ID: 200116204 2321. TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [ATAC-seq] (Submitter supplied) TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). Here we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. more... Organism: Mus musculus Type: Other Platform: GPL17021 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477774 Series Accession: GSE116203 ID: 200116203 2322. TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [BS-seq] (Submitter supplied) TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). Here we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL16417 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477775 Series Accession: GSE116202 ID: 200116202 2323. TET enzymes augment AID expression via 5hmC modifications at the Aicda superenhancer [CMS-IP] (Submitter supplied) TET enzymes are dioxygenases that promote DNA demethylation by oxidizing the methyl group of 5-methylcytosine (5mC) to 5-hydroxymethylcytosine (5hmC). Here we report a close correspondence between 5hmC-marked regions, chromatin accessibility and enhancer activity in B cells, and a strong enrichment for consensus binding motifs for basic region-leucine zipper (bZIP) transcription factors at TET-responsive genomic regions. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL17021 24 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA477773 Series Accession: GSE116201 ID: 200116201 2324. RNA-seq and ATAC-seq analysis of the role of PBRM1 under stress conditions (Submitter supplied) We used RNA-seq to characterize the contributions of PBRM1 to gene expression in NmuMG cells with and without oxidative or low-glucose stress conditions. Further, we used ATAC-seq to characterize the effects of PBRM1 on chromatin accessibility in HK-2 and NMuMG cell lines. Our analyses reveal a role for PBRM1 in expression of genes associated with stress responses and with specific transcription factor families, such as the FOXO family. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 30 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA453373 Series Accession: GSE113606 ID: 200113606 2325. ETV4 is necessary for estrogen signaling and growth in endometrial cancer cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 32 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129805/ Series Accession: GSE129805 ID: 200129805 2326. ETV4 is necessary for estrogen signaling and growth in endometrial cancer cells [ATAC-seq] (Submitter supplied) Estrogen signaling through estrogen receptor alpha (ER) plays a major role in endometrial cancer risk and progression; however, the molecular mechanisms underlying ER’s regulatory role in endometrial cancer are poorly understood. In breast cancer cells, ER genomic binding is enabled by FOXA1 and GATA3, but the transcription factors that control ER genomic binding in endometrial cancer cells remain unknown. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA532876 Series Accession: GSE129802 ID: 200129802 2327. PAD2-mediated citrullination contributes to efficient oligodendrocyte differentiation and myelination (Submitter supplied) Citrullination, the deimination of arginine residues into citrulline, has been implicated in the aetiology of several diseases. In multiple sclerosis (MS), citrullination is thought to be a major driver of pathology, through hypercitrullination and destabilization of myelin. As such, inhibition of citrullination has been suggested as a therapeutical strategy for MS. Here we show that citrullination by peptidylarginine deiminase 2 (PADI2) is in contrast required for normal oligodendrocyte differentiation, myelination and motor function. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL13112 8 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA476539 Series Accession: GSE115929 ID: 200115929 2328. Functional genomics of iMEF SDHC-loss stable line (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platform: GPL21103 68 Samples FTP download: GEO (BEDGRAPH, CSV, HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129956/ Series Accession: GSE129956 ID: 200129956 2329. MULTIPLE SCN5A ENHANCERS MODULATE CARDIAC GENE EXPRESSION AND QT INTERVAL VARIATION (Submitter supplied) Genome-wide association studies (GWAS) have suggested that sequence variation in cis-regulatory elements (CREs) modulate common disease risk and trait variation. However, identification of the majority of these causal variants and their mechanism of action have remained significant challenges. We used reporter assays for all common variants at the QT interval associated SCN5A GWAS locus with the goal of identifying causal variants for the association. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL16791 6 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431786 Series Accession: GSE109716 ID: 200109716 2330. Dynamic enhancer partitioning instructs Zdbf2 activation during epigenetic reprogramming [ATAC-Seq] (Submitter supplied) Early mammalian development is accompanied by a profound global remodeling of chromatin-based regulation. The Zdbf2 locus provides a valuable model to uncover the effect of dynamic chromatin transition, as it is polycomb silenced in embryonic stem cells (ESCs) and only becomes activated after Long isoform of Zdbf2 (Liz) transcription-dependent de novo DNA methylation during differentiation. Here we show that four enhancers contribute to the Liz-to-Zdbf2 promoter switch, concomitantly with dynamic changes in chromatin architecture. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497267 Series Accession: GSE121400 ID: 200121400 2331. Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors (RNA-seq data sets) (Submitter supplied) Remodelers define nucleosome composition, presence and position. Mammalian imitation-switch-type (ISWI) comprise one class, mostly relying on the ATPase Snf2h for activity. We show that embryonic stem cells are viable without Snf2h, enabling to study its function and contrast it to Brg1, the ATPase of SWI/SNF. Loss of Snf2h specifically affects nucleosomal positioning and increases linker lengths genome-wide providing in vivo evidence for ISWI function in ruling nucleosomal spacing. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 18 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445203 Series Accession: GSE112135 ID: 200112135 2332. Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors (MNase-seq data sets) (Submitter supplied) Remodelers define nucleosome composition, presence and position. Mammalian imitation-switch-type (ISWI) comprise one class, mostly relying on the ATPase Snf2h for activity. We show that embryonic stem cells are viable without Snf2h, enabling to study its function and contrast it to Brg1, the ATPase of SWI/SNF. Loss of Snf2h specifically affects nucleosomal positioning and increases linker lengths genome-wide providing in vivo evidence for ISWI function in ruling nucleosomal spacing. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445202 Series Accession: GSE112134 ID: 200112134 2333. Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors (HiC-seq data sets) (Submitter supplied) Remodelers define nucleosome composition, presence and position. Mammalian imitation-switch-type (ISWI) comprise one class, mostly relying on the ATPase Snf2h for activity. We show that embryonic stem cells are viable without Snf2h, enabling to study its function and contrast it to Brg1, the ATPase of SWI/SNF. Loss of Snf2h specifically affects nucleosomal positioning and increases linker lengths genome-wide providing in vivo evidence for ISWI function in ruling nucleosomal spacing. more... Organism: Mus musculus Type: Other Platform: GPL19057 8 Samples FTP download: GEO (BED, MATRIX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445201 Series Accession: GSE112133 ID: 200112133 2334. Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors (ChIP-seq data sets) (Submitter supplied) Remodelers define nucleosome composition, presence and position. Mammalian imitation-switch-type (ISWI) comprise one class, mostly relying on the ATPase Snf2h for activity. We show that embryonic stem cells are viable without Snf2h, enabling to study its function and contrast it to Brg1, the ATPase of SWI/SNF. Loss of Snf2h specifically affects nucleosomal positioning and increases linker lengths genome-wide providing in vivo evidence for ISWI function in ruling nucleosomal spacing. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 38 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445200 Series Accession: GSE112132 ID: 200112132 2335. Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors (Bis-seq data sets) (Submitter supplied) Remodelers define nucleosome composition, presence and position. Mammalian imitation-switch-type (ISWI) comprise one class, mostly relying on the ATPase Snf2h for activity. We show that embryonic stem cells are viable without Snf2h, enabling to study its function and contrast it to Brg1, the ATPase of SWI/SNF. Loss of Snf2h specifically affects nucleosomal positioning and increases linker lengths genome-wide providing in vivo evidence for ISWI function in ruling nucleosomal spacing. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platforms: GPL17021 GPL19057 4 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445196 Series Accession: GSE112131 ID: 200112131 2336. Mammalian ISWI and SWI/SNF selectively mediate binding of distinct groups of transcription factors (ATAC-seq data sets) (Submitter supplied) Remodelers define nucleosome composition, presence and position. Mammalian imitation-switch-type (ISWI) comprise one class, mostly relying on the ATPase Snf2h for activity. We show that embryonic stem cells are viable without Snf2h, enabling to study its function and contrast it to Brg1, the ATPase of SWI/SNF. Loss of Snf2h specifically affects nucleosomal positioning and increases linker lengths genome-wide providing in vivo evidence for ISWI function in ruling nucleosomal spacing. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 14 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445198 Series Accession: GSE112130 ID: 200112130 2337. Direct Induction of the Three Pre-Implantation Blastocyst Cell Types from Fibroblasts (Submitter supplied) ATAC-seq, RNA-seq and ChIP-seq in induced TSC and PSC 72 hours past Doxycyclin induction Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 63 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA384030 Series Accession: GSE98124 ID: 200098124 2338. Single cell lineage tracing by endogenous mitochondrial DNA mutations in ATAC-seq data [stem cells and blasts] (Submitter supplied) Simultaneous measurement of lineage relationship and information on cell fate is desireable for human tissues. Here we describe a new strategy to track cell lineage using endogenous mitochondrial DNA variants in ATAC-seq data, which simultaneously measures the chromatin profiling. We first provide a proof of principle that somatic mutations in the mitochondrial genome can be used as a genetic marker to depict cellular lineage relationships and further quantified the power of lineage definition with these genetic markers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 384 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505673 Series Accession: GSE122576 ID: 200122576 2339. Inhibition of MYC by the SMARCB1 tumor suppressor (Submitter supplied) We report that the protein encoded by the SMARCB1 gene, SNF5, is capable of inhibiting MYC binding in vitro and in a malignant rhabdoid tumor (MRT) cell line. By comparing the effects of reintroduction of SNF5 with genetic inhibition of MYC (OMOMYC) on multiple aspects of chromatin remodeling and transcription in MRT cells, we show that regulation of MYC binding by SNF5 is not connected to the role of SNF5 in chromatin remodeling, but instead is responsible for controlling RNA polymerase pause release during transcription. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL16791 30 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA430400 Series Accession: GSE109310 ID: 200109310 2340. Single-cell Transcriptomics Resolves Intermediate Glial Progenitors and Uncovers a Pivotal Determinant of Cell Fate and Gliomagenesis (Submitter supplied) The identity and heterogeneity of glial progenitors and their contributions to brain tumor malignancy remain elusive. By applying lineage-targeted single-cell-transcriptomics, we uncover an unanticipated diversity of glial progenitor pools with unique molecular identities in developing brain. Our analysis identifies distinct transitional intermediate states and their divergent developmental trajectories in astroglial and oligodendroglial lineages. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 229 Samples FTP download: GEO (BEDGRAPH, MTX, NARROWPEAK, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506723 Series Accession: GSE122871 ID: 200122871 2341. Single cell lineage tracing by endogenous mitochondrial DNA mutations in ATAC-seq data (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL15520 GPL20301 768 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122578/ Series Accession: GSE122578 ID: 200122578 2342. Single cell lineage tracing by endogenous mitochondrial DNA mutations in ATAC-seq data [HSC] (Submitter supplied) Simultaneous measurement of lineage relationship and information on cell fate is desireable for human tissues. Here we describe a new strategy to track cell lineage using endogenous mitochondrial DNA variants in ATAC-seq data, which simultaneously measures the chromatin profiling. We first provide a proof of principle that somatic mutations in the mitochondrial genome can be used as a genetic marker to depict cellular lineage relationships and further quantified the power of lineage definition with these genetic markers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL15520 384 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505672 Series Accession: GSE122577 ID: 200122577 2343. An inter-chromosomal transcription hub activates the unfolded protein response in plasma cells (Submitter supplied) Previous studies have indicated that the transcription signature of antibody-secreting cells is closely associated with the induction of the unfolded protein response pathway (UPR). Here we have used genome-wide and single cell analyses to examine the folding patterns of plasma cell genomes. We found that plasma cells adopt a cartwheel configuration and undergo large-scale changes in chromatin folding at genomic regions associated with a plasma cell specific transcription signature. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (BED, BEDGRAPH, TDF, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA449748 Series Accession: GSE113014 ID: 200113014 2344. Chromatin remodeling mediated by ARID1A is indispensable for normal hematopoiesis in mice (ATAC-Seq) (Submitter supplied) ARID1A is a component of the mammalian SWI/SNF complex involved in chromatin remodeling. A functional SWI/SNF complex is required for diverse physiological processes including hematopoiesis, however, the precise role played by ARID1A in hematopoietic development is unclear. Here we utilize hematopoietic cell-specific deletion of Arid1a in mice to uncover its role during adult hematopoiesis. We demonstrate that ARID1A is essential for maintaining the frequency and function of hematopoietic stem cells and its loss impaired the differentiation of both myeloid and lymphoid lineages. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA517698 Series Accession: GSE125844 ID: 200125844 2345. Transcriptional Down-regulation of CCR5 in a Subset of HIV+ Controllers (ATAC-Seq) (Submitter supplied) HIV+ Elite and Viremic controllers (EC/VCs) are able to control virus infection, perhaps because of host genetic determinants. We identified 16% (21 of 131) EC/VCs with CD4+ T cells with resistance specific to R5-tropic HIV, reversed after introduction of CCR5. R5 resistance was not observed in macrophages and depended upon the method of T cell activation. CD4+ T cells of these EC/VCs had lower CCR2 and CCR5 mRNA levels, reduced CCR2 and CCR5 cell-surface expression, and decreased levels of secreted chemokines. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA504632 Series Accession: GSE122322 ID: 200122322 2346. Transcriptional Down-regulation of CCR5 in a Subset of HIV+ Controllers (RNA-Seq) (Submitter supplied) HIV+ Elite and Viremic controllers (EC/VCs) are able to control virus infection, perhaps because of host genetic determinants. We identified 16% (21 of 131) EC/VCs with CD4+ T cells with resistance specific to R5-tropic HIV, reversed after introduction of CCR5. R5 resistance was not observed in macrophages and depended upon the method of T cell activation. CD4+ T cells of these EC/VCs had lower CCR2 and CCR5 mRNA levels, reduced CCR2 and CCR5 cell-surface expression, and decreased levels of secreted chemokines. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA504631 Series Accession: GSE122321 ID: 200122321 2347. ATAC-seq on human pancreatic islets (Submitter supplied) We have studied the impact of T2D on open chromatin in human pancreatic islets. We used assay for transposase-accessible chromatin using sequencing (ATAC-seq) to profile open chromatin in islets from T2D and non-diabetic donors. We identified ATAC-seq peaks representing open chromatin regions in islets of non-diabetic and diabetic donors. The majority of ATAC-seq peaks mapped near transcription start sites. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 15 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA531115 Series Accession: GSE129383 ID: 200129383 2348. Changes in chromatin accessibility and gene expression induced by overexpression of ONECUT transcription factors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Rattus norvegicus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL25584 GPL18573 40 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120131/ Series Accession: GSE120131 ID: 200120131 2349. Profiling of chromatin accessibility in fibroblasts, iPSCs, iPSC-derived neurons and cells overexpressing Onecut transcription factors (OC1, OC2, OC3) (Submitter supplied) Remodeling of chromatin accessibility is necessary for successful reprogramming of fibroblasts to neurons. However, it is still not fully known which transcription factors can induce a neuronal chromatin accessibility profile when overexpressed in fibroblasts. To identify such transcription factors, we here used ATAC-sequencing to generate differential chromatin accessibility profiles between human fibroblasts and iNeurons, an in vitro neuronal model system obtained by overexpression of Neurog2 in induced pluripotent stem cells (iPSCs). more... Organism: Homo sapiens; Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL25584 GPL18573 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491518 Series Accession: GSE120083 ID: 200120083 2350. PAN-INTACT enables isolation of lineage-specific nuclei from fibrous tissues (Submitter supplied) PAN-INTACT method can be used to isolate cell type specific nuclei from fibrous mouse organs, which are particularly problematic. It is broadly applicable for profiling the transcriptional and epigenetic landscape of specific cell types. We envision that our method can be used to systematically probe mechanistic details of cell type-specific functions within individual organs of intact mice. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490328 Series Accession: GSE119792 ID: 200119792 2351. MAPS: model-based analysis of long-range chromatin interactions from PLAC-seq and HiChIP experiments (Submitter supplied) Hi-C and chromatin immunoprecipitation (ChIP) have been combined to identify long-range chromatin interactions genome-wide at reduced cost and enhanced resolution, but extracting the information from the resulting datasets has been challenging. Here we describe a computational method, MAPS, Model-based Analysis of PLAC-seq and HiChIP, to process the data from such experiments and identify long-range chromatin interactions. more... Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL17021 10 Samples FTP download: GEO (BED, BW, HIC, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489882 Series Accession: GSE119663 ID: 200119663 2352. Engineering a haematopoietic stem cell niche by reprogramming mesenchymal stromal cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 22 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112233/ Series Accession: GSE112233 ID: 200112233 2353. Engineering a haematopoietic stem cell niche by reprogramming mesenchymal stromal cells (RNA-Seq) (Submitter supplied) Haematopoietic stem cells (HSCs) reside in bone marrow (BM) niches where they are maintained to replenish all blood cell lineages throughout life. Among the constituents of the murine HSC niches, various cell types such as CXCL12-abundant reticular (CAR) cells, Nestin-GFP+ perivascular cells, leptin receptor (LepR)+ cells, endothelial cells, osteoblasts, sympathetic nerves, macrophages and megakaryocytes in the BM have been proposed to contribute to HSC niche activity. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445310 Series Accession: GSE112232 ID: 200112232 2354. Engineering a haematopoietic stem cell niche by reprogramming mesenchymal stromal cells (ATAC-Seq) (Submitter supplied) Haematopoietic stem cells (HSCs) reside in bone marrow (BM) niches where they are maintained to replenish all blood cell lineages throughout life. Among the constituents of the murine HSC niches, various cell types such as CXCL12-abundant reticular (CAR) cells, Nestin-GFP+ perivascular cells, leptin receptor (LepR)+ cells, endothelial cells, osteoblasts, sympathetic nerves, macrophages and megakaryocytes in the BM have been proposed to contribute to HSC niche activity. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445309 Series Accession: GSE112231 ID: 200112231 2355. Genome-wide profiles of chromatin accessibility in spatially-restricted domains along the antero-posterior axis of Drosophila blastoderm (Submitter supplied) Establishment of spatial coordinates during early Drosophila embryogenesis relies on differential activity of axis patterning enhancers. Concentration gradients along the embryonic axes of activator and repressor transcription factors (TFs) provide positional information to each enhancer, which in turn promotes transcription of a target gene in a specific spatial pattern. In order to receive the TF input, an enhancer must be accessible. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19951 23 Samples FTP download: GEO (BW, GFF3) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484944 Series Accession: GSE118240 ID: 200118240 2356. TNF promotes SREBP activity to regulate macrophage polarization and tissue repair (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 GPL19057 46 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129229/ Series Accession: GSE129229 ID: 200129229 2357. TNF promotes SREBP activity to regulate macrophage polarization and tissue repair [ATAC-seq] (Submitter supplied) TNF-mediated macrophage polarization is important for inflammatory disease pathogenesis, but mechanisms that regulate polarization are not well understood. Transcriptomic and epigenomic analysis of the TNF response in primary human macrophages revealed late phase activation of SREBP2, the master regulator of cholesterol biosynthesis genes. TNF stimulation extended the genomic profile of SREBP2 occupancy to include binding to and activation of inflammatory and interferon response genes independently of its functions in sterol metabolism. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA530520 Series Accession: GSE129167 ID: 200129167 2358. Chromatin changes in lateral organ founder cells of Arabidopsis thaliana detected by assay for transposase-accessible chromatin sequencing (ATAC-seq) (Submitter supplied) Two methods Fluorescence Activated Cell Sorting (FACS) and Assay for Transposase-Accessible Chromatin with high-throughput sequencing (ATAC-seq) are combined to analyse the chromatin accessibility of Lateral Organ Founder Cells (LOFCs) in the peripheral zone of the apetala1 cauliflower double mutant Arabidopsis inflorescence meristem. Genome-wide we observed a striking correlation between Transposase Hypersensitive Sites (THS) detected in ATAC-seq and DNase I Hypersensitive Sites (DHS), covering mostly extended regions substructured into several individual THS that correspond to phylogenetically conserved sequence, enhancer elements and binding sites of MADS-box transcription factors. more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21785 8 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA480717 Series Accession: GSE116972 ID: 200116972 2359. Glucocorticoid Receptor Quaternary Structure Drives Chromatin Occupancy and Transcriptional Outcome (Submitter supplied) Most transcription factors, including nuclear receptors, are widely modeled as binding regulatory elements as monomers, homodimers, or heterodimers. Recent findings in live cells show that the glucocorticoid receptor (GR) forms tetramers on enhancers, due to an allosteric alteration induced by DNA binding, and suggest that higher oligomerization states are important for the gene regulatory responses of GR. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 GPL21103 83 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427922 Series Accession: GSE108634 ID: 200108634 2360. Leptin responsive neurons (Submitter supplied) Genome wide association studies (GWAS) in obesity have identified a large number of noncoding loci located near genes expressed in the central nervous system. However, due to the difficulties in isolating and characterizing specific neuronal subpopulations, very few obesity-associated SNPs have been functionally characterized. Leptin responsive neurons in the hypothalamus are essential in controlling energy homeostasis and body weight. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 75 Samples FTP download: GEO (BW, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA439388 Series Accession: GSE112125 ID: 200112125 2361. Genome-wide map of open-chromatin region in Leukemia cell-lines (Submitter supplied) We performed ATAC-seq on publicly available leukemia cell-lines and used them to predict non-coding regulatory mutations in open-chromatin regions of the genome. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE129nnn/GSE129086/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA530018 Series Accession: GSE129086 ID: 200129086 2362. Ikaros tumor suppression and epigenetic regulation [ATAC-seq] (Submitter supplied) Ikaros encodes a transcription factor that functions as a tumor suppressor in T-ALL. The mechanisms through which Ikaros regulates gene expression and cellular proliferation in T-ALL are unknown. Re-introduction of Ikaros into Ikaros-null T-ALL cells results in cessation of cellular proliferation and induction of T-cell differentiation. We performed dynamic global epigenomic and gene expression analyses to determine the role of Ikaros in tumor suppression during this process. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA522416 Series Accession: GSE126567 ID: 200126567 2363. Integrated epigenomic and transcriptomic profiling of terminal human erythropoiesis [ATAC-seq] (Submitter supplied) In vitro cultured CD34+ derived erythroblasts were sorted using surface markers and processed using ATAC-seq Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 28 Samples FTP download: GEO (BED, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA475744 Series Accession: GSE115672 ID: 200115672 2364. Exercise instructs hematopoietic progenitor cells and reduces chronic leukocytosis [ATAC-seq] (Submitter supplied) We show that regular physical activity decreases hematopoietic stem and progenitor cell (HSPC) proliferation in mice and results in reduced leukocyte production. Effects in HSPC last due to exercise-induced changes in the HSPC epigenome, as assessed by ATAC-seq, which remained for weeks after running ceased. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434141 Series Accession: GSE110639 ID: 200110639 2365. Human iPSC-derived retinal pigment epithelium: a model system for identifying and functionally characterizing causal variants at AMD risk loci (Submitter supplied) We evaluate whether human induced pluripotent stem cell-derived retinal pigment epithelium (iPSC-RPE) cells can be used to prioritize and functionally characterize causal variants at age-related macular degeneration (AMD) risk loci. We generated iPSC-RPE from six subjects and show that they have morphological and molecular characteristics similar to native RPE. We generated RNA-seq, ATAC-seq, and H3K27ac ChIP-seq data and observe high similarity in gene expression and enriched transcription factor motif profiles between iPSC-RPE and human fetal-RPE. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 24 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126847/ Series Accession: GSE126847 ID: 200126847 2366. A genome-wide assessment of the ancestral neural crest gene regulatory network (Submitter supplied) The neural crest is an embryonic cell population that contributes to key vertebrate-specific features including the craniofacial skeleton and peripheral nervous system. Here we examine the transcriptional profiles and chromatin accessibility of neural crest cells in the basal sea lamprey, in order to gain insight into the ancestral state of the neural crest gene regulatory network (GRN) at the dawn of vertebrates. more... Organism: Lampetra planeri; Petromyzon marinus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24750 GPL24751 GPL24752 28 Samples FTP download: GEO (BED, FA, GTF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112072/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA439307 Series Accession: GSE112072 ID: 200112072 2367. Gene expression signatures of Naïve vs Revertant CD8 T cells from human cord blood (Submitter supplied) We have employed whole genome microarray expression profiling as a discovery platform to identify genes with the potential to distinguish between naive CD8+ T cells (TN) and the same cells which, after activation and incubation with homeostatic cytokines, had reverted to a naive-like phenotype (TNrev). Three umbilical cord blood samples were used to enrich TN and to produce the respective TNrev. Successive ATAC-Seq analysis showed correlation between degree of chromatin accessibility and gene expression profile for both TN and TNrev cells. Organism: Homo sapiens Type: Expression profiling by array Platform: GPL16699 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114812/ Series Accession: GSE114812 ID: 200114812 2368. TCF21 and AP-1 interact through epigenetic modifications to regulate coronary artery disease gene expression [ATAC-Seq] (Submitter supplied) The majority of genetic variation associated with coronary artery disease (CAD) resides in non- coding regions that are expected to involve transcriptional and epigenetic mechanisms of gene expression. We have identified a transcriptional network downstream of the CAD associated transcription factor (TF) TCF21 and provide evidence for TCF21 colocalization and co- regulation with the activator protein-1 (AP-1) complex in disease loci. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 6 Samples FTP download: GEO (BED, BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506321 Series Accession: GSE122756 ID: 200122756 2369. The role of beta-catenin signaling in regulating barrier vs. non-barrier gene expression programs in circumventricular organ and ocular vasculatures (Submitter supplied) The mammalian brain, spinal cord, and retina are supplied by capillaries that do not permit free diffusion of molecules between serum and parenchyma, a property that defines the blood-brain and blood-retina barriers. Exceptions to this pattern are found in the circumventricular organs (CVOs), a set of small midline brain structures that are supplied by high permeability capillaries. In the eye and brain, high permeability capillaries are also present in the choriocapillaris, which supplies the retinal pigment epithelium and photoreceptors, and the ciliary body and choroid plexus, the sources of aqueous humor and cerebrospinal fluid, respectively. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19057 52 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA503625 Series Accession: GSE122117 ID: 200122117 2370. Loss-of-function of PTPN2 promotes pathogenic loss of FoxP3+ in RORgt+ Tregs [ATAC-seq] (Submitter supplied) Genetic variants at the PTPN2 locus, which encodes the tyrosine phosphatase PTPN2, cause reduced gene expression and are linked to rheumatoid arthritis (RA) and other autoimmune diseases. PTPN2 inhibits signaling through the T cell and cytokine receptors and loss of PTPN2 promotes T cell expansion and CD4 and CD8-driven autoimmunity. However, it remains unknown whether loss of PTPN2 in FoxP3+ regulatory T cells (Treg) plays a role in autoimmunity. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA508900 Series Accession: GSE123486 ID: 200123486 2371. Genome-scale screens identify JNK/JUN signaling as a barrier for pluripotency exit and endoderm differentiation (Submitter supplied) Human embryonic and induced pluripotent stem cells (hESCs/hiPSCs) hold great promise for cell-based therapies and drug discovery. However, homogeneous differentiation remains a major challenge, highlighting the need for understanding developmental mechanisms. We performed genome-scale CRISPR screens to uncover regulators of definitive endoderm (DE) differentiation, which unexpectedly uncovered five JNK/JUN family genes as key barriers of DE differentiation. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL16791 59 Samples FTP download: GEO (BW, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431297 Series Accession: GSE109524 ID: 200109524 2372. Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 30 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126543/ Series Accession: GSE126543 ID: 200126543 2373. Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons [ATAC-Seq] (Submitter supplied) Loss of the nuclear RNA binding protein TAR DNA binding protein-43 (TDP-43) into cytoplasmic aggregates is the strongest correlate to neurodegeneration in amyotrophic lateral sclerosis and frontotemporal degeneration. The molecular changes associated with the loss of nuclear TDP-43 in human tissues are not entirely known. Using a novel subcellular fractionation and fluorescent activated cell sorting method to enrich for diseased neuronal nuclei without TDP-43 from post-mortem FTD-ALS human brain, we characterized the effects of TDP-43 loss on the transcriptome and chromatin accessibility. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 14 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA522296 Series Accession: GSE126541 ID: 200126541 2374. Extensive recovery of embryonic enhancer and gene memory stored in hypomethylated enhancer DNA. (Submitter supplied) To understand how dynamics of enhancer features correlates with gene expression in adult tissue and during development, we analyzed histone modifications, chromatin accesibility, DNA methylation and gene expression at multiple time points during mouse development and adult mice. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL19057 52 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA435604 Series Accession: GSE111024 ID: 200111024 2375. Interrogation of human hematopoiesis at single-cell and single-variant resolution (Submitter supplied) Incomplete annotation of cell-to-cell state variation and widespread linkage disequilibrium in the human genome represent significant challenges to elucidating mechanisms of trait-associated genetic variation. Here, using data from the UK Biobank, we perform genetic fine-mapping for 16 blood cell traits to quantify posterior probabilities of association while allowing for multiple independent signals per region. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489276 Series Accession: GSE119453 ID: 200119453 2376. The ATPase module of mammalian SWI/SNF family complexes mediates subcomplex identity and catalytic activity-independent genomic targeting (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 63 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117735/ Series Accession: GSE117735 ID: 200117735 2377. The mSWI/SNF ATPase module mediates subcomplex identity and non-catalytic targeting in SCCOHT [ATAC-seq] (Submitter supplied) Perturbations to mammalian SWI/SNF (mSWI/SNF) chromatin remodeling complexes have been widely implicated as driving events across cancers1. One such perturbation is the dual loss of the SMARCA4 and SMARCA2 ATPase subunits, which has recently been implicated in rare cancers such as small cell carcinoma of the ovary, hypercalcemic type (SCCOHT)2-5, SMARCA4-deficient thoracic sarcomas6 and dedifferentiated endometrial carcinomas7. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481733 Series Accession: GSE117301 ID: 200117301 2378. H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles (Submitter supplied) While the histone variant H2A.Z is known to be required for mitosis, it is also enriched in nucleosomes surrounding the transcription start site of active promoters, implicating H2A.Z in transcription. However, evidence obtained so far mainly rely on correlational data generated in actively dividing cells. We have exploited a paradigm in which transcription is uncoupled from the cell cycle by developing an in vivo system to inactivate H2A.Z in terminally differentiated post-mitotic muscle cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL28430 GPL21103 22 Samples FTP download: GEO (BB, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111576/ Series Accession: GSE111576 ID: 200111576 2379. H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles [ChIP-Seq - muscle] (Submitter supplied) The histone variant H2A.Z is enriched in nucleosomes surrounding the transcription start site of active promoters, suggesting that it might be implicated in transcription. It is also required during mitosis. However, evidences obtained so far mainly rely on correlative evidences obtained in actively dividing cells. We have defined a paradigm in which cell cycle cannot interfere with H2A.Z transcriptional studies by developing an in vivo systems to invalidate H2A.Z in terminally differentiated post-mitotic muscle cells to dissociate its role during transcription from its role during mitosis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437456 Series Accession: GSE111575 ID: 200111575 2380. H2A.Z is dispensable for both basal and activated transcription in post-mitotic mouse muscles [RNA-Seq - muscle] (Submitter supplied) The histone variant H2A.Z is enriched in nucleosomes surrounding the transcription start site of active promoters, suggesting that it might be implicated in transcription. It is also required during mitosis. However, evidences obtained so far mainly rely on correlative evidences obtained in actively dividing cells. We have defined a paradigm in which cell cycle cannot interfere with H2A.Z transcriptional studies by developing an in vivo systems to invalidate H2A.Z in terminally differentiated post-mitotic muscle cells to dissociate its role during transcription from its role during mitosis. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL21103 12 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437455 Series Accession: GSE111573 ID: 200111573 2381. Mllt3 Governs Self-Renewal And Engraftment Of Human Hematopoietic Stem Cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL20301 GPL18573 69 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111484/ Series Accession: GSE111484 ID: 200111484 2382. Analysis of chromatin accessibility in uncultured fetal liver hematopoietic stem-progenitor cells and upon MLLT3 overexpression [ATACseq] (Submitter supplied) MLLT3 binds to open gene TSS Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 7 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437210 Series Accession: GSE111480 ID: 200111480 2383. Ets1 modulates epigentic landscape of key TFH genes in T naïve cells (Submitter supplied) Ets1 can directly bind key TFH genes, regulating their expression . Loss of Ets1 results in the pre-mature expression of TFH-genes in Non-TFH cells. We wished to analyze if loss of Ets1 correlated with changes in chromatin accessibility especially in TFH gene loci. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434078 Series Accession: GSE110594 ID: 200110594 2384. RNA-seq, ChIP-seq and ATAC-seq analysis of MKL1 blocked cells during reprogramming (Submitter supplied) Actins and regulators of actin dynamics generate contractile forces providing major mechanical and structural support for the cell. Whether and how they actively participate in cell fate control is not clear. Here, we report the actin responsive transcription factor complex MKL1/SRF, the major transcriptional regulator of large numbers of actin cytoskeletal genes, as an important regulator of genomic accessibility and cell fate outcome. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL17021 44 Samples FTP download: GEO (BIGWIG, BW, CSV, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA492996 Series Accession: GSE120399 ID: 200120399 2385. Transformation of megakaryocyte-erythroid progenitors to acute myeloid leukemia-initiating cells: ATAC-seq (Submitter supplied) Oncogenic mutations confer aberrant replicative capacity to cells with little or no replicative capacity, generating cancer stem cells that perpetuate the tumor through extensive self-replication and differentiation blockade. However, whether oncogenes disrupt the cellular identity of cancer stem cell by altering the developmental potential is unknown. Fate conversion has been demonstrated by ectopic expression of master transcriptional regulators, such as PU.1 and C/EBPα that confers myeloid cell fate to other cell types, and PRDM16 that confers brown adipose fate to white adipocytes or myoblasts. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 5 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA488712 Series Accession: GSE119301 ID: 200119301 2386. Defining transcription factor networks that govers SCC growth [ATAC-seq] (Submitter supplied) Chromatin accessibility was deffine in TPCs from SCC in order to defines Pitx1, Sox2, Trp63 and Klf4 occupancy. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA411785 Series Accession: GSE104136 ID: 200104136 2387. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [CRC_ATAC] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 3 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505668 Series Accession: GSE122583 ID: 200122583 2388. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [CRC_scRNA] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 272 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505670 Series Accession: GSE122582 ID: 200122582 2389. Integrating ATAC-seq and RNA-seq reveals tissue-specific genes and repressed networks in the placenta (Submitter supplied) We performed ATAC-seq on placenta dissected from e9.5 timed-pregnant mice in order to generate genome-wide chromatin accessibility maps. Integrating this data with previously published RNA-seq data showed that: 1) genes that have high expression and high ATAC-seq read coverage at the transcription start site (TSS) were enriched for house-keeping functions; 2) genes that have high expression and medium-low coverage at the TSS were enriched for placenta-specific genes and functions; 3) genes that have low expression and high TSS coverage are actively repressed. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493666 Series Accession: GSE120599 ID: 200120599 2390. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_barcoding_scRNA] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 384 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484873 Series Accession: GSE118203 ID: 200118203 2391. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_barcoding_ATAC] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484872 Series Accession: GSE118202 ID: 200118202 2392. Maintenance of CTCF and transcription factor-mediated interactions from gametes to the early mouse embryo (Hi-C) (Submitter supplied) Mechanisms by which the mammalian gametes encode epigenetic information that can be transmitted to the progeny are relatively unknown. We find that many sperm promoters in mouse sperm are occupied by phosphorylated forms of RNA polymerase II and the Mediator complex. Analysis of ATAC-seq data suggest that the same promoters are occupied by components of the transcription complex in GV and MII oocytes and preimplantation embryos. more... Organism: Mus musculus Type: Other Platform: GPL17021 2 Samples FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA480450 Series Accession: GSE116856 ID: 200116856 2393. Maintenance of CTCF and transcription factor-mediated interactions from gametes to the early mouse embryo (ChIP-seq) (Submitter supplied) Mechanisms by which the mammalian gametes encode epigenetic information that can be transmitted to the progeny are relatively unknown. We find that many sperm promoters in mouse sperm are occupied by phosphorylated forms of RNA polymerase II and the Mediator complex. Analysis of ATAC-seq data suggest that the same promoters are occupied by components of the transcription complex in GV and MII oocytes and preimplantation embryos. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 19 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA480447 Series Accession: GSE116855 ID: 200116855 2394. Maintenance of CTCF and transcription factor-mediated interactions from gametes to the early mouse embryo (ATAC-seq) (Submitter supplied) Mechanisms by which the mammalian gametes encode epigenetic information that can be transmitted to the progeny are relatively unknown. We find that many sperm promoters in mouse sperm are occupied by phosphorylated forms of RNA polymerase II and the Mediator complex. Analysis of ATAC-seq data suggest that the same promoters are occupied by components of the transcription complex in GV and MII oocytes and preimplantation embryos. more... Organism: Mus musculus; Macaca mulatta; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL11154 GPL14954 10 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA480448 Series Accession: GSE116854 ID: 200116854 2395. Dynamic BAF chromatin remodeling complex subunit inclusion promotes temporally distinct gene expression programs in cardiogenesis [ATAC-Seq] (Submitter supplied) We performed ATAC-seq on WT, BAF60c KO, and BAF170 KO CPs and CMs in 2-5 biological replicates follwing Corces et al., 2017 paper. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA478099 Series Accession: GSE116295 ID: 200116295 2396. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [CC100_scRNA] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 480 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474195 Series Accession: GSE115217 ID: 200115217 2397. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [CC100_scATAC] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 192 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474196 Series Accession: GSE115216 ID: 200115216 2398. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [CC100_ATAC] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474197 Series Accession: GSE115215 ID: 200115215 2399. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [Colonies_scRNA] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 1016 Samples FTP download: GEO (TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474198 Series Accession: GSE115214 ID: 200115214 2400. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [Colonies_ATAC] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL15520 40 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474189 Series Accession: GSE115213 ID: 200115213 2401. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_clones_scMito] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Other Platform: GPL18573 94 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474190 Series Accession: GSE115212 ID: 200115212 2402. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_clones_scATAC] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 96 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474191 Series Accession: GSE115211 ID: 200115211 2403. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_clones_scRNA] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 81 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474187 Series Accession: GSE115210 ID: 200115210 2404. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_clones_RNA] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 3 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474188 Series Accession: GSE115209 ID: 200115209 2405. Human lineage tracing enabled by mitochondrial mutations and single cell genomics [TF1_clones_ATAC] (Submitter supplied) Lineage tracing provides unprecedented insights into the fate of individual cells and their progeny in complex organisms. While effective genetic approaches have been developed in vitro and in animal models, these cannot be used to interrogate human physiology in vivo. Instead, naturally occurring somatic mutations have been utilized to infer clonality and lineal relationships between cells in human tissues, but current approaches are limited by high error rates and scale, and provide little information about the state or function of the cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 69 Samples FTP download: GEO (BED, CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474186 Series Accession: GSE115208 ID: 200115208 2406. Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 66 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114176/ Series Accession: GSE114176 ID: 200114176 2407. Molecular basis of neuronal subtype bias introduced by proneural factors Ascl1 and Neurog2 (ATAC-seq) (Submitter supplied) Basic helix-loop-helix (bHLH) proneural transcription factors (TFs) Ascl1 and Neurog2 are integral to the development of the nervous system. Here, we investigated the molecular mechanisms by which Ascl1 and Neurog2 control the acquisition of generic neuronal fate and impose neuronal subtype identity. Using direct neuronal programming of embryonic stem cells, we found that Ascl1 and Neurog2 regulate distinct targets by binding to largely different sets of sites. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA467528 Series Accession: GSE114171 ID: 200114171 2408. Chromatin accessibility landscape upon induction of Msgn1, Pax3 and Myf5 in mesodermal cells and identification of conserved Pax3 binding sites and target genes during skeletal myogenesis (Submitter supplied) The transcriptional mechanisms driving lineage specification during development are still largely unknown as the interplay of multiple transcription factors makes it difficult to dissect these molecular events. Using a cell-based differentiation platform to probe transcription function, we investigated the role of the key paraxial mesoderm and skeletal myogenic commitment factors, Msgn1, Tbx6, Foxc1, Pax3, Paraxis, Meox1, Six1 and Myf5, in paraxial mesoderm and skeletal myogenesis. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 65 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA515516 Series Accession: GSE125203 ID: 200125203 2409. Gene expression profile in FTSEC cells (FT190 and FT194 cell lines) transduced with shRNA to knockdown RNF20 or with control shRNA using RNA-seq. (Submitter supplied) We identified that downregulation of RNF20/H2Bub1 is involved in HGSOC progression through altering key immune signaling pathways. The goal of this RNA-seq is to analyze gene expression profile in FTSEC cells (FT190 and FT194 cell lines) with RNF20 knockdown (shRNF20) or control shRNA. Integrating the data from ATAC-seq for same samples, we observed that expression of immune signaling pathways have significantly changed by RNF20/H2Bub1 downregulation. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome variation profiling by high throughput sequencing Platform: GPL16791 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA504052 Series Accession: GSE122237 ID: 200122237 2410. Chromatin conformation profile in FTSEC cells (FT190 and FT194 cell lines) transduced with shRNA to knockdown RNF20 or with control shRNA using ATAC-Seq (Submitter supplied) We identified that downregulation of RNF20/H2Bub1 is involved in HGSOC progression through altering key immune signaling pathways. The goal of this ATAC-seq is to profile chromatin conformation in FTSEC cells (FT190 and FT194 cell lines) with RNF20 knockdown (shRNF20) or control shRNA. Integrating the data from RNA-seq for same samples, we observed that expression of immune signaling pathways have significantly changed by RNF20/H2Bub1 downregulation. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL16791 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA504051 Series Accession: GSE122236 ID: 200122236 2411. Chromatin mapping and single-cell immune profiling defines the temporal dynamics of ibrutinib drug response in chronic lymphocytic leukemia (Submitter supplied) Chronic lymphocytic leukemia (CLL) is a genetically, epigenetically, and clinically heterogeneous disease. Despite this heterogeneity, the Bruton tyrosine kinase (BTK) inhibitor ibrutinib provides effective treatment for the vast majority of CLL patients. To define the underlining regulatory program, we analyzed high-resolution time courses of ibrutinib treatment in closely monitored patients, combining cellular phenotyping (flow cytometry), single-cell transcriptome profiling (scRNA-seq), and chromatin mapping (ATAC-seq). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL20301 188 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111015/ Series Accession: GSE111015 ID: 200111015 2412. Chromatin mapping and single-cell immune profiling defines the temporal dynamics of ibrutinib drug response in chronic lymphocytic leukemia [scRNA-seq] (Submitter supplied) Chronic lymphocytic leukemia (CLL) is a genetically, epigenetically, and clinically heterogeneous disease. Despite this heterogeneity, the Bruton tyrosine kinase (BTK) inhibitor ibrutinib provides effective treatment for the vast majority of CLL patients. To define the underlining regulatory program, we analyzed high-resolution time courses of ibrutinib treatment in closely monitored patients, combining cellular phenotyping (flow cytometry), single-cell transcriptome profiling (scRNA-seq), and chromatin mapping (ATAC-seq). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA435591 Series Accession: GSE111014 ID: 200111014 2413. Chromatin mapping and single-cell immune profiling defines the temporal dynamics of ibrutinib drug response in chronic lymphocytic leukemia [ATAC-seq] (Submitter supplied) Chronic lymphocytic leukemia (CLL) is a genetically, epigenetically, and clinically heterogeneous disease. Despite this heterogeneity, the Bruton tyrosine kinase (BTK) inhibitor ibrutinib provides effective treatment for the vast majority of CLL patients. To define the underlining regulatory program, we analyzed high-resolution time courses of ibrutinib treatment in closely monitored patients, combining cellular phenotyping (flow cytometry), single-cell transcriptome profiling (scRNA-seq), and chromatin mapping (ATAC-seq). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 176 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA435593 Series Accession: GSE111013 ID: 200111013 2414. Trained immunity-promoting nanobiologics suppress tumor growth and potentiate checkpoint blockade immunotherapy (Submitter supplied) We developed a nanobiologic platform that is designed to induce trained immunity. Through extensive in vitro screening, involving stability measurements and training assays on human and murine monocytes, as well as in vivo mouse biodistribution experiments, a bone marrow-avid nanobiologic lead candidate, named MTP10-HDL, was identified. MTP10-HDL’s potent anti-tumor capabilities were established in a dose response study. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21103 30 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA523329 Series Accession: GSE126793 ID: 200126793 2415. Epigenetic changes in amygdala and cortex of fear-conditioned and ErbB4 Knock-out mice (Submitter supplied) Chromatin accessibility provides an important window into the regulation of gene expression. Recently, the Assay of Transposase Accessible Chromatin with sequencing (ATAC-seq) was developed to profile genome-wide chromatin accessibility. Here we applied a read-downsampling approach to call robust ATAC-seq peaks in order to profile the regions of differential chromatin accessibility of central amygdala and cortex between different experimental conditions; fear-conditioned vs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA435600 Series Accession: GSE111021 ID: 200111021 2416. The lineage-specific transcriptional regulator, CDX2, navigates a dynamic chromatin landscape to control distinct stages of intestinal development (Submitter supplied) Important lineage regulators, such as the intestinal lineage regulator CDX2, can function over the timespan of intestinal development. The consequences of CDX2 knockout in the embryo versus in the adult are quite distinct. The data below provide a rationale for these divergent transcription factor functions in distinct developmental contexts, with unique binding patterns of CDX2 observed via ChIP-seq and unique gene regulatory targets defined via RNA-seq. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL21697 21 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474516 Series Accession: GSE115314 ID: 200115314 2417. cisTopic: cis-regulatory topic modelling on single-cell ATAC-seq data (Submitter supplied) We present cisTopic, a probabilistic framework to simultaneously discover co-accessible enhancers and stable cell states from sparse single-cell epigenomics data (http://github.com/aertslab/cistopic). On a compendium of single-cell ATAC-seq datasets from differentiating hematopoietic cells, brain, and transcription-factor perturbation dynamics, we demonstrate that topic modelling can be exploited for a robust identification of cell types, enhancers, and relevant transcription factors. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 771 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471732 Series Accession: GSE114557 ID: 200114557 2418. Chromatin accessibility of converted and control dermal BJ fibroblasts (Submitter supplied) We report changes in chromatin accessibility following ectopic expression of wildtype or mutant p63+/- KLF4 for 72 hours in dermal BJ fibroblasts. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521756 Series Accession: GSE126376 ID: 200126376 2419. Identification and characterization of HIV-specific resident memory CD8+ T cells in human lymphoid tissue (Submitter supplied) We investigate the role of resident memory T cells in protective immunity in HIV infection Funding sources: Michael R. Betts: NIH/NIAID R01 AI076066 and R01 AI118694 Marcus Buggert: Swedish Research Council (Dnr 537-2014-6829), Karolinska Institutet, Magnus Bergvall and Lars Hiertas Stiftelse Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21697 GPL20301 217 Samples FTP download: GEO (BW, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434272 Series Accession: GSE110684 ID: 200110684 2420. YAP Partially Reprograms Chromatin Accessibility to Directly Induce Adult Cardiogenesis in Vivo (Submitter supplied) Specialized adult somatic cells, such as cardiomyocytes (CMs), are highly differentiated with poor renewal capacity, an integral reason underlying organ failure in disease and aging. Among the least renewable cells in the human body, CMs renew approximately 1% annually. Consistent with poor CM turnover, heart failure is the leading cause of death. Here, we show that an active version of the Hippo pathway effector YAP, termed YAP5SA, partially reprograms adult mouse CMs to a more fetal and proliferative state. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19057 12 Samples FTP download: GEO (BIGWIG, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA508778 Series Accession: GSE123457 ID: 200123457 2421. Reversible Histone Glycation Drives Disease-Associated Changes in Chromatin Architecture (Submitter supplied) Glycation is a covalent protein modification that accumulates in the cellular environment. Histone proteins are particularly susceptible to glycation due to their extremely long half-lives and nucleophilic disordered tails. Here, we performed ATAC-seq on 293T cells cultured in the presence or absence of 0.5mM methylglioxal, a reactive glycolytic intermediate, for 12 hours. We demonstrate that methylglioxal treatment is associated with changes in histone occupancy and chromatin architecture globally. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 2 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA496485 Series Accession: GSE121252 ID: 200121252 2422. Bromodomain inhibition of the co-activators CBP/EP300 facilitates reprogramming (ATAC-seq) (Submitter supplied) Silencing of the somatic cell-type specific gene expression programs is a critical yet poorly understood step in nuclear reprogramming. To uncover chromatin-related pathways important for maintaining cell identity, we carried out a reprogramming screen using inhibitors of chromatin factors. Here we identify two independent acetyl-lysine competitive inhibitors targeting the bromodomains of coactivators EP300 and CBP as potent enhancers of reprogramming. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484886 Series Accession: GSE118218 ID: 200118218 2423. Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps [ATAC-seq] (Submitter supplied) We have developed a computational approach that uses self-organizing maps for integrative genomic analysis. We utilize this approach to identify the single-cell chromatin and transcriptomic profiles during mouse pre-B cell differentiation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 265 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89362/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352061 Series Accession: GSE89362 ID: 200089362 2424. Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 833 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89285/ Series Accession: GSE89285 ID: 200089285 2425. Integrative analysis of single-cell ATAC-seq and RNA-seq using Self-Organizing Maps [scRNA-Seq] (Submitter supplied) We have developed a computational approach that uses self-organizing maps for integrative genomic analysis. We utilize this approach to identify the single-cell chromatin and transcriptomic profiles during mouse pre-B cell differentiation. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 568 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA351246 Series Accession: GSE89280 ID: 200089280 2426. Nr4a transcription factors limit CAR-T cell function in solid tumors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 138 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123739/ Series Accession: GSE123739 ID: 200123739 2427. Nr4a transcription factors limit CAR-T cell function in solid tumors [RNA-Seq] (Submitter supplied) Chromatin accessibility with ATAC-seq and gene expression with RNA-seq for CD8 T cells expressing chimeric antigen receptors in solid tumors or after in vitro culture. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 47 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509668 Series Accession: GSE123738 ID: 200123738 2428. Nr4a transcription factors limit CAR-T cell function in solid tumors [ATAC-Seq] (Submitter supplied) Chromatin accessibility with ATAC-seq and gene expression with RNA-seq for CD8 T cells expressing chimeric antigen receptors in solid tumors or after in vitro culture. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 91 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509426 Series Accession: GSE123629 ID: 200123629 2429. Phase Separation of Ligand-Activated Enhancers Licenses Cooperative Chromosomal Enhancer Assembly (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other; Methylation profiling by high throughput sequencing Platforms: GPL16791 GPL17021 32 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99544/ Series Accession: GSE99544 ID: 200099544 2430. Phase Separation of Ligand-Activated Enhancers Licenses Cooperative Chromosomal Enhancer Assembly [ATAC-seq] (Submitter supplied) Detailed analysis of estrogen mediated enhancer landscape and chromosomal architectural changes specifically in human chromosome 21. Organism: Homo sapiens Type: Other Platform: GPL16791 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388871 Series Accession: GSE99542 ID: 200099542 2431. Single-cell combinatorial indexing ATAC-seq of HCC1143 with MEK, PI3K, and BET inhibition (Submitter supplied) We performed single-cell combinatorial indexing ATAC-seq on the basal-like TNBC cell line HCC1143 under MEK, PI3K, BET and combination treatments as well as DMSO controls Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521411 Series Accession: GSE126261 ID: 200126261 2432. methyl-ATAC-seq measures DNA methylation at accessible chromatin (Submitter supplied) Here we describe methyl-ATAC-seq (mATAC-seq), which implements modifications to ATAC-seq, subjecting the output to BS-seq. Merging these assays into a single protocol identifies the locations of open chromatin, and reveals the DNA methylation state of the underlying DNA.  Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BEDGRAPH, BW, COV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521336 Series Accession: GSE126215 ID: 200126215 2433. Bcor loss perturbs myeloid differentiation and promotes leukaemogenesis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL16417 GPL19057 47 Samples FTP download: GEO (BW, NARROWPEAK, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126264/ Series Accession: GSE126264 ID: 200126264 2434. Bcor loss perturbs myeloid differentiation and promotes leukaemogenesis [ATAC-seq] (Submitter supplied) Investigation of the chromatin accessibility in myeloid progenitor cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 1 Sample FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA521239 Series Accession: GSE126175 ID: 200126175 2435. Simultaneous profiling of transcriptome and chromatin accessibility in single nucleus (Submitter supplied) Here we describe SNARE-seq, a droplet-based method to simultaneously profile gene expression and chromatin accessibility in each of thousands of single nuclei. Employing this method, we profiled 1047 nuclei from human cell line mixture, 5081 and 10309 nuclei from neonatal and adult mouse brain. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL17021 GPL16791 36 Samples FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE126nnn/GSE126074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA520914 Series Accession: GSE126074 ID: 200126074 2436. Genome-wide regulatory adaptation shapes population-level genomic landscapes in Heliconius [ATAC-seq] (Submitter supplied) We test the hypothesis that intraspecific genomic divergence is linked to regulatory variation between Heliconius butterfly populations. We show that population-level divergence in chromatin accessibility and regulatory activity during wing development is abundant, and that differences in regulatory activity between populations are strongly associated with developmental stage. Genomic regions with high Fst are highly enriched for regulatory variants, and enrichment patterns vary significantly across development. more... Organism: Heliconius himera; Heliconius erato petiverana; Heliconius erato lativitta Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24134 GPL24135 GPL24133 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432242 Series Accession: GSE109889 ID: 200109889 2437. Rbpj expression in regulatory T cells is critical for restraining TH2 responses [spleen Rbpj WT and Rbpj KO ATAC-seq] (Submitter supplied) The transcriptional regulator Rbpj is involved in T-helper (TH) subset polarization, but its function in Treg cells remains unclear. Here we show that Treg-specific Rbpj deletion leads to splenomegaly and lymphadenopathy despite increased numbers of Treg cells with a polyclonal TCR repertoire. A specific defect of Rbpj-deficient Treg cells in controlling TH2 polarization and B cell responses was observed, leading to the spontaneous formation of germinal centers and a TH2-associated immunoglobulin class switch as well as T-cell polarization into TH2 effector cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA488291 Series Accession: GSE119164 ID: 200119164 2438. Epigenome regulation during epidermal lineage commitment [ChIP-seq] (Submitter supplied) Recent advances in human pluripotent stem cell (hPSC) technology provide a unique resource for skin tissue replacement, but the detailed understanding of regulatory mechanisms limits standardization and broad clinical application. Here, we interrogate chromatin accessibility and transcriptome dynamics during hPSC-derived epidermal differentiation, and discover two critical transition periods: surface ectoderm initiation and keratinocyte maturation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 14 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA517715 Series Accession: GSE125857 ID: 200125857 2439. Epigenome regulation during epidermal lineage commitment (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL11154 61 Samples FTP download: GEO (BEDGRAPH, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122385/ Series Accession: GSE122385 ID: 200122385 2440. Epigenome regulation during epidermal lineage commitment [RNA-seq] (Submitter supplied) Recent advances in human pluripotent stem cell (hPSC) technology provide a unique resource for skin tissue replacement, but the detailed understanding of regulatory mechanisms limits standardization and broad clinical application. Here, we interrogate chromatin accessibility and transcriptome dynamics during hPSC-derived epidermal differentiation, and discover two critical transition periods: surface ectoderm initiation and keratinocyte maturation. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA504858 Series Accession: GSE122383 ID: 200122383 2441. Epigenome regulation during epidermal lineage commitment [ATAC-seq, RNA-seq] (Submitter supplied) Recent advances in human pluripotent stem cell (hPSC) technology provide a unique resource for skin tissue replacement, but the detailed understanding of regulatory mechanisms limits standardization and broad clinical application. Here, we interrogate chromatin accessibility and transcriptome dynamics during hPSC-derived epidermal differentiation, and discover two critical transition periods: surface ectoderm initiation and keratinocyte maturation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL11154 35 Samples FTP download: GEO (BED, BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA422918 Series Accession: GSE108248 ID: 200108248 2442. Combined chemosensitivity and chromatin profiling prioritizes drug combinations in CLL (Submitter supplied) The Bruton tyrosine kinase (BTK) inhibitor ibrutinib has substantially improved therapeutic options for chronic lymphocytic leukemia (CLL). Although ibrutinib is not curative, it has a profound effect on CLL cells and may create new pharmacologically exploitable vulnerabilities. To identify such vulnerabilities, we developed a systematic approach that combines epigenome profiling (charting the gene-regulatory basis of cell state) with single-cell chemosensitivity profiling (quantifying cell-type-specific drug response) and bioinformatic data integration. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 38 Samples FTP download: GEO (BIGWIG, CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392468 Series Accession: GSE100672 ID: 200100672 2443. Mitotic chromosome binding predicts transcription factor properties in interphase [ATAC-Seq] (Submitter supplied) Mammalian transcription factors (TFs) differ broadly in their nuclear mobility and sequence-specific/ non-specific DNA binding affinity. How these properties affect the ability of TFs to occupy their specific binding sites in the genome and modify the epigenetic landscape is unclear. Here we combined live cell quantitative measurements of mitotic chromosome binding (MCB) of 502 TFs, measurements of TF mobility by fluorescence recovery after photobleaching, single molecule imaging of DNA binding in live cells, and genome-wide mapping of TF binding and chromatin accessibility. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 31 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490288 Series Accession: GSE119781 ID: 200119781 2444. Subtle changes in chromatin loop contact propensity are associated with differential gene regulation and expression (Submitter supplied) We quantitatively interrogate these relationships by comparing Hi-C and molecular phenotype data across cell types and haplotypes. While chromatin loops consistently form across different cell types, subtle quantitative differences in contact frequency are associated with larger changes in gene expression and H3K27ac. Across haplotypes, we find larger differences in contact frequency at imprinted and copy number variable loci. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platforms: GPL20301 GPL16791 141 Samples FTP download: GEO (BW, HIC, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE125nnn/GSE125540/ Series Accession: GSE125540 ID: 200125540 2445. Assessing chromatin accessibility in maize with ATAC-seq (Submitter supplied) Maize (Zea mays) is one of the most important crop in the world. Better understanding the maize chromatin architecture points to novel approaches to improve crop yield. Here, we describe the first ATAC-seq protocol to assess the maize genome. Fresh leaf tissue was gently chopped by a blade to release intact nuclei which later were fractionated using Percoll-sucrose gradient. The isolated nuclei were treated with a transposase that fragments and tags the genome; these fragments were subjected to two rounds of PCR to generate the ATAC-seq library. more... Organism: Zea mays Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24163 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493188 Series Accession: GSE120491 ID: 200120491 2446. TET2 binding to enhancers facilitates transcription factor recruitment in hematopoietic cells [ATAC-Seq] (Submitter supplied) The epigenetic regulator TET2 is frequently mutated in hematological diseases. Mutations have been shown to arise in hematopoietic stem cells early in disease development, lead to altered DNA methylation landscapes and to an increased risk of hematopoietic malignancy. Here, we show by genome-wide mapping of TET2 binding sites in different cell types that TET2 localizes to regions of open chromatin and cell-type specific enhancers. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 28 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA476605 Series Accession: GSE115962 ID: 200115962 2447. ATAC-seq on primate adipose tissue (Submitter supplied) To better understand the evolution of primate adipose, we performed compartive analyses of adipose tissue from human, chimpanzee and macque adipose. Organism: Pan troglodytes; Macaca mulatta; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL23949 GPL20301 GPL23423 13 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA507364 Series Accession: GSE123038 ID: 200123038 2448. Small-molecule targeting of brachyury transcription factor addiction in chordoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL18573 31 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109794/ Series Accession: GSE109794 ID: 200109794 2449. Small-molecule targeting of brachyury transcription factor addiction in chordoma [ATAC-Seq] (Submitter supplied) Chordoma is a primary bone cancer with no approved therapy. The identification of therapeutic targets in this disease has been challenging due to the infrequent occurrence of clinically actionable somatic mutations in chordoma tumors. Here we describe the discovery of therapeutically targetable chordoma dependencies via genome-scale CRISPR-Cas9 screening and focused small-molecule sensitivity profiling. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 3 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432041 Series Accession: GSE109785 ID: 200109785 2450. ATAC-seq analysis of Kindlin-2 and Rela K.O. mouse fibroblasts (Submitter supplied) The goal of this study was to observe changes in chromatin accessibility between Kindlin-2 and Rela K.O. mouse fibroblasts with their wild-type counterparts. We performed ATAC-seq which allowed us to identify regions with enhanced chromatin accessibility in the K.O. cells compared to their wild-type counterparts. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA418961 Series Accession: GSE107075 ID: 200107075 2451. Mitochondrial Membrane Potential Regulates Nuclear Gene Expression in Macrophages Exposed to PGE2 (ATAC-seq) (Submitter supplied) Metabolic engagement is intrinsic to immune cell function. Prostaglandin E2 (PGE2) has been shown to modulate macrophage activation, yet how PGE2 might affect metabolism is unclear. Here we show that PGE2 causes mitochondrial membrane potential (Δψm) to dissipate in interleukin-4 activated macrophages (M(IL-4)). Effects on Δψm are a consequence of PGE2-initiated transcriptional regulation of genes in the malate-aspartate shuttle (MAS), particularly GOT1. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 4 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489286 Series Accession: GSE119463 ID: 200119463 2452. Identification of Transcription Factor Binding Sites using ATAC-seq (Submitter supplied) Dendritic cells (DC) are professional antigen presenting cells that comprise different subsets: classical DC type 1 and 2 (cDC1 and cDC2, respectively) and plasmacytoid DC (pDC). In this study cDC1 or pDC were obtained in a two-step in vitro culture system according to Felker et al., J. Immunol. 185, 5326-5335, 2010. Briefly, mouse bone marrow cells were first amplified with a specific cytokine cocktail and then induced to differentiate into DC with Flt3 ligand. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11002 4 Samples FTP download: GEO (BED, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484892 Series Accession: GSE118221 ID: 200118221 2453. The molecular logic of Nanog-induced self-renewal in mouse embryonic stem cells (Submitter supplied) Identification of Nanog targets by transcriptomic changes of Nanog induction and depletion, identification of Nanog co-binding logic by ChIP-seq of Nanog co-binding factors with and without Nanog depletion. H3K27me3 with Nanog induction in +/- Lif. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 74 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA487194 Series Accession: GSE118898 ID: 200118898 2454. Compare chromatin open regions (OCRs) between PTEN-KD and PTEN/BRG1-KD 22RV-1 cells by ATAC-Seq (Submitter supplied) Transposase-accessible chromatin using sequencing (ATAC-seq) assay was performed to compare chromatin open regions (OCRs) between PTEN-KD and PTEN/BRG1-KD 22RV-1 cells. Ablation of BRG1 in PTEN-depleted cells preferentially led to the reductions of OCR at enhancers, but not promoter regions. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA475576 Series Accession: GSE115617 ID: 200115617 2455. Xist RNA antagonizes the chromatin remodeler, BRG1, from the inactive X chromosome (Submitter supplied) The noncoding Xist RNA recruits silencing factors to the inactive X (Xi) and facilitates re-organization of Xi structure. Here, we examine the epigenomic landscape of the Xi and assess how Xist alters chromatin accessibility. Interestingly, Xist deletion propels selective chromatin re-accessibility on the Xi, affecting various Xi regions differentially. Re-accessibility is regulated by BRG1, an ATPase subunit of SWI/SNF chromatin remodeling complex. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 31 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA430728 Series Accession: GSE109395 ID: 200109395 2456. Genome-wide chromatin accessibility profile of zebrafish cardiomyocytes throughout heart development (Submitter supplied) By using transgenic zebrafish lines Tg(nxk2.5:GFP) (Witzel et al. 2012) and Tg(myl7:EGFP) (D'Amico et al. 2007), we have characterized chromatin accessibility of FACS-isolated CM (GFP+) from developing zebrafish heart at 24, 48 and 72 hpf, corresponding to heart tube formation, chamber formation and differentiation and heart maturation, respectively. GFP- cells were used as a control. We have identified cardiac regulatory networks playing a crucial role in heart morphogenesis. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA492281 Series Accession: GSE120237 ID: 200120237 2457. LncRNAs and open chromatin regions constitute midbrain dopaminergic neuron- specific molecular signatures (Submitter supplied) Midbrain dopaminergic (DA) neurons are involved in diverse neurological functions, including control of movements, emotions or reward. In return, their dysfunctions cause severe clinical manifestations in humans, such as the appearance of motor and cognitive symptoms in Parkinson’s Disease. The physiology and pathophysiology of these neurons are widely studied, mostly with respect to molecular mechanisms implicating protein-coding genes. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing Platform: GPL19057 11 Samples FTP download: GEO (BROADPEAK, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA430414 Series Accession: GSE108917 ID: 200108917 2458. EndoC-βH1 multiomic profiling defines gene regulatory programs intrinsic to human β cell identity and function (Submitter supplied) EndoC-βH1 is emerging as a critical human β cell model to study the genetic and environmental etiologies of β cell (dys)function and diabetes. Comprehensive knowledge of its molecular landscape is lacking, yet required, for effective use of this model. Here, we report chromosomal (spectral karyotyping), genetic (genotyping), epigenomic (ChIP-seq and ATAC-seq), chromatin interaction (Hi-C and Pol2 ChIA-PET), and transcriptomic (RNA-seq and miRNA-seq) maps of EndoC-βH1. more... Organism: Homo sapiens Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL18573 19 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA480287 Series Accession: GSE118588 ID: 200118588 2459. SMARCA4 loss is synthetic lethal with CDK4/6 via restriction CCND1 chromatin accessibility in lung cancer (Submitter supplied) Tumor suppressor SMARCA4 (BRG1), a key SWI/SNF chromatin remodelling gene, is frequently inactivated in cancers which is not directly druggable. We recently uncovered that SMARCA4 loss in an ovarian cancer subtype causes cyclin D1 deficiency leading to susceptibility to CDK4/6 inhibition. Here, we show that this vulnerability is conserved in non-small cell lung cancer (NSCLC), where SMARCA4 loss also results in reduced cyclin D1 expression and selective sensitivity to CDK4/6 inhibitors. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA498319 Series Accession: GSE121755 ID: 200121755 2460. Gonadal supporting cells acquire sex-specific regulatory elements during mammalian sex determination (Submitter supplied) Purpose: In this study we employed unbiased, genome-wide techniques to identify regulatory elements during murine sex determination. Methods: We performed ATAC-seq on 60K FACS-purified XX and XY gonadal cells before and after sex determination to map nucleosome depleted regions (NDRs) indicative of regulatory elements. To determine whether these are active enhancers, we performed ChIP-seq for H3K27ac, a histone modification that marks active enhancers in both sexes and time points. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA486735 Series Accession: GSE118755 ID: 200118755 2461. Dynamic rewiring of transcription factor networks during smooth muscle cell phenotypic modulation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18694 66 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111715/ Series Accession: GSE111715 ID: 200111715 2462. Dynamic rewiring of transcription factor networks during smooth muscle cell phenotypic modulation (ATAC-Seq data sets) (Submitter supplied) Phenotypic modulation of smooth muscle cells (SMC) is a hallmark of vascular disease and a classic cell state transformation mediated by convergent signal-integration in the nucleus. Here, using PDGF-mediated SMC activation, we describe for the first time the dynamic active chromatin response and global transcriptional remodeling of cell state. We find that PDGF stimulation drives global transcriptional amplification and anabolism concurrent with increased proliferation and motility. more... Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18694 10 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437958 Series Accession: GSE111713 ID: 200111713 2463. Open chromatin profiling in adipose tissue marks genomic regions with functional roles in cardiometabolic traits (Submitter supplied) Identifying the regulatory mechanisms of genome-wide association study (GWAS) loci affecting adipose tissue has been restricted due to limited characterization of adipose transcriptional regulatory elements. We profiled chromatin accessibility in three frozen human subcutaneous adipose tissue needle biopsies and preadipocytes and adipocytes from the Simpson Golabi-Behmel Syndrome (SGBS) cell strain using an assay for transposase-accessible chromatin (ATAC-seq). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL20301 8 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434436 Series Accession: GSE110734 ID: 200110734 2464. Comparison of the transcriptome and chromatin state between human cord blood HSC and human iPSC derived hematopoietic progenitor using next-generation sequencing (Submitter supplied) We analyzed the transcriptome and transposase accessible chromatin–using RNAseq and ATAC-seq, respectively–of human cord blood hematopoietic stem cells and human iPSC derived hematopoietic progenitors. iPSC-derived HPCs were FACS sorted CD34+/CD43+ cells. We also examined the effect of inhibiting Wnt signaling during the second week of hematopoietic differentiation of hiPSC. The integrated transcriptomic, epigenomic and functional analyses not only uncovered novel molecular differences between hPSC- HPCs and native HSCs, but also enabled us to target these differences with small molecules to improve derivation and function of hPSC derived HPCs. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 9 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE69nnn/GSE69932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA287155 Series Accession: GSE69932 ID: 200069932 2465. An atlas of genetic influences on osteoporosis in humans and mice (Submitter supplied) In our study, we leveraged RNA-seq data from four different human osteoblast cell lines and ATAC-seq data from one human osteoblast cell line to identify target genes for plausibly causal SNPs influencing bone density. We also re-called ENCODE generated osteoblast DNase hypersensitive sites, and have uploaded them here for sharing. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 5 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA494401 Series Accession: GSE120755 ID: 200120755 2466. Genome-wide maps of chromatin state in naïve CD4+ T cells, WT/EZH2-null TFH and TH1 cells (Submitter supplied) ATAC-Seq experiments were performed to elucidate the chromatin state changes among naïve CD4+ T cells, WT follicular helper T (TFH) cells and WT type 1 helper T (TH1) cells Day2 (D2), Day5 (D5), Day8 (D8) post-LCMV-Armstrong infection, as well as EZH2-null (KO) TFH and TH1 at Day8 post-LCMV-infection. The analysis suggested stringent lineage-specific mode of chromatin accessibility in each group, indicating chromatin remodeling is tightly associated with TFH versus TH1 lineage differentiation in response to acute viral infection. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL21103 40 Samples FTP download: GEO (BIGWIG, BROADPEAK, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493269 Series Accession: GSE120532 ID: 200120532 2467. Genome-wide chromatin profiling usign ATAC-seq of diabetic or non-diabetic murine bone marrow derived macrophages (BMDM) (Submitter supplied) Previous ATAC-seq analysis revealed changes in bone marrow HSC chromatin structure and transcription factor binding site accessibility. Here, we use ATAC-seq analyses on bone marrow derived macrophages to characterise whether HSC chromatin changes are long-lasting, and differences persist in diabetic macrophages, after glucose normalisation, and helps to drive pro-inflammatory gene expression and function. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 24 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511490 Series Accession: GSE124298 ID: 200124298 2468. An extended regulatory landscape drives Tbx18 activity in a variety of prostate-associated cell lineages (Submitter supplied) The evolutionarily conserved transcription factor, Tbx18, is expressed in a dynamic pattern throughout embryonic and early postnatal life and plays crucial roles in the development of multiple organ systems. Previous studies have indicated that this dynamic function is controlled by an expansive regulatory architecture, extending far upstream and downstream of the gene. With the goal of identifying elements that interact with the Tbx18 promoter in developing prostate, we coupled chromatin conformation capture (4C) and ATAC-seq from embryonic day 18.5 (E18.5) mouse urogenital sinus (UGS), where Tbx18 is highly expressed. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17021 3 Samples FTP download: GEO (BEDGRAPH, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA507552 Series Accession: GSE123102 ID: 200123102 2469. Metabolic heterogeneity underlies reciprocal fates of TH17 cell stemness and plasticity [ATAC-seq] (Submitter supplied) TH17 cells in autoimmune disease are functionally and metabolically heterogeneous and contain a subset with stemness-associated features but lower anabolic metabolism and a reciprocal subset with higher metabolic activity that supports the transdifferentiation into TH1 cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 18 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497861 Series Accession: GSE121597 ID: 200121597 2470. The TFAP2C-Regulated OCT4 Naive Enhancer Is Involved in Human Germline Formation (Submitter supplied) Human primordial germ cells (hPGCs) are the first embryonic progenitors in the germ cell lineage, yet the molecular mechanisms required for hPGC formation are not well characterized. To identify regulatory regions in hPGC development, we used the assay for transposase-accessible chromatin using sequencing (ATAC-seq) to systematically characterize regions of open chromatin in hPGCs and hPGC-like cells (hPGCLCs) differentiated from human embryonic stem cells (hESCs). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 26 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493830 Series Accession: GSE120648 ID: 200120648 2471. RNA-seq and ATAC-seq analysis on mesenchymal stem cells (Submitter supplied) Mesenchymal stem cells (MSCs) are known to be heterogeneous; MSCs from different tissues show characteristic phenotypes. However, underlying molecular mechanisms of this MSC heterogeneity have not been clarified yet. In this study, to comprehensively understand transcriptome and epigenome of MSCs, we have analyzed multiple MSCs by RNA-seq and ATAC-seq. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 36 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479329 Series Accession: GSE116558 ID: 200116558 2472. Genome Wide Chromatin Mapping of accessibility (ATAC-seq) and H3K27ac histone modifications in CD56bright and CD56dim natural killer cells (Submitter supplied) We report the epigenenetic and transcriptional profile of blood natural killer cells. For chromatin analysis we analyze H3K27ac and accessability in CD56bright, CD56dimCD57minus, CD56dimCD57plus and CD56dim natural killer cells, purified from periphrial blood. We also examine transcription and accessability from tonsil derived ILC3 and ieILC1 Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 49 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA449077 Series Accession: GSE112813 ID: 200112813 2473. Single-cell multi-omic profiling of chromatin conformation and DNA methylome (Submitter supplied) Recent advances in the development of single cell epigenomic assays have facilitated the analysis of the gene regulatory landscapes in complex biological systems. Single-cell variations of methods such as DNA methylation-sequencing and ATAC-seq hold tremendous promise for delineating distinct cell types and identifying their critical cis-regulatory sequences. Emerging evidence in recent years has shown that in addition to cis-regulatory sequences, dynamic regulation of 3D chromatin conformation is a critical mechanism for the modulation of gene expressions during development and disease. more... Organism: Mus musculus; Homo sapiens Type: Methylation profiling by high throughput sequencing; Other Platforms: GPL21103 GPL25431 GPL20301 622 Samples FTP download: GEO (TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511892 Series Accession: GSE124391 ID: 200124391 2474. Regulatory chromatin landscape in Arabidopsis thaliana roots uncovered by coupling INTACT and ATAC-seq (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17639 6 Samples FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122772/ Series Accession: GSE122772 ID: 200122772 2475. ATAC-seq on 14-d-old WT col-0 Arabidopsis thaliana roots carrying INTACT (Submitter supplied) Background: There is a growing interest in the role of chromatin in acquiring and maintaining cell identity. Despite the ever growing availability of genome-wide gene expression data, understanding how transcription programs are established and regulated to define cell identity remains a puzzle. An important mechanism of gene regulation is the binding of transcription factors to specific DNA sequence motifs across the genome. more... Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17639 3 Samples FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506261 Series Accession: GSE122771 ID: 200122771 2476. RNA-seq from roots of 14 day old col-0 Arabidopsis thaliana carrying INTACT (Submitter supplied) Background: There is a growing interest in the role of chromatin in acquiring and maintaining cell identity. Despite the ever growing availability of genome-wide gene expression data, understanding how transcription programs are established and regulated to define cell identity remains a puzzle. An important mechanism of gene regulation is the binding of transcription factors to specific DNA sequence motifs across the genome. more... Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing Platform: GPL17639 3 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506260 Series Accession: GSE122770 ID: 200122770 2477. Chromatin accesibility in human DP3 thymocytes and T-ALL tumors (Submitter supplied) Long-range enhancers play an important role in the temporal and spatial control of gene expression and are deregulated in many cancers. Yet, the mechanisms that govern enhancer activity during development and oncogenesis remain poorly understood. In this study we analyze the chromatin accesibility of DP3 minus cells and three human T-ALL leukemia. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA511015 Series Accession: GSE124223 ID: 200124223 2478. PLZF limits enhancer activity during hematopoietic progenitor aging (Submitter supplied) PLZF (promyelocytic leukemia zinc finger) is a transcription factor acting as a global regulator of hematopoietic commitment. PLZF displays an epigenetic specificity by recruiting chromatin-modifying factors but little is known about its role in remodeling chromatin of cells committed towards a given specific hematopoietic lineage. In murine myeloid progenitors, we decipher a new role for PLZF in restraining active genes and enhancers by targeting acetylated lysine 27 of Histone H3 (H3K27ac). more... Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 GPL18480 41 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510975 Series Accession: GSE124190 ID: 200124190 2479. Chromatin accesibility in mice T-ALL tumors (Submitter supplied) Long-range enhancers play an important role in the temporal and spatial control of gene expression and are deregulated in many cancers. Yet, the mechanisms that govern enhancer activity during development and oncogenesis remain poorly understood. In this study we analyze the chromatin accesibility of mice T-ALL tumors. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 1 Sample FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE124nnn/GSE124175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA510948 Series Accession: GSE124175 ID: 200124175 2480. Coupled single-cell epigenome editing and profiling reveals causal gene regulatory networks [Perturb-ATAC (GBC/sgRNA)] (Submitter supplied) Here we present Perturb-ATAC, a method which combines multiplexed CRISPR interference or knockout with genome-wide chromatin accessibility profiling in single cells, based on the simultaneous detection of CRISPR guide RNAs and open chromatin sites by Assay of Transposase-accessible Chromatin with sequencing (ATAC-seq). We applied Perturb-ATAC to transcription factors (TFs), chromatin-modifying factors, and noncoding RNAs (ncRNAs) in ~3,700 single cells, encompassing more than 75 unique genotype-phenotype relationships. Organism: Homo sapiens Type: Other Platform: GPL15520 4208 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA478048 Series Accession: GSE116285 ID: 200116285 2481. Coupled single-cell epigenome editing and profiling reveals causal gene regulatory networks [Perturb-ATAC (ATAC)] (Submitter supplied) Here we present Perturb-ATAC, a method which combines multiplexed CRISPR interference or knockout with genome-wide chromatin accessibility profiling in single cells, based on the simultaneous detection of CRISPR guide RNAs and open chromatin sites by Assay of Transposase-accessible Chromatin with sequencing (ATAC-seq). We applied Perturb-ATAC to transcription factors (TFs), chromatin-modifying factors, and noncoding RNAs (ncRNAs) in ~3,700 single cells, encompassing more than 75 unique genotype-phenotype relationships. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL15520 GPL18573 4207 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116249/ Series Accession: GSE116249 ID: 200116249 2482. Coupled single-cell epigenome editing and profiling reveals causal gene regulatory networks [scATAC-seq] (Submitter supplied) Here we present Perturb-ATAC, a method which combines multiplexed CRISPR interference or knockout with genome-wide chromatin accessibility profiling in single cells, based on the simultaneous detection of CRISPR guide RNAs and open chromatin sites by Assay of Transposase-accessible Chromatin with sequencing (ATAC-seq). We applied Perturb-ATAC to transcription factors (TFs), chromatin-modifying factors, and noncoding RNAs (ncRNAs) in ~3,700 single cells, encompassing more than 75 unique genotype-phenotype relationships. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 288 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116248/ Series Accession: GSE116248 ID: 200116248 2483. Coupled single-cell epigenome editing and profiling reveals causal gene regulatory networks [Bulk ATAC-seq] (Submitter supplied) Here we present Perturb-ATAC, a method which combines multiplexed CRISPR interference or knockout with genome-wide chromatin accessibility profiling in single cells, based on the simultaneous detection of CRISPR guide RNAs and open chromatin sites by Assay of Transposase-accessible Chromatin with sequencing (ATAC-seq). We applied Perturb-ATAC to transcription factors (TFs), chromatin-modifying factors, and noncoding RNAs (ncRNAs) in ~3,700 single cells, encompassing more than 75 unique genotype-phenotype relationships. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116247/ Series Accession: GSE116247 ID: 200116247 2484. Genome-wide RNA-seq and ATAC-seq analysis of an in vivo human immune response to acute Zika virus infection (Submitter supplied) A longitudinal systems immunologic investigation of acute Zika virus infection in an individual infected with ZIKV while traveling to Caracas, Venezuela during the zika virus epidemic. Includes longitudinal RNA-seq and ATAC-seq characterization of innate and adaptive immune responses during an acute ZIKV infection. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 39 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA509151 Series Accession: GSE123541 ID: 200123541 2485. Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL16791 GPL20301 114 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96615/ Series Accession: GSE96615 ID: 200096615 2486. Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [ATAC-Seq] (Submitter supplied) We analyzed differential methylation (via WGBS) between four distinct human brain regions (NAcc-nucleus accumbens, BA9-dorsolateral prefrontal cortex, BA24-anterior cingulate cortex, and HC-hippocampus) in both sorted nuclei and intact tissues. We isolated neuronal and non-neuronal (glial) nuclei from the same six individuals for each tissue via FACS using the neuronal marker, NeuN. Additionally, we performed WGBS from non-sorted tissues from these same brain regions in a total of 12 individuals (BA9 n = 9; BA24 n = 5; HC n = 6; NAcc n = 7). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 22 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379176 Series Accession: GSE96614 ID: 200096614 2487. Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [RNA-Seq] (Submitter supplied) We analyzed differential methylation (via WGBS) between four distinct human brain regions (NAcc-nucleus accumbens, BA9-dorsolateral prefrontal cortex, BA24-anterior cingulate cortex, and HC-hippocampus) in both sorted nuclei and intact tissues. We isolated neuronal and non-neuronal (glial) nuclei from the same six individuals for each tissue via FACS using the neuronal marker, NeuN. Additionally, we performed WGBS from non-sorted tissues from these same brain regions in a total of 12 individuals (BA9 n = 9; BA24 n = 5; HC n = 6; NAcc n = 7). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL20301 20 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379175 Series Accession: GSE96613 ID: 200096613 2488. Neuronal brain region-specific DNA methylation and chromatin accessibility are associated with neuropsychiatric trait heritability [Bisulfite-Seq] (Submitter supplied) We analyzed differential methylation (via WGBS) between four distinct human brain regions (NAcc-nucleus accumbens, BA9-dorsolateral prefrontal cortex, BA24-anterior cingulate cortex, and HC-hippocampus) in both sorted nuclei and intact tissues. We isolated neuronal and non-neuronal (glial) nuclei from the same six individuals for each tissue via FACS using the neuronal marker, NeuN. Additionally, we performed WGBS from non-sorted tissues from these same brain regions in a total of 12 individuals (BA9 n = 9; BA24 n = 5; HC n = 6; NAcc n = 7). more... Organism: Homo sapiens Type: Methylation profiling by high throughput sequencing Platform: GPL16791 72 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379177 Series Accession: GSE96612 ID: 200096612 2489. Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells [ATAC-seq] (Submitter supplied) Transcriptional regulatory networks (TRNs) provide insight into cellular behavior by describing interactions between transcription factors (TFs) and their gene targets. The Assay for Transposase Accessible Chromatin (ATAC)-seq, coupled with transcription-factor motif analysis, provides indirect evidence of chromatin binding for hundreds of TFs genome-wide. Here, we propose methods for TRN inference in a mammalian setting, using ATAC-seq data to influence gene expression modeling. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 33 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA453783 Series Accession: GSE113721 ID: 200113721 2490. Leveraging chromatin accessibility for transcriptional regulatory network inference in T Helper 17 Cells [RNA-seq] (Submitter supplied) Transcriptional regulatory networks (TRNs) provide insight into cellular behavior by describing interactions between transcription factors (TFs) and their gene targets. The Assay for Transposase Accessible Chromatin (ATAC)-seq, coupled with transcription-factor motif analysis, provides indirect evidence of chromatin binding for hundreds of TFs genome-wide. Here, we propose methods for TRN inference in a mammalian setting, using ATAC-seq data to influence gene expression modeling. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL13112 GPL11002 GPL17021 99 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA453784 Series Accession: GSE113720 ID: 200113720 2491. Chromatin accessibility by ATAC in wild type versus knockout GC B cells (Submitter supplied) Using ATAC-seq, we identified differential chromatin accessibility comparing LSD1 wild type versus knockout GC B cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 5 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA488487 Series Accession: GSE119222 ID: 200119222 2492. ATAC-seq of 8-cell embryo samples (Submitter supplied) We hypothesized that LincGET/CARM1 complex activates ICM-specific genes at the 8-cell stage. And we examined chromatin accessibility of these genes by preforming an assay for transposase-accessible chromatin with high-throughput sequencing (ATAC-seq) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 3 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433672 Series Accession: GSE110419 ID: 200110419 2493. Epigenetic control of genes and transposable elements (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21273 GPL21493 GPL19057 114 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108091/ Series Accession: GSE108091 ID: 200108091 2494. Epigenetic control of genes and transposable elements [ATAC-seq] (Submitter supplied) Epigenetic control is an elaborate system the cell uses to control aspects of cell type and gene control. Histones and DNA are chemically modified to signal epigenetic information as to whether a gene is active or inactive, and so maintain cell type stability. Whilst epigenetic control of genes has been explored, the control of the rest of the genome is less well explored. The bulk of DNA and chromatin consists of repetitive elements, not genes, and these TEs must be tightly regulated to provide structure and function for nearby genes and, ultimately, cell type control. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 20 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108086/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA422437 Series Accession: GSE108086 ID: 200108086 2495. From pioneer to repressor: Bimodal foxd3 activity dynamically remodels neural crest regulatory landscape in vivo (Submitter supplied) The neural crest (NC) is a transient embryonic stem cell population characterised by its multipotency and broad developmental potential. Here, we perform NC-specific transcriptional and epigenomic profiling of foxd3-mutant versus wild-type cells in vivo to define the gene regulatory circuits controlling NC specification. Together with global binding analysis obtained by foxd3 biotin-ChIP and single cell profiles of foxd3-expressing premigratory NC, our analysis shows that during early steps of NC formation, foxd3 acts globally as a pioneer factor to prime the onset of genes regulating NC specification and migration by re-arranging the chromatin landscape, opening cis-regulatory elements and reshuffling nucleosomes. more... Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20828 GPL18413 GPL14875 151 Samples FTP download: GEO (BED, BW, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417594 Series Accession: GSE106676 ID: 200106676 2496. Induced human forebrain neurons overexpressing MAPT demonstrate chromatin structure alterations (Submitter supplied) We assessed whether forebrain neurons from human induced pluripotent stem cells (iNs) could recapitulate the tau-related epigenomic changes that we found in human brain H3K9ac data (Synapse ID: syn4896408). We used an existing iN model system whereby we can virally transduce NGN2-induced neurons with lentivirus to modulate expression of specific genes. Here, we overexpressed the 4R isoform of human MAPT, which induces AD-related features such as the intracellular accumulation of phosphorylated tau. more... Organism: Homo sapiens Type: Other Platform: GPL16791 36 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA381702 Series Accession: GSE97409 ID: 200097409 2497. A DNA methylation reader complex that enhances gene transcription (Submitter supplied) DNA methylation generally functions as a repressive transcriptional signal, but it is also​ ​known to activate gene expression. In either case, the downstream factors remain​ ​largely unknown. By using comparative interactomics, we isolated proteins in Arabidopsis​ ​thaliana that associate with methylated DNA. Two SU(VAR)3-9 homologs, the transcriptional​ ​antisilencing factor SUVH1, and SUVH3, were among the methyl reader candidates. more... Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL17639 GPL21785 89 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427202 Series Accession: GSE108414 ID: 200108414 2498. Factor cooperation for chromosome discrimination in Drosophila (Submitter supplied) Transcription regulators select their genomic binding sites from a large pool of similar, non‑functional sequences. Although general principles that allow such discrimination are known, the complexity of DNA elements often precludes a prediction of functional sites. The process of dosage compensation in Drosophila allows exploring the rules underlying binding site selectivity. The male-specific-lethal (MSL) Dosage Compensation Complex selectively binds to some 300 X-chromosomal ‘High Affinity Sites’ (HAS) containing GA‑rich ‘MSL recognition elements’ (MREs), but disregards thousands of other MRE sequences in the genome. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19951 68 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490090 Series Accession: GSE119708 ID: 200119708 2499. DNA accessibility in CD8+ tumour-infiltrating T cells treated with Phenelzine. (Submitter supplied) Phenelzine treatments were conducted in tumour-bearing Balb/c mice and then 4T1 tumours were acquired. CD8+ tumour-infiltrating T cells were positively selected by using mouse CD8a (Ly-2) microbeads and isolated by autoMACS Separator with recommended programs. Then isolated CD8 T cells were stimulated by PMA and Ionomycin. Global ATAC-seq analysis was performed to identify the dynamic changes in chromatin accessibility of tumour-filtrating CD8 T cells after phenelzine treatment. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA421194 Series Accession: GSE107724 ID: 200107724 2500. Transcription factor activity and nucleosome organisation in mitosis (Submitter supplied) Mitotic bookmarking transcription factors (BFs) maintain the capacity to bind to their targets during mitosis, despite major rearrangements of the chromatin. While they were thought to propagate gene regulatory information through mitosis by statically occupying their DNA targets, it has recently become clear that BFs are highly dynamic in mitotic cells. This represents both a technical and a conceptual challenge to study and understand the function of BFs: first, formaldehyde has been suggested to be unable to efficiently capture these transient interactions, leading to profound contradictions in the literature; second, if BFs are not permanently bound to their targets during mitosis, it becomes unclear how they convey regulatory information to daughter cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 4 related Platforms 97 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505682 Series Accession: GSE122589 ID: 200122589 2501. Aging alters the epigenetic asymmetry of HSC division [scRNA-Seq] (Submitter supplied) Hematopoietic stem cells (HSCs) balance self-renewal and differentiation to maintain homeostasis. With aging, the frequency of polar HSCs decreases. Cell polarity in HSCs is controlled by the activity of the small RhoGTPase Cdc42. Here we demonstrate, using a comprehensive set of paired daughter cell analyses that include single cell 3D-confocal imaging, single cell transplants, single cell RNA-seq as well as single cell ATAC-seq, that the outcome of HSC divisions is strongly linked to the polarity status before mitosis, which is in turn determined by the level of the activity Cdc42 in stem cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 293 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479965 Series Accession: GSE116708 ID: 200116708 2502. Aging alters the epigenetic asymmetry of HSC division [scATAC-Seq] (Submitter supplied) Hematopoietic stem cells (HSCs) balance self-renewal and differentiation to maintain homeostasis. With aging, the frequency of polar HSCs decreases. Cell polarity in HSCs is controlled by the activity of the small RhoGTPase Cdc42. Here we demonstrate, using a comprehensive set of paired daughter cell analyses that include single cell 3D-confocal imaging, single cell transplants, single cell RNA-seq as well as single cell ATAC-seq, that the outcome of HSC divisions is strongly linked to the polarity status before mitosis, which is in turn determined by the level of the activity Cdc42 in stem cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 48 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479966 Series Accession: GSE116707 ID: 200116707 2503. c-Maf is an essential commitment factor for IL-17-producing gd T cells [ATAC-seq] (Submitter supplied) IL-17-producing gd T (Tgd17) cells are early mediators of immunity and autoimmunity that undergo effector programming in the thymus. While Vg subset-restricted regulators of Tgd17 specialization are known, a universal type 17 commitment factor for all gd T cells remains undefined. In this study, we identify the transcription factor c-Maf as an essential and uniform regulator of Tgd17 differentiation and maintenance. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493056 Series Accession: GSE120426 ID: 200120426 2504. ATAC-Seq profiling of progenitor exhausted and terminally exhausted CD8+ T-cells from tumors and chronic viral infection (Submitter supplied) Epigenetically similar subpopulations of exhausted CD8+ T-cells are found in chronic viral infection and tumors Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE123nnn/GSE123236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA507855 Series Accession: GSE123236 ID: 200123236 2505. Osteogenesis depends on commissioning of a network of stem cell transcription factors that act as repressors of adipogenesis (Submitter supplied) Here we have used both chromatin accessibility and enhancer activity marks to study enhancer activation and changes in transcriptional networks during the differentiation of human MSC into osteoblasts and adipocytes. We demonstrate that adipogenesis is driven by considerable remodeling of the chromatin landscape and de novo activation of enhancers, while osteogenesis involves activation of pre-established enhancers. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18460 GPL24676 170 Samples FTP download: GEO (BED, TXT, ZIP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450599 Series Accession: GSE113253 ID: 200113253 2506. Precocious expression of Blimp1 in the B cell lineage causes autoimmunity (Submitter supplied) The transcription factor Blimp1 is not only an essential regulator of plasma cells, but also a risk factor for the development of autoimmune disease. Here, we demonstrate that the mouse Prdm1 (Blimp1) gene was partially activated at the chromatin and transcription level in early B cell development, although mature Prdm1 mRNA did not accumulate due to posttranscriptional regulation. By analyzing a mouse model that facilitated ectopic Blimp1 protein expression throughout B lymphopoiesis, we could demonstrate that Blimp1 impaired B cell development by interfering with the B cell gene expression program, while leading to an increased abundance of plasma cells by promoting premature plasmablast differentiation of immature and mature B cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL13112 GPL17021 17 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437913 Series Accession: GSE111692 ID: 200111692 2507. Enhancer profiling of chronic lymphocytic leukemia cells (Submitter supplied) Enhancer profiling has emerged as a powerful approach for discovering the cis-regulatory elements that define transcriptional core regulatory circuits. Characteristic biochemical and biophysical attributes of chromatin mark active enhancer elements, which can be leveraged with genome-wide assay technologies for discovery. This includes chromatin immunoprecipitation followed by sequencing (ChIP-seq) for histone H3 acetylated lysine 27 (H3K27ac). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 36 Samples FTP download: GEO (BEDGRAPH, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490189 Series Accession: GSE119744 ID: 200119744 2508. Reproducible inference of transcription factor footprints in ATAC-seq and DNase-seq datasets via protocol-specific bias modeling (Submitter supplied) DNase-seq and ATAC-seq are broadly used methods to assay open chromatin regions genome-wide. The single nucleotide resolution of DNase-seq has been further exploited to infer transcription factor binding sites (TFBS) in regulatory regions via footprinting. Recent studies have demonstrated the sequence bias of DNase I and its adverse effects on footprinting efficiency. However, footprinting and the impact of sequence bias have not been extensively studied for ATAC-seq. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL16791 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108513/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427530 Series Accession: GSE108513 ID: 200108513 2509. Engrafted parenchymal brain macrophages differ from microglia in transcriptome, chromatin landscape and response to challenge (ATAC-Seq) (Submitter supplied) Microglia are yolk sac-derived macrophages residing in the parenchyma of brain and spinal cord, where they interact with neurons and other glial cells by constantly probing their surroundings with dynamic extensions. After different conditioning paradigms and bone marrow (BM) or hematopoietic stem cell (HSC) transplantation, graft-derived cells seed the brain and persistently contribute to the parenchymal brain macrophage compartment. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA506259 Series Accession: GSE122768 ID: 200122768 2510. Dynamic molecular monitoring reveals that SWI/SNF mutations mediate resistance to ibrutinib plus venetoclax in mantle cell lymphoma [ATAC-Seq] (Submitter supplied) Ibrutinib plus venetoclax is a highly effective combination in mantle cell lymphoma. However, strategies to enable the evaluation of therapeutic response are required. Our prospective analyses of patients within the AIM study revealed genomic profiles that clearly dichotomized responders and non-responders. Mutations in ATM were present in most patients who achieved a complete response, while chromosome 9p21.1-p24.3 loss and/or mutations in components of the SWI/SNF chromatin remodeling complex were present in all patients with primary resistance and 2/3 patients with relapsed disease. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122510/ Series Accession: GSE122510 ID: 200122510 2511. Role of interleukin 2 on thymic Foxp3+CD4+ regulatory T (Treg) cell chromatin modeling (Submitter supplied) Interleukine 2 (IL-2) is still one of the most interesting cytokines in T cell biology with its ability to control immune homeostasis by maintaining the functional identity of Foxp3+ regulatory T (Treg) cells and the expansion of activated conventional T (Tconv) cells. Yet, how IL-2 exactly enables Treg cells to suppress autoreactive Tconv cells and to maintain their identity is unclear. Using a mouse model in which IL-2 signaling via its high affinity receptor CD25 is selectively impaired, the “Il2ramut/mut” mouse, we report that Treg cells that only receive low IL-2 signals keep Il2ramut/mut but not WT Tconv cells “in check”, suggesting equal IL-2 signals in Treg and Tconv cells is essential to safeguard immune homeostasis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA496500 Series Accession: GSE121263 ID: 200121263 2512. Role of interleukin 2 on chromatin landscapes in lymph node Foxp3+ CD4+ regulatory (Treg) cells (Submitter supplied) Interleukine 2 (IL-2) is still one of the most interesting cytokines in T cell biology with its ability to control immune homeostasis by maintaining the functional identity of Foxp3+ regulatory T (Treg) cells and the expansion of activated conventional T (Tconv) cells. Yet, how IL-2 exactly enables Treg cells to suppress autoreactive Tconv cells and to maintain their identity is unclear. Using a mouse model in which IL-2 signaling via its high affinity receptor CD25 is selectively impaired, the “Il2ramut/mut” mouse, we report that Treg cells that only receive low IL-2 signals keep Il2ramut/mut but not WT Tconv cells “in check”, suggesting equal IL-2 signals in Treg and Tconv cells is essential to safeguard immune homeostasis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA400471 Series Accession: GSE103193 ID: 200103193 2513. scRNA-seq, bulk RNA-seq, and ATAC-seq data from progenitor exhausted and terminally exhausted CD8+ T cells from tumors and chronic viral infection (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 72 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122713/ Series Accession: GSE122713 ID: 200122713 2514. Effect of chromatin accessibility due to loss of PIN1 (Submitter supplied) The goal of this study was to determine the chromatin accessibility difference between WT and PIN1 knockout mouse embryonic fibroblasts. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA495629 Series Accession: GSE121094 ID: 200121094 2515. Role of interleukin 2 on Foxp3+CD4+ regulatory T (Treg) cell gene expression and chromatin modeling in thymus and lymph node, and on SATB1 DNA binding in single positive CD4 thymocytes (Submitter supplied) Interleukine 2 (IL-2) is still one of the most interesting cytokines in T cell biology with its ability to control immune homeostasis by maintaining the functional identity of Foxp3+ regulatory T (Treg) cells and the expansion of activated conventional T (Tconv) cells. Yet, how IL-2 exactly enables Treg cells to suppress autoreactive Tconv cells and to maintain their identity is unclear. Using a mouse model in which IL-2 signaling via its high affinity receptor CD25 is selectively impaired, the “Il2ramut/mut” mouse, we report that Treg cells that only receive low IL-2 signals keep Il2ramut/mut but not WT Tconv cells “in check”, suggesting equal IL-2 signals in Treg and Tconv cells is essential to safeguard immune homeostasis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by array Platforms: GPL17021 GPL20775 28 Samples FTP download: GEO (CEL, CHP, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103217/ Series Accession: GSE103217 ID: 200103217 2516. Differential epigenetic profiling of human aortic endothelial cells (HAEC) in response to shear stress forces (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 32 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112340/ Series Accession: GSE112340 ID: 200112340 2517. Differential epigenetic profiling of human aortic endothelial cells (HAEC) in response to shear stress forces using ChIP-Seq of H3K27ac (Submitter supplied) Biomechanical cues dynamically control major cellular processes but whether genetic variants actively participate in the mechano-sensing mechanisms remain unexplored. Vascular homeostasis is tightly regulated by hemodynamic forces. Exposure to disturbed blood flow at arterial sites of branching and bifurcation causes constant activation of vascular endothelium contributing to the development of atherosclerosis, the major cause of coronary artery disease (CAD). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 20 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445765 Series Accession: GSE112336 ID: 200112336 2518. Differential epigenetic profiling of human aortic endothelial cells (HAEC) in response to shear stress forces using ATAC-Seq (Submitter supplied) Biomechanical cues dynamically control major cellular processes but whether genetic variants actively participate in the mechano-sensing mechanisms remain unexplored. Vascular homeostasis is tightly regulated by hemodynamic forces. Exposure to disturbed blood flow at arterial sites of branching and bifurcation causes constant activation of vascular endothelium contributing to the development of atherosclerosis, the major cause of coronary artery disease (CAD). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445695 Series Accession: GSE112328 ID: 200112328 2519. LXR Suppresses Inflammatory Gene Expression and Neutrophil Migration through cis-Repression and Cholesterol Efflux [ATAC-Seq] (Submitter supplied) The activation of Liver X Receptor (LXR) promotes cholesterol efflux and repression of inflammatory genes with anti-atherogenic consequences. The mechanisms underlying repressive activity of LXR are controversial and have been attributed to cholesterol efflux or to transrepression of Activator Protein-1 (AP-1) activity. Here, we find that cholesterol efflux contributes to LXR repression, while direct repressive functions of LXR also play a key role but are independent of AP-1. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432542 Series Accession: GSE109998 ID: 200109998 2520. LXR Suppresses Inflammatory Gene Expression and Neutrophil Migration through cis-Repression and Cholesterol Efflux [RNA-Seq] (Submitter supplied) The activation of Liver X Receptor (LXR) promotes cholesterol efflux and repression of inflammatory genes with anti-atherogenic consequences. The mechanisms underlying repressive activity of LXR are controversial and have been attributed to cholesterol efflux or to transrepression of Activator Protein-1 (AP-1) activity. Here, we find that cholesterol efflux contributes to LXR repression, while direct repressive functions of LXR also play a key role but are independent of AP-1. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432543 Series Accession: GSE109997 ID: 200109997 2521. Parkinson-associated SNCA enhancer variants revealed by open chromatin in mouse dopamine neurons (Submitter supplied) The progressive loss of midbrain (MB) dopaminergic (DA) neurons defines the motor features of Parkinson disease (PD) and modulation of risk by common variation in PD has been well established through GWAS. Anticipating that a fraction of PD-associated genetic variation mediates their effects within this neuronal population, we acquired open chromatin signatures of purified embryonic mouse MB DA neurons. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16417 GPL17021 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA505267 Series Accession: GSE122450 ID: 200122450 2522. Gut Adaptation of Ahr Expression Cell-intrinsically Restricts Group 2 Innate Lymphoid Cell Function (Submitter supplied) Innate lymphoid cells (ILCs) are important for mucosal immunity. The intestine harbors all ILC subsets; however, how these cells orchestrate each other to achieve immune homeostasis and mount appropriate immunity during infection remains elusive. Here, we show that the adaptation of the aryl hydrocarbon receptor (Ahr) expression in the gut is a key regulatory mode for the host to keep the ILC balance. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 32 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489282 Series Accession: GSE119461 ID: 200119461 2523. HIV-1 permanently disrupts homeostatic ILCs and expands inflammatory TCF7-dependent memory NK cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 55 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122326/ Series Accession: GSE122326 ID: 200122326 2524. Widespread conservation of chromatin accessibility and transcription factor binding in human and chimpanzee induced pluripotent stem cells (Submitter supplied) Changes in gene regulation have been shown to contribute to phenotypic differences between closely related species, most notably in primates. It is likely that a subset of inter-species regulatory differences can be explained by changes in chromatin accessibility and transcription factor binding, yet there is a paucity of comparative data sets with which to investigate this. Using ATAC-seq, we profiled genome-wide chromatin accessibility in a matched set of 6 human and 6 chimpanzee (Pan troglodytes, our closest living relative) induced pluripotent stem cells from which we have previously collected gene expression data. more... Organism: Pan troglodytes; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19148 GPL16791 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE122nnn/GSE122319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA504642 Series Accession: GSE122319 ID: 200122319 2525. Joint single-cell chromatin and protein profiling reveals environmental regulation of epigenomic heterogeneity [Tumor_stained_for_EpCam_HIF1a] (Submitter supplied) A novel scATAC-seq approach, Multi-Index single cell ATAC-seq (MI-ATAC), in which we not only index the accessible chromatin of individual cells, but also index their protein expression using index Fluorescence Activated Cell Sorting (FACS). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 960 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445377 Series Accession: GSE112246 ID: 200112246 2526. Joint single-cell chromatin and protein profiling reveals environmental regulation of epigenomic heterogeneity [Tumor_stained_for_EpCam_CD45] (Submitter supplied) A novel scATAC-seq approach, Multi-Index single cell ATAC-seq (MI-ATAC), in which we not only index the accessible chromatin of individual cells, but also index their protein expression using index Fluorescence Activated Cell Sorting (FACS). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 384 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445378 Series Accession: GSE112245 ID: 200112245 2527. Joint single-cell chromatin and protein profiling reveals environmental regulation of epigenomic heterogeneity [K562_GATA2] (Submitter supplied) A novel scATAC-seq approach, Multi-Index single cell ATAC-seq (MI-ATAC), in which we not only index the accessible chromatin of individual cells, but also index their protein expression using index Fluorescence Activated Cell Sorting (FACS). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 288 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112200/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445237 Series Accession: GSE112200 ID: 200112200 2528. Joint single-cell chromatin and protein profiling reveals environmental regulation of epigenomic heterogeneity [GM_single_cell_unstimulated] (Submitter supplied) A novel scATAC-seq approach, Multi-Index single cell ATAC-seq (MI-ATAC), in which we not only index the accessible chromatin of individual cells, but also index their protein expression using index Fluorescence Activated Cell Sorting (FACS). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 384 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445235 Series Accession: GSE112198 ID: 200112198 2529. Joint single-cell chromatin and protein profiling reveals environmental regulation of epigenomic heterogeneity [GM_MI-ATAC_unstained] (Submitter supplied) A novel scATAC-seq approach, Multi-Index single cell ATAC-seq (MI-ATAC), in which we not only index the accessible chromatin of individual cells, but also index their protein expression using index Fluorescence Activated Cell Sorting (FACS). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 191 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445231 Series Accession: GSE112195 ID: 200112195 2530. Joint single-cell chromatin and protein profiling reveals environmental regulation of epigenomic heterogeneity [4T1-Splenocyte] (Submitter supplied) A novel scATAC-seq approach, Multi-Index single cell ATAC-seq (MI-ATAC), in which we not only index the accessible chromatin of individual cells, but also index their protein expression using index Fluorescence Activated Cell Sorting (FACS). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 192 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445230 Series Accession: GSE112194 ID: 200112194 2531. Joint single-cell chromatin and protein profiling reveals environmental regulation of epigenomic heterogeneity [GM12878] (Submitter supplied) A novel scATAC-seq approach, Multi-Index single cell ATAC-seq (MI-ATAC), in which we not only index the accessible chromatin of individual cells, but also index their protein expression using index Fluorescence Activated Cell Sorting (FACS). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA439283 Series Accession: GSE112090 ID: 200112090 2532. Simultaneous epitope and epigenetic profile measurements with multi-index single-cell ATAC-sequencing [4T1] (Submitter supplied) A novel scATAC-seq approach, Multi-Index single cell ATAC-seq (MI-ATAC), in which we not only index the accessible chromatin of individual cells, but also index their protein expression using index Fluorescence Activated Cell Sorting (FACS). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 14 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA439285 Series Accession: GSE112089 ID: 200112089 2533. Novel Alterations in Chromatin Structure during Aging Reveal Cell-Specific Differential Expression of SUMO Proteins (Submitter supplied) We investigated the chromatin accessibility of primary human adipose-derived stem cells (ASCs) and fibroblasts during chronological aging using ATAC-seq technology. our data suggest a significant role for nucleosome positioning in sumoylation pathway regulation in response to stress during aging of adult stem cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 21 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE105nnn/GSE105077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA414604 Series Accession: GSE105077 ID: 200105077 2534. RA and BMP4 cooperate with p63 to alter chromatin dynamics during surface epithelial commitment (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL20301 61 Samples FTP download: GEO (BED, BROADPEAK, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119997/ Series Accession: GSE119997 ID: 200119997 2535. Genome-wide chromatin accessibility in pluripotent and surface ectoderm cells with and without p63 (Submitter supplied) Purpose: Evaluate changes in chromatin accessibility between human embryonic stem cells and surface ectoderm cells with and without the transcription factor p63. Method: Chromatin accessibility profiles for human embryonic stem cells and surface ectoderm with and without p63 were generated by deep sequencing, in duplicate, with the Illumina NextSeq sequencer. Quality reads were assessed by fastq. Reads were aligned using Bowtie2, PCR duplicates and mitochondrial DNA were discarded, and peak calling was completed using MACS2. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491198 Series Accession: GSE119996 ID: 200119996 2536. Stem cell differentiation trajectories in Hydra resolved at single cell resolution (Submitter supplied) The adult Hydra polyp continuously renews all of its cells using three separate stem cell populations but the genetic pathways enabling these dynamic tissue properties are not well understood. We used Drop-seq to sequence 24,985 Hydra cells and identified the molecular signatures of a broad spectrum of cell states, from stem cells to terminally differentiated cells. We constructed differentiation trajectories for each cell lineage and identified the transcription factors expressed along these trajectories, thus creating a comprehensive map of all developmental lineages in the adult animal. more... Organism: Hydra vulgaris Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL25713 GPL25712 24 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497876 Series Accession: GSE121617 ID: 200121617 2537. N6-methyladenine DNA Modification in Glioblastoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Methylation profiling by high throughput sequencing Platforms: GPL11154 GPL20301 50 Samples FTP download: GEO (BED, BIGWIG, BW, NARROWPEAK, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118093/ Series Accession: GSE118093 ID: 200118093 2538. N6-methyladenine DNA Modification in Glioblastoma [ATAC-seq] (Submitter supplied) Genetic drivers of cancer can be dysregulated through epigenetic modifications of DNA. While the critical role of DNA 5-methylcytosine (5mC) in the regulation of transcription is recognized, the functions of other non-canonical DNA modifications remain obscure. Here, we report the identification of novel N(6)-methyladenine (N6-mA) DNA modifications in human tissues and implicate this epigenetic regulation in human disease, the highly malignant brain cancer, glioblastoma. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 6 Samples FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484396 Series Accession: GSE118092 ID: 200118092 2539. Disruption of the TFAP2A regulatory domain causes Branchio-Oculo-Facial Syndrome (BOFS) and illuminates pathomechanisms for other human neurocristopathies [ATAC-seq] (Submitter supplied) BOFS is a rare congenital syndrome that arises due to defects during neural crest (NC) development and is thus considered as a human neurocristopathy. All reported BOFS cases are caused by heterozygous mutations within TFAP2A. Here we describe a unique BOFS patient carrying a de novo heterozygous inversion in which one of the breakpoints is located 40 kb downstream of TFAP2A. Using in vitro and in vivo NC developmental models, we uncovered that TFAP2A is located within a large Topologically Associating Domain (TAD) containing enhancers essential for TFAP2A expression in NC cells (NCC). more... Organism: Gallus gallus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19005 GPL16791 3 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427537 Series Accession: GSE108517 ID: 200108517 2540. Genomic profiling of chromatin accessibility in gd T cells during thymic development (Submitter supplied) Innate-like gd T effector subsets are exported from the thymus as “memory-like” cells prewired for rapid, specialized function. Previously, we showed that emergent gd subsets distinguished by TCRg and TCRd usage in the fetal and adult thymus possess distinct global transcriptomes and the subset-specific combinatorial expression of High Mobility Group box transcription factors (HMG TFs) shown as a primary determinant of gd effector differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 5 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA301047 Series Accession: GSE74637 ID: 200074637 2541. Identification of regulatory elements from nascent transcription using dREG (Submitter supplied) Our genomes encode a wealth of transcription initiation regions (TIRs) that can be identified by their distinctive patterns of transcription initiation. We previously introduced dREG to identify TIRs using PRO-seq data. Here we introduce an efficient new implementation of dREG that uses PRO-seq data to identify both uni- and bidirectionally transcribed TIRs with 70% improvements in accuracy, 3-4-fold higher resolution, and >100-fold increases in computational efficiency. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA501902 Series Accession: GSE121993 ID: 200121993 2542. Megadomains and superloops form dynamically during X-chromosome inactivation but are dispensable for silencing and escape (Submitter supplied) The mammalian inactive X-chromosome (Xi) is structurally distinct from all other chromosomes and serves as a model for higher order chromosome organization. The Xi lacks strong topologically associated domains and is instead organized into megadomains and superloops mediated in part by the noncoding loci, Dxz4 and Firre. Their functional significance is presently unclear, though one study suggests that they permit Xi genes to escape silencing. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL16417 GPL17021 GPL13112 65 Samples FTP download: GEO (BED, BEDGRAPH, BW, HIC, XLS, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479812 Series Accession: GSE116649 ID: 200116649 2543. Molecular Signature of CAID Syndrome: Noncanonical Roles of SGO1 in Regulation of TGF-β Signaling and Epigenomics. [ATAC-seq] (Submitter supplied) ATAC_seq of human dermal fibroblasts from CAID patients passage 8 and passage 14 Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434081 Series Accession: GSE110576 ID: 200110576 2544. Genome-wide chromatin accessibility and transcriptome profiling shows that minimal epigenome changes lead to coordinated transcriptional dysregulation of hedgehog signaling in Danforth’s short tail mice (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 14 Samples FTP download: GEO (BED, BROADPEAK, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108804/ Series Accession: GSE108804 ID: 200108804 2545. Genome-wide chromatin accessibility and transcriptome profiling shows that minimal epigenome changes lead to coordinated transcriptional dysregulation of hedgehog signaling in Danforth’s short tail mice (RNA-seq) (Submitter supplied) Danforth’s short tail (Sd) mice provide an excellent model for investigating the underlying etiology of human caudal birth defects, which affect 1 in 10,000 live births. Sd animals exhibit aberrant axial skeleton, urogenital, and gastrointestinal development similar to human caudal syndromes including urorectal septum malformation, caudal regression, VACTERL association, and persistent cloaca. Previous studies have shown that the Sd mutation results from an endogenous retroviral (ERV) insertion upstream of the Ptf1a gene causing its ectopic expression at E9. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA428787 Series Accession: GSE108803 ID: 200108803 2546. Genome-wide chromatin accessibility and transcriptome profiling shows that minimal epigenome changes lead to coordinated transcriptional dysregulation of hedgehog signaling in Danforth’s short tail mice (ATAC-seq) (Submitter supplied) Danforth’s short tail (Sd) mice provide an excellent model for investigating the underlying etiology of human caudal birth defects, which affect 1 in 10,000 live births. Sd animals exhibit aberrant axial skeleton, urogenital, and gastrointestinal development similar to human caudal syndromes including urorectal septum malformation, caudal regression, VACTERL association, and persistent cloaca. Previous studies have shown that the Sd mutation results from an endogenous retroviral (ERV) insertion upstream of the Ptf1a gene causing its ectopic expression at E9. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA428788 Series Accession: GSE108802 ID: 200108802 2547. CTCF sites display cell cycle dependent dynamics in factor binding and nucleosome positioning (Submitter supplied) Using 5C, ATAC-seq and CUT&RUN we find loss of CTCF binding, CTCF loops and TADs in mitosis Organism: Homo sapiens Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL15520 GPL11154 GPL20301 160 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA498618 Series Accession: GSE121840 ID: 200121840 2548. Chromatin and tissue plasticity precede commitment to intestinal differentiation during endoderm development (Submitter supplied) Intestinal differentiation during endoderm development We used RNA-sequencing to profile gene expression changes during the embryonic development of the gastrointestinal tract. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 74 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA475296 Series Accession: GSE115541 ID: 200115541 2549. ATAC-seq of YB5 cells treated with HH1 (Submitter supplied) ATAC-seq was performed after YB5 cells were treated with DMSO or HH1 Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA453383 Series Accession: GSE113608 ID: 200113608 2550. SUMO safeguards somatic and pluripotent cell identities by enforcing distinct chromatin states (Submitter supplied) Purposes: (1) compare the SUMO chromatin landscape between mouse embryonic fibroblasts (MEFs) and embryonic stem cells (ESc) (2) Decipher how hyposumoylation enhances MEF to induced pluripotent stem cells (iPSc) reprogramming (3) Decipher how hyposumoylation enhances ESc to 2C-like cells conversion. Methods : (1) ChIP-seq in MEFs and ESc for SUMO isoforms and histone marks. (2) ChIP-seq for transcription factors and histone marks at day 4 of MEF to iPSc reprogramming comparing wild type (shCtrl) and hyposumoylated cells (shUbc9). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 117 Samples FTP download: GEO (BED, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA386997 Series Accession: GSE99009 ID: 200099009 2551. Chromatin Profiling of Micro-dissected Mouse Embryonic Heart and CPP regions (Submitter supplied) Co-development of the lungs and heart underlies key evolutionary innovations in the transition to terrestrial life. Cardiac specializations that support pulmonary circulation, including the atrial septum, are generated by second heart field (SHF) cardiopulmonary progenitors (CPPs). It has been presumed that transcription factors required in the SHF for cardiac septation, e.g. Tbx5, directly drive a cardiac morphogenesis gene regulatory network. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 20 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490555 Series Accession: GSE119885 ID: 200119885 2552. Characterisation of three mouse cell lines by ATAC-seq (MV+, RAG and β-TC3 cells). (Submitter supplied) Chromatin accessibility profiling using ATAC-seq to study and identify novel Cis-regulatory elements of MV+ a lens epithelium cell line, RAG a mouse kidney adenocarcinoma cell line and β-TC3 cell a mouse pancreatic β cell, derived from mouse insulinoma. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 6 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489870 Series Accession: GSE119656 ID: 200119656 2553. A non-canonical GLTSCR1L-containing BAF complex mediates H3K27ac-dependent enhancer activities (Submitter supplied) H3K27ac is known to associate with regulatory active enhancers, but it’s exact role in enhancer function remains elusive. Using mass spectrometry-based interaction proteomics, we identified the Super Elongation Complex (SEC) and GBAF, a non-canonical GLTSCR1L- and BRD9-containing SWI/SNF chromatin remodeling complex, to be major interactors of H3K27ac. Our interaction proteomics analysis refined the composition of GBAF by adding BCL7A/B/C as a new subunit. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other Platforms: GPL11154 GPL18573 38 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE121nnn/GSE121351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA497106 Series Accession: GSE121351 ID: 200121351 2554. The Human Testis Cell Atlas via Single-cell RNA-seq (KIT+ spermatogonia ATAC-seq data set) (Submitter supplied) Human adult spermatogenesis involves a balance of spermatogonial stem cell self renewal and differentiation, alongside complex germline-niche interactions. To better understand, we performed single cell RNA sequencing of ~7000 testis cells from three healthy men of peak reproductive age. Our analyses revealed multiple distinctive transcriptional ‘states’ of self-renewing and differentiating spermatogonia, the cellular stages of gametogenesis, five niche cells (Leydig, Myoid, Sertoli, Endothelial, macrophage) and insights into germline-niche communication. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493238 Series Accession: GSE120507 ID: 200120507 2555. ATAC-Seq of chicken embryonic metatarsal skin treated with RCAS-CTNNB1, RCAS-GFP, and retinoic acid (Submitter supplied) The molecular mechanism controlling regional specific skin appendage phenotypes is a fundamental question that remains unresolved. We recently identified feather and scale primordium associated genes and with functional studies, proposed five major more modules are involved in scale-to-feather conversion and their integration is essential to form today’s feathers. Yet, how the molecular networks are wired and integrated at the genomic level is still unknown. more... Organism: Gallus gallus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19787 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA435935 Series Accession: GSE111098 ID: 200111098 2556. Chromatin accessibility landscape of articular knee cartilage reveals aberrant enhancer regulation in osteoarthritis (Submitter supplied) We employed Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-seq) to map the accessible chromatin landscape in articular knee cartilage of OA patients. We identified 109,215 accessible chromatin regions for cartilages, of which 71% were annotated as enhancers. By overlaying them with genetic and DNA methylation data, we have determined potential OA-relevant enhancers and their putative target genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 16 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA423060 Series Accession: GSE108301 ID: 200108301 2557. Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Rattus norvegicus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 4 related Platforms 114 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101918/ Series Accession: GSE101918 ID: 200101918 2558. Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia [RAT RNA-Seq] (Submitter supplied) Determination of the molecular properties of genetically targeted cell types has led to fundamental insights into mouse brain function and dysfunction. Here, we report an efficient strategy for precise exploration of gene expression events in specific cell types in a broad range of species. We demonstrate that classically defined, homologous neuronal and glial cell types differ between rodent and human by the expression of hundreds of orthologous, cell specific genes. more... Organism: Rattus norvegicus Type: Expression profiling by high throughput sequencing Platform: GPL20084 16 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395918 Series Accession: GSE101917 ID: 200101917 2559. Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia [Rat ATAC-Seq] (Submitter supplied) Determination of the molecular properties of genetically targeted cell types has led to fundamental insights into mouse brain function and dysfunction. Here, we report an efficient strategy for precise exploration of gene expression events in specific cell types in a broad range of species. We demonstrate that classically defined, homologous neuronal and glial cell types differ between rodent and human by the expression of hundreds of orthologous, cell specific genes. more... Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20084 1 Sample FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395919 Series Accession: GSE101916 ID: 200101916 2560. Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia [Mouse RNA-Seq] (Submitter supplied) Determination of the molecular properties of genetically targeted cell types has led to fundamental insights into mouse brain function and dysfunction. Here, we report an efficient strategy for precise exploration of gene expression events in specific cell types in a broad range of species. We demonstrate that classically defined, homologous neuronal and glial cell types differ between rodent and human by the expression of hundreds of orthologous, cell specific genes. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL19057 GPL17021 35 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395915 Series Accession: GSE101915 ID: 200101915 2561. Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia [Mouse ATAC-Seq] (Submitter supplied) Determination of the molecular properties of genetically targeted cell types has led to fundamental insights into mouse brain function and dysfunction. Here, we report an efficient strategy for precise exploration of gene expression events in specific cell types in a broad range of species. We demonstrate that classically defined, homologous neuronal and glial cell types differ between rodent and human by the expression of hundreds of orthologous, cell specific genes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395920 Series Accession: GSE101914 ID: 200101914 2562. Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia [Human RNA-Seq] (Submitter supplied) Determination of the molecular properties of genetically targeted cell types has led to fundamental insights into mouse brain function and dysfunction. Here, we report an efficient strategy for precise exploration of gene expression events in specific cell types in a broad range of species. We demonstrate that classically defined, homologous neuronal and glial cell types differ between rodent and human by the expression of hundreds of orthologous, cell specific genes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 54 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395921 Series Accession: GSE101913 ID: 200101913 2563. Species and Cell-Type Properties of Classically Defined Human and Rodent Neurons and Glia [Human ATAC-Seq] (Submitter supplied) Determination of the molecular properties of genetically targeted cell types has led to fundamental insights into mouse brain function and dysfunction. Here, we report an efficient strategy for precise exploration of gene expression events in specific cell types in a broad range of species. We demonstrate that classically defined, homologous neuronal and glial cell types differ between rodent and human by the expression of hundreds of orthologous, cell specific genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395916 Series Accession: GSE101912 ID: 200101912 2564. Genome-wide mapping and functional analysis of DNA methylation in clonal invasive crayfish [ATAC-seq] (Submitter supplied) The marbled crayfish (Procambarus virginalis) is a unique freshwater crayfish characterized by genetic uniformity, phenotypic variability, and substantial invasive potential. As invasion into different habitats occurs in the absence of genetic variation, epigenetic mechanisms have been suggested to mediate phenotypic adaptation. However, epigenetic regulation has not been analyzed in this organism yet. more... Organism: Procambarus virginalis Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24772 3 Samples FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493085 Series Accession: GSE120450 ID: 200120450 2565. Time-course chromatin accessibility and transcriptome in regeneration (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19132 GPL13304 GPL17275 32 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102841/ Series Accession: GSE102841 ID: 200102841 2566. Time-course chromatin accessibility in regeneration [ATAC-seq] (Submitter supplied) The ability to regenerate or recover from injuries varies greatly not only between species but also between tissues and organs or developmental stages of the same species. The mechanisms behind these different regenerative capabilities are ultimately dependent on the control of genome activity, determined by a complex interplay of regulatory elements functioning at the level of chromatin. Resetting of gene expression patterns during injury responses is, thus, shaped by the coordinated action of genomic regions (enhancers, silencers) that integrate the activity of multiple sequence-specific DNA binding proteins (transcription factors and cofactors). more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17275 14 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA399613 Series Accession: GSE102839 ID: 200102839 2567. PARCB Project: Reprogramming normal human epithelial tissues to a common, lethal neuroendocrine cancer lineage (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platforms: GPL11154 GPL21290 74 Samples FTP download: GEO (BIGWIG, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118207/ Series Accession: GSE118207 ID: 200118207 2568. Reprogramming normal human epithelial tissues to a common, lethal neuroendocrine cancer lineage (ATAC-seq) (Submitter supplied) Small cell carcinomas from different tissues exhibit transcriptional and epigenetic convergence and suggest common vulnerabilities for therapies Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 32 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484868 Series Accession: GSE118204 ID: 200118204 2569. ATAC-seq and RNA-seq from mouse mandible during distraction osteogenesis (Submitter supplied) During development and tissue regeneration, changes in chromatin structure driven by master transcription factors lead to stimulus-responsive transcriptional programs. A thorough understanding of how stem cells in the skeleton interpret mechanical stimuli and enact regeneration will also shed light on how mechanical forces are transduced in other embryonic and regenerative processes. Here we employ a rigorous mandibular distraction model in mice that is genetically dissectable, allowing for detailed examination of the fundamental principles regulating de novo bone formation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 51 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA412798 Series Accession: GSE104473 ID: 200104473 2570. Regulation of neuroregeneration by long noncoding RNAs [ATAC-seq] (Submitter supplied) In mammals, neurons in the peripheral nervous system (PNS) have regenerative capacity following injury, a capacity which but it is generally absent in the central nervous system (CNS). This difference is attributed, at least in part, to the intrinsic ability of PNS neurons to activate a unique regenerative transcriptional program following injury. Long noncoding RNA (lncRNA) transcripts are typically expressed in a small subset of cell types and may facilitate specificity in regulatory programs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489386 Series Accession: GSE119489 ID: 200119489 2571. IKZF2 is required for myeloid leukemic stem cells by driving self-renewal and inhibiting the myeloid differentiation program (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL21103 GPL19057 GPL13112 18 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120630/ Series Accession: GSE120630 ID: 200120630 2572. IKZF2 is required for myeloid leukemic stem cells by driving self-renewal and inhibiting the myeloid differentiation program II (Submitter supplied) We report that IKZF2 is required for maintaining chromatin accessibility in leukemic stem cells in myeloid leukemia. RNA seq and ATAC-seq were performed to investigate the changes in chromatin accessibility of differentially expressed genes in leukemic stem cells when IKZF2 was absent. We found that IKZF2 maintains open accessibility in self-renewal transcription factor motifs such as HOXA9 sites whereas motifs of differentiation transcription factors including C/EBPs are kept closed. Organism: Mus musculus Type: Other Platforms: GPL21103 GPL19057 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493794 Series Accession: GSE120623 ID: 200120623 2573. Activin/Smad2 and Wnt/β-catenin upregulate HAS2 and ALDH3A2 to facilitate mesendoderm differentiation of human ESCs (Submitter supplied) Activin and Wnt signaling are necessary and sufficient for mesendoderm (ME) differentiation of human embryonic stem cells (hESCs). In this study, we report that during the Activin and Wnt induced ME differentiation, Activin/Smad2 induces decrease of the repressive histone modification H3K27me3 by promoting proteasome-dependent degradation of EZH2. As a result, recruitment of the forkhead protein FOXH1 on open chromatin regions integrates the signals of Activin/Smad2 and Wnt/β-catenin to activate the expression of the ME genes including HAS2 and ALDH3A2. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA449858 Series Accession: GSE113047 ID: 200113047 2574. Genome-wide chromatin profiling using ATAC-seq of diabetic or non-diabetic murine haematopoietic stem cells (HSC) (Submitter supplied) To understand the underlying mechanisms and predict transcription factors implicated in the generation and sustained pro-inflammatory memory within HSCs, ATAC-seq was performed on bone marrow HSCs isolated from either diabetic or non-diabetic control mice. Differential peak analyses indicated that cells form diabetic mice had an altered chromatin structure, and pathway analysis of these differential sites revealed pathways associated with inflammation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 16 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA493253 Series Accession: GSE120518 ID: 200120518 2575. Cytokinin modulates chromatin accessibility in a context-dependent manner through the type-B response regulators (Submitter supplied) The plant hormone cytokinin regulates diverse aspects of plant growth and development, likely through context-dependent transcriptional regulation that relies on a dynamic interplay between regulatory proteins and chromatin. We employed the Assay for Transposase Accessible Chromatin (ATAC-Seq) to profile changes in the chromatin landscape of Arabidopsis roots and shoots in response to cytokinin. Our results reveal differentially accessible chromatin regions indicative of dynamic regulation in response to cytokinin. more... Organism: Arabidopsis thaliana Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17639 GPL21785 28 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA415015 Series Accession: GSE116287 ID: 200116287 2576. ATAC-seq data from naïve Tregs, memory Tregs and CD161+ Tregs (Submitter supplied) We analyze open chromatin regions of three populations of human Tregs Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA489004 Series Accession: GSE119372 ID: 200119372 2577. Molecular diversification of regulatory T cells in non-lymphoid tissues (Submitter supplied) Foxp3+CD4+ regulatory T (Treg) cells accumulate in certain non-lymphoid tissues, where they control diverse aspects of organ homeostasis, partly via a direct impact on neighboring non-immune cells. Populations of tissue-Tregs, as they have been termed, have transcriptomes distinct from those of their counterparts in lymphoid organs and other non-lymphoid tissues. Exploiting recent advances in profiling the chromatin accessibility and gene expression of rare cell populations, we examined the diversification of Tregs in visceral-adipose tissue, skeletal muscle and the colon vis-à-vis lymphoid organs from the same individuals. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA448878 Series Accession: GSE112731 ID: 200112731 2578. ATAC-sequencing of innate lymphoid cells that were sorted from mouse skin (Submitter supplied) Purpose: Regulome analysis of skin innate lymphoid cells Methods: Innate lymphoid cells were sorted from epidermis, dermis and subcutis of adult B6 mice, respectively and subjected to transposition reaction and library preparation. Results: 20,869 accessible regulatory elements were detected Conclusions: This study reveals regulome landscape of skin innate lymphoid cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE120nnn/GSE120126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA491707 Series Accession: GSE120126 ID: 200120126 2579. Differential Expression of IL-2 Defines CD4 T cells fated for Follicular Helper and Non-follicular Helper Development (ATAC-Seq) (Submitter supplied) IL-2 production defines precursors fated to become T Follicular Helper cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479502 Series Accession: GSE116606 ID: 200116606 2580. Tet2 orchestrates dynamics of hydroxy-methylation and chromatin state during cell reprogramming [ATAC-seq] (Submitter supplied) Studies of DNA hydroxy-methylation and chromatin state dynamics during highly-efficient somatic cell reprogramming Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA483740 Series Accession: GSE117920 ID: 200117920 2581. Seh1 Interacts with Olig2 and Brd7 to Promote Oligodendrocyte Differentiation and Myelination (ATAC_Seq) (Submitter supplied) Nuclear pore complex components (Nups) are involved in neural development and alterations in Nup genes are linked to human neurological diseases. However, the physiological functions of specific Nups and the underlying mechanisms involved in these processes remain elusive. Here we show that tissue-specific depletion of nucleoporin Seh1 causes dramatic myelination defects in the Central Nervous System (CNS). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 3 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490366 Series Accession: GSE119815 ID: 200119815 2582. Seh1 Interacts with Olig2 and Brd7 to Promote Oligodendrocyte Differentiation and Myelination (ChIP-Seq) (Submitter supplied) Nuclear pore complex components (Nups) are involved in neural development and alterations in Nup genes are linked to human neurological diseases. However, the physiological functions of specific Nups and the underlying mechanisms involved in these processes remain elusive. Here we show that tissue-specific depletion of nucleoporin Seh1 causes dramatic myelination defects in the Central Nervous System (CNS). more... Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24688 3 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE119nnn/GSE119814/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA490364 Series Accession: GSE119814 ID: 200119814 2583. Total RNA-seq in a primary T-ALL patient cohort (Submitter supplied) T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive type of blood cancer resulting from malignant transformation of T-cell precursors. Several oncogenes, including the ‘T-cell leukemia homeobox 1’ TLX1 (HOX11) transcription factor, have been identified as early driver events that cooperate with other genetic aberrations in leukemic transformation of progenitor T-cells. The TLX1 controlled transcriptome in T-ALL has been investigated extensively in the past in terms of protein-coding genes, but remains unexplored thus far at the level of long non-coding RNAs (lncRNAs), the latter renown as well-established versatile and key players implicated in various cancer hallmarks. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 25 Samples FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434176 Series Accession: GSE110636 ID: 200110636 2584. Total RNA-seq in ALL-SIL upon TLX1 knockdown (Submitter supplied) T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive type of blood cancer resulting from malignant transformation of T-cell precursors. Several oncogenes, including the ‘T-cell leukemia homeobox 1’ TLX1 (HOX11) transcription factor, have been identified as early driver events that cooperate with other genetic aberrations in leukemic transformation of progenitor T-cells. The TLX1 controlled transcriptome in T-ALL has been investigated extensively in the past in terms of protein-coding genes, but remains unexplored thus far at the level of long non-coding RNAs (lncRNAs), the latter renown as well-established versatile and key players implicated in various cancer hallmarks. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 9 Samples FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434175 Series Accession: GSE110635 ID: 200110635 2585. Total RNA-seq in ALL-SIL upon JQ1 inhibition (Submitter supplied) T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive type of blood cancer resulting from malignant transformation of T-cell precursors. Several oncogenes, including the ‘T-cell leukemia homeobox 1’ TLX1 (HOX11) transcription factor, have been identified as early driver events that cooperate with other genetic aberrations in leukemic transformation of progenitor T-cells. The TLX1 controlled transcriptome in T-ALL has been investigated extensively in the past in terms of protein-coding genes, but remains unexplored thus far at the level of long non-coding RNAs (lncRNAs), the latter renown as well-established versatile and key players implicated in various cancer hallmarks. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434173 Series Accession: GSE110634 ID: 200110634 2586. PolyA+ RNA-seq in a primary T-ALL patient cohort (Submitter supplied) T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive type of blood cancer resulting from malignant transformation of T-cell precursors. Several oncogenes, including the ‘T-cell leukemia homeobox 1’ TLX1 (HOX11) transcription factor, have been identified as early driver events that cooperate with other genetic aberrations in leukemic transformation of progenitor T-cells. The TLX1 controlled transcriptome in T-ALL has been investigated extensively in the past in terms of protein-coding genes, but remains unexplored thus far at the level of long non-coding RNAs (lncRNAs), the latter renown as well-established versatile and key players implicated in various cancer hallmarks. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 60 Samples FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434174 Series Accession: GSE110633 ID: 200110633 2587. PolyA+ RNA-seq in ALL-SIL upon TLX1 knockdown (Submitter supplied) T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive type of blood cancer resulting from malignant transformation of T-cell precursors. Several oncogenes, including the ‘T-cell leukemia homeobox 1’ TLX1 (HOX11) transcription factor, have been identified as early driver events that cooperate with other genetic aberrations in leukemic transformation of progenitor T-cells. The TLX1 controlled transcriptome in T-ALL has been investigated extensively in the past in terms of protein-coding genes, but remains unexplored thus far at the level of long non-coding RNAs (lncRNAs), the latter renown as well-established versatile and key players implicated in various cancer hallmarks. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 9 Samples FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434171 Series Accession: GSE110632 ID: 200110632 2588. H3K4me1 ChIP-seq in ALL-SIL (Submitter supplied) T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive type of blood cancer resulting from malignant transformation of T-cell precursors. Several oncogenes, including the ‘T-cell leukemia homeobox 1’ TLX1 (HOX11) transcription factor, have been identified as early driver events that cooperate with other genetic aberrations in leukemic transformation of progenitor T-cells. The TLX1 controlled transcriptome in T-ALL has been investigated extensively in the past in terms of protein-coding genes, but remains unexplored thus far at the level of long non-coding RNAs (lncRNAs), the latter renown as well-established versatile and key players implicated in various cancer hallmarks. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 3 Samples FTP download: GEO (BED, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434172 Series Accession: GSE110631 ID: 200110631 2589. ATAC-seq of ALL-SIL cells (Submitter supplied) T-cell acute lymphoblastic leukemia (T-ALL) is an aggressive type of blood cancer resulting from malignant transformation of T-cell precursors. Several oncogenes, including the ‘T-cell leukemia homeobox 1’ TLX1 (HOX11) transcription factor, have been identified as early driver events that cooperate with other genetic aberrations in leukemic transformation of progenitor T-cells. The TLX1 controlled transcriptome in T-ALL has been investigated extensively in the past in terms of protein-coding genes, but remains unexplored thus far at the level of long non-coding RNAs (lncRNAs), the latter renown as well-established versatile and key players implicated in various cancer hallmarks. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO (BED, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434170 Series Accession: GSE110630 ID: 200110630 2590. LSD1 regulates plasmablast chromatin accessibility and transcriptome (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114777/ Series Accession: GSE114777 ID: 200114777 2591. LSD1 regulates plasmablast chromatin accessibility (Submitter supplied) To understand the role of LSD1 in B cell differentiation, mice with B cell conditional deletion of LSD1 were intravenously inoculated with LPS. After 3 days, B220+GL7-CD138- naïve B cells and CD138+ plasmablasts were FACS-sorted from the spleens and RNA-seq was performed to identify LSD1-target regulated chromatin. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA472601 Series Accession: GSE114774 ID: 200114774 2592. Transcriptional and Epigenomic Landscapes of CNS and non-CNS Vascular Endothelial Cells (Submitter supplied) Vascular endothelial cell (EC) function depends on appropriate organ-specific molecular and cellular specializations. To explore genomic mechanisms that control this specialization, we have analyzed and compared the transcriptome, accessible chromatin, and DNA methylome landscapes from mouse brain, liver, lung, and kidney ECs. Analysis of transcription factor (TF) motifs at candidate cis-regulatory elements together with TF gene expression reveals both shared and organ-specific EC TFs. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 GPL19057 42 Samples FTP download: GEO (BW, MTX, NARROWPEAK, TAR, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA438341 Series Accession: GSE111839 ID: 200111839 2593. ATAC-seq data (Submitter supplied) The immune system depends on a balanced interplay among a variety of specialized cell types transitioning between resting and stimulated states. While epigenome mapping efforts have focused on resting ex vivo immune cells, efforts to characterize stimulation-induced chromatin changes of diverse cell types has been limited. Thus, we collected ATAC-seq and RNA-seq data from immune cell types under resting and stimulated conditions from blood of healthy individuals, and cell types from fetal thymus samples. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL24676 175 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484801 Series Accession: GSE118189 ID: 200118189 2594. RNA-seq data (Submitter supplied) The immune system depends on a balanced interplay among a variety of specialized cell types transitioning between resting and stimulated states. While epigenome mapping efforts have focused on resting ex vivo immune cells, efforts to characterize stimulation-induced chromatin changes of diverse cell types has been limited. Thus, we collected ATAC-seq and RNA-seq data from immune cell types under resting and stimulated conditions from blood of healthy individuals, and cell types from fetal thymus samples. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platforms: GPL20301 GPL24676 166 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA484735 Series Accession: GSE118165 ID: 200118165 2595. Chromatin protein profiling during the mammalian cell cycle reveals the extent of mitotic preservation of the regulatory landscape (Submitter supplied) We report a novel method to quantify bulk changes of chromatin associated proteins in different cellular states and apply it to the mammalian cell cycle Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL18573 GPL16791 13 Samples FTP download: GEO (TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417010 Series Accession: GSE106482 ID: 200106482 2596. Single Cell and Open Chromatin Analysis Reveals Molecular Origin of Epidermal Cells of the Skin (Submitter supplied) Skin and its appendages such as hair follicle and sweat gland are formed by Keratin-5 expressing (Krt5+) epidermal cells that are specified from primitive, Keratin-8 expressing (Krt8+) ectodermal progenitors shortly after gastrulation. Here we show that transcription factor ∆Np63 is required for converting Krt8+ ectodermal progenitors to Krt5+ epidermal progenitors and priming the underlying dermal cells to form dermal condensate by activating the Wnt/ß-Catenin pathway. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL17021 20 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380971 Series Accession: GSE97213 ID: 200097213 2597. Polycomb complexes associate with enhancers to promote oncogenic transcriptional programs in cancer (Submitter supplied) The Polycomb repressive complexes PRC1 and PRC2 play an essential role in cell fate decisions, embryonic development and gene regulation. While the functions of PRC2 in cancer are under intense study, the function of PRC1 in cancer remains largely unexplored. Here, we show that RNF2, the gene encoding RING1B, and canonical PRC1 (cPRC1) genes are amplified and overexpressed in breast cancer. Specifically, in estrogen receptor positive (ER+) breast cancer cells, cPRC1 is functionally associated with enhancers and genes regulated by ERa, while in triple negative breast cancer (TNBC) cells, a different cPRC1 variant is recruited to enhancers and promoters occupied by the bromodomain protein BRD4. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 57 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419210 Series Accession: GSE107176 ID: 200107176 2598. Joint profiling of chromatin accessibility and gene expression in thousands of single cells (Submitter supplied) Here we describe sci-CAR, a combinatorial indexing strategy to jointly profile chromatin accessibility and mRNA in each of thousands of single cells. As a proof-of-concept, we apply sci-CAR to 4,825 cells comprising a time-series of dexamethasone treatment, as well as to 11,233 cells from the mouse kidney. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL19415 6 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481032 Series Accession: GSE117089 ID: 200117089 2599. Oligodendrocyte precursor differentiation and survival requires chromatin remodeling by Chd7 and Chd8 (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 30 Samples FTP download: GEO (BIGWIG, BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116601/ Series Accession: GSE116601 ID: 200116601 2600. Oligodendrocyte precursor differentiation and survival requires chromatin remodeling by Chd7 and Chd8 [ATAC-seq] (Submitter supplied) Oligodendrocyte precursor cells (OPCs) constitute the main proliferative cells in the adult brain, and deregulation of OPC proliferation-differentiation balance results in either glioma formation or defective adaptive (re)myelination. OPC differentiation requires significant genetic reprogramming implicating chromatin remodeling. Here, we report on uncharacterized functions of the chromatin remodelers Chd7 and Chd8 in OPCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 10 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA479474 Series Accession: GSE116598 ID: 200116598 2601. Genome-wide regulatory architecture maps using ATAC-seq, H3K4me2 ChIP-seq, and PEAT in Drosophila S2 cells and ATAC-seq in whole worms (Submitter supplied) To assess the organization of regulatory architecture across organisms, we performed ATAC-seq to identify accessible regions of chromatin, H3K4me2 ChIP-seq to measure regulatory status, and PEAT to measure Transcription start sites of stable transcripts in Drosophila S2 cells. For comparison, ATAC-seq for accessible chromatin measurement was performed in whole stage L3 worms. Organism: Caenorhabditis elegans; Drosophila melanogaster Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19757 GPL19132 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA400453 Series Accession: GSE103177 ID: 200103177 2602. Genome-wide DNA accessibility maps and differential gene expression using ChIP-seq, ATAC-seq and RNA-seq for the human secondary fibroblast cell line hiF-T and whole worms with and without knockdown of FACT complex (Submitter supplied) To assess the mechanisms by which FACT depletion leads to increased sensitivity of cells to be reprogrammed, we measured the chromatin accessibility landscape using ATAC-seq following mock treatment, SSRP1 knockdown, or SUPT16H knockdown in human fibroblasts and mock, hmg-3 or hmg-4 knockdown in whole worms, and differential gene expression in hmg-3 knockout mutants or following mock, hmg-4, or spt-16 knockdown by RNAseq. Organism: Caenorhabditis elegans; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 5 related Platforms 58 Samples FTP download: GEO (BIGWIG, BW, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA386158 Series Accession: GSE98758 ID: 200098758 2603. Comprehensively profiling the chromatin architecture of tissue restricted antigen expression in thymic epithelial cells (Submitter supplied) Thymic epithelial cells (TEC) effect crucial roles in thymopoiesis including the control of negative thymocyte selection. This process depends on their capacity to express promiscuously genes encoding tissue-restricted antigens. This competence is accomplished in medullary TEC (mTEC) in part by the presence of the transcriptional facilitator AutoImmune REgulator, AIRE. AIRE-regulated gene transcription is marked by repressive chromatin modifications, including H3K27me3. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 340 Samples FTP download: GEO (BB, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA472356 Series Accession: GSE114713 ID: 200114713 2604. ES cells and iPS cells under exposure to sublethal of isotretinoin (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 48 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85881/ Series Accession: GSE85881 ID: 200085881 2605. Genome-wide chromatin accessibility profiling of cardiomyocyte differentiation from human ES cells and iPS cells under exposure to sublethal of isotretinoin (ATAC-seq) (Submitter supplied) In this study, isotretinoin (INN)-induced alternations in genome-wide open-chromatin regions during cardiomyocyte differentiation were investigated. H1-hESC and C15-hiPSC were differentiated to caidiomyocytes under exposure to sublethal level of INN, and cells were collected at day 0 (undifferentiated cellsl) day 2 (mesoderm) and day 6 (cardiac progenitors) for genome-wide open-chromatin profiling by ATAC-seq. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 24 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA339625 Series Accession: GSE85879 ID: 200085879 2606. Chromatin accessibility analysis of adipose progenitors (AP). (Submitter supplied) We hypothesized that core transcriptional regulatory circuitries analysis could be used in conjunction with gene expression profiling data to nominate specific TFs for additional functional studies of AP cell state. To accomplish this analysis, we utilized the assay of transposase-accessible chromatin coupled to massively parallel sequencing (ATAC-seq) to identify putative enhancers in APs. The AP preparation involved adipose tissue digestion, and negative selection of the stromal vascular fraction (depletion of CD31+ endothelial cells and Lineage positive cells). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA487081 Series Accession: GSE118856 ID: 200118856 2607. Chromatin accessibility maps of human primary pancreatic cell types (Submitter supplied) To obtain comprehensive maps of human pancreatic chromatin states, we performed genome-wide open chromatin and histone modification assays from primary human pancreatic cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 46 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA317376 Series Accession: GSE79468 ID: 200079468 2608. SIRT6 haploinsufficiency induces BRAFV600E melanoma cell resistance to MAPK inhibitors via IGF signaling (Submitter supplied) Through integrated transcriptomic, epigenomic and proteomic analyses, we identified IGFBP2, an insulin growth factor (IGF) binding protein, as a direct SIRT6 target gene. We further show that SIRT6 haploinsufficiency, but not complete knock out of SIRT6 promotes IGFBP2 expression via increased H3K56 acetylation at the IGFBP2 locus allowing melanoma cell survival in the presence of MAPK signaling inhibitors (MAPKi).  Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL18573 40 Samples FTP download: GEO (BW, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA399101 Series Accession: GSE102813 ID: 200102813 2609. ATAC-seq with and without SET8 in U2OS cells (Submitter supplied) We report that loss of SET8 from cells leads to a global decrease in chromatin compaction status in G1 phase. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA486188 Series Accession: GSE118606 ID: 200118606 2610. The Miniature-chemostat Aging Device: A new experimental platform facilitates assessment of the transcriptional and chromatin landscapes of replicatively aging yeast (Submitter supplied) WT and mutant strains (fob1delta,sir2delta,ubr2delta) of Saccharomyces cerevisiae were grown and replicatively aged in mini-stat aging devices for transcriptional (RNA-seq) and chromatin accessibility (ATAC-seq) profiling. Organism: Saccharomyces cerevisiae Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21656 117 Samples FTP download: GEO (BIGWIG, CSV, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA486147 Series Accession: GSE118581 ID: 200118581 2611. Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [4C-seq] (Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more... Organism: Danio rerio Type: Other Platform: GPL14875 83 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA476572 Series Accession: GSE115945 ID: 200115945 2612. Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Branchiostoma lanceolatum; Danio rerio; Oryzias latipes Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 7 related Platforms 217 Samples FTP download: GEO (BED, BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106431/ Series Accession: GSE106431 ID: 200106431 2613. Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [RNA-Seq] (Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more... Organism: Branchiostoma lanceolatum; Danio rerio; Oryzias latipes Type: Expression profiling by high throughput sequencing 4 related Platforms 81 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416866 Series Accession: GSE106430 ID: 200106430 2614. Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [CAGE] (Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more... Organism: Branchiostoma lanceolatum Type: Expression profiling by high throughput sequencing Platform: GPL24206 7 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106429/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416976 Series Accession: GSE106429 ID: 200106429 2615. Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ATAC-Seq] (Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more... Organism: Danio rerio; Branchiostoma lanceolatum; Oryzias latipes Type: Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 29 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416977 Series Accession: GSE106428 ID: 200106428 2616. Functional genomic and transcriptomic analysis of amphioxus and the origin of vertebrate genomic traits [ChIP-Seq] (Submitter supplied) What genomic changes led to the origin of vertebrates remains a mystery. On the one hand, animal evolution is thought to be driven mostly by changes in the cis-regulatory regions of a shared conserved and toolkit of developmental genes. On the other hand, vertebrates experienced two rounds of whole genome duplication (WGD) that increased their gene repertoire, particularly of regulatory genes controlling embryo development. more... Organism: Branchiostoma lanceolatum Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24206 17 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416856 Series Accession: GSE106372 ID: 200106372 2617. Base resolution methylome profiling of Branchiostoma lanceolatum embryos and adult tissues (Submitter supplied) To be able to fully comprehend the contribution of the epigenome to embryonic development, it is important to understand how various components of the epigenome evolved. To date, a number of studies have thoroughly described various epigenetic mechanisms in both vertebrates and invertebrates, however there is currently a lack of high resolution epigenomic data corresponding to animals that form the invertebrate-vertebrate boundary. more... Organism: Branchiostoma lanceolatum Type: Methylation profiling by high throughput sequencing Platforms: GPL23852 GPL25186 10 Samples FTP download: GEO (TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA396824 Series Accession: GSE102144 ID: 200102144 2618. Differential open chromatin profile and transcriptomic signature define depot-specific human subcutaneous preadipocytes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118500/ Series Accession: GSE118500 ID: 200118500 2619. Differential open chromatin profile and transcriptomic signature define depot-specific human subcutaneous preadipocytes [ATAC-Seq] (Submitter supplied) RNA-seq experiments revealed an A-fat and GF-fat selective gene expression signature, with 126 genes up-regulated in abdominal preadipocytes and 90 genes up-regulated in GF cells. Assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) identified almost 10-times more A-specific chromatin-accessible regions. Using a combined analysis of ATAC-seq and global gene expression data, we identified 74 of the 126 abdominal-specific genes (59%) with A-specific accessible chromatin sites within 200kb of the transcription start site (TSS). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA485819 Series Accession: GSE118499 ID: 200118499 2620. Differential open chromatin profile and transcriptomic signature define depot-specific human subcutaneous preadipocytes [RNA-seq] (Submitter supplied) RNA-seq experiments revealed an A-fat and GF-fat selective gene expression signature, with 126 genes up-regulated in abdominal preadipocytes and 90 genes up-regulated in GF cells. Assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) identified almost 10-times more A-specific chromatin-accessible regions. Using a combined analysis of ATAC-seq and global gene expression data, we identified 74 of the 126 abdominal-specific genes (59%) with A-specific accessible chromatin sites within 200kb of the transcription start site (TSS). more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE118nnn/GSE118497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA485805 Series Accession: GSE118497 ID: 200118497 2621. Combinatorial Smad2/3 Activities Downstream of Nodal Signaling Maintain Embryonic/Extra-Embryonic Cell Identities during Lineage Priming (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL6887 GPL21103 58 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110164/ Series Accession: GSE110164 ID: 200110164 2622. Combinatorial Smad2/3 Activities Downstream of Nodal Signaling Maintain Embryonic/Extra-Embryonic Cell Identities during Lineage Priming [ATAC-Seq] (Submitter supplied) Epiblast cells in the early post-implantation stage mammalian embryo undergo a transition described as lineage priming before cell fate allocation, but signaling pathways acting upstream remain ill defined. Genetic studies demonstrate that Smad2/3 double-mutant mouse embryos die shortly after implantation. To learn more about the molecular disturbances underlying this abrupt failure, here we characterised Smad2/3-deificient embryonic stem cells (ESCs). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 7 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432988 Series Accession: GSE110162 ID: 200110162 2623. ARID2 promotes clear cell renal cell carcinoma in the absence of functional PBRM1 [RNA-seq] (Submitter supplied) Subunits of SWI/SNF chromatin remodeling complexes are frequently mutated in human malignancies. The PBAF complex is composed of multiple subunits, including the putative tumor suppressor proteins PBRM1 (BAF180) and ARID2 (BAF200) that are unique to this SWI/SNF complex. PBRM1 is mutated in various cancers, with a high mutation frequency in clear cell renal cell carcinoma (ccRCC). Here, we integrate RNA-seq, ARID2 and histone mark ChIP-seq, and ATAC-seq data to show that PBAF acts to enhance or repress gene expression depending on the genomic context. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA400186 Series Accession: GSE102806 ID: 200102806 2624. ARID2 promotes clear cell renal cell carcinoma in the absence of functional PBRM1 [ATAC-seq] (Submitter supplied) Subunits of SWI/SNF chromatin remodeling complexes are frequently mutated in human malignancies. The PBAF complex is composed of multiple subunits, including the putative tumor suppressor proteins PBRM1 (BAF180) and ARID2 (BAF200) that are unique to this SWI/SNF complex. PBRM1 is mutated in various cancers, with a high mutation frequency in clear cell renal cell carcinoma (ccRCC). Here, we integrate RNA-seq, ARID2 and histone mark ChIP-seq, and ATAC-seq data to show that PBAF acts to enhance or repress gene expression depending on the genomic context. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 3 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA399228 Series Accession: GSE102805 ID: 200102805 2625. ARID2 promotes clear cell renal cell carcinoma in the absence of functional PBRM1 [Histone modification native ChIP-seq] (Submitter supplied) Subunits of SWI/SNF chromatin remodeling complexes are frequently mutated in human malignancies. The PBAF complex is composed of multiple subunits, including the putative tumor suppressor proteins PBRM1 (BAF180) and ARID2 (BAF200) that are unique to this SWI/SNF complex. PBRM1 is mutated in various cancers, with a high mutation frequency in clear cell renal cell carcinoma (ccRCC). Here, we integrate RNA-seq, ARID2 and histone mark ChIP-seq, and ATAC-seq data to show that PBAF acts to enhance or repress gene expression depending on the genomic context. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 15 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA401535 Series Accession: GSE102804 ID: 200102804 2626. ARID2 promotes clear cell renal cell carcinoma in the absence of functional PBRM1 [ARID2 ChIP-seq] (Submitter supplied) Subunits of SWI/SNF chromatin remodeling complexes are frequently mutated in human malignancies. The PBAF complex is composed of multiple subunits, including the putative tumor suppressor proteins PBRM1 (BAF180) and ARID2 (BAF200) that are unique to this SWI/SNF complex. PBRM1 is mutated in various cancers, with a high mutation frequency in clear cell renal cell carcinoma (ccRCC). Here, we integrate RNA-seq, ARID2 and histone mark ChIP-seq, and ATAC-seq data to show that PBAF acts to enhance or repress gene expression depending on the genomic context. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BW, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA401536 Series Accession: GSE102803 ID: 200102803 2627. ARID2 promotes clear cell renal cell carcinoma in the absence of functional PBRM1 [microarray] (Submitter supplied) Subunits of SWI/SNF chromatin remodeling complexes are frequently mutated in human malignancies. The PBAF complex is composed of multiple subunits, including the putative tumor suppressor proteins PBRM1 (BAF180) and ARID2 (BAF200) that are unique to this SWI/SNF complex. PBRM1 is mutated in various cancers, with a high mutation frequency in clear cell renal cell carcinoma (ccRCC). Here, we integrate RNA-seq, ARID2 and histone mark ChIP-seq, and ATAC-seq data to show that PBAF acts to enhance or repress gene expression depending on the genomic context. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL16570 6 Samples FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102656/ Series Accession: GSE102656 ID: 200102656 2628. BRWD1 orchestrates epigenetic landscape of late B lymphopoiesis (Submitter supplied) Transcription factor (TF) networks determine cell fate in hematopoiesis. However, how TFs cooperate with other regulatory mechanisms to instruct transcription remains poorly understood. We demonstrate in small pre-B cells, that the lineage restricted epigenetic reader BRWD1 closes early development enhancers and opens the enhancers of late B lymphopoiesis to TF binding. BRWD1 differentially regulated over 7000 genes including repressing proliferative and inducing differentiation programs. more... Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 59 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA400057 Series Accession: GSE103057 ID: 200103057 2629. Genetic regulatory mechanisms of smooth muscle cells map to coronary artery disease risk loci (Submitter supplied) Coronary artery disease (CAD) is the leading cause of death globally. Genome-wide association studies (GWAS) have identified more than 130 independent loci that influence CAD risk, most of which reside in non-coding regions of the genome. To interpret these loci, we generated transcriptome and whole-genome datasets using human coronary artery smooth muscle cells (HCASMC) from 52 unrelated donors, as well as ATAC-seq epigenomic datasets on a subset of 8 donors. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL18573 60 Samples FTP download: GEO (GCT, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451517 Series Accession: GSE113348 ID: 200113348 2630. TRPS1 shapes YAP/TEAD-dependent transcription in breast cancer cells [ATAC-seq] (Submitter supplied) We report the ATAC-Seq profiles of TRPS-depleted T47D cells. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA418846 Series Accession: GSE107017 ID: 200107017 2631. ATAC sequencing of HAP1 cells (Submitter supplied) We analysed the global effect of CHD3-KO and SENP1-KO HAP1 cell lines compared to control cell line, on chromatin accessibility using ATAC-seq. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA435717 Series Accession: GSE111047 ID: 200111047 2632. Transcription factor Etv6 controls functional differentiation of cross-presenting classical dendritic cells [ATAC-Seq] (Submitter supplied) An IRF8-dependent subset of classical dendritic cells (cDCs), termed DC1, effectively cross-primes CD8+ T cells and facilitates antitumor T cell responses. Etv6 is an ETS family transcription factor that controls hematopoietic stem and progenitor cell (HSPC) function. We report that like HSPC, cDCs express Etv6 but not its antagonist ETS1, whereas interferon-producing plasmacytoid dendritic cells (pDCs) express both factors. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416838 Series Accession: GSE106405 ID: 200106405 2633. Architectural proteins and pluripotency factors cooperate to orchestrate the transcriptional response of hESCs to temperature stress (Submitter supplied) Cells respond to temperature stress via up- and down-regulation of hundreds of genes. This process is regulated by the heat shock factor HSF1, which controls the release of RNAPII from promoter-proximal pausing. Here we analyze the events taking place upstream of transcription elongation in hESCs. We find that temperature stress results in the activation or decommissioning of thousands of enhancers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL11154 93 Samples FTP download: GEO (BED, BW, HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE105nnn/GSE105028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA414442 Series Accession: GSE105028 ID: 200105028 2634. Cicero Predicts cis-Regulatory DNA Interactions from Single-Cell Chromatin Accessibility Data (Submitter supplied) Linking regulatory DNA elements to their target genes, which may be located hundreds of kilobases away, remains challenging. Here, we introduce Cicero, an algorithm that identifies co-accessible pairs of DNA elements using single-cell chromatin accessibility data and so connects regulatory elements to their putative target genes. We apply Cicero to investigate how dynamically accessible elements orchestrate gene regulation in differentiating myoblasts. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL15520 32 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432102 Series Accession: GSE109828 ID: 200109828 2635. Transcriptional control of macrophage inducible gene expression by cohesin [ChIP-Seq II] (Submitter supplied) Although cohesin and CTCF are major determinants of interphase 3D genome organisation, their impact on the maintenance of transcriptional control, chromatin marks, and enhancer states appears surprisingly limited. Here we study how cohesin promotes the dynamics of eRNA transcription and enhancer states and facilitates the regulation of inducible inflammatory genes in macrophages. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 36 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA428621 Series Accession: GSE108805 ID: 200108805 2636. Transcriptional control of macrophage inducible gene expression by cohesin (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 120 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108599/ Series Accession: GSE108599 ID: 200108599 2637. Transcriptional control of macrophage inducible gene expression by cohesin [ATAC-Seq] (Submitter supplied) Although cohesin and CTCF are major determinants of interphase 3D genome organisation, their impact on the maintenance of transcriptional control, chromatin marks, and enhancer states appears surprisingly limited. Here we study how cohesin promotes the dynamics of eRNA transcription and enhancer states and facilitates the regulation of inducible inflammatory genes in macrophages. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427858 Series Accession: GSE108585 ID: 200108585 2638. Transcriptional control of macrophage inducible gene expression by cohesin [GRO-Seq] (Submitter supplied) Although cohesin and CTCF are major determinants of interphase 3D genome organisation, their impact on the maintenance of transcriptional control, chromatin marks, and enhancer states appears surprisingly limited. Here we study how cohesin promotes the dynamics of eRNA transcription and enhancer states and facilitates the regulation of inducible inflammatory genes in macrophages. Organism: Mus musculus Type: Other Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427859 Series Accession: GSE108584 ID: 200108584 2639. Transcriptional control of macrophage inducible gene expression by cohesin [ChIP-Seq I] (Submitter supplied) Although cohesin and CTCF are major determinants of interphase 3D genome organisation, their impact on the maintenance of transcriptional control, chromatin marks, and enhancer states appears surprisingly limited. Here we study how cohesin promotes the dynamics of eRNA transcription and enhancer states and facilitates the regulation of inducible inflammatory genes in macrophages. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427860 Series Accession: GSE108583 ID: 200108583 2640. Transcriptional control of macrophage inducible gene expression by cohesin [RNA-Seq II] (Submitter supplied) Although cohesin and CTCF are major determinants of interphase 3D genome organisation, their impact on the maintenance of transcriptional control, chromatin marks, and enhancer states appears surprisingly limited. Here we study how cohesin promotes the dynamics of eRNA transcription and enhancer states and facilitates the regulation of inducible inflammatory genes in macrophages. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 18 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427861 Series Accession: GSE108582 ID: 200108582 2641. Transcriptional control of macrophage inducible gene expression by cohesin [RNA-Seq I] (Submitter supplied) Although cohesin and CTCF are major determinants of interphase 3D genome organisation, their impact on the maintenance of transcriptional control, chromatin marks, and enhancer states appears surprisingly limited. Here we study how cohesin promotes the dynamics of eRNA transcription and enhancer states and facilitates the regulation of inducible inflammatory genes in macrophages. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 30 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427862 Series Accession: GSE108581 ID: 200108581 2642. Chromatin accessibility at Polycomb target genes is independent of PRC1 and PRC2 catalytic core complexes (MEF ATAC-seq) (Submitter supplied) Polycomb repressive complexes 1 and 2 (PRC1/2) act to limit transcriptional activity at gene promoters. One of the mechanisms by which they are proposed to achieve this is through the compaction of nucleosomal chromatin. However, this model is based largely upon in vitro studies and has yet to be explored sufficiently in living cells. We therefore characterised the chromatin accessibility of Polycomb-occupied gene promoters using assay for transposase accessible chromatin (ATAC-seq). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA483132 Series Accession: GSE117768 ID: 200117768 2643. Chromatin accessibility at Polycomb target genes is independent of PRC1 and PRC2 catalytic core complexes (ESC Mnase-seq) (Submitter supplied) Polycomb repressive complexes 1 and 2 (PRC1/2) act to limit transcriptional activity at gene promoters. One of the mechanisms by which they are proposed to achieve this is through the compaction of nucleosomal chromatin. However, this model is based largely upon in vitro studies and has yet to be explored sufficiently in living cells. We therefore characterised the chromatin accessibility of Polycomb-occupied gene promoters using assay for transposase accessible chromatin (ATAC-seq). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA483131 Series Accession: GSE117767 ID: 200117767 2644. Analysis of chromatin accessibility uncovers TEAD1 as a regulator of migration in human glioblastoma (Submitter supplied) The intrinsic drivers of migration in glioblastoma (GBM) are poorly understood. To better capture the native molecular imprint of GBM and its developmental context, we isolate human stem cell populations from GBM (GSC) and germinal matrix tissues and map their chromatin accessibility via ATAC-seq. We uncover two distinct regulatory GSC signatures, a developmentally-shared/proliferative and a tumor-specific/migratory one in which TEAD1/4 motifs are uniquely overrepresented. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 31 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA482999 Series Accession: GSE117685 ID: 200117685 2645. Novel Principles of Cellular Reprogramming Revealed by Prospective Isolation and Characterization of Rare Intermediates Poised to Generate iPSCs (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL17021 63 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106838/ Series Accession: GSE106838 ID: 200106838 2646. Novel Principles of Cellular Reprogramming Revealed by Prospective Isolation and Characterization of Rare Intermediates Poised to Generate iPSCs [ATAC-seq] (Submitter supplied) Cellular reprogramming converts differentiated cells into induced pluripotent stem cells (iPSCs). However, this process is extremely inefficient, complicating mechanistic studies. Here, we identified and molecularly characterized rare, early intermediates poised to reprogram with up to 100% efficiency, without perturbing additional genes or pathways. Analysis of these cells uncovered transcription factors (e.g., Tfap2c, Bex2), which are critical for reprogramming but dispensable for pluripotency maintenance. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA418163 Series Accession: GSE106834 ID: 200106834 2647. Krox20 hindbrain regulation in Zebrafish [ATAC-seq] (Submitter supplied) In the present study, we have identified six enhancers located within the zebrafish krox20 locus, using accessibility data generated by ATAC-seq and characterized their activity profiles as well as their functions and interactions in the zebrafish hindbrain . We also investigated the orthologues in six evolutionary distant vertebrates of one of these element, showing a great variety of activity profiles demonstrating the striking evolutionary flexibility of this element . Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451199 Series Accession: GSE113471 ID: 200113471 2648. MEF2C phosphorylation is required for chemotherapy resistance in acute myeloid leukemia [ATAC-seq] (Submitter supplied) In acute myeloid leukemia, chemotherapy resistance remains prevalent and poorly understood. Using functional proteomics of patient AML specimens, we identified MEF2C S222 phosphorylation as a specific marker of primary chemoresistance. We found that transgenic Mef2cS222A/S222A mice engineered to block MEF2C phosphorylation exhibited normal hematopoiesis, but were resistant to leukemogenesis induced by MLL-AF9. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107072/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA418959 Series Accession: GSE107072 ID: 200107072 2649. Large-scale single cell mapping of the thymic stroma identifies a new thymic epithelial cell lineage [ATAC-seq] (Submitter supplied) T cell development and selection is orchestrated in the thymus by a specialized niche of diverse stromal populations. By transcriptional single cell sorting, we de novo characterize the entire stromal compartment of the thymus. We identified dozens of cell states within the thymic stroma, with thymic epithelial cells (TEC) showing the highest degree of heterogeneity. Our analysis highlights four major medullary TEC (mTEC I-IV) populations, with distinct molecular functions, epigenetic landscapes and lineage regulators. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA407805 Series Accession: GSE103968 ID: 200103968 2650. Relative accessability of HSV1 genomic DNA compared with its host cell (ATAC-seq) (Submitter supplied) To compare the relative accessability of HSV1 DNA compared with its host DNA, we performed ATAC-seq analysis. Organism: Human alphaherpesvirus 1 strain KOS; Homo sapiens Type: Other Platform: GPL25348 15 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481773 Series Accession: GSE117335 ID: 200117335 2651. Inter-tumoral heterogeneity in SCLC is influenced by the cell-type of origin (Submitter supplied) We describe cell-of-origin as an important influence on suscebtability to changes in chromatin accessibility by Nfib Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 48 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE117nnn/GSE117177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA481350 Series Accession: GSE117177 ID: 200117177 2652. Fine-tuning Mybl2 levels are required for proper MET process during somatic reprogramming [ATAC-Seq] (Submitter supplied) Genome wide data investigating the role of Mybl2 in reprogramming Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA420796 Series Accession: GSE107577 ID: 200107577 2653. The mediator subunit Med23 serves as a gatekeeper of the myeloid-primed state of hematopoietic stem cells (ATAC-Seq) (Submitter supplied) To ensure the rapid response to stimuli, some HSCs are specifically prepared (primed) for tasks involving activation and reconstitution. However, the key factors that regulate the primed state of HSCs are largely unknown. Here we report that Med23 controls the formation of myeloid-primed HSCs. Ablation of Med23 in hematopoietic system leads to lymphocytopenia. Moreover, Med23-deficient HSCs undergo myeloid-biased differentiation and lose the self-renewal capacity. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112357/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA445739 Series Accession: GSE112357 ID: 200112357 2654. High-Resolution Dissection of Conducive Somatic Cell Reprogramming to Naïve Ground State Pluripotency in Mbd3/NuRD and Gatad2a/NuRD Depleted Systems [ATAC-Seq] (Submitter supplied) Reprogramming of somatic cells to induced pluripotent stem cells provoke immense interest both for clinical applications in regenerative medicine, and in understanding the regulation of cell identity. Previous characterization of the molecular events that underlie this process were limited by the low yield and by the stochastic dynamics of this process. Here we present an in-depth mapping of the molecular events that underlie an efficient and successful reprogramming, covering transcriptional, epigenetic and translational changes in a single day resolution. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA407109 Series Accession: GSE103821 ID: 200103821 2655. High-Resolution Dissection of Conducive Somatic Cell Reprogramming to Naïve Ground State Pluripotency in Mbd3/NuRD and Gatad2a/NuRD Depleted Systems (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing 4 related Platforms 243 Samples FTP download: GEO (BED, TAB, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102518/ Series Accession: GSE102518 ID: 200102518 2656. ILC1 lineage identity is determined by a cis-regulatory element marked by a novel lncRNA (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101459/ Series Accession: GSE101459 ID: 200101459 2657. ILC1 lineage identity is determined by a cis-regulatory element marked by a novel lncRNA [ATAC-seq] (Submitter supplied) Innate lymphoid cells (ILCs) comprise three groups of recently identified tissue resident immune cell lineages that play critical roles in protective immune responses and tissue homeostasis. While significant progress has been made in defining the key protein mediators of ILC development and function, how cis-acting epigenetic regulatory elements or long non-coding RNAs (lncRNAs) regulate ILCs is unknown. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394509 Series Accession: GSE101457 ID: 200101457 2658. Whole genome bisulphite sequencing using the Illumina X system [ATAC-Seq] (Submitter supplied) While Illumina X technology has helped to reduce the cost of whole genome sequencing substantially, its application for bisulphite sequencing is not straightforward. We describe the optimization of a library preparation and sequencing approach that maximizes the yield and quality of sequencing, and how to eliminate a previously unrecognized artefact affecting several percent of bisulphite sequencing reads. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA401851 Series Accession: GSE103301 ID: 200103301 2659. GRHL2-dependent enhancer switching maintains a pluripotent stem cell transcriptional subnetwork after exit from naïve pluripotency [ChIP-Seq] (Submitter supplied) During early development, pluripotent cells of the epiblast show extensive rewiring of enhancers with little associated change in gene expression. The mechanisms underlying and purpose of this rewiring are largely unknown. Here we identified a transcription factor, GRHL2, that is both necessary and sufficient to activate latent enhancers during the transition from naïve embryonic stem cells (ESC) to primed epiblast cells (EpiC). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL21103 56 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA358507 Series Accession: GSE92745 ID: 200092745 2660. Genetic determinants of chromatin accessibility in T cell activation across human individuals [RNA-seq] (Submitter supplied) We analyzed 105 chromatin accessibility (ATAC-seq) profiles in activated primary CD4+ T cells from healthy donors to identify genetic variants associated with variability in chromatin accessibility (ATAC-QTLs).we analyzed 105 chromatin accessibility (ATAC-seq) profiles in activated primary CD4+ T cells from healthy donors to identify genetic variants associated with variability in chromatin accessibility (ATAC-QTLs) Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 107 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA344765 Series Accession: GSE86887 ID: 200086887 2661. Genetic determinants of chromatin accessibility in T cell activation across human individuals [ATAC-seq] (Submitter supplied) We analyzed 105 chromatin accessibility (ATAC-seq) profiles in activated primary CD4+ T cells from healthy donors to identify genetic variants associated with variability in chromatin accessibility (ATAC-QTLs). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 117 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86886/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA344766 Series Accession: GSE86886 ID: 200086886 2662. Open chromatin in somatic cells transplanted into Xenopus oocytes (Submitter supplied) Active gene transcription is associated with an open chromatin configuration at gene regulatory regions. However, the relationship between chromatin architecture of somatic cells and transcriptional activation during nuclear reprogramming in oocytes is unclear. We therefore examined changes in open chromatin states before and after transplantation of mouse somatic nuclei into Xenopus laevis oocytes by using the Assay for Transposase-Accessible Chromatin Sequencing (ATAC-seq). Organism: Mus musculus; Mus musculus musculus x M. m. castaneus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL22270 8 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA386179 Series Accession: GSE98776 ID: 200098776 2663. Characterization of the accessible genome in the human malaria parasite Plasmodium falciparum (Submitter supplied) Background: Human malaria is a major cause of disease and poverty in developing countries being P. falciparum the most deadly of malaria parasites. To successfully develop and adapt within hosts, P. falciparum undergoes drastic switches in chromatin structure and gene expression, but the identity and function of regulatory elements driving these events remain poorly understood. In this work, we performed genome-wide profiling of chromatin accessibility in two culture-adapted subclones and four developmental stages during the intraerythrocytic development by the Assay for Transposase-Accessible Chromatin by sequencing (ATAC-seq). more... Organism: Plasmodium falciparum Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16607 17 Samples FTP download: GEO (BED, BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431449 Series Accession: GSE109599 ID: 200109599 2664. Role of TBP in chromatin accessibility (ATAC-seq) (Submitter supplied) To test the role of TBP in promoting chromatin accessibility through the cell cycle, we performed ATAC-seq analysis. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA475872 Series Accession: GSE115724 ID: 200115724 2665. Gene activation precedes DNA demethylation in response to infection in human dendritic cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 116 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116412/ Series Accession: GSE116412 ID: 200116412 2666. Gene activation precedes DNA demethylation in response to infection in human dendritic cells (Submitter supplied) DNA methylation is considered to be a relatively stable epigenetic mark. Yet, a growing body of evidence indicates that DNA methylation levels can change rapidly, for example, in innate immune cells facing an infectious agent. Nevertheless, the causal relationship between changes in DNA methylation and gene expression during infection remains to be elucidated. Here, we generated time-course data on DNA methylation, gene expression, and chromatin accessibility patterns during infection of human dendritic cells with Mycobacterium tuberculosis. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA478412 Series Accession: GSE116406 ID: 200116406 2667. Genetic determinants of co-accessible chromatin regions in activated T cells across humans (Submitter supplied) Over 90% of genetic variants associated with complex human traits map to non-coding regions, but little is understood about how they modulate gene regulation in health and disease. One possible mechanism is that genetic variants affect the activity of one or more cis-regulatory elements leading to gene expression variation in specific cell types. To identify such cases, we analyzed Assay for Transposase-Accessible Chromatin (ATAC-seq) and RNA-seq profiles from activated primary CD4 + T cells of up to 105 healthy donors. more... Organism: Homo sapiens Type: Other Platform: GPL16791 1 Sample FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115980/ Series Accession: GSE115980 ID: 200115980 2668. In situ Hi-C in Smchd1 wild-type and Smchd1 deleted neural stem cells. [II] (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Other Platform: GPL19057 4 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA476549 Series Accession: GSE115933 ID: 200115933 2669. RRBS in Smchd1 control and Smchd1 deleted male and female neural stem cells. (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA476548 Series Accession: GSE115932 ID: 200115932 2670. Allele-specific H3K27me3, H3K27ac and Ctcf ChIP-seq in Smchd1 control and Smchd1 deleted female neural stem cells. [H3K27ac] (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA439003 Series Accession: GSE112046 ID: 200112046 2671. Allele-specific H3K27me3, H3K27ac and Ctcf ChIP-seq in Smchd1 control and Smchd1 deleted female neural stem cells. [H3K27me3] (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA439001 Series Accession: GSE112045 ID: 200112045 2672. Allele-specific RNA-seq in Smchd1 control and Smchd1 deleted female neural stem cells. (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA439002 Series Accession: GSE112043 ID: 200112043 2673. RNA-seq in Smchd1 wild-type and Smchd1 null presomitic mesoderm from E9.5 embryos (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 7 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA439000 Series Accession: GSE112041 ID: 200112041 2674. Smchd1 in neural stem cells. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Methylation profiling by high throughput sequencing Platform: GPL19057 79 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111726/ Series Accession: GSE111726 ID: 200111726 2675. RNA-seq in Smchd1 wild-type and Smchd1 deleted differentiating male ES cells. (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437972 Series Accession: GSE111724 ID: 200111724 2676. RNA-seq in Smchd1 control and Smchd1 deleted male and female neural stem cells. (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437973 Series Accession: GSE111723 ID: 200111723 2677. ChIP-seq for Smchd1 in male and female neural stem cells. (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 11 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437970 Series Accession: GSE111722 ID: 200111722 2678. ATAC-seq in Smchd1 wild-type and Smchd1 deleted neural stem cells. (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437971 Series Accession: GSE111721 ID: 200111721 2679. In situ Hi-C in Smchd1 wild-type and Smchd1 deleted neural stem cells. (Submitter supplied) We sought to examine whether the non-canonical SMC protein Smchd1 plays a role in chromosome conformation. We used in situ Hi-C to analyse chromosome conformation changes upon deletion of the epigenetic regulator Smchd1 in female neural stem cells. In parallel, we analysed nucleosome accessibility using ATAC-seq, gene expression using RNA-seq, chromatin marks H3K27me3 and H3K27ac and Ctcf binding using ChIP-seq. more... Organism: Mus musculus Type: Other Platform: GPL19057 6 Samples FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA437969 Series Accession: GSE111720 ID: 200111720 2680. Epigenetic and transcriptomic profiling of mammary gland development and tumor models disclose regulators of cell state plasticity (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL19057 GPL17021 57 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116386/ Series Accession: GSE116386 ID: 200116386 2681. Epigenetic and transcriptomic profiling of mammary gland development and tumor models disclose regulators of cell state plasticity [ATAC-seq] (Submitter supplied) We performed ATAC-seq on normal mammary cell populations and mouse mammary tumor cell populations Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 20 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA478338 Series Accession: GSE116383 ID: 200116383 2682. RNA-seq and ATAC-Seq profiling of Suz12-deleted or wild-type organoids derived from basal or luminal mouse mammary epithelial cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 22 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116431/ Series Accession: GSE116431 ID: 200116431 2683. ATAC-Seq chromatin profiling of Suz12-deleted or wild-type organoids derived from basal or luminal mouse mammary epithelial cells (Submitter supplied) Fixed DNA was isolated from organoids grown from single sorted luminal or basal populations from the mammary glands of Rosa26-creERT2 Suz12 flox female mice. Cultures were treated with 4-hydroxytamoxifen to induce deletion of Suz12. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE116nnn/GSE116430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA478459 Series Accession: GSE116430 ID: 200116430 2684. Genome organization and chromatin analysis identify transcriptional downregulation of insulin-like growth factor signaling as a hallmark of aging in developing B cells (Submitter supplied) Background: Ageing is characterised by loss of function of the adaptive immune system, but the underlying causes are poorly understood. To assess the molecular effects of ageing on B cell development, we have profiled gene expression and chromatin features, including histone modifications and chromosome conformation focused on promoter interactions, globally in murine bone marrow pro-B and pre-B cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing Platforms: GPL17021 GPL15103 90 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431625 Series Accession: GSE109671 ID: 200109671 2685. Cooperation between TLX1 and the NUP214-ABL1/STAT5 signaling in T-cell acute lymphoblastic leukemia (Submitter supplied) The NUP214-ABL1 fusion is a constitutively activated tyrosine kinase that is significantly associated with overexpression of the TLX1 or TLX3 transcription factors in T-cell acute lymphoblastic (T-ALL). Here we show that NUP214-ABL1 kinase cooperates with TLX1 in driving T-ALL development using a transgenic mouse model. Using ChIP-seq and ATAC-seq, we show that TLX1 and STAT5, the downstream effector of NUP214-ABL1, selectively increase the accessibility of enhancer regions, and cooperatively activate the expression of key proto-oncogenes such as MYC and BCL2. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL16791 69 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA397010 Series Accession: GSE102209 ID: 200102209 2686. LSD1 inhibition exerts its anti-leukemic effect by recommissioning PU.1- and C/EBPα-dependent enhancers in AML [ATAC-seq] (Submitter supplied) Epigenetic regulators are recurrently mutated and aberrantly expressed in acute myeloid leukemia (AML). Targeted therapies designed to inhibit these chromatin-modifying enzymes, such as the histone demethylase lysine specific demethylase 1 (LSD1) and the histone methyltransferase DOT1L, have been developed as novel treatment modalities for these often refractory diseases. A common feature of many of these targeted agents is their ability to induce myeloid differentiation, suggesting that multiple paths toward a myeloid gene expression program can be engaged to relieve the differentiation blockade that is uniformly seen in AML. more... Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL11154 14 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392930 Series Accession: GSE100757 ID: 200100757 2687. Integrative multi-omics analysis of intestinal organoid differentiation (Submitter supplied) Intestinal organoids accurately recapitulate epithelial homeostasis in vivo, thereby representing a powerful in vitro system to investigate lineage specification and cellular differentiation. Here, we applied a multi-omics framework on stem cell-enriched and stem cell-depleted mouse intestinal organoids to obtain a holistic view of the molecular mechanisms that drive differential gene expression during adult intestinal stem cell differentiation. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 66 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA464352 Series Accession: GSE114113 ID: 200114113 2688. An Atlas of Chromatin Accessibility in the Adult Human Brain (Submitter supplied) The majority of common genetic risk variants associated with neuropsychiatric disease are non-coding and are thought to exert their effects by disrupting the function of cis regulatory elements (CREs), including promoters and enhancers. Within each cell, chromatin is arranged in specific patterns to expose the repertoire of CREs required for optimal spatiotemporal regulation of gene expression. To further our understanding of the complex mechanisms that modulate transcription in the brain, we utilized frozen postmortem samples to generate the largest human brain and cell type-specific open chromatin dataset to date. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 115 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380200 Series Accession: GSE96949 ID: 200096949 2689. Constrained pioneering and partner factor redirection by PU.1 shape early T-cell gene regulation (Submitter supplied) A major problem with linking transcription factor binding to function is that many factors bind to a large number of, at least in any given cell type, seemingly irrelevant regions. This makes it hard to filter out which binding sites are responsible for the regulation of a given gene. PU.1 (Spi1, Sfpi1) is an excellent example of a transcription factor that works both to mediate developmental choices and to serve the alternative developmental fates that emerge from these choices. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL17021 GPL19057 188 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA362299 Series Accession: GSE93755 ID: 200093755 2690. Ligand-insensitive PPARγ controls progressive or reinforcing macrophage polarization as an epigenomic ratchet of transcriptional memory (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 91 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115505/ Series Accession: GSE115505 ID: 200115505 2691. Ligand-insensitive PPARγ controls progressive or reinforcing macrophage polarization as an epigenomic ratchet of transcriptional memory [ATAC-seq] (Submitter supplied) Macrophages change their phenotype in response to complex (reinforcing or opposing) environmental cues. The molecular components providing the epigenomic basis of progressive or reinforcing polarization are largely unknown. Here we show that the normally ligand-activated nuclear receptor, Peroxisome Proliferator-Activated Receptor gamma (PPARγ), is a predominantly ligand-insensitive, epigenomic driver of a robust phenotypic change in macrophages uniquely upon repeated/reinforcing IL-4 stimulation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 20 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA318630 Series Accession: GSE115085 ID: 200115085 2692. Chromatin remodeler CHD8 in CNS myelination and remyelination (Submitter supplied) Mutations in CHD8, an ATP-dependent chromodomain-helicase-DNA-binding protein 8, are known to cause a set of Autism Spectrum Disorders (ASD). We found that CHD8 is highly expressed in myelinating oligodendrocytes (OL) and their progenitors in the developing central nervous system (CNS). We performed CHD8 chIP-seq analysis in cultured oligodendrocytes. Organism: Mus musculus; Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL17021 GPL14844 GPL18694 11 Samples FTP download: GEO (FPKM_TRACKING, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107919/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA421937 Series Accession: GSE107919 ID: 200107919 2693. Stereotyped p53 binding tuned by chromatin accessibility (Submitter supplied) We accessed the cell type specificity of p53 by directly measuring DNA binding in twelve cell lines in response to ionizing radiation. We find that that vast majority of binding sites are occupied across all cells lines uniformly, in contrast to p53 regulated gene expression which shows great diversity in the same context. We further identify a subset of p53 binding sites that are more restricted, appearing in one or a few cell lines. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL18573 66 Samples FTP download: GEO (BED, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391270 Series Accession: GSE100292 ID: 200100292 2694. Integrative analysis of single cell genomics data by coupled nonnegative matrix factorizations (ATAC-Seq) (Submitter supplied) 415 scATAC-seq samples generated for the retinoic acid-induced mESC differenation at day 4. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 415 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA476602 Series Accession: GSE115970 ID: 200115970 2695. p53 binding and chromatin dynamics after etoposide treatment of primary lung fibroblast (Submitter supplied) We report the chromatin modification dynamics at p53 binding sites afte 6 hours of treatment of etoposide (100 micromolar final) in IMR90 human lung fibroblasts using ChIP-seq , ATAC-seq, and polyA+ RNA-seq analyses. We assessed the genomewide occupancy of histone H3, H3K4me3, H3K4me2, H3K4me1, H3K27ac, H4K16ac, RNA polymerase II, p53, and transposase-accessible chromatin (ATAC-seq) in response to etoposide treatment. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL18573 11 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA476558 Series Accession: GSE115940 ID: 200115940 2696. A Dynamic Interplay of Klf4  Enhancer Elements Drives Naïve-pluripotency (Submitter supplied) We characterized a long-range enhancer cluster driving Klf4 expression in naïve pluripotent stem cells. CRISPR/Cas9 mediated screening and genome editing identified DNA motifs corresponding to key pluripotency TFs on these enhancer regions. We employed ChIP-exo genome-wide sequencing to Esrrb and Stat3 in mESCs and validated their functional engagement on the Klf4 enhancer cluster. Moreover, we performed ATAC-seq on wild type and Oct4/Sox2 composite motif biallelic deletion ESCs on Klf4 enhancer E2 to examine the accessible chromatin structure upon loss of lead TFs Oct4 and Sox2 in a single enhancer region. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA381228 Series Accession: GSE97304 ID: 200097304 2697. A single-cell transcriptome atlas of the ageing Drosophila brain (Submitter supplied) The diversity of cell types and regulatory states in the brain, and how these change during ageing, remains largely unknown. We present a single-cell transcriptome atlas of the entire adult Drosophila melanogaster brain sampled across its lifespan. Cell clustering identified 87 initial cell clusters that are further subclustered and validated by targeted cell-sorting. Our data shows high granularity and identifies a wide range of cell types. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21306 GPL19132 128 Samples FTP download: GEO (BW, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA420091 Series Accession: GSE107451 ID: 200107451 2698. Transcriptional repression by FACT is linked to regulation of chromatin accessibility at the promoter of ES cells (Submitter supplied) The conserved and essential histone chaperone FACT (Facilitates Chromatin Transcription) reorganizes nucleosomes during DNA transcription, replication and repair and ensures both, efficient elongation of RNA Pol II and nucleosome integrity. In mammalian cells, FACT is a heterodimer, consisting of SSRP1 and SUPT16. Here, we show that in contrast to yeast, FACT accumulates at the transcription start site of genes reminiscent of RNA Polymerase II profile. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL17021 GPL21103 GPL21493 28 Samples FTP download: GEO (BW, TAB, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90906/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA356303 Series Accession: GSE90906 ID: 200090906 2699. A non-canonical-PPARg/RXRa-binding sequence regulates leptin expression in response to changes in adipose tissue mass (Submitter supplied) Leptin expression decreases after fat loss and is increased when obesity develops and its proper quantitative regulation is essential for the homeostatic control of fat mass. We previously reported that a distant leptin enhancer (LE1), 16kb upstream from the transcription start site (TSS), confers fat-specific expression in a BAC transgenic reporter mouse (BACTG). However this and the other elements that we identified do not account for the quantitative changes in leptin expression that accompany alterations of adipose mass. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BEDGRAPH, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451426 Series Accession: GSE113413 ID: 200113413 2700. Murine mammary epithelial cell methylome and ATAC-seq analyses (Submitter supplied) The following data comes from two separate experiments. In the initial experiment, luminal and basal murine mammary epithelial cells were analyzed by reduced representation bisulfite sequencing (RRBS) to generate methylome profiles. In the second experiment, luminal and basal murine mammary epithelial cells were analyzed by ATAC-seq. Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (BIGWIG, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE80nnn/GSE80181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA318243 Series Accession: GSE80181 ID: 200080181 2701. Tracking adipose-tissue Treg provenance, dependencies, and activities via T cell receptor transgenic mice (Submitter supplied) Regulatory T (Treg) cells located within parenchymal tissues safeguard tissue homeostasis. A paradigmatic "tissue-Treg" population is that found in visceral-adipose tissue (VAT) of male mice. VAT-Treg cells have a unique transcriptome, are clonally expanded, and promote metabolic health through effects on local immunocytes and adipocytes. Because of their rarity and inaccessibility, cardinal questions such as what factors control their accumulation in fat and when/where/how do they adopt their distinctive phenotype remained unanswered. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 26 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA451105 Series Accession: GSE113412 ID: 200113412 2702. RNA- and ATAC-seq data of Wt, Ebf1-KO and Pax5-KO FL-ProB-cells. (Submitter supplied) EBF1 and PAX5 are crucial factors for B-cell development. Knock down of either factor leads to an arrest in differentiation. RNA-seq data of WT, Ebf1-/- and Pax5-/- FL-ProB cells allowed for identification of activated and repressed target genes. ATAC-seq data of corresponding cell populations could connect gene activity and chromatin accessibility. This finding provided an explanation to the lineage instability observed in early B-cell progenitors. more... Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA357562 Series Accession: GSE92434 ID: 200092434 2703. Positional specificity of different transcription factor classes within enhancers (Submitter supplied) Gene expression is controlled by sequence-specific transcription factors (TFs), which bind to regulatory sequences in DNA. The degree to which the arrangement of motif sites within regulatory elements determines their function remains unclear. Here, we show that the positional distribution of TF motif sites within NDRs fall into six distinct classes. These patterns are highly consistent across cell types, and bring together factors that have similar functional and binding properties. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis Platform: GPL18573 2 Samples FTP download: GEO (GAPPEDPEAK, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE115nnn/GSE115438/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA474957 Series Accession: GSE115438 ID: 200115438 2704. High-Resolution temporal profiling of developing pancreas uncovers the mechanisms of endocrine cell fate determination [ATAC-Seq] (Submitter supplied) Chromatin accessibility of endocrine progenitor cells from the e14.5 and e16.5 mouse pancreas Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392309 Series Accession: GSE100621 ID: 200100621 2705. Distinct macrophage populations upon physiological changes in adipose tissue [ATAC-seq] (Submitter supplied) We report that obese fat tissue of mice contain multiple distinct populations of adipose tissue macrophage (ATM) with unique transcriptomes and chromatin landscapes. Mouse Ly6c ATMs express genes that are adipogenic, while CD9 ATMs express pro-inflammatory genes under the control of activating transcription factors. Adoptive transfer of Ly6c ATMs into lean mice activates gene programs typical of normal adipocyte physiology. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA453154 Series Accession: GSE113583 ID: 200113583 2706. The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes [ATAC-seq Grh mutants and Human GRHL] (Submitter supplied) Transcriptional enhancers function as docking platforms for combinations of transcription factors to control gene expression. How enhancer sequences determine nucleosome occupancy, transcription factor recruitment, and transcriptional activation in vivo remains unclear. Using ATAC-seq across a panel of Drosophila inbred strains we found that SNPs affecting Grainyhead binding sites causally determine the accessibility of epithelial enhancers. more... Organism: Homo sapiens; Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL21306 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA422244 Series Accession: GSE108019 ID: 200108019 2707. The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes [scATAC-seq] (Submitter supplied) Transcriptional enhancers function as docking platforms for combinations of transcription factors to control gene expression. How enhancer sequences determine nucleosome occupancy, transcription factor recruitment, and transcriptional activation in vivo remains unclear. Using ATAC-seq across a panel of Drosophila inbred strains we found that SNPs affecting Grainyhead binding sites causally determine the accessibility of epithelial enhancers. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19132 96 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA398011 Series Accession: GSE102544 ID: 200102544 2708. The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Drosophila sechellia; Drosophila simulans; Drosophila yakuba; Drosophila ananassae; Drosophila erecta; Drosophila mojavensis; Drosophila virilis; Drosophila willistoni; Drosophila persimilis; Homo sapiens; Drosophila melanogaster; Drosophila pseudoobscura Type: Genome binding/occupancy profiling by high throughput sequencing 15 related Platforms 175 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102441/ Series Accession: GSE102441 ID: 200102441 2709. The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes [evolutionary study] (Submitter supplied) Transcriptional enhancers function as docking platforms for combinations of transcription factors to control gene expression. How enhancer sequences determine nucleosome occupancy, transcription factor recruitment, and transcriptional activation in vivo remains unclear. Using ATAC-seq across a panel of Drosophila inbred strains we found that SNPs affecting Grainyhead binding sites causally determine the accessibility of epithelial enhancers. more... Organism: Drosophila persimilis; Drosophila erecta; Drosophila mojavensis; Drosophila virilis; Drosophila willistoni; Drosophila ananassae; Drosophila sechellia; Drosophila simulans; Drosophila melanogaster; Drosophila pseudoobscura; Drosophila yakuba Type: Genome binding/occupancy profiling by high throughput sequencing 12 related Platforms 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102439/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA397749 Series Accession: GSE102439 ID: 200102439 2710. The transcription factor Grainyhead primes epithelial enhancers for spatiotemporal activation by displacing nucleosomes [ATAC-seq] (Submitter supplied) Transcriptional enhancers function as docking platforms for combinations of transcription factors to control gene expression. How enhancer sequences determine nucleosome occupancy, transcription factor recruitment, and transcriptional activation in vivo remains unclear. Using ATAC-seq across a panel of Drosophila inbred strains we found that SNPs affecting Grainyhead binding sites causally determine the accessibility of epithelial enhancers. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13304 GPL19132 46 Samples FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395597 Series Accession: GSE101827 ID: 200101827 2711. An integrated global regulatory network of hematopoietic precursor cell self-renewal and differentiation (Submitter supplied) The mammalian blood system is a hierarchically structured tissue. Hematopoietic stem cells (HSC) reside at the top of this hierarchy and the HSC-derived progenitor cells (HPC) have capacities for both differentiation and self-renewal. Systematic study of the regulatory mechanisms of HSC self-renewal and differentiation is fundamentally important for understanding hematopoiesis and for manipulating HSCs for therapeutic purposes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392673 Series Accession: GSE100689 ID: 200100689 2712. Chromatin accessibility dynamics across C. elegans development and ageing [ATAC-seq] (Submitter supplied) An essential step for understanding the transcriptional circuits that control development and physiology is the global identification and characterization of regulatory elements. Here we present the first map of regulatory elements across the development and ageing of an animal, identifying 42,245 elements accessible in at least one C. elegans stage. Based on nuclear transcription profiles, we define 15,918 protein-coding promoters and 17,918 putative enhancers, and find that both types of element can drive orientation-independent transcription. more... Organism: Caenorhabditis elegans Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18730 22 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114439/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471351 Series Accession: GSE114439 ID: 200114439 2713. The SS18-SSX fusion oncoprotein hijacks BAF complex targeting and function to drive synovial sarcoma [ATAC-seq] (Submitter supplied) Synovial sarcoma (SS) is defined by the hallmark SS18-SSX fusion oncoprotein, which renders BAF complexes aberrant in two manners: gain of SSX to the SS18 subunit and concomitant loss of BAF47 subunit assembly. Here we demonstrate that SS18-SSX globally hijacks BAF complexes on chromatin to activate a SS transcriptional signature we define using primary tumors and cell lines. Specifically, SS18-SSX retargets BAF complexes from enhancers to broad polycomb domains to oppose PRC2-mediated repression and activate bivalent genes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471528 Series Accession: GSE114487 ID: 200114487 2714. The SS18-SSX fusion oncoprotein hijacks BAF complex targeting and function to drive synovial sarcoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 124 Samples FTP download: GEO (BROADPEAK, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108028/ Series Accession: GSE108028 ID: 200108028 2715. Next Generation Sequencing for Chromatin accessbility by ATAC-seq for HeLa cell line (Submitter supplied) CCAT1 enhancer is accessible specifically in HeLa, not in MCF7 or MDA-MB-231. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL15520 2 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA415727 Series Accession: GSE106145 ID: 200106145 2716. Diverse AR-V7 cistromes in castration-resistant prostate cancer are governed by HoxB13 (Submitter supplied) The constitutively active androgen receptor (AR) splice variant 7 (AR-V7) plays an important role in the progression of castration-resistant prostate cancer (CRPC). Although biomarker studies established the role of AR-V7 in resistance to AR-targeting therapies, how AR-V7 mediates genomic functions in CRPC remains largely unknown. Using a ChIP-exo approach, we show AR-V7 binds to distinct genomic regions and recognizes a full-length androgen-responsive element in CRPC cells and patient tissues. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL11154 40 Samples FTP download: GEO (BEDGRAPH, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388315 Series Accession: GSE99378 ID: 200099378 2717. Next Generation Sequencing for Chromatin accessbility by ATAC-seq for MDA-MB-231, MCF7 or HCT116 cell line (Submitter supplied) CRISPRi on PVT1 did not induce drastic changes on chromatin accessbility in MDA-MB-231 cell line. CCAT1 enhancer is accessble specifically in HCT116, not in MCF7 or MDA-MB-231. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL15520 GPL20301 10 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA382394 Series Accession: GSE97583 ID: 200097583 2718. Cnidarian cell type diversity revealed by whole-organism single-cell RNA-seq analysis (Submitter supplied) We performed single-cell transcriptome analysis (using MARS-seq) in the cnidarian Nematostella vectensis. Additionally we performed bulk ATAC-seq experiments on wild-type specimens, as well as ELAV::mOrange reporter transgenic lines (separating ELAV+ and ELAV- cell populations, representing neurons and non-neurons, respectively). Organism: Nematostella vectensis Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23029 8 Samples FTP download: GEO (BW, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA378226 Series Accession: GSE95723 ID: 200095723 2719. ATAC-seq reveals GATA-1- and heme-dependent chromatin targeting in erythroid cells. (Submitter supplied) CRISPR/Cas9-mediated ablation of two Alas2 intronic cis-elements in G1E-ER-GATA1 cells strongly reduced GATA-1-induced Alas2 transcription, heme biosynthesis, and GATA-1 regulation of other vital constituents of the erythroid cell transcriptome. Bypassing Alas2 function in Alas2 cis-element-mutant (double mutant) cells by providing its catalytic product 5-aminolevulinic acid (5-ALA) rescued heme biosynthesis and a subset of GATA-1-dependent genetic network. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473494 Series Accession: GSE114996 ID: 200114996 2720. Persistent ER stress in maize seedlings engages ZmIRE1 in a multiphasic process that transitions from prosurvival activities to cell death [ATAC-Seq] (Submitter supplied) Nucleus was isolated from flash frozen from tunicamycin treated (0,6 and 12 hours) maize root samples, purified, then transposition reaction and and purification steps were carried out following the standard ATAC-seq protocol Organism: Zea mays Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL24631 9 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA435499 Series Accession: GSE110987 ID: 200110987 2721. Epigenetic control of innate and adaptive immune memory [ATAC-Seq] (Submitter supplied) Clonal expansion and immunological memory are hallmark features of the mammalian adaptive immune response and essential for prolonged host control of pathogens. Recent work demonstrated that natural killer (NK) cells of the innate immune system also exhibit these adaptive traits during infection. Here we demonstrate that differentiating and ‘memory’ NK cells possess distinct chromatin accessibility states, and that their epigenetic profiles reveal a ‘poised’ regulatory program at the memory stage. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 51 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA422290 Series Accession: GSE108051 ID: 200108051 2722. Analysis of the DNA accessibility upon multiple histone H1 variants by ATAC-seq (Submitter supplied) Combined depletion of H1.2 and H1.4 has a strong deleterious effect in the cancer cells examined, and induces a strong interferon (IFN) response with up-regulation of many IFN-stimulated genes (ISGs), which is not seen in individual H1 knock-downs. Although H1 participates to repress ISG promoters, its activation upon H1 KD is mainly generated by the activation of the IFN response through cytosolic nucleic acids receptors, IFN synthesis and JAK-STAT pathway activation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388343 Series Accession: GSE99384 ID: 200099384 2723. Epigenetic characterization of NKG2C high cells of primigravid decidual NK, multigravid decidual NK, nulligravid endometrial NK and multigravid endometrial NK (Submitter supplied) Natural killer cells (NKs) are abundant in the human decidua. Several diseases of poor placental development are associated with first pregnancies, and we thus looked to characterize differences in decidual NKs in first versus repeated pregnancies. We discovered a population unique to repeated pregnancies, which possesses a novel transcriptome and epigenetic signature, characterized with high expression levels of the receptors NKG2C and LILRB1. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BEDGRAPH, BIGWIG, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392331 Series Accession: GSE100636 ID: 200100636 2724. ChAHP (Adnp, Chd4, HP1) mediates sequence-specific recruitment of HP1 independent of H3K9 methylation (Submitter supplied) Activity-dependent neuroprotective protein (ADNP) is one of the most frequent autism spectrum disorder-associated gene products known to date. Here we show that Adnp interacts with the chromatin remodeler Chd4 and the heterochromatin protein HP1 to form a stable complex, which we refer to as ChAHP. Genetic ablation of ChAHP components or DNA binding sites in embryonic stem cells prematurely activates lineage-specific genes, revealing an important role for Adnp in restraining the differentiation capacity of pluripotent cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 82 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383413 Series Accession: GSE97945 ID: 200097945 2725. Allele-specific control of replication timing and genome organization during development [Repli-Seq] (Submitter supplied) DNA replication occurs in a defined temporal order known as the replication-timing (RT) program. RT is regulated during development in discrete chromosomal units, coordinated with transcriptional activity and 3D genome organization. Here, we derived distinct cell types from F1 hybrid musculus X castaneus mouse crosses and exploited the high single nucleotide polymorphism (SNP) density to characterize allelic differences in RT (Repli-seq), genome organization (Hi-C and promoter-capture Hi-C), gene expression (nuclear RNA-seq) and chromatin accessibility (ATAC-seq). more... Organism: Mus musculus Type: Other Platform: GPL13112 54 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA473044 Series Accession: GSE114747 ID: 200114747 2726. Allele-specific control of replication timing and genome organization during development [Promoter Capture Hi-C] (Submitter supplied) DNA replication occurs in a defined temporal order known as the replication-timing (RT) program. RT is regulated during development in discrete chromosomal units, coordinated with transcriptional activity and 3D genome organization. Here, we derived distinct cell types from F1 hybrid musculus X castaneus mouse crosses and exploited the high single nucleotide polymorphism (SNP) density to characterize allelic differences in RT (Repli-seq), genome organization (Hi-C and promoter-capture Hi-C), gene expression (total nuclear RNA-seq) and chromatin accessibility (ATAC-seq). more... Organism: Mus musculus Type: Other Platform: GPL13112 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA472462 Series Accession: GSE114746 ID: 200114746 2727. Allele-specific control of replication timing and genome organization during development [RNA-Seq] (Submitter supplied) DNA replication occurs in a defined temporal order known as the replication-timing (RT) program. RT is regulated during development in discrete chromosomal units, coordinated with transcriptional activity and 3D genome organization. Here, we derived distinct cell types from F1 hybrid musculus X castaneus mouse crosses and exploited the high single nucleotide polymorphism (SNP) density to characterize allelic differences in RT (Repli-seq), genome organization (Hi-C and promoter-capture Hi-C), gene expression (total nuclear RNA-seq) and chromatin accessibility (ATAC-seq). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA472463 Series Accession: GSE114745 ID: 200114745 2728. Allele-specific control of replication timing and genome organization during development [ATAC-Seq] (Submitter supplied) DNA replication occurs in a defined temporal order known as the replication-timing (RT) program. RT is regulated during development in discrete chromosomal units, coordinated with transcriptional activity and 3D genome organization. Here, we derived distinct cell types from F1 hybrid musculus X castaneus mouse crosses and exploited the high single nucleotide polymorphism (SNP) density to characterize allelic differences in RT (Repli-seq), genome organization (Hi-C and promoter-capture Hi-C), gene expression (total nuclear RNA-seq) and chromatin accessibility (ATAC-seq). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA472464 Series Accession: GSE114744 ID: 200114744 2729. Super-enhancer Driven Core Regulatory Circuitry in MYCN-amplified Neuroblastoma [ATAC-Seq] (Submitter supplied) Transcriptional dysregulation plays a major role in the development and progression of human tumors such as pediatric neuroblastoma. Therefore, we sought to elucidate the relationship between genes required for neuroblastoma cell growth and survival and the transcriptional core regulatory circuitry (CRC) that controls the gene expression program. A genome-scale CRISPR-Cas9 screen for oncogenic dependencies revealed that 143 genes are essential for cell survival and growth in neuroblastoma relative to other cancers, including many super-enhancer (SE) regulated transcription factors. more... Organism: Homo sapiens Type: Other Platform: GPL18573 2 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA374534 Series Accession: GSE94823 ID: 200094823 2730. Gastrointestinal Stromal Tumor Enhancers Support a Transcription Factor Network Predictive of Clinical Outcome (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18573 74 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95864/ Series Accession: GSE95864 ID: 200095864 2731. Gastrointestinal Stromal Tumor Enhancers Support a Transcription Factor Network Predictive of Clinical Outcome (Submitter supplied) Activating mutations in the KIT or PDGFRA receptor tyrosine kinases are hallmarks of gastrointestinal stromal tumor (GIST). The biological underpinnings of recurrence following resection or disease progression beyond kinase mutation are poorly understood. Utilizing chromatin immunoprecipitation with sequencing (ChIP-seq) of tumor samples and cell lines, we describe the enhancer landscape of GIST, highlighting genes that reinforce and extend our understanding of these neoplasms. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95861/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA378616 Series Accession: GSE95861 ID: 200095861 2732. Global chromatin accessibility of gene locus in CD4+ T cells activated with or without OX40 costimulation (Submitter supplied) OX40 is a T cell costimulatory molecule in the tumor necrosis factor receptor (TNFR) superfamily. Unlike other costimulatory molecules, OX40 is not expressed by naive T cells, but its expression is rapidly induced following T cell activation, and OX40 costimulation plays a critical role in cell survival, proliferation, and generation of memory cells. We used ATAC-seq to detail the chromatin accessibility of gene locus of activated CD4 T cells with or without OX40 costimulation in the presence of TGF-β1 and IL-2 and identified distinct classes of genes after OX40 costimulation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471813 Series Accession: GSE114568 ID: 200114568 2733. TCR signal strength controls thymic differentiation of iNKT cell subsets (Submitter supplied) Three major phenotypically and functionally distinct invariant Natural Killer T (iNKT) cell subsets (iNKT1, iNKT17 and iNKT2), each with propensity to traffic to different tissues and to secrete different cytokines upon activation, have been defined. These fate assignments can be conferred upon iNKT cells during development in the thymus, but the cues that direct these decisions remain unclear. Here, we show that T cell antigen receptor (TCR) signal strength governs the development of iNKT cell subsets in the thymus, with high signaling strength necessary for iNKT2 and iNKT17 development. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA436981 Series Accession: GSE111427 ID: 200111427 2734. CTCF boundary remodels chromatin domain and drives aberrant HOX gene transcription in acute myeloid leukemia (Submitter supplied) We analyzed RNA-seq, ATAC-seq, ChIP-seq and 4C-seq data to find that CTCF binding site located between HOXA7 and HOXA9 genes (CBS7/9) is critical for establishing and maintaining aberrant HOXA9-HOXA13 gene expression in AML. Disruption of the CBS7/9 boundary resulted in spreading of repressive H3K27me3 into the posterior active HOXA chromatin domain that subsequently impaired enhancer/promoter chromatin accessibility and disrupted ectopic long-range interactions among the posterior HOXA genes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL21290 GPL18573 16 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450401 Series Accession: GSE113191 ID: 200113191 2735. Analysis of genetically diverse macrophages reveals local and domain-wide mechanisms that control transcription factor binding and function (Submitter supplied) Non-coding genetic variation is a major driver of phenotypic diversity and allows investigation of mechanisms that control gene expression. Here, we systematically investigated the effects of >50 million variations from five strains of mice on mRNA, nascent transcription, transcription start sites and transcription factor binding in resting and activated macrophages. We observed substantial differences associated with distinct molecular pathways. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other Platforms: GPL21103 GPL19057 294 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432435 Series Accession: GSE109965 ID: 200109965 2736. Inherited DNA methylation primes the establishment of accessible chromatin during genome activation (Submitter supplied) For animals, epigenetic modifications can be globally or partially inherited from gametes after fertilization, but the mechanism underlying how the inherited epigenetic signatures affect transcriptional regulation during zygotic genome activation (ZGA) remains poorly understood. Here, we performed genome-wide profiling of chromatin accessibility during zebrafish ZGA, which is closely related to zygotic transcriptional regulation. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23085 38 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395463 Series Accession: GSE101779 ID: 200101779 2737. Single cell RNA-seq and ATAC-seq of EMT induced by TGFbeta stimulation and Zeb1 overexpression (Submitter supplied) We report the application of single cell RNA-sequencing using indrop on an HMLE breast cancer cell line that we induced to undergo EMT. We measured 7523 single cells after 8 and 10 days of stimulation with TGFbeta. In addition, we measured 3496 single cells in an engineered HMLE cell line with Dox inducible Zeb1, after 2 days of stimulation with Doxycycline. Finally, we performed ATAC-seq on CD44 sorted HMLE cells after 8 days of stimulation with TGFbeta. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471293 Series Accession: GSE114397 ID: 200114397 2738. SWI/SNF remains localized to chromatin in the presence of SCHLAP1 (ATAC-seq) (Submitter supplied) Changes to chromatin openness were measured by ATAC seq in RWPE1 cells expression SCHLAP1 or a control cell line infected with a LACZ lentivirus. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA471289 Series Accession: GSE114391 ID: 200114391 2739. ATAC-seq from A549 (ENCSR288YMH) (Submitter supplied) ATAC-seq on A549 cell line treated with 100 nM dexamethasone for 4 hours. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114205/ Series Accession: GSE114205 ID: 200114205 2740. ATAC-seq from A549 (ENCSR265ZXX) (Submitter supplied) ATAC-seq on A549 cell line treated with 100 nM dexamethasone for 12 hours. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114204/ Series Accession: GSE114204 ID: 200114204 2741. ATAC-seq from A549 (ENCSR220ASC) (Submitter supplied) ATAC-seq on A549 cell line treated with 100 nM dexamethasone for 0 hours. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114202/ Series Accession: GSE114202 ID: 200114202 2742. ATAC-seq from A549 (ENCSR139OYS) (Submitter supplied) ATAC-seq on A549 cell line treated with 100 nM dexamethasone for 1 hours. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114201/ Series Accession: GSE114201 ID: 200114201 2743. ATAC-seq from A549 (ENCSR074AHH) (Submitter supplied) ATAC-seq on A549 cell line treated with 100 nM dexamethasone for 8 hours. For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE114nnn/GSE114200/ Series Accession: GSE114200 ID: 200114200 2744. Different Chromatin and DNA Sequence Characteristics Define Glucocorticoid Receptor Binding Sites that are Blocked or Not Blocked by Coregulator Hic-5 [ATAC-seq] (Submitter supplied) The glucocorticoid-activated glucocorticoid receptor (GR) regulates cellular stress pathways by binding to genomic regulatory elements of target genes and recruiting coregulator proteins to remodel chromatin and regulate transcription complex assembly. The coregulator Hydrogen peroxide-inducible clone 5 (Hic-5) is required for glucocorticoid regulation of some genes, but not others, and blocks regulation of a third gene set. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431440 Series Accession: GSE109589 ID: 200109589 2745. Analysis of chromatin landscapes in early human development reveals epigenetic transition during ZGA (Submitter supplied) Upon fertilization, drastic chromatin reorganization occurs during human preimplantation development. However, the global chromatin landscape and its molecular dynamics in this period remain largely unexplored. Deciphering such process is crucial for understanding both early human development and in vitro fertilization. Here, we investigated genome-wide chromatin accessibility in human preimplantation embryos by employing an improved ATAC-seq that uses as few as 20 cells. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL11154 GPL16791 55 Samples FTP download: GEO (BED, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394846 Series Accession: GSE101571 ID: 200101571 2746. Uhrf1 regulates active transcriptional marks at bivalent domains in pluripotent stem cells through Setd1a (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 43 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113915/ Series Accession: GSE113915 ID: 200113915 2747. Uhrf1 regulates active transcriptional marks at bivalent domains in pluripotent stem cells through Setd1a [ATAC-Seq] (Submitter supplied) Embryonic stem cells (ESCs) maintain pluripotency through unique epigenetic states. When ESCs commit to a specific cell lineage, changes in histone modifications and DNA methylation accompany the transition to more specialized cell types. Investigating how epigenetic regulation maintains pluripotency is a critical component in order to generate the required cell types for future clinical application. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA454458 Series Accession: GSE113912 ID: 200113912 2748. Long genes linked to autism harbor intragenic super-enhancer-like chromatin domains (Submitter supplied) Genetic variants associated with autism spectrum disorders (ASDs) are enriched for genes encoding synaptic proteins and chromatin regulators. Although the role of synaptic proteins in ASDs is well studied, the mechanism by which disruptions of chromatin regulators promote the development of ASDs remains unclear. Here we identify 184 neuronal long genes containing super-enhancer-like chromatin modifications across their gene bodies, which we term SE long genes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL13112 16 Samples FTP download: GEO (BEDGRAPH, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA413087 Series Accession: GSE104576 ID: 200104576 2749. CBFb-SMMHC inhibition triggers apoptosis by disrupting MYC chromatin dynamics in acute myeloid leukemia (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL11154 GPL20301 20 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101791/ Series Accession: GSE101791 ID: 200101791 2750. CBFb-SMMHC inhibition triggers apoptosis by disrupting MYC chromatin dynamics in acute myeloid leukemia [ATAC-seq] (Submitter supplied) We recently reported the discovery of a small molecule inhibitor, AI-10-49 which can specially inhibit the protein-protein interaction between RUNX1 tumor suppressor and CBFβ-SMMHC oncogene. We also demonstrated that AI-10-49 can re-establish the RUNX1 transcriptional program in inv(16) cells and can extend the survival of inv(16) leukemic mice. To identify the changes in chromatin accessibility associated with AI-10-49, we performed ATAC-seq analysis in ME-1 cells [human inv(16) leukemia cell line] treated with AI-10-49. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395542 Series Accession: GSE101790 ID: 200101790 2751. UTX-mediated enhancer and chromatin remodeling suppresses myeloid leukemogenesis through noncatalytic inverse regulation of ETS and GATA programs (Submitter supplied) The histone H3 Lys27-specific demethylase UTX (or KDM6A) is targeted by loss-of-function mutations in multiple cancers. Here, we demonstrate that UTX suppresses myeloid leukemogenesis through noncatalytic functions, a property shared with its catalytically inactive Y-chromosome paralog, UTY (or KDM6C). In keeping with this, we demonstrate concomitant loss/mutation of KDM6A (UTX) and UTY in multiple human cancers. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 24 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA393986 Series Accession: GSE101307 ID: 200101307 2752. UTX-mediated chromatin remodeling suppresses myeloid leukaemogenesis through non-catalytic inverse regulation of ETS and GATA transcriptional programs (ATAC-Seq) (Submitter supplied) The H3K27 lysine-specific demethylase UTX is targeted by loss-of-function mutations in multiple cancers. Here, we demonstrate that UTX suppresses myeloid leukaemogenesis through non-catalytic functions, a property it shares with its catalytically inactive Y-chromosome paralogue, UTY. In keeping with this, we demonstrate concomitant loss/mutation of UTX and UTY in multiple human cancers. Mechanistically, global genomic profiling revealed only minor changes in H3K27Me3, but significant and bidirectional alterations of H3K27Ac and chromatin accessibility, alterations in ETS and GATA factor binding and altered gene expression upon Utx loss. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA342032 Series Accession: GSE86489 ID: 200086489 2753. UTX-mediated chromatin remodeling suppresses myeloid leukaemogenesis through non-catalytic inverse regulation of ETS and GATA transcriptional programs (ChIP-Seq) (Submitter supplied) The H3K27 lysine-specific demethylase UTX is targeted by loss-of-function mutations in multiple cancers. Here, we demonstrate that UTX suppresses myeloid leukaemogenesis through non-catalytic functions, a property it shares with its catalytically inactive Y-chromosome paralogue, UTY. In keeping with this, we demonstrate concomitant loss/mutation of UTX and UTY in multiple human cancers. Mechanistically, global genomic profiling revealed only minor changes in H3K27Me3, but significant and bidirectional alterations of H3K27Ac and chromatin accessibility, alterations in ETS and GATA factor binding and altered gene expression upon Utx loss. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 14 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA342033 Series Accession: GSE86488 ID: 200086488 2754. Comprehensive Epigenetic Landscape of Rheumatoid Arthritis Fibroblast-like Synoviocytes [ATAC-seq] (Submitter supplied) Epigenetics is important in the pathogenesis of immune-mediated diseases like rheumatoid arthritis (RA). Here we show the first complete epigenomic characterization of RA fibroblast-like synoviocytes (FLS) by profiling histone modifications (H3K27ac, H3K4me1, H3K4me3, H3K36me3, H3K27me3, H3K9me3), open chromatin, RNA expression and whole genome DNA methylation. To address the complex multidimensional relationship and reveal the epigenetic regulation of RA, we perform integrative analyses using a novel unbiased method to identify genomic regions with similar profiles. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 22 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE112nnn/GSE112654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA448631 Series Accession: GSE112654 ID: 200112654 2755. Epigenetic profiling of sorted tumor cells from implanted T cell low and T cell high mouse pancreatic tumors (Submitter supplied) Purpose: Use ATAC-seq strategy to characterize the differentially openned chromatin region in T cell low and high mouse pancreatic tumors in order to identify factors contributing to the differential abundance of tumor infiltrating T cells. Methods: Subcutaneously implanted T cell low and high pancreatic tumors were utilized for the preparation of ATAC-seq libraries from sorted tumor cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 15 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432376 Series Accession: GSE109935 ID: 200109935 2756. RNA-seq and ATAC-seq profiling of T cell low and T cell high mouse pancreatic tumors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21626 GPL21103 91 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109972/ Series Accession: GSE109972 ID: 200109972 2757. Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation [bulk RNA-Seq] (Submitter supplied) Normal human hematopoiesis involves cellular differentiation of multipotent cells into progressively more lineage-restricted states. While epigenomic landscapes of this process have been explored in immunophenotypically-defined populations, the single-cell regulatory variation that defines hematopoietic differentiation has been hidden by ensemble averaging. We generated single-cell chromatin accessibility landscapes across 8 populations of immunophenotypically-defined human hematopoietic cell types. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96811/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379785 Series Accession: GSE96811 ID: 200096811 2758. Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation [bulk ATAC-Seq] (Submitter supplied) Normal human hematopoiesis involves cellular differentiation of multipotent cells into progressively more lineage-restricted states. While epigenomic landscapes of this process have been explored in immunophenotypically-defined populations, the single-cell regulatory variation that defines hematopoietic differentiation has been hidden by ensemble averaging. We generated single-cell chromatin accessibility landscapes across 8 populations of immunophenotypically-defined human hematopoietic cell types. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 13 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379614 Series Accession: GSE96771 ID: 200096771 2759. Single-cell epigenomics maps the continuous regulatory landscape of human hematopoietic differentiation [scATAC-Seq] (Submitter supplied) Normal human hematopoiesis involves cellular differentiation of multipotent cells into progressively more lineage-restricted states. While epigenomic landscapes of this process have been explored in immunophenotypically-defined populations, the single-cell regulatory variation that defines hematopoietic differentiation has been hidden by ensemble averaging. We generated single-cell chromatin accessibility landscapes across 8 populations of immunophenotypically-defined human hematopoietic cell types. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2784 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379613 Series Accession: GSE96769 ID: 200096769 2760. The evolutionary emergence of the rac3b/rfng/sgca regulatory cluster refined mechanisms for hindbrain boundaries formation (Submitter supplied) Developmental programs often rely on parallel morphogenetic mechanisms that guarantee precise tissue architecture. While redundancy constitutes an obvious selective advantage, little is known on how novel morphogenetic mechanisms emerge during evolution. In zebrafish, rhombomeric boundaries behave as an elastic barrier, preventing cell intermingling between adjacent compartments. Here, we identify the fundamental role of the small-GTPase Rac3b in actomyosin cables assembly at hindbrain boundaries. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18413 4 Samples FTP download: GEO (BEDGRAPH, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA430182 Series Accession: GSE109219 ID: 200109219 2761. TFAP2C regulates transcription in human naive pluripotency by opening enhancers (Submitter supplied) Naive and primed pluripotent human embryonic stem cells bear transcriptional similarity to pre- and post-implantation epiblast and thus constitute a developmental model for understanding the pluripotent stages in human embryo development. To identify new transcription factors that differentially regulate the unique pluripotent stages, we mapped open chromatin using ATAC-seq and found enrichment of the activator protein-2 (AP2) transcription factor binding motif at naive-specific open chromatin. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 109 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA393683 Series Accession: GSE101074 ID: 200101074 2762. Open chromatin landscape of mouse embryonic stem cells (Submitter supplied) ATAC-seq data of E14 mouse embryonic stem cells Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 1 Sample FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA453185 Series Accession: GSE113592 ID: 200113592 2763. NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence [RNA-Seq] (Submitter supplied) We decribe the accessible chormatin landscape in RAS-induced (RIS) and NOTCH induced senescence (NIS) using ATAC-seq. By expressing active NOTCH (N1ICD) in the context of RIS, we find that N1ICD antagonises the formation of accessible regions in RIS. By performing co-cultures, we demonstrate that cells expressing a NOTCH1 ligand, JAGGED1, can antagonise the formation of RIS specific accessible regions. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 24 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA449912 Series Accession: GSE113060 ID: 200113060 2764. NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence [ChIP-Seq] (Submitter supplied) We describe the accessible chormatin landscape in RAS-induced (RIS) and NOTCH induced senescence (NIS) using ATAC-seq. By expressing active NOTCH (N1ICD) in the context of RIS, we find that N1ICD antagonizes the formation of accessible regions in RIS. By performing co-cultures, we demonstrate that cells expressing a NOTCH1 ligand, JAGGED1, can antagonize the formation of RIS specific accessible regions. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 32 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA402016 Series Accession: GSE103589 ID: 200103589 2765. NOTCH-mediated non-cell autonomous regulation of chromatin structure during senescence [ATAC-Seq] (Submitter supplied) We describe the accessible chormatin landscape in RAS-induced (RIS) and NOTCH induced senescence (NIS) using ATAC-seq. By expressing active NOTCH (N1ICD) in the context of RIS, we find that N1ICD antagonizes the formation of accessible regions in RIS. By performing co-cultures, we demonstrate that cells expressing a NOTCH1 ligand, JAGGED1, can antagonize the formation of RIS specific accessible regions. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 24 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA402015 Series Accession: GSE103588 ID: 200103588 2766. Prerequisite Barcoding of Cell-Type-Restricted Enhancers by ESC Transcription Factors in ESCs Licenses Their Robust Developmental Activation [ATAC-Seq] (Submitter supplied) While cell-type-restricted enhancers are initially detected following cooperative binding of positionally-determined DNA binding transcription factors during determination/differentiation, it remains unknown whether there are preceding events in embryonic stem cells (ESCs) that are functionally important to activate cell-type-restricted enhancer networks. Here, using murine macrophages as a model, we report that, while largely devoid of characteristic enhancer marks (H3K4me1, H3K4me2, H3K27Ac, H3K27me3 and p300) in ESCs, macrophage enhancers are activated as transcription units mainly by the binding of a single, at most two, ESC transcription factors. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL21103 4 Samples FTP download: GEO (BEDGRAPH, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA322297 Series Accession: GSE81679 ID: 200081679 2767. ATAC-Seq of CD8+ T cells during activaion in vitro over the course 24 hours with and without Runx3 (Submitter supplied) T cell receptor (TCR) stimulation of naïve CD8+ T cells initiates reprogramming of cis-regulatory landscapes that specify effector and memory cytotoxic T lymphocyte (CTL) differentiation. We mapped regions of hyper-accessible chromatin in naïve cells during TCR stimulation and discovered that the transcription factor (TF) Runx3 controls de novo access to memory CTL-specific cistromes prior to the first cell division, and is essential for memory CTL differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 20 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA436008 Series Accession: GSE111144 ID: 200111144 2768. Gene regulatory network architecture in different developmental contexts influences the genetic basis of morphological evolution (Submitter supplied) Convergent phenotypic evolution is often caused by recurrent changes at particular nodes in the underlying gene regulatory networks (GRNs). The genes at such evolutionary 'hotspots' are thought to maximally affect the phenotype with minimal pleiotropic consequences. This has led to the suggestion that if a GRN is understood in sufficient detail, the path of evolution may be predictable. The repeated evolutionary loss of larval trichomes among Drosophila species is caused by the loss of shavenbaby (svb) expression. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17275 GPL21306 12 Samples FTP download: GEO (BED, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450538 Series Accession: GSE113240 ID: 200113240 2769. Epigenetic changes induced by Bacteroides fragilis toxin (BFT) [ATAC-seq] (Submitter supplied) Purpose: The goal of this study is to determine how BFT2 alters chromatin accessibility at relatively early time points in colon epithelial cells, and to correlate the changes in chromatin accessibility with changes in gene expression, transcription factor binding sites, and the location of common single nucleotide variants (SNVs) and differentially methylated regions (DMRs) in colorectal cancer. Methods: HT29/C1 cells were plated at low density and allowed to grow for 4 days at 37C and 10% CO2. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE113nnn/GSE113219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA450440 Series Accession: GSE113219 ID: 200113219 2770. Spt6 association with RNAPII directs mRNA turnover during transcription (Submitter supplied) Spt6 is an essential histone chaperone that mediates nucleosome reassembly during gene transcription. Spt6 interacts with elongating RNA polymerase II (RNAPII) via a tandem Src2 homology (tSH2) domain, but it is not known whether this particular interaction is required for the nucleosome reassembly activity of Spt6. Here, we show that Spt6 recruitment to genes and its nucleosome reassembly functions are largely independent of association with RNAPII. more... Organism: Saccharomyces cerevisiae Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17342 12 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA438236 Series Accession: GSE111815 ID: 200111815 2771. Srf destabilizes cell identity (ATAC-seq) (Submitter supplied) Multicellular organisms consist of multiple cell types, whose identities are maintained appropriately at locations where they are reside. The identity of each cell type is primarily maintained by cell-type-specific gene expression programs, but mechanisms that suppress these programs are poorly defined. Here we show that serum response factor (Srf), a transcription factor that is activated by various extracellular stimuli, can repress cell-type-specific genes and promote cellular reprogramming to pluripotency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416287 Series Accession: GSE106318 ID: 200106318 2772. 5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (Bisulfite-Seq) (Submitter supplied) We generated 5hmC, WGBS and RNAseq of the cells in 5 stages during hES-to-pancreatic endoderm cell differantiation, and investigated the 5hmC correlation with 4 histones (H3K4me1, H3K4me3, H3K27ac and H3K27me3) during this process. Our results showed that 5hmC is dynamically correlate with enhancers' activities. Organism: Homo sapiens Type: Methylation profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383581 Series Accession: GSE97991 ID: 200097991 2773. 5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (RNA-Seq) (Submitter supplied) We generated 5hmC, WGBS and RNAseq of the cells in 5 stages during hES-to-pancreatic endoderm cell differantiation, and investigated the 5hmC correlation with 4 histones (H3K4me1, H3K4me3, H3K27ac and H3K27me3) during this process. Our results showed that 5hmC is dynamically correlate with enhancers' activities. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383582 Series Accession: GSE97990 ID: 200097990 2774. 5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (ATAC-Seq) (Submitter supplied) We generated 5hmC, WGBS and RNAseq of the cells in 5 stages during hES-to-pancreatic endoderm cell differantiation, and investigated the 5hmC correlation with 4 histones (H3K4me1, H3K4me3, H3K27ac and H3K27me3) during this process. Our results showed that 5hmC is dynamically correlate with enhancers' activities. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 5 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383583 Series Accession: GSE97989 ID: 200097989 2775. 5hmC dynamically correlated with enhancer's activities during hES-to-Pancreatic endoderm cell differentiation (CMS) (Submitter supplied) We generated 5hmC, WGBS and RNAseq of the cells in 5 stages during hES-to-pancreatic endoderm cell differantiation, and investigated the 5hmC correlation with 4 histones (H3K4me1, H3K4me3, H3K27ac and H3K27me3) during this process. Our results showed that 5hmC is dynamically correlate with enhancers' activities. Organism: Homo sapiens Type: Methylation profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383584 Series Accession: GSE97988 ID: 200097988 2776. BRD4 profiling identifies critical Chronic Lymphocytic Leukemia oncogenic circuits and reveals sensitivity to PLX51107, a novel structurally distinct BET inhibitor [ChIP-seq] (Submitter supplied) Bromodomain and extra-terminal (BET) family proteins are key regulators of gene expression in cancer. Herein, we utilize BRD4 profiling to identify critical pathways involved in pathogenesis of chronic lymphocytic leukemia (CLL). BRD4 is over-expressed in CLL and is enriched proximal to genes up-regulated or de novo expressed in CLL with known function in disease pathogenesis and progression. These genes, including key members of the BCR signaling pathway, provide rationale for this therapeutic approach to identify new targets in alternative types of cancer. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL20301 GPL18573 49 Samples FTP download: GEO (BED, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA430819 Series Accession: GSE109411 ID: 200109411 2777. Sex reversal following the deletion of a single far upstream enhancer of Sox9. (Submitter supplied) Purpose: In this study we employed unbiased, genome wide techniques to identify novel enhancers of Sox9 that may cause Disorders of Sex Development (DSDs) when disrupted in the mouse. Methods: We performed ATAC-seq on 60K FACS-purified gonadal cells before and after sex determination to map nucleosome depleted regions (NDRs) indicative of regulatory elements. We then selected 16 putative enhancers present in Sertoli cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 22 Samples FTP download: GEO (BEDGRAPH, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388103 Series Accession: GSE99320 ID: 200099320 2778. SCML2 establishes germline-specific bivalent domains. (Submitter supplied) Bivalent domains marked with repressive H3K27me3 and activating H3K4me2/3 are a molecular signature of totipotency in stem cells and development. While bivalent domains are retained throughout the germline to recover totipotency in the next generation, the mechanisms establishing bivalent domains remains unknown. Here we demonstrate that a germline-specific Polycomb protein, SCML2, binds to chromatin containing hypomethylated DNA to induce H3K27me3, thereby initiating the establishment of germline-specific bivalent domains in mice. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 49 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89502/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352397 Series Accession: GSE89502 ID: 200089502 2779. Chromatin accessibility based characterization of gene regulatory network of P. falciparum blood stage development (Submitter supplied) We present ATAC-seq combined with direction RNA seq data for eight time points across the intraerythorcytic development cycle of Plasmodium falciparum 3D7. ATAC peaks were called by MACS2 using ATAC-seq libraries generated with genomic DNA as a control. The majority of identified ATAC peaks were located in intergenic regions and captured most (95%) of previously identified binding sites of the transcription factor required for the expression of most invasion-related genes PfAP2-I (Santos et al., 2017). more... Organism: Plasmodium falciparum Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21298 26 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA408158 Series Accession: GSE104075 ID: 200104075 2780. Chromatin Accessibility Dynamics during Chemical Induction of Pluripotency [RNA-seq] (Submitter supplied) Chemical induction of pluripotency (CIP) is an ideal way to reprogram cell fate, but remains poorly understood. Here we report the development of an efficient CIP protocol and the chromatin accessibility dynamics (CAD) during CIP by ATAC-seq. CIP first reorganizes the somatic genome to an intermediate state that must be resolved by primarily closing loci opened earlier before reaching a pluripotent state with gradual opening of loci enriched with motifs for the OCT/SOX/KLF families. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 26 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433333 Series Accession: GSE110263 ID: 200110263 2781. Chromatin Accessibility Dynamics during Chemical Induction of Pluripotency [ChIP-seq] (Submitter supplied) Chemical induction of pluripotency (CIP) is an ideal way to reprogram cell fate, but remains poorly understood. Here we report the development of an efficient CIP protocol and the chromatin accessibility dynamics (CAD) during CIP by ATAC-seq. CIP first reorganizes the somatic genome to an intermediate state that must be resolved by primarily closing loci opened earlier before reaching a pluripotent state with gradual opening of loci enriched with motifs for the OCT/SOX/KLF families. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433335 Series Accession: GSE110262 ID: 200110262 2782. Chromatin Accessibility Dynamics during Chemical Induction of Pluripotency [ATAC-Seq] (Submitter supplied) Chemical induction of pluripotency (CIP) is an ideal way to reprogram cell fate, but remains poorly understood. Here we report the development of an efficient CIP protocol and the chromatin accessibility dynamics (CAD) during CIP by ATAC-seq. CIP first reorganizes the somatic genome to an intermediate state that must be resolved by primarily closing loci opened earlier before reaching a pluripotent state with gradual opening of loci enriched with motifs for the OCT/SOX/KLF families. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433336 Series Accession: GSE110261 ID: 200110261 2783. DNA-binding pluripotency factors and DNA demethylases can cooperate to maintain pluripotent stem cell identity even in the absence of Brd4 [ATAC-seq] (Submitter supplied) The relative contributions of sequence-specific transcription factors and DNA/histone modifications to stem cell maintenance remains controversial. For example, the acetyllysine reader Brd4 has been implicated in stem cell maintenance, but how absolute the role of Brd4 is in maintaining pluripotency remains unclear. Here we show that Brd4 is dispensable for the proliferation, self-renewal and pluripotency of embryonic stem cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 32 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA377755 Series Accession: GSE95641 ID: 200095641 2784. Global dynamics of stage-specific transcription factor binding during thymocyte development (Submitter supplied) ATAC-seq in DN, DP, CD4 SP and CD8 SP thymocytes isolated from 9 weeks-old wild type C57BL/6J mouse Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 16 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA418973 Series Accession: GSE107076 ID: 200107076 2785. Epigenetic profiling of OVA-specific CD8+ TILs from mice treated with control, anti-B7S1, anti-PD-1 or anti-B7S1+anti-PD-1 antibodies (Submitter supplied) Combinational blockade of B7S1 and PD-1 exhibits stronger anti-tumor efficacy than monotherapies. In order to further understand the mechanisms whereby blockade of B7S1 or PD-1 inhibits tumor growth, we conducted ATAC-seq analysis of OVA-specific CD8+ TILs from E.G7-bearing mice treated with control antibodies, anti-B7S1, anti-PD-1 monotherapy or combinational therapy. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21273 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433479 Series Accession: GSE110251 ID: 200110251 2786. Chromatin accessibility profiling identifies cis-regulatory modules in an early embryonic cell lineage (Submitter supplied) We used DNase-seq and ATAC-seq to identify a set of putative CRMs regulating skeletogenic gene expression during sea urchin embryogenesis. These CRMs, identified by differential chromatin accessibility, are likely to be regulated by two upstream TFs, Alx1 and Ets1, that are part of the skeletogenic GRN. 9/31 od these identified CRMs were validated by reporter gene assay. Our work demonstrates the value of using differential chromatin accessibility for the high-throughput identification of CRMs in embryonic tissues. Organism: Strongylocentrotus purpuratus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL23218 GPL19892 10 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380123 Series Accession: GSE96927 ID: 200096927 2787. X Chromosome Dosage Modulates Multiple Molecular and Cellular Properties of Mouse Pluripotent Stem Cells Independently of Global DNA Methylation Levels (Submitter supplied) During early mammalian development, the two X-chromosomes in female cells are active. Dosage compensation between XX female and XY male cells is then achieved by X-chromosome inactivation in female cells. Reprogramming female mouse somatic cells into induced pluripotent stem cells (iPSCs) leads to X-chromosome reactivation. The extent to which increased X-chromosome dosage (X-dosage) in female iPSCs leads to differences in the molecular and cellular properties of XX and XY iPSCs is still unclear. more... Organism: Mus musculus; Mus musculus musculus x M. m. castaneus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL24587 GPL21103 52 Samples FTP download: GEO (BW, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA433190 Series Accession: GSE110215 ID: 200110215 2788. Direct Promoter Repression by BCL11A Controls the Fetal to Adult Hemoglobin Switch (Submitter supplied) Fetal hemoglobin (HbF) level is genetically controlled and modifies severity of adult hemoglobin (HbA) disorders. Common genetic variation affects expression of BCL11A, a critical regulator of HbF silencing. Current models suggest that BCL11A acts at a distance from the gamma-globin genes via long-distance chromosomal interactions. Here we use a functional cellular assay and protein-binding microarray to establish a requirement for a zinc-finger cluster of BCL11A for globin repression, and identify a preferred DNA recognition sequence (TGACCA). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 36 Samples FTP download: GEO (BED, BROADPEAK, BW, GAPPEDPEAK, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA413473 Series Accession: GSE104676 ID: 200104676 2789. Epigenetic regulation of in vivo B cell Differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 25 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97698/ Series Accession: GSE97698 ID: 200097698 2790. Division-Specific Accessibility Program of B cell Differentiation (Submitter supplied) B cell differentiation occurs over multiple cellular divisions and involves a switch in transcriptional programs that allows for antibody secretion. The transcription factors that drive this process have been studied but the epigenetic mechanisms and sites these factors function at are not well understood. Here we investigated the distinct changes in chromatin accessibility that occured at distinct cellular divisions during in vivo B cell differentiation. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA382687 Series Accession: GSE97694 ID: 200097694 2791. Inhibitors of LSD1 target demethylase-independent activity to induce differentiation in acute myeloid leukemia [ATAC-Seq] (Submitter supplied) To identify regions of genome accessibility influenced by LSD1 inhibition, THP1 AML cells were subjected to ATAC sequencing. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA355877 Series Accession: GSE90770 ID: 200090770 2792. ATAC-Seq analysis in vasopressin-responsive mouse renal collecting duct mpkCCD cells (Submitter supplied) Vasopressin, a peptide hormone, controls renal water excretion, largely through regulation of water channel aquaporin-2 (AQP2) in the renal collecting duct. There are two regulatory mechanisms of AQP2: 1) short-term regulation by membrane trafficking of AQP2; and 2) long-term regulation involving vasopressin-induced changes of protein abundance of AQP2 through regulation of gene transcription and protein half-life. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21493 4 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA428530 Series Accession: GSE108786 ID: 200108786 2793. HIV-1 infection of human monocyte-derived dendritic cells with and without the integrase inhibitor, Raltegravir (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17077 GPL18573 56 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100377/ Series Accession: GSE100377 ID: 200100377 2794. HIV-1 infection of human monocyte-derived dendritic cells with and without the integrase inhibitor, Raltegravir (ATAC-Seq). (Submitter supplied) Myeloid dendritic cells (DCs) have the innate capacity to sense pathogens and orchestrate immune responses. However, DCs do not mount efficient immune responses to HIV-1, due to potent restriction at the level of reverse transcription. Here, we uncover that when reverse transcription is allowed to proceed, DCs detect HIV-1 in distinct phases, before and after integration. Blocking integration suppressed, but did not abolish, activation of the transcription factor, IRF3, interferon responses, and DC maturation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391485 Series Accession: GSE100376 ID: 200100376 2795. Polycomb repressive complex 1 defines the nucleosome landscape but not accessibility at target genes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 61 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98403/ Series Accession: GSE98403 ID: 200098403 2796. Polycomb repressive complex 1 regulates the nucleosome landscape but not accessibility at target genes [RNA-seq] (Submitter supplied) Polycomb repressive complexes 1 and 2 (PRC1/2) act to limit transcriptional activity at gene promoters. One of the mechanisms by which they are proposed to achieve this is through the compaction of nucleosomal chromatin. However, this model is based largely upon in vitro studies and has yet to be explored sufficiently in living cells. We therefore characterised the chromatin accessibility of Polycomb-occupied gene promoters using assay for transposase accessible chromatin (ATAC-seq). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 16 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA385003 Series Accession: GSE98400 ID: 200098400 2797. Polycomb repressive complex 1 regulates the nucleosome landscape but not accessibility at target genes [ATAC-seq] (Submitter supplied) Polycomb repressive complexes 1 and 2 (PRC1/2) act to limit transcriptional activity at gene promoters. One of the mechanisms by which they are proposed to achieve this is through the compaction of nucleosomal chromatin. However, this model is based largely upon in vitro studies and has yet to be explored sufficiently in living cells. We therefore characterised the chromatin accessibility of Polycomb-occupied gene promoters using assay for transposase accessible chromatin (ATAC-seq). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 33 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA384987 Series Accession: GSE98390 ID: 200098390 2798. Compendium of CD8+ T cell Data (Submitter supplied) Compendium of high-throughput sequencing datasets derived from murine CD8+ T cells responding to infection, profiled by RNA-seq, ChIP-seq, and ATAC-seq at Naïve, Effector, and Memory timepoints across the Kaech, Goldrath, and Pereira labs, and ChIP-seq of various transcription factors across several labs Submission contains both original data from the Kaech lab and reanalysis of data from the Pereira and Goldrath labs, as well as various other labs corresponding to individual transcription factor ChIP-seq datasets, totaling to 96 reanalyzed GSM samples across several GSE series Included GSE series are: GSE95237 (Genome-wide maps of chromatin state and chromatin accessibility in CD8 T cell subsets), GSE95238 (Epigenetic landscapes reveal transcription factors that regulate CD8+ T cell differentiation), GSE88987 (Dynamic changes in chromatin accessibility in CD8+ T cells responding to viral infection), GSE58075 (Genome-wide mapping of Myc, AP4, and phosphorylated RNA polymerase II binding in activated CD8 T cells by ChIP sequencing), GSE54191 (ChIP-Seq analysis of BATF, IRF4, the Jun proteins, and histone modifications in effector CD8+ T cells), GSE20898 (Genome-wide Analyses of Transcription Factor GATA3-Mediated Gene Regulation in Distinct T Cell Types), GSE46943 (Transcription Factor Foxo1 Controls Memory CD8+ T Cell Responses To Infection [ChIP-Seq]), GSE72997 (ChIP-Seq analysis of Helios and histone modifications in CD4+ and CD8+ Tregs), GSE50128 (Genome-wide maps of Runx3 bound regions in splenic IL-2-activated CD8+ T cells), GSE72565 (Binding of STAT5 upon IL-2 treatment to genomic sites in mouse CD8 T cells costimulated in vivo through CD134 plus CD137), GSE49930 (The transcription factor IRF4 is essential for T cell receptor affinity mediated metabolic programming and clonal expansion of T cells [ChIP-seq]), and GSE52070 (Genome-wide maps of Tcf1 binding locations in splenic CD8 T cells) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Third-party reanalysis Platform: GPL17021 67 Samples FTP download: GEO (BROADPEAK, BW, NARROWPEAK, TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA438595 Series Accession: GSE111902 ID: 200111902 2799. Novel transcriptional networks regulated by CLOCK in human neurons (Submitter supplied) The molecular mechanisms underlying human brain evolution are not fully understood; however, previous work suggested that expression of the transcription factor CLOCK in the human cortex might be relevant to human cognition and disease. In this study, we investigated this novel transcriptional role for CLOCK in human neurons by performing chromatin-immunoprecipitation sequencing for endogenous CLOCK in adult neocortex and RNA-sequencing following CLOCK knockdown in differentiated human neurons in vitro. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL16791 209 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379305 Series Accession: GSE96659 ID: 200096659 2800. Clinical and genomic crosstalk between glucocorticoid receptor and estrogen receptor α in endometrial cancer [RNA-seq] (Submitter supplied) Steroid hormone receptors are simultaneously active in many tissues and capable of altering each other's function. Estrogen receptor ɑ (ER) and glucocorticoid receptor (GR) are expressed in the uterus and their ligands have opposing effects on uterine growth. In endometrial tumors expressing high levels of ER, we surprisingly found that expression of GR is associated with poor prognosis. Dexamethasone reduced normal uterine growth in vivo; however, this growth inhibition was abolished in estrogen-induced endometrial hyperplasia. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432245 Series Accession: GSE109892 ID: 200109892 2801. Clinical and genomic crosstalk between glucocorticoid receptor and estrogen receptor α in endometrial cancer [ChIP-seq] (Submitter supplied) Steroid hormone receptors are simultaneously active in many tissues and capable of altering each other's function. Estrogen receptor ɑ (ER) and glucocorticoid receptor (GR) are expressed in the uterus and their ligands have opposing effects on uterine growth. In endometrial tumors expressing high levels of ER, we surprisingly found that expression of GR is associated with poor prognosis. Dexamethasone reduced normal uterine growth in vivo; however, this growth inhibition was abolished in estrogen-induced endometrial hyperplasia. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 11 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432244 Series Accession: GSE109891 ID: 200109891 2802. Clinical and genomic crosstalk between glucocorticoid receptor and estrogen receptor α in endometrial cancer [ATAC-seq] (Submitter supplied) Steroid hormone receptors are simultaneously active in many tissues and capable of altering each other's function. Estrogen receptor ɑ (ER) and glucocorticoid receptor (GR) are expressed in the uterus and their ligands have opposing effects on uterine growth. In endometrial tumors expressing high levels of ER, we surprisingly found that expression of GR is associated with poor prognosis. Dexamethasone reduced normal uterine growth in vivo; however, this growth inhibition was abolished in estrogen-induced endometrial hyperplasia. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA432246 Series Accession: GSE109890 ID: 200109890 2803. Nanostring of sorted lung conventional dendritic cells (cDCs) from cell-specific MyD88 KO at 6h after in vivo sensitization with OVA/standard flagellin (Submitter supplied) Allergic asthma is a chronic disease of the airways characterized by eosinophilic and neutrophilic inflammation. MYD88, the adaptor molecule for TLR and IL-1 family member signaling, is required for allergic sensitization through the airway in animal models of allergic asthma. We generated conditionally mutant mice separately lacking Myd88 in airway epithelial cells (ECs) or dendritic cells (DCs) to define the contribution of Myd88 expression in each of these cell types. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL19964 14 Samples FTP download: GEO (RCC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79614/ Series Accession: GSE79614 ID: 200079614 2804. Nanostring of whole lung RNA from cell-specific MyD88 KO at 0h, 2h and 6h after in vivo sensitization with OVA/standard flagellin (Submitter supplied) Allergic asthma is a chronic disease of the airways characterized by eosinophilic and neutrophilic inflammation. MYD88, the adaptor molecule for TLR and IL-1 family member signaling, is required for allergic sensitization through the airway in animal models of allergic asthma. We generated conditionally mutant mice separately lacking Myd88 in airway epithelial cells (ECs) or dendritic cells (DCs) and alveolar macrophages (AMs) to define the contribution of Myd88 expression in each of these cell types. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL19964 35 Samples FTP download: GEO (RCC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79594/ Series Accession: GSE79594 ID: 200079594 2805. Nanostring of sorted lung alveolar macrophages (AM) from cell-specific MyD88 KO at 6h after in vivo sensitization with OVA/standard flagellin (Submitter supplied) Allergic asthma is a chronic disease of the airways characterized by eosinophilic and neutrophilic inflammation. MYD88, the adaptor molecule for TLR and IL-1 family member signaling, is required for allergic sensitization through the airway in animal models of allergic asthma. We generated conditionally mutant mice separately lacking Myd88 in airway epithelial cells (ECs) or dendritic cells (DCs) and alveolar macrophages (AMs) to define the contribution of Myd88 expression in each of these cell types. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL19964 8 Samples FTP download: GEO (RCC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79592/ Series Accession: GSE79592 ID: 200079592 2806. Nanostring of sorted airway epithelial cells (AECs) from cell-specific MyD88 KO at 2h after in vivo sensitization with OVA/standard flagellin (Submitter supplied) Allergic asthma is a chronic disease of the airways characterized by eosinophilic and neutrophilic inflammation. MYD88, the adaptor molecule for TLR and IL-1 family member signaling, is required for allergic sensitization through the airway in animal models of allergic asthma. We generated conditionally mutant mice separately lacking Myd88 in airway epithelial cells (ECs) or dendritic cells (DCs) and alveolar macrophages (AMs) to define the contribution of Myd88 expression in each of these cell types. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL19964 11 Samples FTP download: GEO (RCC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79591/ Series Accession: GSE79591 ID: 200079591 2807. Array of sorted lung conventional dendritic cells (cDCs) from cell-specific MyD88 KO at 0h and 6h in vivo sensitization with OVA/standard flagellin (Submitter supplied) Allergic asthma is a chronic disease of the airways characterized by eosinophilic and neutrophilic inflammation. MYD88, the adaptor molecule for TLR and IL-1 family member signaling, is required for allergic sensitization through the airway in animal models of allergic asthma. We generated conditionally mutant mice separately lacking Myd88 in airway epithelial cells (ECs) or dendritic cells (DCs) to define the contribution of Myd88 expression in each of these cell types. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL20775 16 Samples FTP download: GEO (CEL, CHP) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79581/ Series Accession: GSE79581 ID: 200079581 2808. ATAC-seq of sorted lung cDCs (conventional dendritic cells) from cell-specific MyD88 KO at 0h and 6h in vivo sensitization with OVA/standard flagellin (Submitter supplied) Allergic asthma is a chronic disease of the airways characterized by eosinophilic and neutrophilic inflammation. MYD88, the adaptor molecule for TLR and IL-1 family member signaling, is required for allergic sensitization through the airway in animal models of allergic asthma. We generated conditionally mutant mice separately lacking Myd88 in airway epithelial cells (ECs) or dendritic cells (DCs) to define the contribution of Myd88 expression in each of these cell types. more... Organism: Mus musculus Type: Other Platform: GPL19057 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79062/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA314845 Series Accession: GSE79062 ID: 200079062 2809. ATAC-seq of HFF exposed to salt and heat stress (Submitter supplied) Primary human foreskin fibroblasts (HFF) were exposed to either salt stress (80mM KCl) or heat stress (44ºC). ATAC-seq libraries were prepared starting with 50,000 cells per condition following the protocol described by Buenrostro et al., Nature Methods 2013 Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395312 Series Accession: GSE101731 ID: 200101731 2810. ATAC-seq on HSV-1 infected primary human fibroblasts (time course) (Submitter supplied) Primary human foreskin fibroblasts (HFF) were infected with wild-type simplex virus 1 (HSV-1) strain 17 at a multiplicity of infection (MOI) of 10. ATAC-seq libraries were prepared starting with 50,000 cells per condition following the protocol described by Buenrostro et al., Nature Methods 2013 Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392299 Series Accession: GSE100611 ID: 200100611 2811. Assay for Transposase-Accessible Chromatin of ATRA treated and wild type HL-60 cell line [ATAC-seq] (Submitter supplied) These ATAC-seq data were generated to correlate with genomic interaction data in a related Hi-C analysis. Analysis of ATAC-seq data revealed series of overlapping or specific open chromatin peaks in ATRA treated and control cells. Those specific peaks showed fewer overlapping with gene promoters than the overlapping peaks. Key transcription factor for blood cell differentiation GATA2 was found only bind in control specific peaks. Organism: Homo sapiens Type: Other Platform: GPL11154 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA363023 Series Accession: GSE93993 ID: 200093993 2812. Profiling of chromatin accessibility by ATAC-seq in hematopoietic LSK cells and leukemic stem cells of AML (Submitter supplied) Epigenetic changes in cancerous cells including alterations in histone methylation facilitate the installation of growth-promoting signaling networks by altering DNA accessibility to transcriptional machinery. The oncofusion protein MLL-AF9 promotes deviant histone methylation and induces acute myelogenous leukemia (AML) in animals. Despite observations supporting a role for WNT signaling in AML pathogenesis, we have a limited mechanistic account of how cancerous growth is sustained in this context. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA436442 Series Accession: GSE111277 ID: 200111277 2813. Transcriptional profiling of leukemic stem cells of AML with Wls WT or KO background (Submitter supplied) Epigenetic changes in cancerous cells including alterations in histone methylation facilitate the installation of growth-promoting signaling networks by altering DNA accessibility to transcriptional machinery. The oncofusion protein MLL-AF9 promotes deviant histone methylation and induces acute myelogenous leukemia (AML) in animals. Despite observations supporting a role for WNT signaling in AML pathogenesis, we have a limited mechanistic account of how cancerous growth is sustained in this context. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL6885 2 Samples FTP download: GEO (IDAT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111276/ Series Accession: GSE111276 ID: 200111276 2814. Transcriptional profiling of leukemic stem cells of AML treated with Wnt inhibitors in vivo (Submitter supplied) Epigenetic changes in cancerous cells including alterations in histone methylation facilitate the installation of growth-promoting signaling networks by altering DNA accessibility to transcriptional machinery. The oncofusion protein MLL-AF9 promotes deviant histone methylation and induces acute myelogenous leukemia (AML) in animals. Despite observations supporting a role for WNT signaling in AML pathogenesis, we have a limited mechanistic account of how cancerous growth is sustained in this context. more... Organism: Mus musculus Type: Expression profiling by array Platform: GPL6885 3 Samples FTP download: GEO (IDAT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111275/ Series Accession: GSE111275 ID: 200111275 2815. A widespread decrease of chromatin accessibility in age-related macular degeneration (Submitter supplied) Age-related macular degeneration (AMD) is a leading cause of blindness in the elderly. The extent to which epigenetic changes regulate the progression of AMD is unclear. Here we profiled chromatin accessibility in the retina and retinal pigmented epithelium (RPE) from AMD patients and controls. Global decreases in chromatin accessibility occur in the RPE in early AMD and in the retina with advanced disease. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL15520 GPL16791 58 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388006 Series Accession: GSE99287 ID: 200099287 2816. ATAC-seq of naive and three effector OT-I cell subsets from mice infected with Listeria monocytogenes (Submitter supplied) Purpose: ATAC-seq analysis of naive and three effector OT-I cell subsets (from a Klrg1-Cre fate reporter mouse model) isolated from the spleen of C57BL/6 mice 0 and 8 days post infection with OVA-expressing Listeria monocytogenes. The hypothesis tested in the present study was that chromatin remodeling in KLRG1+ effector CD8 T lymphocytes promotes the differentiation into KLRG1- memory CD8 T lymphocytes that provide long-lasting immunity against infectious diseases and malignancies. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434725 Series Accession: GSE110876 ID: 200110876 2817. The SS18-SSX oncoprotein hijacks KDM2B-PRC1.1 to drive synovial sarcoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL11154 40 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108929/ Series Accession: GSE108929 ID: 200108929 2818. The SS18-SSX oncoprotein hijacks KDM2B-PRC1.1 to drive synovial sarcoma [ATAC-seq] (Submitter supplied) Gene fusions arising from chromosomal translocations are key oncogenic drivers in soft tissue sarcomas but little is known about how they exert their oncogenic effects. Our study explores the molecular mechanisms by which the SS18-SSX fusion oncoprotein subverts epigenetic mechanisms of gene regulation to drive synovial sarcoma. Using functional genomics, we identify KDM2B – a histone demethylase and core component of a non-canonical Polycomb Repressive Complex 1 (PRC1.1) – as selectively required for sustaining synovial sarcoma cell transformation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 3 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA429316 Series Accession: GSE108927 ID: 200108927 2819. The ARID1A tumor suppressor controls global transcription via pausing of RNA Polymerase II (Submitter supplied) We investigated the genomic consequences of the depletion of the SWI/SNF subumit ARID1A, in an ovarian cancer derived model. We produced genome wide data for nascent RNA (GRO-seq) and steady state RNA (total RNA-seq). Further, we used ChIP-seq to examine genome-wide distribution of ARID1A, as well as the changes in occupancy of RNAPII, H3K4me3 and H3K36me3. Finally we used ATAC-seq to investigate chromatin accessibility. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 37 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA413026 Series Accession: GSE104545 ID: 200104545 2820. Role of SWEF proteins in ABC differentiation (Submitter supplied) Age/autoimmune-associated B cells (ABCs) are a T-bet dependent B cell subset, which accumulates prematurely in autoimmune settings. The molecular pathways that regulate ABCs in autoimmunity are largely unknown. The SWEF proteins include SWAP-70 and DEF6, a newly identified SLE risk variant. SWEF-deficient mice (double knock-out=DKO) develop a lupus like syndrome, which is accompanied by a marked expansion of ABCs. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 17 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388585 Series Accession: GSE99480 ID: 200099480 2821. Analysis of chromatin accessibility in decidualizing human endometrial stromal cells (Submitter supplied) Spontaneous decidualization of the endometrium in response to progesterone signaling is confined to menstruating species, including humans and other higher primates. During this process, endometrial stromal cells (EnSCs) differentiate into specialized decidual cells that control embryo implantation. We subjected undifferentiated and decidualizing human EnSCs to Assay for Transposase Accessible Chromatin with sequencing (ATAC-seq) to map the underlying chromatin changes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 5 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA413636 Series Accession: GSE104720 ID: 200104720 2822. Biomodal role of H3.3 in safe-guarding and establishing cell identities during reprogramming [ATAC-Seq] (Submitter supplied) Determination of chromatin accessibility changes during cellular reprogramming using RNA-Seq Organism: Mus musculus Type: Other Platform: GPL13112 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388760 Series Accession: GSE99547 ID: 200099547 2823. Selective modulation of inflammatory Natural Killer (NK) cell phenotypes following histone H3K27 demethylase inhibition [ATAC-Seq and ChIP-Seq] (Submitter supplied) Natural Killer cells are innate lymphocytes, participate in immune surveillance and elimination of stressed or transformed cells and critically shape the inflammatory cytokine environment to interact with cells of the innate and adaptive immune system, including macrophages, dendritic and Tcells. By performing a focused compound library screening, further validated by knockdown approaches, we here identify Jumonji-type histone 3 lysine 27 (H3K27) demethylases as key regulators of cytokine production in various human NK cell subsets. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18573 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352874 Series Accession: GSE89668 ID: 200089668 2824. IL-10 signaling remodels adipose chromatin architecture to limit thermogenesis and energy expenditure [ChIP-Seq] (Submitter supplied) Signaling pathways that promote adipose tissue thermogenesis are well characterized, but the physiologic limiters of energy expenditure are largely unknown. Here we show that ablation of the anti-inflammatory cytokine IL-10 improves insulin sensitivity, protects against diet-induced obesity, and elicits the browning of white adipose tissue. Mechanistic studies define bone marrow cells as the source of the IL-10 signal and mature adipocytes as the target cell type mediating these effects. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 3 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE111nnn/GSE111208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA436164 Series Accession: GSE111208 ID: 200111208 2825. Designer epigenome modifiers enable robust and sustained gene silencing in clinically relevant human cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL20301 GPL11154 10 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108030/ Series Accession: GSE108030 ID: 200108030 2826. Designer epigenome modifiers enable robust and sustained gene silencing in clinically relevant human cells [ATAC-seq] (Submitter supplied) Targeted modulation of gene expression represents a valuable approach to understand the mechanisms governing gene regulation. In a therapeutic context, it can be exploited to selectively modify the aberrant expression of a disease-causing gene or to provide the target cells with a new function. Here, we have established a novel platform for achieving precision epigenome editing using designer epigenome modifiers (DEMs). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA422250 Series Accession: GSE108024 ID: 200108024 2827. Genome-wide analysis of the histone variant H3mm7 (Submitter supplied) We identified a histone H3.3 sub-variant, H3mm7, to be specifically expressed in skeletal muscle satellite cells. H3mm7 knockout mice demonstrated an essential role of H3mm7 in skeletal muscle regeneration. Chromatin analysis revealed that H3mm7 facilitates transcription by forming an open chromatin structure around promoter regions including those of myogenic genes. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18480 GPL16417 117 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104389/ Series Accession: GSE104389 ID: 200104389 2828. Genome-wide binding reveals intrinsic specificity and regulatory function of lineage-specifying bHLH transcription factors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 44 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97715/ Series Accession: GSE97715 ID: 200097715 2829. Genome-wide binding reveals intrinsic specificity and regulatory function of lineage-specifying bHLH transcription factors (ATAC-Seq). (Submitter supplied) Developmental mechanisms of lineage specification are crucial to tissue-specific gene regulation, and crucial lineage-specification factors are associated with developmental and oncogenic diseases. The mechanisms by which these factors regulate their distinct transcriptional profiles remains unclear. Comparison of their binding in a common context reveals that such specificity is intrinsic to these factors, and not simply a consequence of distinction in preference for, or availability of accessible chromatin at their respective binding sites. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA382711 Series Accession: GSE97714 ID: 200097714 2830. Id2-deficient NK cells acquire a naïve-like fate (ATAC-seq data set) (Submitter supplied) All innate lymphoid cells (ILC) constitutively express and require the small helix-loop-helix protein ID2 but the functions of ID2 are not well understood in these cells. Here we show that natural killer (NK) cells, the prototypic ILC, can develop in the absence of ID2 but lose their innate properties and remain as CD27+CD11b- cells that fail to mature into cytotoxic effectors. We show that ID2 broadly limited chromatin accessibility at E protein binding sites near T lymphocyte-associated genes including multiple chemokine receptors, cytokine receptors, and signaling molecules. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431289 Series Accession: GSE109517 ID: 200109517 2831. Identification of the impact of RB status on chromatin accessibility [ATAC-seq] (Submitter supplied) The retinoblastoma protein (RB) is preferentially lost in the progression to castrate resistant prostate cancer (CRPC). However, the alterations associated with such loss have been scantly described. Current findings have identified a novel E2F1 associated cistrome and transcriptome that is associated with RB loss in PCa. In order to determine the contribution of chromatin accessibility to alterations in E2F1 activity, ATAC-Seq was performed. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE105nnn/GSE105116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA414727 Series Accession: GSE105116 ID: 200105116 2832. Tcf-1 shapes the chromatin landscape of naive T cells (Submitter supplied) We investigate the requirement of the transcription factor Tcf-1 for T cell specific accessible elements and gene expression in developing T cells. We examine the impact of Tcf-1 on creating chromatin accessibility related to T cell identity in an unrelated, differentiated cell-type. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21626 321 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA387446 Series Accession: GSE99159 ID: 200099159 2833. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL17021 60 Samples FTP download: GEO (BEDGRAPH, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107242/ Series Accession: GSE107242 ID: 200107242 2834. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [Bisulfite-Seq-Cre] (Submitter supplied) EBF1 is essential for B cell specification and commitment. To explore the dynamics of EBF1 initiated B cell programming, we performed EBF1 ChIP-seq, ATAC-seq, bisulfite-seq, RNA-seq and several histone ChIP-seq analyses at different stages of the transition from Ebf1-/- pre-pro-B to pro-B triggered by EBF1 restoration. We also performed Pax5 ChIP-seq in Ebf1-/- pre-pro-B cell and EBF1-restored pro-B cell to study the pioneering function of EBF1 that allows other transcription factors to access certain chromatin sites. Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419401 Series Accession: GSE107241 ID: 200107241 2835. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [RNA-Seq-Cre] (Submitter supplied) EBF1 is essential for B cell specification and commitment. To explore the dynamics of EBF1 initiated B cell programming, we performed EBF1 ChIP-seq, ATAC-seq, bisulfite-seq, RNA-seq and several histone ChIP-seq analyses at different stages of the transition from Ebf1-/- pre-pro-B to pro-B triggered by EBF1 restoration. We also performed Pax5 ChIP-seq in Ebf1-/- pre-pro-B cell and EBF1-restored pro-B cell to study the pioneering function of EBF1 that allows other transcription factors to access certain chromatin sites. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419402 Series Accession: GSE107240 ID: 200107240 2836. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [Pax5-ChIP-Seq-Tet-On] (Submitter supplied) EBF1 is essential for B cell specification and commitment. To explore the dynamics of EBF1 initiated B cell programming, we performed EBF1 ChIP-seq, ATAC-seq, bisulfite-seq, RNA-seq and several histone ChIP-seq analyses at different stages of the transition from Ebf1-/- pre-pro-B to pro-B triggered by EBF1 restoration. We also performed Pax5 ChIP-seq in Ebf1-/- pre-pro-B cell and EBF1-restored pro-B cell to study the pioneering function of EBF1 that allows other transcription factors to access certain chromatin sites. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419397 Series Accession: GSE107239 ID: 200107239 2837. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [Histone-ChIP-Seq-Cre] (Submitter supplied) EBF1 is essential for B cell specification and commitment. To explore the dynamics of EBF1 initiated B cell programming, we performed EBF1 ChIP-seq, ATAC-seq, bisulfite-seq, RNA-seq and several histone ChIP-seq analyses at different stages of the transition from Ebf1-/- pre-pro-B to pro-B triggered by EBF1 restoration. We also performed Pax5 ChIP-seq in Ebf1-/- pre-pro-B cell and EBF1-restored pro-B cell to study the pioneering function of EBF1 that allows other transcription factors to access certain chromatin sites. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419398 Series Accession: GSE107238 ID: 200107238 2838. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [EBF1-ChIP-Seq-Tet-On] (Submitter supplied) EBF1 is essential for B cell specification and commitment. To explore the dynamics of EBF1 initiated B cell programming, we performed EBF1 ChIP-seq, ATAC-seq, bisulfite-seq, RNA-seq and several histone ChIP-seq analyses at different stages of the transition from Ebf1-/- pre-pro-B to pro-B triggered by EBF1 restoration. We also performed Pax5 ChIP-seq in Ebf1-/- pre-pro-B cell and EBF1-restored pro-B cell to study the pioneering function of EBF1 that allows other transcription factors to access certain chromatin sites. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419399 Series Accession: GSE107237 ID: 200107237 2839. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [EBF1-ChIP-Seq-Cre] (Submitter supplied) EBF1 is essential for B cell specification and commitment. To explore the dynamics of EBF1 initiated B cell programming, we performed EBF1 ChIP-seq, ATAC-seq, bisulfite-seq, RNA-seq and several histone ChIP-seq analyses at different stages of the transition from Ebf1-/- pre-pro-B to pro-B triggered by EBF1 restoration. We also performed Pax5 ChIP-seq in Ebf1-/- pre-pro-B cell and EBF1-restored pro-B cell to study the pioneering function of EBF1 that allows other transcription factors to access certain chromatin sites. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419400 Series Accession: GSE107236 ID: 200107236 2840. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [ATAC-Seq-Tet-On] (Submitter supplied) EBF1 is essential for B cell specification and commitment. To explore the dynamics of EBF1 initiated B cell programming, we performed EBF1 ChIP-seq, ATAC-seq, bisulfite-seq, RNA-seq and several histone ChIP-seq analyses at different stages of the transition from Ebf1-/- pre-pro-B to pro-B triggered by EBF1 restoration. We also performed Pax5 ChIP-seq in Ebf1-/- pre-pro-B cell and EBF1-restored pro-B cell to study the pioneering function of EBF1 that allows other transcription factors to access certain chromatin sites. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419395 Series Accession: GSE107235 ID: 200107235 2841. Dynamic EBF1 occupancy directs sequential epigenetic and transcriptional events in B cell programming [ATAC-Seq-Cre] (Submitter supplied) EBF1 is essential for B cell specification and commitment. To explore the dynamics of EBF1 initiated B cell programming, we performed EBF1 ChIP-seq, ATAC-seq, bisulfite-seq, RNA-seq and several histone ChIP-seq analyses at different stages of the transition from Ebf1-/- pre-pro-B to pro-B triggered by EBF1 restoration. We also performed Pax5 ChIP-seq in Ebf1-/- pre-pro-B cell and EBF1-restored pro-B cell to study the pioneering function of EBF1 that allows other transcription factors to access certain chromatin sites. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419396 Series Accession: GSE107234 ID: 200107234 2842. Identification of the tumour transition states occurring during EMT [p63 overexpression RNA-seq] (Submitter supplied) EMT in cancer has been associated with tumour stemness, metastasis and resistance to therapy. It has recently been proposed that, rather than being a binary process, EMT occurs through distinct intermediate states. However,direct in vivo evidence supporting this possibility is still lacking. By screening a large panel of cell surface markers, we identified the existence of multiple tumour subpopulations associated with different EMT stages from epithelial to completely mesenchymal states passing through intermediate hybrid states in skin and mammary primary tumours. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL18480 4 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434065 Series Accession: GSE110586 ID: 200110586 2843. Identification of the tumour transition states occurring during EMT [RNA-seq] (Submitter supplied) EMT in cancer has been associated with tumour stemness, metastasis and resistance to therapy. It has recently been proposed that, rather than being a binary process, EMT occurs through distinct intermediate states. However,direct in vivo evidence supporting this possibility is still lacking. By screening a large panel of cell surface markers, we identified the existence of multiple tumour subpopulations associated with different EMT stages from epithelial to completely mesenchymal states passing through intermediate hybrid states in skin and mammary primary tumours. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL18480 22 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434064 Series Accession: GSE110585 ID: 200110585 2844. Identification of the tumour transition states occurring during EMT [ATAC-seq] (Submitter supplied) EMT (epithelial-mesenchymal transition) in cancer has been associated with tumour stemness, metastasis and resistance to therapy. It has recently been proposed that, rather than being a binary process, EMT occurs through distinct intermediate states. However,direct in vivo evidence supporting this possibility is still lacking. By screening a large panel of cell surface markers, we identified the existence of multiple tumour subpopulations associated with different EMT stages from epithelial to completely mesenchymal states passing through intermediate hybrid states in skin and mammary primary tumours. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18480 5 Samples FTP download: GEO (BED, CSV, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA434063 Series Accession: GSE110584 ID: 200110584 2845. Regulatory Architecture of the LβT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone [single-cell RNA-Seq] (Submitter supplied) The LβT2 mouse pituitary cell line has many characteristics of a mature gonadotrope and is a widely used model system for studying developmental processes and the response to gonadotropin-releasing hormone (GnRH). The global epigenetic landscape, which contributes to cell-specific gene regulatory mechanisms, and the single-cell transcriptome response variation of LβT2 cells have not been previously investigated. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA397850 Series Accession: GSE102479 ID: 200102479 2846. Regulatory Architecture of the LβT2 Gonadotrope Cell Underlying the Response to Gonadotropin-Releasing Hormone [ATAC-Seq] (Submitter supplied) The LβT2 mouse pituitary cell line has many characteristics of a mature gonadotrope and is a widely used model system for studying developmental processes and the response to gonadotropin-releasing hormone (GnRH). The global epigenetic landscape, which contributes to cell-specific gene regulatory mechanisms, and the single-cell transcriptome response variation of LβT2 cells have not been previously investigated. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA397652 Series Accession: GSE102396 ID: 200102396 2847. Tissue- and strain-specific effects of a genotoxic carcinogen1,3-butadiene on chromatin and transcription (Submitter supplied) Epigenetic effects of environmental chemicals are under intense investigation to fill existing knowledge gaps between environmental/occupational exposures and adverse health outcomes. Chromatin accessibility is one prominent mechanism of epigenetic control of transcription, and understanding of the chemical effects on both could inform the causal role of epigenetic alterations in disease mechanisms. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 208 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA429358 Series Accession: GSE108990 ID: 200108990 2848. Reprogramming of Schwann Cells by LATS1/2-TAZ/YAP Signaling Drives Malignant Peripheral Nerve Sheath Tumorigenesis (Submitter supplied) Malignant peripheral nerve sheath tumors (MPNSTs) are highly aggressive Schwann cell (SC)-lineage derived sarcomas with poor prognosis. The molecular events underlying SC lineage cells-to-MPNST transformation remain elusive. Here, we show that human MPNSTs exhibit elevated HIPPO-TAZ/YAP expression, and that TAZ/YAP hyperactivity in SCs caused by Lats1/2 loss potently induces high-grade nerve-associated tumors with full penetrance. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 16 Samples FTP download: GEO (FPKM_TRACKING, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA387055 Series Accession: GSE99040 ID: 200099040 2849. The IL-4/STAT6/PPARγ signaling axis is driving the extension of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17021 54 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110465/ Series Accession: GSE110465 ID: 200110465 2850. The transcription factor c-Maf is a positive regulator of IL-10 with context-specific roles in CD4+ T cell effector function and in vivo consequences [ATAC-seq] (Submitter supplied) CD4+ T cells differentiate into distinct subsets which produce unique patterns of cytokines to eradicate pathogens, alongside IL-10 which controls immune pathology. How Il10 expression is regulated alongside the subset-specific cytokines is unclear. Using transcriptional and epigenomic profiling of CD4+ T cells from TH1 (malaria), TH2 (allergy) and TH17 (autoimmunity) disease models, we show here that c-Maf, identified as the top candidate regulator of IL-10, directly induces IL-10 across all CD4+ T cell subsets, controlling pathology in TH1 and TH2-type responses. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 19 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416933 Series Accession: GSE106461 ID: 200106461 2851. Enhancer analysis of rat cardiac myocytes and fibroblasts reveals a collaborative control by transcription factor families [ATAC-Seq] (Submitter supplied) We used a differential open chromatin approach, coupled with active enhancer mark ,transcriptomic and computational TFs binding analysis to map cell-type-specific active enhancers in cardiac fibroblasts and cardiomyocytes, and outline the TFs that control them. We identified Tead, Sox9, Smad, Tcf, Meis, Rbpj, and Runx1 as the main cardiac fibroblasts TF groups. Our analysis shows that in cardiomyocytes and cardiac fibroblasts, distal enhancers, containing concentrated combinatorial clusters of multiple tissue expressed TFs recognition motifs, are combinatorically clustered around tissue specific genes. Organism: Rattus norvegicus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18694 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA398103 Series Accession: GSE102529 ID: 200102529 2852. A novel CD4 T cell population expanded in SLE blood provides B cell help through IL10 and succinate [ATAC-seq] (Submitter supplied) ATAC-seq analysis of CD4 T cell populations obtained in blood of systemic lupus erythematosus (SLE) patients. The overall goal of this study was to determine chromatin accessibility profiles in Tfh cells and CXCR3+ PD1hi CD4+ T cells obtained from blood of SLE donors. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE110nnn/GSE110017/ Series Accession: GSE110017 ID: 200110017 2853. Chromatin accessibility of GIST48, GIST882 and GIST-T1 cells with ETV1 or FOXF1 knockdown (Submitter supplied) ATAC profiles were generated by deep sequencing using Illumina HiSeq. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 9 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417537 Series Accession: GSE106623 ID: 200106623 2854. SALP, a new NGS library construction method especially useful for the high-throughput characterization of chromatin openness states (Submitter supplied) Background: Next-generation sequencing (NGS) is fundamental to the current biological and biomedical research. Construction of sequencing library is a key step of NGS. Therefore, various library construction methods have been explored. However, the current methods are still limited by some shortcomings. Results: This study developed a new NGS library construction method, Single strand Adaptor Library Preparation (SALP), by using a novel single strand adaptor (SSA). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20795 11 Samples FTP download: GEO (BIGWIG, BW, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA411840 Series Accession: GSE104162 ID: 200104162 2855. Interplay between genome topology and gene regulation during somatic cell reprogramming [ATAC-seq] (Submitter supplied) Studies of genome topology, chromatin state and transcriptome dynamics during highly-efficient somatic cell reprogramming Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379000 Series Accession: GSE96554 ID: 200096554 2856. Enhancer invasion shapes MYCN dependent transcriptional amplification in neuroblastoma [ATAC-seq] (Submitter supplied) In neuroblastoma, amplification of the oncogenic basic helix-loop-helix (bHLH) transcription factor (TF) MYCN is the defining prognosticator of high-risk disease, occurs in one-third of neuroblastoma, and drastically reduces overall survival rates1,2. As a proto-oncogene, targeted MYCN overexpression in peripheral neural crest is sufficient to initiate disease in mouse models3. In MYCN amplified neuroblastoma, elevated expression of the factor is crucial to maintain tumor stemness4,5 and is associated with increased proliferation and aberrant cell cycle progression, as these tumors lack the ability to arrest in G1 in response to irradiation6-9. more... Organism: Homo sapiens Type: Other Platform: GPL18573 5 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE80nnn/GSE80152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA318043 Series Accession: GSE80152 ID: 200080152 2857. Genetic determinants and epigenetic effects of pioneer factor binding [ChIP-seq 2] (Submitter supplied) Transcription factors (TFs) are the core drivers of gene regulatory networks that control developmental transitions and a complete understanding of how they access, alter and maintain specific gene expression patterns remains an important goal. To begin a systematic dissection of the molecular components that either enable or constrain TF activity, we investigated the genomic occupancy of two distinct TFs, the pioneer factor FOXA2 and the pluripotency-associated factor OCT4 (POU5F1), in both endogenous and ectopic settings. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 9 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA357687 Series Accession: GSE92491 ID: 200092491 2858. Genetic determinants and epigenetic effects of pioneer factor binding [ATAC-seq 2] (Submitter supplied) Transcription factors (TFs) are the core drivers of gene regulatory networks that control developmental transitions and a complete understanding of how they access, alter and maintain specific gene expression patterns remains an important goal. To begin a systematic dissection of the molecular components that either enable or constrain TF activity, we investigated the genomic occupancy of two distinct TFs, the pioneer factor FOXA2 and the pluripotency-associated factor OCT4 (POU5F1), in both endogenous and ectopic settings. more... Organism: Homo sapiens Type: Other Platform: GPL16791 5 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA357688 Series Accession: GSE92490 ID: 200092490 2859. Genetic determinants and epigenetic effects of pioneer factor binding [ChIP-seq] (Submitter supplied) Transcription factors (TFs) are the core drivers of gene regulatory networks that control developmental transitions and a complete understanding of how they access, alter and maintain specific gene expression patterns remains an important goal. To begin a systematic dissection of the molecular components that either enable or constrain TF activity, we investigated the genomic occupancy of two distinct TFs, the pioneer factor FOXA2 and the pluripotency-associated factor OCT4 (POU5F1), in both endogenous and ectopic settings. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Third-party reanalysis Platform: GPL16791 44 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354651 Series Accession: GSE90454 ID: 200090454 2860. Genetic determinants and epigenetic effects of pioneer factor binding [ATAC-seq] (Submitter supplied) Transcription factors (TFs) are the core drivers of gene regulatory networks that control developmental transitions and a complete understanding of how they access, alter and maintain specific gene expression patterns remains an important goal. To begin a systematic dissection of the molecular components that either enable or constrain TF activity, we investigated the genomic occupancy of two distinct TFs, the pioneer factor FOXA2 and the pluripotency-associated factor OCT4 (POU5F1), in both endogenous and ectopic settings. more... Organism: Homo sapiens Type: Other; Third-party reanalysis Platforms: GPL15520 GPL16791 10 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354649 Series Accession: GSE90453 ID: 200090453 2861. Enhancer invasion shapes MYCN dependent transcriptional amplification in neuroblastoma (Submitter supplied) Amplification of the locus encoding the oncogenic transcription factor MYCN is a defining feature of high-risk neuroblastoma. Here we present the first dynamic chromatin and transcriptional landscape of MYCN perturbation in neuroblastoma. At oncogenic levels, MYCN associates with E-box binding motifs in an affinity-dependent manner, binding to strong canonical E-boxes at promoters and invading abundant weaker non-canonical E-boxes clustered at enhancers. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing 4 related Platforms 144 Samples FTP download: GEO (BEDGRAPH, CEL, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE80nnn/GSE80154/ Series Accession: GSE80154 ID: 200080154 2862. IL-10 signaling remodels adipose chromatin architecture to limit thermogenesis and energy expenditure [RNA-Seq] (Submitter supplied) Signaling pathways that promote adipose tissue thermogenesis are well characterized, but the physiologic limiters of energy expenditure are largely unknown. Here we show that ablation of the anti-inflammatory cytokine IL-10 improves insulin sensitivity, protects against diet-induced obesity, and elicits the browning of white adipose tissue. Mechanistic studies define bone marrow cells as the source of the IL-10 signal and mature adipocytes as the target cell type mediating these effects. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platforms: GPL21103 GPL13112 11 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA371743 Series Accession: GSE94653 ID: 200094653 2863. IL-10 signaling remodels adipose chromatin architecture to limit thermogenesis and energy expenditure [ATAC-Seq] (Submitter supplied) Signaling pathways that promote adipose tissue thermogenesis are well characterized, but the physiologic limiters of energy expenditure are largely unknown. Here we show that ablation of the anti-inflammatory cytokine IL-10 improves insulin sensitivity, protects against diet-induced obesity, and elicits the browning of white adipose tissue. Mechanistic studies define bone marrow cells as the source of the IL-10 signal and mature adipocytes as the target cell type mediating these effects. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 9 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA371732 Series Accession: GSE94651 ID: 200094651 2864. Single-nucleus analysis of accessible chromatin in developing mouse forebrain reveals cell-type-specific transcriptional regulation (Submitter supplied) Analysis of chromatin accessibility can reveal transcriptional regulatory sequences, but heterogeneity of primary tissues poses a significant challenge in mapping the precise chromatin landscape in specific cell types. Here we report single-nucleus ATAC-seq, a combinatorial barcoding-assisted single-cell assay for transposase-accessible chromatin that is optimized for use on flash-frozen primary tissue samples. more... Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL21103 GPL22245 GPL17021 11 Samples FTP download: GEO (BW, MAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA390526 Series Accession: GSE100033 ID: 200100033 2865. HOXA9 cooperates with activated JAK/STAT signaling to drive leukemia development (Submitter supplied) Leukemia is caused by the accumulation of multiple genomic lesions in hematopoietic precursor cells. However, how these events cooperate during oncogenic transformation remains poorly understood. We studied the cooperation between activated JAK3/STAT5 signaling and HOXA9 overexpression, two events identified as significantly co-occuring in T-cell acute lymphoblastic leukemia. Expression of mutant JAK3 and HOXA9 led to a rapid development of leukemia originating from multipotent or lymphoid-committed progenitors, with a significant decrease in disease latency compared to JAK3 or HOXA9 alone. more... Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 32 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431601 Series Accession: GSE109653 ID: 200109653 2866. The chromatin remodeler Bptf activates a stemness gene-expression program essential for the maintenance of adult hematopoietic stem cells [ATAC-Seq] (Submitter supplied) Bptf, a component of NURF chromatin-remodeling complex, is essential for maintaining the pool size and function of hematopoietic stem cells (HSCs). Genome-wide transcriptome profiling revealed that Bptf loss caused down-regulation of HSC-specific gene-expression programs, which included master transcription factors (such as Meis1, Pbx1, and Lmo2) known to be required for HSC maintenance and self-renewal. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108439/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427310 Series Accession: GSE108439 ID: 200108439 2867. Genomic and epigenomic characterization of regenerating hepatocytes (Submitter supplied) To gain a deeper understanding of the genetic basis of liver repopulation after injury, we utilize an innovative technique to profile the expression changes and chromatin landscape during the regenerative response. We utilize the Fah-/- mouse, a model for hereditary tyrosinemia deficient in fumarylacetoacetate hydrolase (FAH), that undergoes repopulation with FAH-expressing hepatocytes. We employ translating ribosome affinity purification followed by RNA-sequencing (TRAP-seq) and assay for transposase accessible chromatin using sequencing (ATAC-seq) to specifically isolate regenerating hepatocytes and performed high-throughput sequencing to identify the dynamic genomic and epigenomic changes during liver repopulation. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 26 Samples FTP download: GEO (BIGWIG, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE109nnn/GSE109466/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA431154 Series Accession: GSE109466 ID: 200109466 2868. Mapping open chromatin in mouse nephron progenitor cells (Submitter supplied) To delineate the epigenomic profile of the Six2+ mouse nephron progenitor cells, we mapped open chromatin using ATAC-Seq in Six2+ cells from E16.5 mouse kidneys. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427367 Series Accession: GSE108424 ID: 200108424 2869. SLFN11 blocks stressed replication forks independently of ATR (Submitter supplied) SLFN11 sensitizes cancer cells to a broad range of DNA-targeted therapies. Here we show that, in response to replication stress induced by camptothecin, SLFN11 tightly binds chromatin at stressed replication foci via RPA1 together with the replication helicase subunit MCM3. Unlike ATR, SLFN11 neither interferes with the loading of CDC45 and PCNA nor inhibits the initiation of DNA replication but selectively blocks fork progression while inducing chromatin opening across replication initiation sites. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL10999 22 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101516/ Series Accession: GSE101516 ID: 200101516 2870. SLFN11 blocks stressed replication forks independently of ATR (Submitter supplied) SLFN11 sensitizes cancer cells to a broad range of DNA-targeted therapies. Here we show that, in response to replication stress induced by camptothecin, SLFN11 tightly binds chromatin at stressed replication foci via RPA1 together with the replication helicase subunit MCM3. Unlike ATR, SLFN11 neither interferes with the loading of CDC45 and PCNA nor inhibits the initiation of DNA replication but selectively blocks fork progression while inducing chromatin opening across replication initiation sites. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL10999 14 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394713 Series Accession: GSE101512 ID: 200101512 2871. Western diet triggers NLRP3-dependent persistent functional reprogramming of myeloid cells [ATAC-Seq] (Submitter supplied) Here we investigated whether sterile triggers of inflammation  induce trained immunity and thereby influence innate immune responses. Western diet (WD) feeding of Ldlr-/- mice induced systemic inflammation, which was undectable in serum soon after mice were shifted back to chow diet (CD). In contrast, myeloid cell responses towards innate stimuli remained broadly augmented. WD induced transcriptomic and epigenomic reprogramming of myeloid progenitor cells, leading to increased proliferation as well as enhanced innate immune and interferon responses towards in vivo LPS challenge. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 5 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383371 Series Accession: GSE97924 ID: 200097924 2872. Transcript-indexed ATAC-seq reveals paired single-cell T cell receptor identity and chromatin accessibility for precision immune profiling (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1360 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107817/ Series Accession: GSE107817 ID: 200107817 2873. Transcript-indexed ATAC-seq reveals paired single-cell T cell receptor identity and chromatin accessibility for precision immune profiling [single cell] (Submitter supplied) T cells create vast amounts of diversity in their T cell receptor (TCR) genes, enabling individual clones to recognize particular peptide-MHC ligands. Here we combine transposase accessible chromatin analysis and TCR sequencing (T-ATAC-seq) at the single-cell level. Using this approach, we identify epigenomic signatures in immortalized leukemic T cells, primary human T cells from healthy volunteers, and primary leukemic T cells from clinical patient samples. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1344 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA421486 Series Accession: GSE107816 ID: 200107816 2874. Transcript-indexed ATAC-seq reveals paired single-cell T cell receptor identity and chromatin accessibility for precision immune profiling [Ensembl] (Submitter supplied) T cells create vast amounts of diversity in their T cell receptor (TCR) genes, enabling individual clones to recognize particular peptide-MHC ligands. Here we combine transposase accessible chromatin analysis and TCR sequencing (T-ATAC-seq) at the single-cell level. Using this approach, we identify epigenomic signatures in immortalized leukemic T cells, primary human T cells from healthy volunteers, and primary leukemic T cells from clinical patient samples. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 16 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419362 Series Accession: GSE107223 ID: 200107223 2875. Temporal Layering of Signaling Effectors Drives Chromatin Remodeling during Hair Follicle Stem Cell Lineage Progression [ATAC-seq] (Submitter supplied) Tissue regeneration relies on resident stem cells (SCs), whose activity and lineage choices are influenced by microenvironment. Exploiting the synchronized, cyclical bouts of tissue regeneration in hair follicles (HFs), we investigate how microenvironment dynamics shape the emergence of SC lineages. Employing epigenetic and ChIP-seq profiling, we uncover how signal-dependent transcription factors couple spatio-temporal cues to chromatin dynamics, thereby choreographing SC lineages. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA393328 Series Accession: GSE100875 ID: 200100875 2876. Transcription factor-dependent ‘anti-repressive’ mammalian enhancers exclude H3K27me3 from extended genomic domains (Submitter supplied) To define and assess the role of transcription factor binding at villus enhancers, we performed ATAC-seq and ChIP-seq. We used RNA-sequencing to profile gene expression changes upon transcription factor loss. Loss of gene expression correlated with transcription factor-dependent enhancers and reveal the role of certain enhancers in H3K27me3 exclusion. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 47 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA386029 Series Accession: GSE98724 ID: 200098724 2877. Regulatory elements governing neurogenesis and proliferation in developing human neocortex (Submitter supplied) Non-coding regions compose most of the human genome, yet their functionality is poorly defined. In the developing human neocortex, non-coding regulatory elements tightly regulate expression to direct neural progenitor proliferation and neurogenesis. Here, we define thousands of non-coding elements involved in human neurogenesis by contrasting chromatin accessibility via ATAC-seq from the germinal zone and cortical plate. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 19 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95023/ Series Accession: GSE95023 ID: 200095023 2878. Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor. (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 16 Samples FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97055/ Series Accession: GSE97055 ID: 200097055 2879. Regeneration of the lung alveolus by an evolutionarily conserved epithelial progenitor [ATAC-seq] (Submitter supplied) The lung alveolus is the primary site of gas exchange in mammals. Within the alveolus, the alveolar type 2 (AT2) epithelial cell population generates surfactant to maintain alveolar structure and harbors a regenerative capacity to repair the alveolus after injury. We show that a Wnt-responsive alveolar epithelial progenitor (AEP) lineage within the AT2 cell population is critical for regenerating the alveolar niche. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380615 Series Accession: GSE97052 ID: 200097052 2880. Dynamic reorganization of nuclear architecture during human cardiogenesis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 36 Samples FTP download: GEO (BED, BEDGRAPH, BW, MATRIX, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106690/ Series Accession: GSE106690 ID: 200106690 2881. Dynamic reorganization of nuclear architecture during human cardiogenesis [ATAC-seq] (Submitter supplied) While chromosomal architecture varies among cell types, little is known about how this organization is established or its role in development. We integrated Hi-C, RNA-seq and ATAC-seq during cardiac differentiation from human pluripotent stem cells to generate a comprehensive profile of chromosomal architecture. We identified active and repressive domains that are dynamic during cardiogenesis and recapitulate in vivo cardiomyocytes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417684 Series Accession: GSE106689 ID: 200106689 2882. Dynamic reorganization of nuclear architecture during human cardiogenesis [RNA-seq] (Submitter supplied) While chromosomal architecture varies among cell types, little is known about how this organization is established or its role in development. We integrated Hi-C, RNA-seq and ATAC-seq during cardiac differentiation from human pluripotent stem cells to generate a comprehensive profile of chromosomal architecture. We identified active and repressive domains that are dynamic during cardiogenesis and recapitulate in vivo cardiomyocytes. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL18573 10 Samples FTP download: GEO (DIFF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417683 Series Accession: GSE106688 ID: 200106688 2883. Dynamic reorganization of nuclear architecture during human cardiogenesis [HiC-seq] (Submitter supplied) While chromosomal architecture varies among cell types, little is known about how this organization is established or its role in development. We integrated Hi-C, RNA-seq and ATAC-seq during cardiac differentiation from human pluripotent stem cells to generate a comprehensive profile of chromosomal architecture. We identified active and repressive domains that are dynamic during cardiogenesis and recapitulate in vivo cardiomyocytes. more... Organism: Homo sapiens Type: Other Platform: GPL18573 18 Samples FTP download: GEO (BED, BEDGRAPH, MATRIX, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA417685 Series Accession: GSE106687 ID: 200106687 2884. Kinetics and molecular hallmarks of the acquisition of developmental pluripotency during cellular reprogramming (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 24 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106334/ Series Accession: GSE106334 ID: 200106334 2885. Kinetics and molecular hallmarks of the acquisition of developmental pluripotency during cellular reprogramming [ATAC-Seq] (Submitter supplied) The ability of induced pluripotent stem cells (iPSCs) to differentiate into all adult cell types makes them attractive for basic research and regenerative medicine applications, but it remains unknown when and how this hallmark of the pluripotent state is established. Here, we pinpoint the acquisition of developmental pluripotency in a suitable reprogramming system and show that nascent iPSCs abruptly and without extensive maturation period in culture become capable of generating all tissues upon injection into preimplantation embryos. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106331/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416318 Series Accession: GSE106331 ID: 200106331 2886. INO80 Chromatin Remodelling Coordinates Metabolic Homeostasis with Cell Division (Submitter supplied) We performed RNA-seq across the yeast metabolic cycle (YMC) in wild-type and a strain lacking ARP5, a central component of the INO80 chromatin remodelling complex. We also perform ATAC-seq on the same samples to examine chromatin architecture across the YMC. Organism: Saccharomyces cerevisiae Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13821 GPL19756 51 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA393962 Series Accession: GSE101290 ID: 200101290 2887. The IL-4/STAT6/PPARγ signaling axis is driving the expansion of the RXR heterodimer cistrome, providing complex ligand responsiveness in macrophages II (Submitter supplied) Retinoid X receptor (RXR) is an obligate heterodimeric partner of several nuclear receptors (NRs), and as such a central component of NR signaling regulating the immune and metabolic phenotype of macrophages. Importantly, the binding motifs of RXR heterodimers are enriched in the tissue-selective open chromatin regions of resident macrophages, suggesting specific roles in subtype specification. Recent genome-wide studies revealed that RXR binds to thousands of sites in the genome, but the mechanistic details how the cistrome is established and serves ligand-induced transcriptional activity remained elusive. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 47 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA318630 Series Accession: GSE107456 ID: 200107456 2888. Hexavalent chromium disrupts chromatin organization and accessibility to CTCF sites in promoters of differentially expressed genes [MNase-Seq] (Submitter supplied) Hexavalent chromium compounds are well-established respiratory carcinogens utilized in industrial processes. While inhalation exposure constitutes an occupational risk affecting mostly chromium workers, environmental exposure from drinking water is a widespread gastrointestinal carcinogen, affecting millions of people throughout the world. Cr(VI) is genotoxic, by forming protein-Cr-DNA adducts and silencing tumor suppressor genes, but its mechanism of action at the molecular level is poorly understood. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL15103 4 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA413059 Series Accession: GSE104565 ID: 200104565 2889. Hexavalent chromium disrupts chromatin organization and accessibility to CTCF sites in promoters of differentially expressed genes [ChIP-seq] (Submitter supplied) Hexavalent chromium compounds are well-established respiratory carcinogens utilized in industrial processes. While inhalation exposure constitutes an occupational risk affecting mostly chromium workers, environmental exposure from drinking water is a widespread gastrointestinal carcinogen, affecting millions of people throughout the world. Cr(VI) is genotoxic, by forming protein-Cr-DNA adducts and silencing tumor suppressor genes, but its mechanism of action at the molecular level is poorly understood. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL15103 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA413060 Series Accession: GSE104564 ID: 200104564 2890. Hexavalent chromium disrupts chromatin organization and accessibility to CTCF sites in promoters of differentially expressed genes [ATAC-seq] (Submitter supplied) Hexavalent chromium compounds are well-established respiratory carcinogens utilized in industrial processes. While inhalation exposure constitutes an occupational risk affecting mostly chromium workers, environmental exposure from drinking water is a widespread gastrointestinal carcinogen, affecting millions of people throughout the world. Cr(VI) is genotoxic, by forming protein-Cr-DNA adducts and silencing tumor suppressor genes, but its mechanism of action at the molecular level is poorly understood. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL15103 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA413058 Series Accession: GSE104563 ID: 200104563 2891. EZH1 as a key epigenetic barrier to definitive haematopoiesis during embryonic development (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 58 Samples FTP download: GEO (BED, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89418/ Series Accession: GSE89418 ID: 200089418 2892. ATAC-seq analysis in 5F cells and AGM cells with EZH1 depletion (Submitter supplied) Blood develops in distinct stages. Haematopoietic progenitors in the embryo manifest restricted differentiation potential relative to definitive haematopoietic stem cells in adult bone marrow, which support lifelong multilineage haematopoiesis. To identify regulators of embryonic haematopoiesis, we screened chromatin modifiers and identified the Polycomb group protein EZH1 as a barrier to multilineage potential from pluripotent stem cells (PSCs). more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL18573 7 Samples FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352134 Series Accession: GSE89416 ID: 200089416 2893. Epigenomic analysis of Atrx deficiency in murine glioma cells of orgin [ATAC-seq] (Submitter supplied) The chromatin regulator ATRX is inactivated in large subsets of adult and pediatric glioma. Whether and how ATRX deficiency promotes oncogenesis by epigenomic dysregulation remains unclear. We found that Atrx loss, especially when coupled with Tp53 inactivation, promoted cell motility and modulated differentiation state in primary murine neuroepithelial progenitors, recapitulating characteristic disease phenotypes and molecular features. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391904 Series Accession: GSE100461 ID: 200100461 2894. B cell activation and plasma cell differentiation are inhibited by de novo DNA methylation (Submitter supplied) B cells provide humoral immunity by differentiating into antibody-secreting plasma cells, a process that requires cellular division and is linked to DNA hypomethylation. Conversely, little is known about how de novo deposition of DNA methylation affects B cell fate and function. Here we show that genetic deletion of the de novo DNA methyltransferases Dnmt3a and Dnmt3b (Dnmt3-deficient) in mouse B cells results in normal B cell development and maturation, but increased cell activation and expansion of the germinal center B cell and plasma cell populations upon immunization. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 53 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89471/ Series Accession: GSE89471 ID: 200089471 2895. B cell differentiation is limited by de novo DNA methylation [ATAC-seq] (Submitter supplied) B cells provide humoral immunity by differentiating into antibody-secreting plasma cells, a process that requires cell division and is linked to DNA hypomethylation and gene regulation. Conversely, accumulation of DNA methylation in B cell differentiation is less apparent. To determine the role of de novo DNA methylation in B cell differentiation, the de novo DNA methyltransferases, Dnmt3a and Dnmt3b, were deleted in B cells resulting in phenotypically normal B cell development in the bone marrow, spleen and lymph nodes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 17 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352272 Series Accession: GSE89470 ID: 200089470 2896. B cell differentiation is limited by de novo DNA methylation [RRBS] (Submitter supplied) B cells provide humoral immunity by differentiating into antibody-secreting plasma cells, a process that requires cell division and is linked to DNA hypomethylation and gene regulation. Conversely, accumulation of DNA methylation in B cell differentiation is less apparent. To determine the role of de novo DNA methylation in B cell differentiation, the de novo DNA methyltransferases, Dnmt3a and Dnmt3b, were deleted in B cells resulting in phenotypically normal B cell development in the bone marrow, spleen and lymph nodes. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL17021 18 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352268 Series Accession: GSE89467 ID: 200089467 2897. B cell differentiation is limited by de novo DNA methylation [RNA-seq] (Submitter supplied) B cells provide humoral immunity by differentiating into antibody-secreting plasma cells, a process that requires cell division and is linked to DNA hypomethylation and gene regulation. Conversely, accumulation of DNA methylation in B cell differentiation is less apparent. To determine the role of de novo DNA methylation in B cell differentiation, the de novo DNA methyltransferases, Dnmt3a and Dnmt3b, were deleted in B cells resulting in phenotypically normal B cell development in the bone marrow, spleen and lymph nodes. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 18 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352078 Series Accession: GSE89412 ID: 200089412 2898. Social status alters immune regulation and response to infection [PBMC_ATACseq] (Submitter supplied) Social status is one of the strongest predictors of disease risk and mortality in humans, and often influences Darwinian fitness in social mammals more generally. To understand the biological basis of these effects, we combined a functional genomics approach with sequential social status manipulations in rhesus macaques to investigate how social status alters immune function. We demonstrate causal, but largely plastic, effects of social status on immune cell proportions, cell type-specific gene expression levels, and the gene expression and cytokine response to infection. more... Organism: Macaca mulatta Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21120 3 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA325537 Series Accession: GSE83306 ID: 200083306 2899. Impact of regulatory variation across human iPSCs and differentiated cells [ATAC-seq LCL] (Submitter supplied) Induced pluripotent stem cells (iPSCs) are an essential tool for studying cellular differentiation and cell types that are otherwise difficult to access. We investigated the use of iPSCs and iPSC-derived cells to study the impact of genetic variation on gene regulation across different cell types and as models for studies of complex disease. To do so, we established a panel of iPSCs from 58 well-studied Yoruba lymphoblastoid cell lines (LCLs); 14 of these lines were further differentiated into cardiomyocytes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 20 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427321 Series Accession: GSE108460 ID: 200108460 2900. Impact of regulatory variation across human iPSCs and differentiated cells [ATAC-seq iPSC-CM] (Submitter supplied) Induced pluripotent stem cells (iPSCs) are an essential tool for studying cellular differentiation and cell types that are otherwise difficult to access. We investigated the use of iPSCs and iPSC-derived cells to study the impact of genetic variation on gene regulation across different cell types and as models for studies of complex disease. To do so, we established a panel of iPSCs from 58 well-studied Yoruba lymphoblastoid cell lines (LCLs); 14 of these lines were further differentiated into cardiomyocytes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 14 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427322 Series Accession: GSE108459 ID: 200108459 2901. Impact of regulatory variation across human iPSCs and differentiated cells [ATAC-seq iPSC] (Submitter supplied) Induced pluripotent stem cells (iPSCs) are an essential tool for studying cellular differentiation and cell types that are otherwise difficult to access. We investigated the use of iPSCs and iPSC-derived cells to study the impact of genetic variation on gene regulation across different cell types and as models for studies of complex disease. To do so, we established a panel of iPSCs from 58 well-studied Yoruba lymphoblastoid cell lines (LCLs); 14 of these lines were further differentiated into cardiomyocytes. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 57 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA427323 Series Accession: GSE108458 ID: 200108458 2902. c-MYC drives a subset of high-risk pediatric neuroblastomas and is activated through mechanisms including enhancer hijacking and focal enhancer amplification (ATAC-Seq) (Submitter supplied) Childhood neuroblastoma is known for MYCN gene amplification, and here we show that in a separate subset of cases MYC-itself is activated due to enhancer hijacking from chromosomal translocations or duplications, thus defining a unique subset of high-risk disease. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 3 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA401531 Series Accession: GSE101294 ID: 200101294 2903. IKZF2 is required for myeloid leukemic stem cells by driving self-renewal and inhibiting the myeloid differentiation program I (Submitter supplied) We report that IKZF2 is required for maintaining chromatin accessibility in leukemic stem cells in myeloid leukemia. RNA seq and ATAC-seq were performed to investigate the changes in chromatin accessibility of differentially expressed genes in leukemic stem cells when IKZF2 was absent. We found that IKZF2 maintains open accessibility in self-renewal transcription factor motifs such as HOXA9 sites whereas motifs of differentiation transcription factors including C/EBPs are kept closed. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA423273 Series Accession: GSE108367 ID: 200108367 2904. Regulation of natural killer cells during MCMV infection (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 167 Samples FTP download: GEO (BIGWIG, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106139/ Series Accession: GSE106139 ID: 200106139 2905. EZH2-dependent chromatin accessibility changes during B cell differentiation (Submitter supplied) To understand the role of EZH2 in B cell differentiation, EZH2 was inducibly deleted using tamoxifen and B cells stimulated to differentiate with LPS in vivo. After 3 days, EZH2-sufficient and EZH2-deficient naive B cells and plasmablasts were FACS isolated from the spleens and ATAC-seq was performed to identify the chromatin accessibility changes that are programmed by EZH2. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 11 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA400252 Series Accession: GSE103142 ID: 200103142 2906. ATAC-Seq of CD8+ T cell terminal effector and memory precursor subsets during LCMV infection (Submitter supplied) Tissue-resident memory CD8+ T cells (Trm) are positioned at common sites of pathogen exposure where they elicit rapid and robust protective immune responses. However, the molecular signals controlling Trm differentiation and homeostasis are not fully understood. Here we show that mouse Trm precursor cells represent a unique CD8+ T cell subset that is distinct from the precursors of circulating memory populations at the levels of gene expression and chromatin accessibility. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE108nnn/GSE108092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA422431 Series Accession: GSE108092 ID: 200108092 2907. ATAC-Seq of CD8+ T cell subsets during LCMV infection (Submitter supplied) Tissue-resident memory CD8+ T cells (Trm) are positioned at common sites of pathogen exposure where they elicit rapid and robust protective immune responses. However, the molecular signals controlling Trm differentiation and homeostasis are not fully understood. Here we show that mouse Trm precursor cells represent a unique CD8+ T cell subset that is distinct from the precursors of circulating memory populations at the levels of gene expression and chromatin accessibility. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419917 Series Accession: GSE107373 ID: 200107373 2908. ATAC-seq analysis of human CD8 T cells specific for the NS4B-214 epitope in the Yellow fever vaccine YFV-17D strain (Submitter supplied) ATAC-seq analysis of human CD8 T cells specific for the NS4B-214 epitope in the Yellow fever vaccine YFV-17D strain Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 31 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394987 Series Accession: GSE101609 ID: 200101609 2909. BCG reprogramming of hematopoietic stem cells generates protective innate immunity against tuberculosis (ATAC-Seq) (Submitter supplied) The dogma that adaptive immunity is the only arm of the immune response with memory capacity has been recently challenged by several studies demonstrating evidence for memory-like innate immune training. However, the underlying mechanisms and location for generating such innate memory responses in vivo remains unknown. Here we show that access of Bacillus Calmette­Guérin (BCG) to the bone marrow (BM) following intravenous immunization induced local hematopoietic stem cell (HSC) expansion and enhanced myelopoiesis at the expense of lymphopoiesis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 7 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA385679 Series Accession: GSE98597 ID: 200098597 2910. Arid1a promotes tumor initiation but restrains progression and metastasis in liver cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 62 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95541/ Series Accession: GSE95541 ID: 200095541 2911. Arid1a promotes tumor initiation but restrains progression and metastasis in liver cancer [ATAC-seq] (Submitter supplied) ARID1A is hypothesized to be one of the most common tumor suppressors in human cancer. However, the functional consequences of ARID1A gain and loss are not clear. We report that mice with complete liver-specific Arid1a deficiency were resistant to MYC induced liver carcinogenesis, indicating a requirement during tumor initiation. Mechanistically, Arid1a loss constrained tumor formation by reducing Cytochrome P450 expression, which in turn mitigated oxidative stress. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA377340 Series Accession: GSE95530 ID: 200095530 2912. ETV2 cooperates with SCL for timely gene activation during hemogenic endothelium specification [ATAC-Seq] (Submitter supplied) By performing ATAC sequencing in WT, Etv2KoiSCL and Etv2KOiETV2 ES cell derived day 4.75 endothelial cells, we report here ETV2 increases chromatin accessiblity at its binding sites. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA358000 Series Accession: GSE92534 ID: 200092534 2913. Chromatin Open/Close Logic in Cellular Reprogramming [ChIP-Seq] (Submitter supplied) The reprogramming of fibroblasts into pluripotent stem cells by Oct4, Sox2, Myc and Klf4 represents a unique system to understand the logic of cell fate decisions. The reprogramming process can be divided into initial, middle and maturation phases that are coupled to the ordered execution of multiple biological processes, of which one of the earliest is a mesenchymal to epithelial transition (MET). Yet, despite these critical insights, less is known about how the reprogramming factors alter the chromatin state to convert somatic cells back to pluripotent cells. Here we report the global chromatin accessibility dynamics as cells reprogram from a somatic to a pluripotent state as assessed by assay for transposase-accessible chromatin with sequencing (ATAC-seq). We show that chromatin changes during reprogramming are defined by a fast initial wave of chromatin changes from accessible/open to inaccessible/closed (OC), which is followed by a slower opening up of chromatin from closed to open (CO), and ends with a climactic wave of CO. The initial OC wave includes loci enriched with motifs for AP-1, TEAD, RUNX and ETS-family transcription factors. Consistently, over-expression of one of the AP-1-family members c-Jun, c-Fos and Fra1blocked reprogramming. c-Jun inhibits reprogramming by preventing OSK-driven OC and skewing the overall OC-CO dynamics. Paradoxically, we show that Sox2 and to a less extent Oct4 and Klf4 are CO-, not OC-, mediators , suggesting that they must first activate potent OC factors to remodel chromatin. Indeed, we show that Sap30, a component of the Sin3 complex8, functions as such an OC factor. Together, our results reveal the chromatin accessibility logic during reprogramming and identify Sap30 as one of the first responders that help silence somatic genes. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 20 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA385002 Series Accession: GSE98404 ID: 200098404 2914. Chromatin Open/Close Logic in Cellular Reprogramming [RNA-Seq] (Submitter supplied) The reprogramming of fibroblasts into pluripotent stem cells by Oct4, Sox2, Myc and Klf4 represents a unique system to understand the logic of cell fate decisions. The reprogramming process can be divided into initial, middle and maturation phases that are coupled to the ordered execution of multiple biological processes, of which one of the earliest is a mesenchymal to epithelial transition (MET). Yet, despite these critical insights, less is known about how the reprogramming factors alter the chromatin state to convert somatic cells back to pluripotent cells. Here we report the global chromatin accessibility dynamics as cells reprogram from a somatic to a pluripotent state as assessed by assay for transposase-accessible chromatin with sequencing (ATAC-seq). We show that chromatin changes during reprogramming are defined by a fast initial wave of chromatin changes from accessible/open to inaccessible/closed (OC), which is followed by a slower opening up of chromatin from closed to open (CO), and ends with a climactic wave of CO. The initial OC wave includes loci enriched with motifs for AP-1, TEAD, RUNX and ETS-family transcription factors. Consistently, over-expression of one of the AP-1-family members c-Jun, c-Fos and Fra1blocked reprogramming. c-Jun inhibits reprogramming by preventing OSK-driven OC and skewing the overall OC-CO dynamics. Paradoxically, we show that Sox2 and to a less extent Oct4 and Klf4 are CO-, not OC-, mediators , suggesting that they must first activate potent OC factors to remodel chromatin. Indeed, we show that Sap30, a component of the Sin3 complex8, functions as such an OC factor. Together, our results reveal the chromatin accessibility logic during reprogramming and identify Sap30 as one of the first responders that help silence somatic genes. Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 26 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA359483 Series Accession: GSE93027 ID: 200093027 2915. Chromatin Open/Close Logic in Cellular Reprogramming [ATAC-Seq] (Submitter supplied) The reprogramming of fibroblasts into pluripotent stem cells by Oct4, Sox2, Myc and Klf4 represents a unique system to understand the logic of cell fate decisions. The reprogramming process can be divided into initial, middle and maturation phases that are coupled to the ordered execution of multiple biological processes, of which one of the earliest is a mesenchymal to epithelial transition (MET). Yet, despite these critical insights, less is known about how the reprogramming factors alter the chromatin state to convert somatic cells back to pluripotent cells. Here we report the global chromatin accessibility dynamics as cells reprogram from a somatic to a pluripotent state as assessed by assay for transposase-accessible chromatin with sequencing (ATAC-seq). We show that chromatin changes during reprogramming are defined by a fast initial wave of chromatin changes from accessible/open to inaccessible/closed (OC), which is followed by a slower opening up of chromatin from closed to open (CO), and ends with a climactic wave of CO. The initial OC wave includes loci enriched with motifs for AP-1, TEAD, RUNX and ETS-family transcription factors. Consistently, over-expression of one of the AP-1-family members c-Jun, c-Fos and Fra1blocked reprogramming. c-Jun inhibits reprogramming by preventing OSK-driven OC and skewing the overall OC-CO dynamics. Paradoxically, we show that Sox2 and to a less extent Oct4 and Klf4 are CO-, not OC-, mediators , suggesting that they must first activate potent OC factors to remodel chromatin. Indeed, we show that Sap30, a component of the Sin3 complex8, functions as such an OC factor. Together, our results reveal the chromatin accessibility logic during reprogramming and identify Sap30 as one of the first responders that help silence somatic genes. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 64 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA359484 Series Accession: GSE93026 ID: 200093026 2916. Xist-mediate chromatin inaccessibility requires B repeat (Submitter supplied) The noncoding Xist RNA could mediate chromosome inaccessiblity, especially for the pre-open chromatin regions (enhancer, promoter, CTCF). However, Xist lacking the B-repeats loss the ability of closing the chromatin accessibility. ATAC-seq is consistent with the observation by ATAC-see. XR-PID denotes the Xist RNA polycomb interacting domain, including the entire B-repeats and part of C repeats. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA399090 Series Accession: GSE102848 ID: 200102848 2917. Transcription Pausing Regulates Mouse Embryonic Stem Cell Differentiation [ATAC-seq] (Submitter supplied) The pluripotency of embryonic stem cells (ESCs) relies on appropriate responsiveness to developmental cues. Promoter-proximal pausing of RNA polymerase II (Pol II) has been suggested to play a role in keeping genes poised for future activation. To identify the role of Pol II pausing in regulating ESC pluripotency, we have generated mouse ESCs carrying a mutation in the pause-inducing factor SPT5. Consistent with previous in vitro studies showing the pausing deficiency of this mutant SPT5, our genomic analysis reveals genome-wide reduction of paused Pol II in mutant mESCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA389551 Series Accession: GSE99746 ID: 200099746 2918. Rheostatic Chromatin Control of Promiscuous Transcription by Aire and Brg1 (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16570 GPL13112 28 Samples FTP download: GEO (CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102527/ Series Accession: GSE102527 ID: 200102527 2919. Rheostatic Chromatin Control of Promiscuous Transcription by Aire and Brg1 [ATAC-Seq] (Submitter supplied) Chromatin Accessibility Profiles of mTECs from Aire-/- and Brg1-/- mice and their littermate controls. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 16 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA397970 Series Accession: GSE102526 ID: 200102526 2920. Genome-wide maps of chromatin structure in wild-type and nanos mutant primordial germ cells in C. elegans (Submitter supplied) The Nanos family of RNA-binding proteins has been implicated in the specification of primordial germ cells (PGCs) in a wide range of metazoans, but the underlying mechanisms remain poorly understood. We have profiled the transcriptome of PGCs lacking the nanos homologues nos-1 and nos-2 in C. elegans using cell sorting and RNA-seq. nos-1nos-2 PGCs fail to silence hundreds of genes normally expressed in oocytes and somatic cells, a phenotype reminiscent of PGCs lacking the repressive PRC2 complex. more... Organism: Caenorhabditis elegans Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18245 4 Samples FTP download: GEO (BEDGRAPH, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392420 Series Accession: GSE100651 ID: 200100651 2921. Epigentic profiling of murine proximal and distal femoral growth plates at E15.5 of mouse gestation (Submitter supplied) GWAS have identified hundreds of loci associated with height.However, determining causal mechanisms is challenging, especially since height-relevant tissues such as the growth plate are difficult to study. To discover mechanisms by which height GWAS variants function, we performed epigenetic profiling of murine femoral growth plates. The profiled open chromatin regions recapitulate known chondrocyte and skeletal biology and are enriched at height GWAS loci, particularly near differentially expressed growth plate genes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392227 Series Accession: GSE100585 ID: 200100585 2922. Atac-seq of 2.5 hpf zebrafish embryos (Submitter supplied) Here we analyze the genome-wide accessability during zebrafish embryogenesis before zygotice genome activation 2.5 hours post fertilization Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20828 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391261 Series Accession: GSE100286 ID: 200100286 2923. Cohesin facilitates zygotic genome activation in Zebrafish (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL20828 GPL18413 GPL14875 61 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84602/ Series Accession: GSE84602 ID: 200084602 2924. An evaluation of the effects of CRISPR/cas9-mediated editing of the Dxz4 locus on regulation of the mouse inactive X chromosome in Patski cells [ATAC-seq] (Submitter supplied) The mammalian inactive X chromosome (Xi) condenses into a bipartite structure with two superdomains of frequent long-range contacts separated by a boundary or hinge region. Using in situ DNase Hi-C in mouse cells with deletions or inversions within the hinge, we show that the conserved repeat locus Dxz4 alone is sufficient to maintain the bipartite structure and that Dxz4 orientation controls the distribution of long-range contacts on the Xi. more... Organism: Mus musculus x Mus spretus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20213 4 Samples FTP download: GEO (BED, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA419574 Series Accession: GSE107290 ID: 200107290 2925. STAT4 and T-bet control follicular helper T cells development in viral infections [ATAC-seq] (Submitter supplied) Follicular helper T (Tfh) cells promote germinal center (GC) B cell survival and proliferation, and guide their differentiation and Ig isotype switching by delivering contact-dependent and soluble factors, including IL-21, IL-4, IL-9, and IFN-g. IL-21 and IFN-g are co-expressed by Tfh cells during acute and chronic infections, but transcriptional regulation of these cytokines in the GC is incompletely understood. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE105nnn/GSE105807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA415459 Series Accession: GSE105807 ID: 200105807 2926. Aryl Hydrocarbon Receptor Preferentially Marks and Promotes Gut Regulatory T Cells (Submitter supplied) Here, we generated mouse genetic models to ablate or activate Ahr expression specifically in Tregs. We showed that Ahr was expressed more abundantly by peripherally induced Treg (pTregs) in the gut than by Tregs in other lymphoid organs, and its expression was independent of microbiota. Ahr was important for Treg gut homing and function. Ahr inhibited pro-inflammatory cytokines produced by Tregs but was dispensable for Treg stability. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA415568 Series Accession: GSE106083 ID: 200106083 2927. Dynamic transcriptional control of macrophage miRNA signature via inflammation responsive enhancers revealed using a combination of next generation sequencing-based approaches (Submitter supplied) MicroRNAs are important components of the post-transcriptional fine-tuning of macrophage gene expression in physiological and pathological conditions. However, the mechanistic underpinnings and the cis-acting genomic factors of how macrophage polarizing signals induce miRNA expression changes are not well characterized. Therefore, we systematically evaluated the transcriptional basis underlying the inflammation-mediated regulation of macrophage microRNome using the combination of different next generation sequencing datasets. more... Organism: Mus musculus Type: Non-coding RNA profiling by high throughput sequencing; Other Platform: GPL17021 8 Samples FTP download: GEO (BEDGRAPH, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE107nnn/GSE107095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379555 Series Accession: GSE107095 ID: 200107095 2928. Histone exchange assay in loss of DOT1 (Submitter supplied) Strain background is Saccharomyces cerevisiae wzy42 histone mutant strain with pWZ403 Myc-HHT2-HHF2 plasmid and pGAL1/10 FLAG-HHT1-HHF1 integrated gene. Cells were grown in YP+2% raffinose until mid-log (OD600=0.5) and arrested with alpha factor. When most of Cells were in G1 phase, added galactose (final conc. 2%) and harvested cells after 1 hour. Fixed cells were harvested by centrifugation at 4 Celcius degrees and the cell pellets were washed by 15mL of pH7.5 TBS buffer per a conical tube. more... Organism: Saccharomyces cerevisiae Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17342 40 Samples FTP download: GEO (BIGWIG, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416910 Series Accession: GSE106450 ID: 200106450 2929. Harnessing BET inhibitor sensitivity reveals AMIGO2 as a melanoma survival gene. (Submitter supplied) We utilize the transcriptional effects of BETi in melanoma and identify AMIGO2 as a direct target gene essential for melanoma cell survival both in vitro and in vivo. We further map the enhancer landscape of NHM and melanooma and show that genes regulated by super enhancers are expressed in higher levels, exihibit higher sensitivity to BETi, and over expressed in melanoma relative to NHM. In melanoma, AMIGO2 is regulated by super enhancers, which upon BETi lose their BRD2/BRD4 enrichment, resulting in AMIGO2 silencing. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL18573 69 Samples FTP download: GEO (BW, DIFF, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA369853 Series Accession: GSE94488 ID: 200094488 2930. Epigenome-wide Effects of Vitamin-D on Bronchial Epithelial Cells using ATAC-Seq and RNA-seq (Submitter supplied) Vitamin D has been associated with viral respiratory infections, the main cause of severe asthma exacerbations in children. We used ATAC-Seq to evaluate the effect of vitamin D on chromatin accessibility in immortalized (BEAS-2B), normal (NHBEC), and asthma (AAEC) bronchial epithelial cells cultured and stimulated with calcitriol, poly I:C (to simulate viral infection), both, or sham (culture media), as well as the effect on gene expression. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA418319 Series Accession: GSE106885 ID: 200106885 2931. Characterization of transcriptional and epigenetic changes during mouse alternative macrophage polarization (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 141 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106706/ Series Accession: GSE106706 ID: 200106706 2932. Characterization of transcriptional and epigenetic changes during mouse alternative macrophage polarization [ATAC-Seq] (Submitter supplied) The molecular basis of signal-dependent transcriptional activation has been extensively studied in macrophage polarization, however our understanding remains limited regarding the molecular determinants of repression. Here we showed that IL-4-activated STAT6 transcription factor is required for the direct transcriptional repression of a large number of genes during mouse alternative macrophage polarization. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE106nnn/GSE106702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA416285 Series Accession: GSE106702 ID: 200106702 2933. Ancestral perinatal obesogen exposure results in a transgenerational thrifty phenotype in mice (Submitter supplied) Ancestral environmental exposures to non-mutagenic agents can exert effects in unexposed descendants, adding a layer of complexity to long-standing attempts to clarify the relationships between genotypic and phenotypic variations. Transgenerational inheritance of environmental exposures has significant implications for understanding disease etiology. The environmental obesogen hypothesis proposes that exposure to obesogenic chemicals can lead to increased adiposity, in vivo. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL19057 40 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE105nnn/GSE105051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA414476 Series Accession: GSE105051 ID: 200105051 2934. Breaking the Atoh1 autoregulatory loop in hair cells: the repression of Atoh1 by Neurogenin1 during ear development (Submitter supplied) The functional unit of the inner ear consists of hair cells (HCs) and neurons in the inner ear. Both genes are induced early in development, but Atoh1 expression is counteracted by Neurog1. As a result, HC development is prevented during neurogenesis. This work aimed at understanding the molecular basis of this interaction. Atoh1 regulation depends on a 3’Atoh1-enhancer that is the site for Atoh1 autoregulation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA398265 Series Accession: GSE102649 ID: 200102649 2935. ATAC sequencing of developing cone photoreceptors (Submitter supplied) We determined the accessible genome of postmitotic cone photoreceptors in the central region of the mouse retina on postnatal days P3, P6, and P10. At eachtimepoint we isolated GFP-labeled cells from three different Chrnb4-GFP mice (biological triplicates) using fluorescence-activated cell sorting. We then acquired reads of regions of accessible DNA of the sorted cones using ATAC sequencing. Our data set contained 9 samples. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 9 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA382181 Series Accession: GSE97535 ID: 200097535 2936. ATAC-seq profiling of open chromatin in Arabidopsis thaliana shoot apical meristem stem cells and leaf mesophyll cells. (Submitter supplied) Cell differentiation is driven by changes in transcription factor (TF) activity and subsequent alterations in transcription. To study this processes, differences in TF binding between cell types can be deduced by methods that probe chromatin accessibility. Here we use cell type-specific nuclei purification followed by the Assay for Transposase Accessible Chromatin (ATAC-seq) to delineate differences in chromatin accessibility and TF-to-TF regulatory networks between stem cells of the shoot apical meristem (SAM) and differentiated leaf mesophyll cells of Arabidopsis thaliana. more... Organism: Arabidopsis thaliana Type: Other Platform: GPL19580 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395982 Series Accession: GSE101940 ID: 200101940 2937. A general transcription co-factor, Smad3, potentiates master transcription factor mediated cell identity conversions [ATAC-seq] (Submitter supplied) We have identified that expression of constitutive active Smad3 (Smad3CA) significantly enhanced reprogramming by Oct4, Sox2, Klf4, c-Myc. To investigate how Smad3CA expression impacts on chromatin opening, we performed ATAC-seq on day 3 of reprogramming in the presence or absence of Smad3CA expression. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA336447 Series Accession: GSE85175 ID: 200085175 2938. A general transcription co-factor, Smad3, potentiates master transcription factor mediated cell identity conversions (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 105 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85178/ Series Accession: GSE85178 ID: 200085178 2939. Sequencing analysis of proliferative heterogeneity in squamous cell carcinomas (Submitter supplied) ChIP-seq, ATAC-seq and RNA-seq analyses were integrated to define direct, transcriptional Tgfβ targets in quiescent tumor propogating cells Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 19 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA301434 Series Accession: GSE74762 ID: 200074762 2940. ILC1 confer early host protection at initial sites of viral infection [ATAC-Seq] (Submitter supplied) We show that tissue-resident ILC1 serve a non-redundant early role in host immunity through rapid production of interferon (IFN)-γ following mouse cytomegalovirus (MCMV) infection. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE103nnn/GSE103900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA407445 Series Accession: GSE103900 ID: 200103900 2941. Spatially uniform establishment of chromatin accessibility in the early Drosophila embryo (Submitter supplied) As the Drosophila embryo transitions from the use of maternal RNAs to zygotic transcription, domains of “open” chromatin, with relatively low nucleosome density and specific histone marks, are established at promoters and enhancers involved in patterned embryonic transcription. However it remains unclear whether open chromatin is a product of activity - transcription at promoters and patterning transcription factor binding at enhancers - or whether it is established by independent mechanisms. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21306 7 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA414230 Series Accession: GSE104957 ID: 200104957 2942. Nudt21 controls cell fate by connecting alternative polyadenylation to chromatin signaling (Submitter supplied) Cell fate transitions involve rapid changes of gene expression patterns and global chromatin remodeling, yet the underlying regulatory pathways remain incompletely understood. Here, we used transcription-factor induced reprogramming of somatic cells into pluripotent cells to screen for novel regulators of cell fate change. We identified the RNA processing factor Nudt21, a component of the pre-mRNA cleavage and polyadenylation complex, as a potent barrier to reprogramming. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA412975 Series Accession: GSE104529 ID: 200104529 2943. Read-write integration by the IRF4 gene regulatory module dynamically controls T helper cell fate (Submitter supplied) Transcriptional regulation of cell fate decisions in the immune system endows cells with specialized function; an iterative process that adapts to the changing landscape of infections. As coordinators of the immune system, T helper cells of the CD4+ lineage possess the ability to differentiate into an array of functional cell states in order to guide the response towards antibody production via the formation of T follicular helper (Tfh) cells or inflammation by the generation of T effector (Teff) cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 29 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA357065 Series Accession: GSE92272 ID: 200092272 2944. Analysis of genome-wide accessibility following acute deletion of Ring1b in mouse embryonic stem cells [ATAC-seq] (Submitter supplied) Knockout of the PRC1 catalytic subunit Ring1b does not induce widespread accessibility increases at bivalent TSSs as measured by ATAC-seq. Instead, accessibility changes are enriched at enhancers. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE105nnn/GSE105799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA415436 Series Accession: GSE105799 ID: 200105799 2945. Effects of dominant-negative Smarca4 mutations on the DNA accessibility landscape [ATAC-seq] (Submitter supplied) We generated a library of Smarca4 variants with mutations in conserved regions of the N-terminal ATPase domain based on mutants observed in primary tumors and cancer cell lines. Heterozygous expression of Smarca4 ATPase mutants led to decreased accessibility at active enhancers in mouse embryonic stem cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 7 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA385199 Series Accession: GSE98486 ID: 200098486 2946. Dominant-negative SMARCA4 mutants alter the accessibility landscape of tissue-unrestricted enhancers (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 21 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98605/ Series Accession: GSE98605 ID: 200098605 2947. ATAC-seq analyses during spermatogenesis (Submitter supplied) To determine the dynamics of open chromatin at a genomic resolution during spermatogenesis, we performed ATAC-seq and detected genomic regions of accessible chromatin by Tn5 transposase during spermatogenesis. We analyzed four representative stages of spermatogenesis: Thy1+ undifferentiated spermatogonia, which contains spermatogonial stem cells and progenitor cells; c-Kit+ differentiating spermatogonia from P7 testes; purified pachytene spermatocytes (PS) undergoing meiosis; and postmeiotic round spermatids (RS) from adult testes Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 16 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA399533 Series Accession: GSE102954 ID: 200102954 2948. A class of GATA3 mutation reprograms the breast cancer transcriptional network through gain and loss of function (Submitter supplied) A pioneer transcription factor, GATA3, is one of the most frequently mutated genes in breast cancer, yet the impact of these mutations is largely unknown. We generated a GATA3 mutant cell line (T47D wt/R330fs) by CRISPR. Mutation of one allele of GATA3 led to loss of binding and decreased expression at a subset of genes, including Progesterone Receptor. At other loci, associated with epithelial to mesenchymal transition, gain of binding at a novel sequence motif correlated with increased gene expression. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL11154 96 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388581 Series Accession: GSE99479 ID: 200099479 2949. Genomic profiling of human spermatogonial stem cells [ATAC-Seq] (Submitter supplied) To better understand human spermatogonial stem cells (SSCs), we profiled their transciptome and epigenome, which revealed the mechanism how human SSCs regulates their self-renewal versus differentiation dermination, as well as how latent pluripotency is established in human SSCs. Remarkly, we discovered signaling pathways (e.g. LIF, BMP, WNT) that differentially regulated self-renewal vesus differentiation in SSCs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA357084 Series Accession: GSE92279 ID: 200092279 2950. Epigenetic mechanisms underlying maternal diabetes-associated risk of congenital heart disease (Submitter supplied) Maternal hyperglycemia increases the risk of CHD and is further sensitized by haploinsufficiency of Notch1 supporting a gene-environment interaction model. To gain insights into chromatin accessible status by which hyperglycemia affects molecular pathways regulating cardiac development, we performed ATAC-seq on embryonic AV cushion mesenchymal cells maintained in normal and high glucose. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE104nnn/GSE104520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA412907 Series Accession: GSE104520 ID: 200104520 2951. ARID1A and ARID1B loss in HCT116 and TOV21G cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL16791 GPL18573 74 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101975/ Series Accession: GSE101975 ID: 200101975 2952. ARID1A and ARID1B loss in TOV21G cells (Submitter supplied) ARID1A, a subunit of the SWI/SNF chromatin remodeling complex, is frequently mutated in cancer. Deficiency in its homolog ARID1B is synthetically lethal with ARID1A mutation. However, the functional relationship between these homologs has not been explored. Here we use ATAC-seq, genome-wide histone modification mapping, and expression analysis to examine colorectal cancer cells lacking one or both ARID proteins. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL18573 GPL16791 22 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101974/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA396050 Series Accession: GSE101974 ID: 200101974 2953. ARID1A and ARID1B loss in HCT116 cells (Submitter supplied) ARID1A, a subunit of the SWI/SNF chromatin remodeling complex, is frequently mutated in cancer. Deficiency in its homolog ARID1B is synthetically lethal with ARID1A mutation. However, the functional relationship between these homologs has not been explored. Here we use ATAC-seq, genome-wide histone modification mapping, and expression analysis to examine colorectal cancer cells lacking one or both ARID proteins. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL16791 GPL18573 52 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA396039 Series Accession: GSE101966 ID: 200101966 2954. Chromatin State and Binding of Lhx2 and Ebf in Olfactory Sensory Neurons (Submitter supplied) The monoallelic expression of olfactory receptor (OR) genes is governed by the formation of large domain of heterochromatin over OR clusters and by enhancer elements embedded within these heterochromatic domains. Here we show that OR enhancers are bound by Ebf and Lhx2 in mature olfactory sensory neurons (OSNs), and that in the same cell population these sites are flanked by a histone modification characteristic of active enhancers (H3K7ac) as well as modifications characteristic of heterochromatin (H3K9me3 and H3K79me3). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 38 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA361145 Series Accession: GSE93570 ID: 200093570 2955. Alpha TC1 and Beta-TC-6 genomic profiling uncovers both shared and distinct transcriptional regulatory features with their primary islet counterparts (Submitter supplied) Alpha TC1 (αTC1) and Beta-TC-6 (βTC6) mouse islet cell lines are cellular models of islet (dys)function and type 2 diabetes (T2D). However, genomic characteristics of these cells, and their similarities to primary islet alpha and beta cells, are undefined. Here, we report the epigenomic (ATAC-seq) and transcriptomic (RNA-seq) landscapes of αTC1 and βTC6 cells. Each cell type exhibits hallmarks of its primary islet cell counterpart including cell-specific expression of beta (e.g., Pdx1) and alpha (e.g., Arx) cell transcription factors (TFs), and enrichment of binding motifs for these TFs in αTC1/βTC6 cis-regulatory elements. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other Platform: GPL19057 25 Samples FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388786 Series Accession: GSE99954 ID: 200099954 2956. Rif1 Promotes a Repressive Chromatin State to Safeguard Against Endogenous Retrovirus Activation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL19057 22 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98256/ Series Accession: GSE98256 ID: 200098256 2957. Rif1 Promotes a Repressive Chromatin State to Safeguard Against Endogenous Retrovirus Activation [RNA-seq] (Submitter supplied) Transposable elements, including endogenous retroviruses (ERVs), constitute a large fraction of the mammalian genome. They are transcriptionally silenced during early development to protect genome integrity and aberrant transcription. However, the mechanisms that control their repression are not fully understood. To systematically study ERV repression, we carried out an RNAi screen in mouse embryonic stem cells (ESCs) and identified a list of novel regulators. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA384487 Series Accession: GSE98255 ID: 200098255 2958. Rif1 Promotes a Repressive Chromatin State to Safeguard Against Endogenous Retrovirus Activation [MeDIP-seq] (Submitter supplied) Transposable elements, including endogenous retroviruses (ERVs), constitute a large fraction of the mammalian genome. They are transcriptionally silenced during early development to protect genome integrity and aberrant transcription. However, the mechanisms that control their repression are not fully understood. To systematically study ERV repression, we carried out an RNAi screen in mouse embryonic stem cells (ESCs) and identified a list of novel regulators. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA384488 Series Accession: GSE98254 ID: 200098254 2959. Rif1 Promotes a Repressive Chromatin State to Safeguard Against Endogenous Retrovirus Activation [ChIP-seq] (Submitter supplied) Transposable elements, including endogenous retroviruses (ERVs), constitute a large fraction of the mammalian genome. They are transcriptionally silenced during early development to protect genome integrity and aberrant transcription. However, the mechanisms that control their repression are not fully understood. To systematically study ERV repression, we carried out an RNAi screen in mouse embryonic stem cells (ESCs) and identified a list of novel regulators. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA384441 Series Accession: GSE98253 ID: 200098253 2960. Rif1 Promotes a Repressive Chromatin State to Safeguard Against Endogenous Retrovirus Activation [ATAC-seq] (Submitter supplied) Transposable elements, including endogenous retroviruses (ERVs), constitute a large fraction of the mammalian genome. They are transcriptionally silenced during early development to protect genome integrity and aberrant transcription. However, the mechanisms that control their repression are not fully understood. To systematically study ERV repression, we carried out an RNAi screen in mouse embryonic stem cells (ESCs) and identified a list of novel regulators. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA384443 Series Accession: GSE98252 ID: 200098252 2961. ncRNA transcription-induced changes in nuclear architecture directs with high precision enhancer-promoter interaction (Submitter supplied) It is now well established that transcriptional enhancers dictate with high precision lineage-specific programs of gene expression. However, it has remained an enigma as to how distally located enhancers, while separated by vast genomic distances, selectively target their cognate promoters. To explore the mechanism that underpins this precision-directed targeting we have examined the nuclear architecture of a super-enhancer that regulates the expression of Bcl11b. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Methylation profiling by high throughput sequencing Platforms: GPL17021 GPL21103 80 Samples FTP download: GEO (BED, BEDGRAPH, TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA356446 Series Accession: GSE90958 ID: 200090958 2962. Integration of kinase and calcium signaling at the level of chromatin underlines inducible gene activation in T cells (Submitter supplied) Aim: to perform a genome-wide investigation of chromatin landscape and gene expression patterns downstream of calcium and kinase signaling in Jurkat T cells. Methods: PMA and ionomycin were used to activate the calcium and kinase signalling networks involved in T cell activation. Global gene expression was measured using RNA-seq, whilst ATAC-seq was used to probe chromatin landscape following 3 hours of stimulation with PMA, ionomycin or both. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 27 Samples FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA355577 Series Accession: GSE90718 ID: 200090718 2963. Epigenetic restriction of embryonic and extraembryonic lineages mirrors the somatic transition to cancer (ATAC-seq) (Submitter supplied) Concerted efforts over past decades have established a thorough understanding of the canonical somatic DNA methylation landscape as well as its systematic misregulation across most human cancers. However, the underlying mechanism that directs this genome-scale transformation remains elusive, with no clear model for its acquisition or understanding of its potential developmental utility. Here we present base pair resolution analysis of global remethylation from the hypomethylated state of the preimplantation embryo into the early epiblast and extraembryonic ectoderm. more... Organism: Mus musculus Type: Other Platform: GPL13112 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA328459 Series Accession: GSE84232 ID: 200084232 2964. Nup153 defines neural identity through cooperative transcriptional control with Sox2 (Submitter supplied) Through RNA interference and genome-wide Nup153 binding studies, we found that Nup153 and Sox2 bind and co-regulate hundreds of genes. Furthermore, we found that Nup153 exhibits binding location dependent spatially distinct transcriptional control by differentially regulating expression when bound to the promoter region or to the transcription end site (TES). These results establish Nup153 not only as a novel transcriptional co-regulator of Sox2 but also as a key player in the regulation of cell fate by directly modulating gene expression. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19057 GPL17021 28 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA389588 Series Accession: GSE99783 ID: 200099783 2965. Altered Hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways [MeDIP-seq] (Submitter supplied) Transcriptional deregulation of oncogenic pathways is a hallmark of cancer, and can be due to epigenetic alterations. 5-hydroxymethylcytosine is a recently discovered epigenetic modification that has not been studied in pancreatic cancer. Genome-wide analysis of 5-hmC enriched loci with hmC-seal was conducted in low-passage pancreatic cancer cell lines and primary patient-derived xenografts and revealed strikingly altered patterns in neoplastic tissues. more... Organism: Homo sapiens Type: Methylation profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380405 Series Accession: GSE97014 ID: 200097014 2966. Altered Hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways [ATAC-seq] (Submitter supplied) Transcriptional deregulation of oncogenic pathways is a hallmark of cancer, and can be due to epigenetic alterations. 5-hydroxymethylcytosine is a recently discovered epigenetic modification that has not been studied in pancreatic cancer. Genome-wide analysis of 5-hmC enriched loci with hmC-seal was conducted in low-passage pancreatic cancer cell lines and primary patient-derived xenografts and revealed strikingly altered patterns in neoplastic tissues. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380396 Series Accession: GSE97008 ID: 200097008 2967. Altered Hydroxymethylation is seen at regulatory regions in pancreatic cancer and regulates oncogenic pathways [RNA-seq] (Submitter supplied) Transcriptional deregulation of oncogenic pathways is a hallmark of cancer, and can be due to epigenetic alterations. 5-hydroxymethylcytosine is a recently discovered epigenetic modification that has not been studied in pancreatic cancer. Genome-wide analysis of 5-hmC enriched loci with hmC-seal was conducted in low-passage pancreatic cancer cell lines and primary patient-derived xenografts and revealed strikingly altered patterns in neoplastic tissues. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 11 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380392 Series Accession: GSE97003 ID: 200097003 2968. Concentration dependent binding states of the Bicoid Homeodomain Protein (Submitter supplied) We have measured by ChIP-seq the distribution of Bicoid protein in Wild Type embryos, and in embryos in which the sole source of Bicoid is expressed at single concentrations representative of individual positions along the morphogen gradient. In addition, we have measured chromatin accessibility and nucleosome positioning by ATAC seq in Wild Type, bicoid mutant, uniform bicoid, and zelda mutant embryos. Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17275 63 Samples FTP download: GEO (BEDGRAPH, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA343106 Series Accession: GSE86966 ID: 200086966 2969. Genome-wide mapping of nucleosome positioning in Toxoplasma gondii implicates nucleosome-free regions as the major gene regulatory regions (Submitter supplied) Nucleosome organization is critical for the regulation of gene expression, and genome-scale mapping of nucleosomes has revealed a conserved, highly ordered pattern in nucleosome positioning. Most genome-wide studies have been performed in model organisms and little is known about nucleosome positioning in evolutionarily divergent eukaryotes. We generated a high-resolution nucleosome map of the protozoan parasite Toxoplasma gondii from four high quality MNase-Seq datasets. more... Organism: Toxoplasma gondii Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16774 4 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA342418 Series Accession: GSE86620 ID: 200086620 2970. Analysis of non-methylated islands, sites of accessible chromatin and nascent transcriptome in C127 mouse cell line. [C127_BioCAP-ATAC-4sU] (Submitter supplied) Chromatin modifications and the promoter associated epigenome are thought to be important for the regulation of gene expression. However, the mechanisms by which chromatin modifying complexes are targeted to the appropriate gene promoters in vertebrates and how they influence gene expression have remained poorly defined. Here, using a combination of live cell imaging and functional genomics, we discover that the vertebrate SET1 complex is targeted to actively transcribed target gene promoters through CFP1 which engages in a unique form of multivalent chromatin reading that involves recognition of non-methylated DNA and histone H3 lysine 4 trimethylation (H3K4me3). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other Platforms: GPL19057 GPL13112 9 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA361190 Series Accession: GSE93427 ID: 200093427 2971. An inducible and reversible embryonic stem cell biobank reveals functional genomic pathways and disease targets [ATAC-Seq, ChIP-Seq] (Submitter supplied) Clonal cellular variance often confounds reproducibility of forward and reverse genetic studies. We developed combinatorial approaches for whole genome saturated mutagenesis using haploid murine ES cells to permit induction and reversion of genetic mutations. Using these systems, we created a biobank with over 100000 individual ES cell lines with repairable and genetically bar coded mutations targeting 16950 genes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 7 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA328011 Series Accession: GSE84089 ID: 200084089 2972. 3D genome landscape of Epstein-Barr Virus oncoproteins and virus activated NF-kB in lymphoblastoid cells (Submitter supplied) Epstein-Barr Virus (EBV) encoded Nuclear Antigens (EBNAs) and virus activated NF-kB subunits mostly bind to enhancers in EBV transformed lymphoblastoid cells lines (LCLs). Using LCL 3D genome organization map that links EBV enhancers to promoters, we built the most comprehensive virus regulome. EBV regulome contained 1992 genes and enhancers directly linked to them. ~30% of genes essential for LCL growth were linked to EBV enhancers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394174 Series Accession: GSE101426 ID: 200101426 2973. ATAC-seq analysis of the chromatin landscape during in vitro differentiation of murine trophoblast stem cells (Submitter supplied) Our goal was to survey changes in chromatin accessibility during early trophoblast differentiation and assess its releationship with transcriptional changes. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 4 Samples FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA371831 Series Accession: GSE94694 ID: 200094694 2974. 5-hydroxymethylcytosine Accumulation in Postmitotic Neurons Results in Functional Demethylation of Expressed Genes [ATAC-Seq] (Submitter supplied) 5-hydroxymethylcytosine (5hmC) occurs at maximal levels in postmitotic neurons where its accumulation is cell specific and correlated with gene expression. Here we demonstrate that the distribution of 5hmC in CG and non-CG dinucleotides is distinct, and that it reflects the binding specificity and genome occupancy of methylcytosine binding protein 2 (MeCP2). In expressed gene bodies, accumulation of 5hmCG acts in opposition to 5mCG resulting in “functional” demethylation and diminished MeCP2 binding, thus facilitating transcription. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 3 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA377730 Series Accession: GSE95627 ID: 200095627 2975. Enhancer connectome in primary human cells reveals target genes of disease-associated DNA elements (Submitter supplied) The imprecision of linking intergenic mutations to target genes has limited molecular understanding of diverse human diseases. Here, we show H3K27ac HiChIP generates high-resolution contact maps of active enhancers and target genes in rare primary human T cell subtypes and coronary artery smooth muscle cells. Differentiation of naïve T cells to either T helper 17 cells or regulatory T cells create subtype-specific enhancer-promoter interactions, specifically at regions of shared DNA accessibility. more... Organism: Homo sapiens; Mus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL23787 GPL20301 GPL18573 58 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394682 Series Accession: GSE101498 ID: 200101498 2976. Inflammatory Memory in Epidermal Stem Cells Accelerates Tissue Damage Responses (Submitter supplied) The body’s first line of defense against environmental assaults, the skin’s barrier, is maintained by epidermal stem cells (EpdSCs). Despite EpdSC’s vulnerability to inflammatory pressures, neither their primary response nor its enduring consequences are understood. Here, we unearth a prolonged memory to acute inflammation that enables EpdSCs to hasten barrier restoration following subsequent tissue damage. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 28 Samples FTP download: GEO (BW, TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA359188 Series Accession: GSE92967 ID: 200092967 2977. ATAC-seq analysis in K562 cells with or without HBD-1k region knockout, mouse KH2 embryonic stem cells (ESCs) and differentiated KH2 Embryoid bodies (EBs) (Submitter supplied) Cis-regulatory elements (CREs) are commonly recognized by correlative chromatin features, yet the molecular composition of the vast majority of CREs in chromatin remains unknown. Here we describe a CRISPR affinity purification in situ of regulatory elements (CAPTURE) approach to unbiasedly identify locus-specific chromatin-regulating protein complexes and long-range DNA interactions. Using an in vivo biotinylated endonuclease-deficient Cas9 protein and sequence-specific guide RNAs, we show high-resolution and selective isolation of chromatin interactions at a single copy genomic locus. more... Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL18573 14 Samples FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA387468 Series Accession: GSE99173 ID: 200099173 2978. Cancer-specific retargeting of BAF complexes by a prion-like domain (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18573 85 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94278/ Series Accession: GSE94278 ID: 200094278 2979. Cancer-specific retargeting of BAF complexes by a prion-like domain [ATAC-Seq] (Submitter supplied) Alterations in the function of transcriptional regulators can orchestrate oncogenic programs that are critical for the transformation and survival of cancer cells. Here we show that the BAF chromatin remodeling complex, which is mutated in over 20% of human tumors, interacts with EWSR1, a member of the FET family of proteins containing prion-like domains that are frequent partners in oncogenic fusions with transcription factors. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 13 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94272/ Series Accession: GSE94272 ID: 200094272 2980. In situ CAPTURE of chromatin interactions by biotinylated dCas9 (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL18573 GPL19057 175 Samples FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE88nnn/GSE88817/ Series Accession: GSE88817 ID: 200088817 2981. The Short Isoform of BRD4 Promotes HIV-1 Latency by Engaging Repressive SWI/SNF Chromatin Remodeling Complexes (Submitter supplied) BET proteins commonly activate cellular gene expression, yet inhibiting their recruitment paradoxically reactivates latent HIV-1 transcription. Here we identify the short isoform of BET family member BRD4 (BRD4S) as a novel corepressor of HIV-1 transcription. We found that BRD4S was enriched in chromatin fractions of latently infected T cells and was more rapidly displaced from chromatin upon BET inhibition than the long isoform. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL16791 32 Samples FTP download: GEO (WIG, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391180 Series Accession: GSE100266 ID: 200100266 2982. A chemical screen in zebrafish embryonic cells establishes that Akt activation is required for neural crest development [ATAC-seq] (Submitter supplied) The neural crest is a dynamic progenitor cell population that arises at the border of neural and non-neural ectoderm. The inductive roles of FGF, Wnt, and BMP at the neural plate border are well established, but the signals required for subsequent neural crest development remain poorly characterized. Here, we conducted a screen in primary zebrafish embryo cultures for chemicals that decrease neural crest formation, as read out by crestin:EGFP expression. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18413 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA378506 Series Accession: GSE95813 ID: 200095813 2983. Antagonistic activities of Sox2 and Brachyury control the fate choice of neuro-mesodermal progenitors (Submitter supplied) The spinal cord and mesodermal tissues of the trunk such as the vertebral column and skeletal musculature derive from neuro-mesodermal progenitors (NMPs). Sox2, Brachyury (T) and Tbx6 have been correlated with NMP potency and lineage choice, however, their exact role and interaction in these processes have not been revealed yet. Here we present a global analysis of NMPs and their descending lineages performed on purified cells from E8.5 wild-type and mutant embryos. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL19057 79 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA360989 Series Accession: GSE93524 ID: 200093524 2984. CTCF translates IL-2- and αKG-sensitive metabolic changes in T cells into context-dependent differentiation gene programs [ATAC-Seq] (Submitter supplied) We found that aspects of the IL-2-sensitive effector gene program in CD4+ Th1 and CD8+ Tc1 cells are regulated by glutamine and alpha-ketoglutarate (αKG)-induced events, in part through changes in DNA and histone methylation states. We further identified a novel mechanism by which IL-2- and αKG-sensitive metabolic changes regulate the association of CTCF with select genomic sites. αKG-sensitive CTCF sites were often associated with loci containing IL-2- and αKG-sensitive genome organization patterns and gene expression in T cells. more... Organism: Mus musculus Type: Other Platform: GPL17021 6 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA353554 Series Accession: GSE89038 ID: 200089038 2985. Analysis of the DNA accessibility upon multiple histone H1 variants by ATAC-seq (6 samples) (Submitter supplied) Combined depletion of H1.2 and H1.4 has a strong deleterious effect in the cancer cells examined, and induces a strong interferon (IFN) response with up-regulation of many IFN-stimulated genes (ISGs), which is not seen in individual H1 knock-downs. Although H1 participates to repress ISG promoters, its activation upon H1 KD is mainly generated by the activation of the IFN response through cytosolic nucleic acids receptors, IFN synthesis and JAK-STAT pathway activation. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392926 Series Accession: GSE100762 ID: 200100762 2986. Evolutionary Principles Predict 3D Chromatin Organization (Submitter supplied) TADs, CTCF loop domains, and A/B compartments have been identified as important structural and functional components of 3D chromatin organization, yet the relationship between these features is not well understood. Using high-resolution Hi-C and HiChIP we show that Drosophila chromatin is organized into domains we term compartmental domains that correspond precisely with A/B compartments at high resolution. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL13304 18 Samples FTP download: GEO (BW, HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA350820 Series Accession: GSE89244 ID: 200089244 2987. NFIA Controls the Brown Fat Gene Program by Co-Localizing with PPARgamma at Cell-Type-Specific Enhancers (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL16417 GPL11002 48 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83764/ Series Accession: GSE83764 ID: 200083764 2988. NFIA Controls the Brown Fat Gene Program by Co-Localizing with PPARgamma at Cell-Type-Specific Enhancers (chromatin) (Submitter supplied) Brown fat dissipates energy as heat and protects against obesity. Here, we identified nuclear factor I-A (NFIA) as a novel transcriptional regulator of brown fat by a genome-wide open chromatin analysis of murine brown and white fat followed by motif analysis of brown-fat-specific open chromatin regions. NFIA and the adipogenic master regulator, PPARgamma, co-localize at the brown-fat-specific enhancers. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16417 GPL17021 GPL11002 24 Samples FTP download: GEO (BEDGRAPH, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA326936 Series Accession: GSE83757 ID: 200083757 2989. Myc regulates chromatin decompaction and nuclear architecture during B cell activation (Submitter supplied) 50 years ago, Vincent Allfrey and colleagues discovered that lymphocyte activation triggers massive acetylation of chromatin. However, the molecular mechanisms driving epigeneticaccessibility are still unknown. We here show that stimulated lymphocytes decondense chromatin by three differentially regulated steps. First, chromatin is repositioned away from the nuclear periphery in response to global acetylation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platforms: GPL21273 GPL13112 GPL17021 258 Samples FTP download: GEO (BW, HIC, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA324130 Series Accession: GSE82144 ID: 200082144 2990. Genome-wide profiling of chromatin accessibility during microRNA-mediated neuronal reprogramming [ATAC-seq] (Submitter supplied) Neuronal microRNAs, miR-9/9* and miR-124 (miR-9/9*-124), exert reprogramming activities to direct cell-fate conversion of adult human fibroblasts to post-mitotic neurons and enable the generation of discrete neuronal subtypes with additional transcription factors. Previously, the molecular events underlying the neurogenic switch mediated by microRNAs during neuronal reprogramming were unknown. Here, we systematically dissected the neurogenic state induced by miR-9/9*-124 alone and reveal the surprising capability of miR-9/9*-124 in coordinately stimulating the reconfiguration of chromatin accessibilities, DNA methylation and transcriptome, leading to the generation of functionally excitable neurons, yet unbiased towards a particular subtype-lineage. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL16791 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA396221 Series Accession: GSE102021 ID: 200102021 2991. p53-dependent effects of DNA double-strand breaks on chromatin accessibility (Submitter supplied) We used ATAC-seq to detect changes in chromatin accessibility and nucleosome positioning around the MYC gene during the DNA double-strand break response in human cells and the dependence of these changes on p53. We found that, in the region ~50 kb downstream of MYC where p53 binds strongly, chromatin accessibility as measured by ATAC-seq fragment density increased during the DNA DSB response, corresponding to the removal of a single nucleosome. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395318 Series Accession: GSE101736 ID: 200101736 2992. The Dynamic Epigenetic Landscape of the Retina During Development, Reprogramming, and Tumorigenesis [ATAC-Seq_Mm] (Submitter supplied) In the developing retina, as in many other regions of the central nervous system, multipotent neural progenitor cells undergo unidirectional changes to produce differentiated cells in a precise spatiotemporal order. Here we profile the epigenetic and transcriptional changes that occur during retinal development in mice and humans. Although some progenitor genes and cell cycle genes were epigenetically silenced during retinogenesis, the most dramatic change was derepression of cell type–specific differentiation programs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 11 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE102nnn/GSE102092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA396569 Series Accession: GSE102092 ID: 200102092 2993. Blimp1 induces transient metastatic heterogeneity in pancreatic cancer [688M_ATAC-seq] (Submitter supplied) Purpose: Due to its high metastatic proclivity, pancreatic ductal adenocarcinoma (PDAC) is one of the most deadly types of cancer. Therefore, it is imperative to better understand how the disease spreads as it progresses. Using a novel genetically engineered mouse model that allows us to isolate a subpopulation of cancer cells with superior metastatic capacity, we show that this aggressive phenotype correlates exclusively with a strong hypoxia signature. more... Organism: Mus musculus Type: Other Platform: GPL19057 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA356320 Series Accession: GSE90918 ID: 200090918 2994. Blimp1 induces transient metastatic heterogeneity in pancreatic cancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other Platforms: GPL19057 GPL13112 53 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90825/ Series Accession: GSE90825 ID: 200090825 2995. Enhancer reprogramming promotes pancreatic cancer progression and metastasis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 136 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99311/ Series Accession: GSE99311 ID: 200099311 2996. Enhancer reprogramming promotes pancreatic cancer progression and metastasis [ATAC-seq] (Submitter supplied) Pancreatic ductal adenocarcinoma (PDA) is one of the most lethal human malignancies, owing in part to its propensity for metastasis. Here, we used an organoid culture system to investigate how transcription and the enhancer landscape become altered during each stage of PDA progression. This approach revealed that the metastatic transition is accompanied by massive, and recurrent alterations in enhancer activity. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA387924 Series Accession: GSE99275 ID: 200099275 2997. PHF6 regulates B-cell identity in acute lymphoblastic leukemia [ATAC-Seq] (Submitter supplied) Inactivating mutations in the zinc finger gene PHF6 are seen in approximately 40% of adult T-cell acute lymphoblastic leukemias (T-ALLs) and 3% of adult acute myeloid leukemias (AMLs). The absence of PHF6 mutations in B-cell lineage malignancies has led to the hypothesis that PHF6 may act as a lineage-specific tumor suppressor gene. Here, we demonstrate that PHF6 plays a critical role in regulating B-cell identity in the context of B-cell precursor acute lymphoblastic leukemia (preB-ALL). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 5 Samples FTP download: GEO (GFF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA386020 Series Accession: GSE98716 ID: 200098716 2998. Chromatin accessibility dynamics reveal novel functional enhancers in C. elegans (Submitter supplied) Chromatin accessibility, a crucial component of genome regulation, has mostly been studied in homogenous and simple systems, such as isolated cell populations or early development models. Whether it can sensitively be assessed in complex, dynamic systems in vivo remains largely unexplored. In this study, we identify chromatin accessibility changes in a whole organism from embryogenesis to adulthood, using C. more... Organism: Caenorhabditis elegans Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13657 10 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352701 Series Accession: GSE89608 ID: 200089608 2999. A Shared Runx1-bound Zbtb16 Enhancer Directs Innate and Innate-Like Lymphoid Lineage Development (Submitter supplied) Combined with CRISPR/Cas9 and ATAC-seq approach, we identified open chromatin sites critical for PLZF expression in ILC and NKT innate lineages. Runx1 is bound to multiple open chromatin sites and is essential for PLZF expression. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 11 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA385830 Series Accession: GSE98662 ID: 200098662 3000. Mapping open chromatin dynamics of cortical neuron differentiation from human induced pluripotent stem cells (iPSCs) by ATAC-Seq (Submitter supplied) We aim to profile the dynamic changes of chromatin accessibility (openness) to transcription factors during cortical neuron differentiation from human iPSCs. We used ATAC-seq to map open chromatins in iPSCs, neural stem cells (NSCs) at day 27 and day 33 of neural induction (designated as iN-d30 for simplicity), and neurons at day 41 (iN-d41). We found that there were robust dynamic changes of open chromatins that are corresponding to cell stage-specific gene function both at genome-wide level and at individual loci of interest to neurodevelopment and psychiatric disorders, with NSC (iN-d30) gaining most (89%) of the neuron specific open chromatin peaks. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA289650 Series Accession: GSE70823 ID: 200070823 3001. ATAC-seq profiling of open chromatin in the root tips of four plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) and two Arabidopsis thaliana cell types (root hair and non-hair epidermal cells) (Submitter supplied) The transcriptional regulatory structure of plant genomes remains poorly defined relative to that of animals. It has been unclear how many cis-regulatory elements generally exist in plant genomes, where these elements lie in relation to their target promoters, and how these features are conserved across species. We employed the Assay for Transposase-Accessible Chromatin with sequencing (ATAC-seq) in four different plant species (Arabidopsis thaliana, Medicago truncatula, Solanum lycopersicum, and Oryza sativa) to delineate open chromatin regions and transcription factor (TF) binding sites across each genome. more... Organism: Arabidopsis thaliana; Solanum lycopersicum; Oryza sativa; Medicago truncatula Type: Genome binding/occupancy profiling by high throughput sequencing 5 related Platforms 15 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA394532 Series Accession: GSE101482 ID: 200101482 3002. Multi-cellular Transcriptional Profiling Reveals an Epigenetic Barrier to Adult Heart Regeneration [ATAC-Seq] (Submitter supplied) Background - The inability of the adult mammalian heart to regenerate following injury represents a major barrier in cardiovascular medicine. In contrast, the neonatal mammalian heart retains a transient capacity for regeneration, which is lost shortly after birth. Defining the molecular mechanisms that govern regenerative capacity in the neonatal period remains a central goal in cardiac biology. Here, we construct a transcriptional atlas of multiple cardiac cell populations, which enables comparative analyses of the regenerative (neonatal) versus non-regenerative (adult) state for the first time. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA378352 Series Accession: GSE95763 ID: 200095763 3003. Multi-cellular Transcriptional Profiling Reveals an Epigenetic Barrier to Adult Heart Regeneration [RNA-Seq] (Submitter supplied) Background - The inability of the adult mammalian heart to regenerate following injury represents a major barrier in cardiovascular medicine. In contrast, the neonatal mammalian heart retains a transient capacity for regeneration, which is lost shortly after birth. Defining the molecular mechanisms that govern regenerative capacity in the neonatal period remains a central goal in cardiac biology. Here, we construct a transcriptional atlas of multiple cardiac cell populations, which enables comparative analyses of the regenerative (neonatal) versus non-regenerative (adult) state for the first time. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA378351 Series Accession: GSE95762 ID: 200095762 3004. Multicellular Transcriptional Analysis of Mammalian Heart Regeneration (Submitter supplied) The inability of the adult mammalian heart to regenerate following injury represents a major barrier in cardiovascular medicine. In contrast, the neonatal mammalian heart retains a transient capacity for regeneration, which is lost shortly after birth. Defining the molecular mechanisms that govern regenerative capacity in the neonatal period remains a central goal in cardiac biology. Here, we construct a transcriptional atlas of multiple cardiac cell populations, which enables comparative analyses of the regenerative (neonatal) versus non-regenerative (adult) state for the first time. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 64 Samples FTP download: GEO (TXT, XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA378265 Series Accession: GSE95755 ID: 200095755 3005. ATAC-seq and H4K16ac ChIP-seq profiles of E14 ES cells treated with cycloheximide (Submitter supplied) ATAC-seq and H4K16ac ChIP-seq profiles of E14 ES cells before and after treatment with cycloheximide (CHX, 1 ug/ml) for 3 hours. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL21103 14 Samples FTP download: GEO (BED, BIGWIG, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA384807 Series Accession: GSE98358 ID: 200098358 3006. Mbd3-null and control lymphoid progenitor cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL21103 720 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101735/ Series Accession: GSE101735 ID: 200101735 3007. ATAC-seq analysis of chromatin accessibility in Mbd3-null and control lymphoid progenitor cells (Submitter supplied) To determine the role of Mbd3/NuRD in lymphopoiesis, chromatin accessbility was analysed in purified populations of Mbd3-deleted and control lymphoid progenitor cells using the assay for transposase-accessible chromatin using sequencing (ATAC-seq). Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE101nnn/GSE101729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA395309 Series Accession: GSE101729 ID: 200101729 3008. Medial Ganglionic Eminence and Cortical Organoids Model Human Brain Development and Interneuron Migration [ATAC-seq] (Submitter supplied) Organoid techniques provide unique platforms to model brain development and neurological disorders. While organoids recapitulating corticogenesis were established, a system modeling human medial ganglionic eminence (MGE) development, a critical ventral brain domain producing cortical interneurons and related lineages, remains to be developed. Here, we describe a system to generate MGE or cortex-specific organoids from human pluripotent stem cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20301 3 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383297 Series Accession: GSE97880 ID: 200097880 3009. ASCL1 defines differentiation-competent GBM cells and directs neoplastic cells towards neuronal fate (Submitter supplied) We identified a subgroup of patient-derived glioblastoma (GBM) cells that express high levels of the neurogenic transcription factor, ASCL1, which predicts response to pharmacological inhibition of the Notch signaling pathway. Treatment of ASCL1hi GBM cells with a Notch signaling inhibitor induced a change in cell fate from neoplastic to neuronal. Importantly, acquisition of the neuronal fate was accompanied by a reduction in tumorigenic potential. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 11 Samples FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96088/ Series Accession: GSE96088 ID: 200096088 3010. p53 Regulates Enhancer Accessibility and Activity in Response to DNA Damage (Submitter supplied) The tumor suppressor p53 is a well-characterized transcription factor that can bind gene promoters and regulate target gene transcription in response to DNA damage. Recent studies, however, have revealed that p53 binding events occur predominantly within regulatory enhancer elements. The effect of p53 binding on enhancer function has not been systematically evaluated. Here, we perform a genome-scale analysis of enhancer activity from p53-bound sequences using a series of massively parallel reporter assays (MPRAs) coupled with the assay for transpose-accessible chromatin (ATAC-Seq). more... Organism: synthetic construct; Homo sapiens Type: Other 4 related Platforms 16 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA326967 Series Accession: GSE83780 ID: 200083780 3011. Chromatin structures in pre-selection DP thymocytes of WT and Bcl11b hypomorphic mutant (Submitter supplied) T-cell receptor (TCR) signals play a critical role in guiding selected thymocytes to distinct lineages by activating genes for transcription factors, such as ThPOK and Runx3, for the helper- or cytotoxic-lineage, respectively. Here we show that Bcl11b, known as an early T-lineage commitment factor, is essential for proper expression of ThPOK and Runx3. Loss of Bcl11b resulted in premature and random expression of these specification factors, leading to lineage scrambling that was disconnected from TCR restriction by MHC. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 8 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA356605 Series Accession: GSE90989 ID: 200090989 3012. Krox20 hindbrain regulation involves multiple modes of cooperation between cis-acting elements [ATAC-seq] (Submitter supplied) Many genes harbour multiple transcriptional enhancers that act concomitantly to achieve robust and precise spatial-temporal expression. In vertebrates, however, the mechanisms underlying cooperation between cis-acting elements are poorly documented. The mouse gene Krox20 encodes a transcription factor required for the specification of two segments (rhombomeres) of the developing hindbrain. In rhombomere 3, Krox20 is subject to positive feedback, governed by enhancer A, which is directly bound by the KROX20 protein, whereas another element, C, distant from 70 kb, was supposed to be only required for initiation of expression. more... Organism: Mus musculus Type: Other Platform: GPL19057 24 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380677 Series Accession: GSE97102 ID: 200097102 3013. Identifying ASCL1-mediated chromatin changes in primary GBM stem cell cultures [ATAC-seq] (Submitter supplied) ASCL1 mediates neuronal differentiation of GBM stem cell (GSC) cultures. We sought to identify chromatin changes upon induced ASCL1 expression in primary human GSC cultures. In this dataset, we include ATAC-seq data obtained from GSC cultures harbouring a CRISPR-deletion of ASCL1. We assessed differential ASCL1 binding between control and GSC cultures induced to overexpress ASCL1 after 14 days of doxycycline treatment. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354999 Series Accession: GSE90547 ID: 200090547 3014. Genome-wide chromatin accessibility profiling of cardiomyocyte differentiation from human embryonic stem cells and iPS cells (ATAC-seq) (Submitter supplied) In this study, time-course genome-wide chromatin accessibility of caidiomyocyte differentiation derived from human hESCs and hiPSCs was profiled. Two hiPSC lines (C15 and C20) and two hESC lines (H1 and H9) were differentiated to caidiomyocytes by ATAC-seq. The cells were collected for ATAC-seq at day 0(undifferentiated cells) day 2 (mesoderm), day 4 (cardiac mesoderm) and day 30 (cardiomyocytes). Organism: Homo sapiens Type: Other Platform: GPL11154 32 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA338180 Series Accession: GSE85330 ID: 200085330 3015. ImmGen ATAC-seq data (Submitter supplied) Immunological Genome Project chromatin accessibility maps for 86 different immunocytes (ATAC-seq). Immune cell populations were isolated in high-purity by flow cytometry. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 185 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392905 Series Accession: GSE100738 ID: 200100738 3016. Repression of stress-induced LINE-1 expression protects cancer cell populations from lethal drug-exposures [ATAC-Seq] (Submitter supplied) DTP heterochromatin in genomic repeat regions protects the population from drug-induced death. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 18 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100750/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA392915 Series Accession: GSE100750 ID: 200100750 3017. Repression of stress-induced LINE-1 expression protects cancer cell populations from lethal drug-exposures (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL16791 51 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74180/ Series Accession: GSE74180 ID: 200074180 3018. Repression of stress-induced LINE-1 expression protects cancer cell populations from lethal drug-exposures [ATAC-Seq] (Submitter supplied) Establishing and maintaining phenotypic heterogeneity within cell and organismal populations is an evolutionarily conserved strategy that ensures survival of the population following stressful exposures. We previously identified a transient, reversible, drug-tolerant cancer cell subpopulation that survives otherwise lethal drug exposures. Here we show that these drug-tolerant persisters (DTPs) assume a highly heterochromatic state, which requires factors that modify or bind trimethylated H3 lysine 9 (H3K9me3). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 7 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA301678 Series Accession: GSE73874 ID: 200073874 3019. IFN-γ Represses M2 Gene Expression in Human Macrophages by Suppressing and Disassembling MAF-binding Enhancers [ATAC-seq] (Submitter supplied) Mechanisms by which IFN-γ activates genes to promote macrophage activation are well studied, but little is known about mechanisms and functions of IFN-γ-mediated gene repression. We used an integrated transcriptomic and epigenomic approach to analyze chromatin accessibility, histone modifications, transcription factor binding, and gene expression in IFN-γ-primed human macrophages. IFN-γ suppressed basal expression of genes corresponding to an ‘M2’-like homeostatic/reparative phenotype. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA384903 Series Accession: GSE98365 ID: 200098365 3020. RNA-seq and ChIP-seq data of ASXL1/2 in Hematopoiesis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL16791 GPL17021 54 Samples FTP download: GEO (BIGWIG, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84365/ Series Accession: GSE84365 ID: 200084365 3021. ATAC-seq of AML1-ETO9 leukemias (Submitter supplied) The goals of this study are to identify ASXL2 binding sites in SKNO1 cells Organism: Mus musculus Type: Other Platform: GPL17021 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA329033 Series Accession: GSE84364 ID: 200084364 3022. Type I IFNs and TNF Cooperatively Reprogram Epigenomic Landscape of Human Macrophages to Promote Inflammatory Activation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 100 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100383/ Series Accession: GSE100383 ID: 200100383 3023. Type I IFNs and TNF Cooperatively Reprogram Epigenomic Landscape of Human Macrophages to Promote Inflammatory Activation [RNA-seq] (Submitter supplied) Crossregulation of TLR responses by cytokines is essential for effective host defense, avoidance of toxicity, and homeostasis, but underlying mechanisms are not well understood. A comprehensive approach integrating RNA-seq, ChIP-seq and ATAC-seq digital footprinting showed that TNF and type I IFNs extensively remodel chromatin states in human macrophages to differentially regulate transcriptional induction of NF-κB, STAT, antiviral, and metabolic genes by LPS. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 24 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391490 Series Accession: GSE100382 ID: 200100382 3024. Type I IFNs and TNF Cooperatively Reprogram Epigenomic Landscape of Human Macrophages to Promote Inflammatory Activation [ChIP-seq] (Submitter supplied) Crossregulation of TLR responses by cytokines is essential for effective host defense, avoidance of toxicity, and homeostasis, but underlying mechanisms are not well understood. A comprehensive approach integrating RNA-seq, ChIP-seq and ATAC-seq digital footprinting showed that TNF and type I IFNs extensively remodel chromatin states in human macrophages to differentially regulate transcriptional induction of NF-κB, STAT, antiviral, and metabolic genes by LPS. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 36 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391491 Series Accession: GSE100381 ID: 200100381 3025. Type I IFNs and TNF Cooperatively Reprogram Epigenomic Landscape of Human Macrophages to Promote Inflammatory Activation [ATAC-seq] (Submitter supplied) Crossregulation of TLR responses by cytokines is essential for effective host defense, avoidance of toxicity, and homeostasis, but underlying mechanisms are not well understood. A comprehensive approach integrating RNA-seq, ChIP-seq and ATAC-seq digital footprinting showed that TNF and type I IFNs extensively remodel chromatin states in human macrophages to differentially regulate transcriptional induction of NF-κB, STAT, antiviral, and metabolic genes by LPS. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 40 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE100nnn/GSE100380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA391489 Series Accession: GSE100380 ID: 200100380 3026. Naked mole rat cells show resistance to iPSC reprogramming and signs of more stable epigenome (Submitter supplied) Naked mole rat (NMR) is a valuable model for aging and cancer research due to its exceptional longevity and resistance to tumorigenesis. In an effort to generate NMR induced pluripotent stem cells (iPSCs) we observed that reprogramming efficiency of NMR fibroblasts in repsonse to OSKM overexpression was drasticaly lower than that of mouse fibroblasts. To understand the cause of NMR resistance to reprogramming we screened for factors that improve reprogramming effciency. more... Organism: Mus musculus; Heterocephalus glaber Type: Other Platforms: GPL21195 GPL17021 4 Samples FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA326430 Series Accession: GSE83585 ID: 200083585 3027. Direct and tissue-specific assessment of the damaging potential of regulatory SNPs (Submitter supplied) In the era of GWAS and personalized medicine systematically deciphering the impact of non-coding sequence variation on the regulatory genome is a critical bottleneck. Here we present Sasquatch a novel computational approach to estimate and visualize the effects of noncoding-variants on transcription factor (TF) binding using DNase I footprint data. Developed to provide an unbiased approach to prioritise non-coding variants for functional analysis, Sasquatch performs exhaustive, k-mer based analysis of average footprints to determine any k-mers potential for TF binding and quantifies how this is changed by sequence variants. more... Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL19057 GPL15520 6 Samples FTP download: GEO (BEDGRAPH, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA341669 Series Accession: GSE86393 ID: 200086393 3028. Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL16417 GPL17021 88 Samples FTP download: GEO (BW, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97871/ Series Accession: GSE97871 ID: 200097871 3029. Tissue-specific CTCF/Cohesin-mediated chromatin architecture delimits enhancer interactions and function in vivo (ATAC-Seq) (Submitter supplied) The genome is organized via CTCF/cohesin binding sites, which partition chromosomes into 1-5Mb topologically associated domains (TADs), and further into smaller contact sub-domains within TADs (sub-TADs; 40-1000kb). Here we examined in vivo an ~80kb sub-TAD, containing the mouse α-globin gene cluster, lying within a ~1Mb TAD. We find that the sub-TAD is flanked by predominantly convergent CTCF/cohesin sites which are ubiquitously bound by CTCF but only interact during erythropoiesis, defining a self-interacting erythroid compartment. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL16417 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383114 Series Accession: GSE97866 ID: 200097866 3030. Bptf maintains chromatin accessibility and the self-renewal capacity of mammary gland stem cells [ATAC-Seq] (Submitter supplied) Chromatin remodeling is a key requirement for transcriptional control of cellular differentiation. However, the factors that alter chromatin architecture in mammary stem cells (MaSCs) are poorly understood. Here we show that Bptf, the largest subunit of the NURF chromatin remodeling complex, is essential for MaSC self-renewal and differentiation of epithelial cells in the mammary gland. Bptf depletion arrests cells at a previously undefined stage of epithelial differentiation that is associated with an incapacity to achieve the luminal cell fate. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383652 Series Accession: GSE98001 ID: 200098001 3031. FANS-assisted ATAC-Seq to identify developmentally active endothelial enhancers (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL21930 GPL16509 10 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97257/ Series Accession: GSE97257 ID: 200097257 3032. FANS-assisted ATAC-Seq to identify developmentally active endothelial enhancers [RNA-seq] (Submitter supplied) This work sought to identify endothelial-specific enhancer elements by applying ATAC-Seq to nuclei isolated from Tg(fli1a:egfp) transgenic zebrafish embryos. Organism: Danio rerio Type: Expression profiling by high throughput sequencing Platform: GPL21930 4 Samples FTP download: GEO (TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA381095 Series Accession: GSE97256 ID: 200097256 3033. FANS-assisted ATAC-Seq to identify developmentally active endothelial enhancers [ATAC-seq] (Submitter supplied) Fluorescence-Activated Nuclei Sorting (FANS)-assisted Assay for Transposase Accessible Chromatin sequencing (ATAC-seq) This work sought to identify endothelial-specific enhancer elements by applying ATAC-Seq to nuclei isolated from Tg(fli1a:egfp) transgenic zebrafish embryos. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16509 6 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA381096 Series Accession: GSE97255 ID: 200097255 3034. Widespread changes in nucleosome accessibility without changes in nucleosome occupancy during a rapid transcriptional induction (Submitter supplied) Activation of transcription requires alteration of chromatin by complexes that increase the accessibility of nucleosomal DNA. Removing nucleosomes from regulatory sequences has been proposed to play a significant role in activation. We tested whether changes in nucleosome occupancy occurred on the set of genes that are activated by the unfolded protein response (UPR). We observed no decrease in occupancy on most promoters, gene bodies, and enhancers. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL13304 GPL17275 64 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA377957 Series Accession: GSE95689 ID: 200095689 3035. Genome-wide map of HAEC chromatin landscape under resting and TNFa, IL1b, and OxPAPC stimulation, with corresponding transcription factor binding and RNA expression (Submitter supplied) We report the dynamic enhancer landscape of HAEC at baseline and under inflammatory stimulation, and also show the cistromes of ETS, AP-1 as well as key signal dependent transcription factors, with corresponding gene expression. We also describe the inflammatory transcriptional profile caused by inhibition of the ETS factor ERG with siRNA. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL20301 75 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354352 Series Accession: GSE89970 ID: 200089970 3036. The deacetylase activity of histone deacetylase 3 is required for productive VDJ recombination and B cell development [ATAC-seq] (Submitter supplied) Histone deacetylase 3 (HDAC3) is the catalytic component of NCoR/SMRT corepressor complexes that mediate the actions of transcription factors implicated in the regulation of B cell development and function. We crossed Hdac3 conditional knockout mice with Mb1-Cre knockin animals to delete Hdac3 in early progenitor B cells. The spleens of Hdac3F/-Mb1-Cre+/- mice were virtually devoid of mature B cells, and B220+CD43+ B cell progenitors accumulated within the bone marrow. more... Organism: Drosophila melanogaster; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL23445 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA385894 Series Accession: GSE98649 ID: 200098649 3037. Chromatin remodeling and dynamics of hematopoietic stem cells and progenitors (Submitter supplied) Hematopoietic stem cells (HSCs) have the capability to self-renew and differentiate into all blood cell lineages. How chromatin state regulates self-renewal and differentiation of HSC is not fully understood. Here, we provided the first global landscape of chromatin state in long term (LT)-HSCs, short term (ST)-HSCs and multipotent progenitor (MPP) by ATAC-seq analysis. We discovered that the promoter regions of genes that control cell cycle, and several important miRNAs were maintained as open chromatin state in HSCs. more... Organism: Mus musculus Type: Other Platform: GPL13112 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA335747 Series Accession: GSE84959 ID: 200084959 3038. Innate versus adaptive lymphoid cell fate choice is controlled by the E-Id protein axis [ATAC-Seq] (Submitter supplied) The lymphoid branch of the immune defense is composed of innate and adaptive immune cells. Using multiple genetic strategies we demonstrate that in the thymus E2A and HEB act in synergy to establish T cell identity and to suppress the aberrant development of innate lymphoid cells that include ILC2 and LTi-like cells. We found that E2A and HEB induce T cell fate by activating the expression of an ensemble of genes encoding for proteins associated with Notch- and pre-TCR signaling and to promote TCRβ antigen receptor assembly. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 2 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA376694 Series Accession: GSE95338 ID: 200095338 3039. Innate versus adaptive lymphoid cell fate choice is controlled by the E-Id protein axis [RNA-Seq] (Submitter supplied) The lymphoid branch of the immune defense is composed of innate and adaptive immune cells. Using multiple genetic strategies we demonstrate that in the thymus E2A and HEB act in synergy to establish T cell identity and to suppress the aberrant development of innate lymphoid cells that include ILC2 and LTi-like cells. We found that E2A and HEB induce T cell fate by activating the expression of an ensemble of genes encoding for proteins associated with Notch- and pre-TCR signaling and to promote TCRβ antigen receptor assembly. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA376693 Series Accession: GSE95337 ID: 200095337 3040. Dynamic Reorganization of Chromatin Accessibility Signatures during Dedifferentiation of Secretory Precursors into Lgr5+ Intestinal Stem Cells (Submitter supplied) To define differences in chormatin accessibility and histome modifications in intestinal stem and epithelial cells, we performed ATAC-seq and ChIP-seq. We used RNA-sequencing to profile gene expression changes during intestinal stem cell differentiation into different cell types. We find that gene expression is correlated with the chromatin accessibility and reveals differences between intestinal stem cells types. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19057 49 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA325805 Series Accession: GSE83394 ID: 200083394 3041. Mapping PRDM9 binding and its effects in transfected HEK293T cells (Submitter supplied) We report ChIP-seq, RNA-seq, and ATAC-seq results from HEK293T cells transfected with various versions of the meiotic recombination protein PRDM9, in order to learn about its DNA-binding properties, its effects on gene expression and chromatin organization, and which epigenetic factors influence binding and recombination outcomes. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL15433 GPL16791 27 Samples FTP download: GEO (BEDGRAPH, DIFF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE99nnn/GSE99407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA388401 Series Accession: GSE99407 ID: 200099407 3042. An environment-dependent transcriptional network regulates human microglia phenotypes (Submitter supplied) Microglia play essential roles in central nervous system (CNS) homeostasis and influence diverse aspects of neuronal function. Although dysregulation of microglia activity is genetically linked to neurodegenerative and behavioral diseases, the transcriptional mechanisms that specify human microglia phenotypes are largely unknown. We report here on the transcriptomes and epigenetic landscapes of human microglia isolated from surgically resected brain tissue, revealing broad similarities but also significant differences with mouse microglia. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19057 GPL17021 GPL21103 41 Samples FTP download: GEO (BED, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354308 Series Accession: GSE89960 ID: 200089960 3043. NicE-seq: high resolution open chromatin profiling (Submitter supplied) Mammalian chromatin is dynamic and contains structural information that leads to transcriptional regulation of genes by recruiting transcription factors and altering nucleosome positioning. Here, we describe open chromatin mapping using Nicking Enzyme assisted sequencing (NicE-seq) for integrative epigenomic analysis. NicE-seq captures open chromatin sites in both fixed and native cells and reveals the genomic location of open chromatin sites (OCS) and transcription factor occupancy at single nucleotide resolution, with as few as 250 HCT116 cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL18573 14 Samples FTP download: GEO (BEDGRAPH, BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383144 Series Accession: GSE97889 ID: 200097889 3044. Epigenetic analysis of tumor-specific CD8 T cells in murine and solid tumors (Submitter supplied) ATACseq analysis of dysfunctional CD8 T cells in progressing tumors. The overall goal of this study was to elucidate chromatin states associated with functional unresponsiveness in tumor-specific CD8 T cells in the context of mouse and human tumors. As comparison we also investigated chromatin state dynamics associated with CD8 T cells differentiation to functional effector and memory T cells during an acute listeria infection. Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL17021 GPL16791 59 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA351717 Series Accession: GSE89308 ID: 200089308 3045. Mll3 and Mll4 facilitate enhancer RNA synthesis and transcriptional elongation from promoters independently of H3K4 monomethylation (Submitter supplied) Monomethylation of histone H3 at lysine 4 (H3K4me1) and acetylation of histone H3 at lysine 27 (H3K27ac) are correlated with transcriptionally engaged enhancer elements, but the functional impact of these modifications on enhancer activity is not well understood. Here we used CRISPR/Cas9 genome editing to separate catalytic activity-dependent and independent functions of Mll3 (Kmt2c) and Mll4 (Kmt2d, Mll2), the major enhancer H3K4 monomethyltransferases. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19057 48 Samples FTP download: GEO (BEDGRAPH, BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98063/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA383847 Series Accession: GSE98063 ID: 200098063 3046. Modeling gene regulation from matched expression and chromatin accessibility data (Submitter supplied) We propose a statistical method to model gene regulation by paired expression and chromatin accessibility (PECA) data, which dissects the regulatory elements (RE) of the genome by modeling their interaction with general chromatin regulators (CR) and sequence-specific transcriptional regulators (TF) and consequent effects on transcriptional changes. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other Platform: GPL17021 6 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE98nnn/GSE98479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA385189 Series Accession: GSE98479 ID: 200098479 3047. Immune-restricted epigenetic reader SP140 maintains macrophage identity and activation states critical to intestinal homeostasis [ATAC-Seq] (Submitter supplied) Introduction: SP140 is a bromodomain/plant homeo domain (PHD)-containing reader with immune-restricted expression, and single nucleotide polymorphisms (SNPs) within SP140 associate with Crohn’s disease (CD). However, the function of SP140 and the consequences of disease-associated SP140 SNPs have remained unknown. Results: Individuals carrying CD-associated SNPs within SP140 had defective SP140 mRNA splicing, diminished SP140 protein, and severely suppressed innate immune signatures that stratified them from other CD patients. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA350528 Series Accession: GSE89177 ID: 200089177 3048. Pax7 remodels the chromatin landscape in skeletal muscle stem cells (Submitter supplied) The mechanisms by which Pax7 promotes skeletal muscle stem (satellite) cell identity are not yet understood. We have taken advantage of pluripotent stem cells wherein the induced expression of Pax7 robustly initiates the muscle program and enables the generation of muscle precursors that repopulate the satellite cell compartment upon transplantation. Pax7 binding was excluded from H3K27 tri-methylated regions, suggesting that recruitment of this factor is circumscribed by chromatin state. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 42 Samples FTP download: GEO (BED, BIGWIG, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354348 Series Accession: GSE89977 ID: 200089977 3049. BAF60 binding sites and their role in Modulating DNA accessibility in Arabidopsis thaliana (Submitter supplied) SWI/SNF protein BAF60 mediates seedling growth Organism: Arabidopsis thaliana Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17639 9 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89346/ Series Accession: GSE89346 ID: 200089346 3050. Transcriptional and accessible chromatin profiles during conversion process of alternatively activated macrophages (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95003/ Series Accession: GSE95003 ID: 200095003 3051. Transcriptional and accessible chromatin profiles during conversion process of alternatively activated macrophages (RNA-Seq) (Submitter supplied) Whether inflammatory macrophages can adopt features of the tissue resident niche and what mechanisms mediate phenotypic conversion remain unclear. In this study, we show by cell surface phenotyping, as well as by RNA-Seq transcriptional profiling and ATAC-Seq open chromatin regions profiling, that inflammatory monocyte can adopt a tissue resident phenotype, which is also accompanied by re-programming of the transcriptional profiles and remodeling of the open chromatin landscape. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL13112 9 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA375115 Series Accession: GSE95002 ID: 200095002 3052. Transcriptional and accessible chromatin profiles during conversion process of alternatively activated macrophages (ATAC-Seq) (Submitter supplied) Whether inflammatory macrophages can adopt features of the tissue resident niche and what mechanisms mediate phenotypic conversion remain unclear. In this study, we show by cell surface phenotyping, as well as by RNA-Seq transcriptional profiling and ATAC-Seq open chromatin regions profiling, that inflammatory monocyte can adopt a tissue resident phenotype, which is also accompanied by re-programming of the transcriptional profiles and remodeling of the open chromatin landscape. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 9 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA375114 Series Accession: GSE95001 ID: 200095001 3053. ATAC sequencing of K-562 cells (Submitter supplied) We analysed the global effect of c-Myb knockdown and rescue with ectopically expressed WT c-Myb and c-Myb D152V on chromatin accessibility by ATAC-seq Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA358685 Series Accession: GSE92871 ID: 200092871 3054. Chromatin accessibility landscape of cutaneous T cell lymphoma and dynamic response to HDAC inhibitors (Submitter supplied) Here, we define the landscape and dynamics of active regulatory DNA in cutaneous T cell lymphoma (CTCL) by Assay of Transposase-Accessible Chromatin (ATAC-seq). Analysis of 111 human CTCL and control samples revealed extensive chromatin signatures that distinguished leukemic vs. non-leukemic (host) CD4+ T cells in CTCL patients, vs. CD4+ T cells in healthy donors. We identify three dominant patterns of transcription factor (TF) activation that drive leukemia regulomes, as well as TF deactivations that alter host T cells in CTCL patients. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 126 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA339552 Series Accession: GSE85853 ID: 200085853 3055. Epithelial-Mesenchymal Micro-Niches Govern Stem Cell Lineage Choices (ATAC-seq) (Submitter supplied) Adult tissue stem cells (SCs) reside in niches, which through intercellular contacts and signaling, influence SC behavior. Once activated, SCs typically give rise to short-lived transit-amplifying cells (TACs), which then progress to differentiate into their lineages. Here, using single cell RNA-sequencing, we unearth unexpected heterogeneity among SCs and TACs of hair follicles. We trace the roots of this heterogeneity to micro-niches along epithelial-mesenchymal interfaces, where progenitors display molecular signatures reflective of spatially distinct local signals and intercellular interactions. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379620 Series Accession: GSE96782 ID: 200096782 3056. Cis Regulatory Element Scan by Tiling-deletion and Sequencing (Submitter supplied) Here we report a highly scalable strategy for unbiased discovery and functional characterization of cis regulatory elements in the genome. These results demonstrate the utility of our cis element discovery strategy and reveal the dual function of gene promoters: they not only initiate transcription of their own genes, but could also control transcription of nearby genes. Organism: Homo sapiens; synthetic construct Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21616 GPL20301 23 Samples FTP download: GEO (BED, BW, PDF, TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320305 Series Accession: GSE81026 ID: 200081026 3057. Rare cell variability and drug-induced reprogramming as a mode of cancer drug resistance [ATAC-seq] (Submitter supplied) Therapies targeting signaling molecules mutated in cancers can often have striking short-term effects, but the emergence of resistant cancer cells is a major barrier to full cures. Resistance can sometimes result from a secondary mutations in rare cells, but other times, there is no clear genetic cause, raising leaving the possibility of non-genetic rare cell variability. Here, we show that melanoma cells can display profound transcriptional variability at the single cell level that predicts which cells will ultimately resist drug treatment. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 17 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA382753 Series Accession: GSE97680 ID: 200097680 3058. TCF21 and Aryl-hydrocarbon receptor gene cooperate to activate a pro-atherosclerotic gene expression program (Submitter supplied) Genome-wide association studies (GWAS) for coronary artery disease (CAD, also termed coronary heart disease, CHD) have discovered and validated 48 loci genome-wide and recent 1000-Genomes based meta-analyses have discovered additional 8 loci with significant association, however, true follow-up studies on the mechanisms of association are still scarce. Here we analyze the relationship of two transcription factors, TCF21, one of the lead GWAS candidate genes for coronary artery disease and AHR, aryl hydrocarbon receptor, which previously was not implicated as fundamental for the atherosclerotic process. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA338802 Series Accession: GSE85565 ID: 200085565 3059. The Biotagging toolkit for analysis of specific cell populations in zebrafish reveals gene regulatory logic encoded in the nuclear transcriptome (Submitter supplied) Interrogation of gene regulatory circuits in complex organisms requires precise tools for the selection of individual cell types, as well as robust methods for tissue-specific labeling and biochemical profiling of target proteins. By exploiting multiple transgenesis strategies, we have developed a tissue-specific binary in vivo biotinylation system in zebrafish termed "biotagging", a versatile methodology that uses genetically-encoded components to biotinylate target proteins, enabling in-depth genome-wide analyses of their molecular interactions. more... Organism: Danio rerio Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL14875 GPL18413 GPL20828 18 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352869 Series Accession: GSE89670 ID: 200089670 3060. Dynamic gene regulatory networks of human myeloid differentiation [ATAC-seq_siRNA] (Submitter supplied) We utilize gene expression and open chromatin footprinting data to build a gene regulatory network of key transcription factors that capture the cell and time-specific regulatory programs specified during human myeloid differentiation. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 8 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA343598 Series Accession: GSE87114 ID: 200087114 3061. KAT–independent gene regulation by Tip60 promotes ESC self-renewal but not pluripotency (Submitter supplied) Although histone-modifying enzymes are assumed to function in a manner dependent on their enzymatic activities, this assumption remains untested for many factors. Here we show the Tip60 (Kat5) lysine acetyltransferase (KAT), which is essential for embryonic stem cell (ESC) self-renewal and pre-implantation development, performs these functions independently of its KAT activity. Unlike ESCs depleted of Tip60, KAT–deficient ESCs exhibited minimal alterations in gene expression, chromatin accessibility at Tip60 binding sites, and self-renewal, thus demonstrating a critical KAT–independent role of Tip60 in ESC maintenance. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL13112 GPL21493 GPL19057 48 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA338692 Series Accession: GSE85505 ID: 200085505 3062. Dynamic gene regulatory networks of human myeloid differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18573 216 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79046/ Series Accession: GSE79046 ID: 200079046 3063. Dynamic gene regulatory networks of human myeloid differentiation [ATAC-seq] (Submitter supplied) We utilize gene expression and open chromatin footprinting data to build a gene regulatory network of key transcription factors that capture the cell and time-specific regulatory programs specified during human myeloid differentiation. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 96 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA314782 Series Accession: GSE79019 ID: 200079019 3064. Clonally stable Vκ allelic choice instructs Igκ repertoire (Submitter supplied) Although much research has been done to understand how rearrangement of the Igκ locus is regulated during B-cell development, very little is known about the way the variable (V) segments themselves are selected. Using B6/Cast hybrid pre-B cell clones, we show that a limited number of V segments on each allele is stochastically activated as characterized by the appearance of ncRNA and histone modifications. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL17021 GPL16417 GPL19057 32 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380816 Series Accession: GSE97148 ID: 200097148 3065. Gene bivalency at Polycomb domains regulates cranial neural crest positional identity [ATAC-seq] (Submitter supplied) The cranial neural crest cells are pluripotent cells that provide head skeletogenic mesenchyme and are crucial for craniofacial patterning. Here, we analyzed the in vivo chromatin landscapes of mouse cranial neural crest subpopulations. Early postmigratory neural crest subpopulations contributing to distinct mouse craniofacial structures displayed similar chromatin accessibility patterns, yet differed transcriptionally. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 14 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89436/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352306 Series Accession: GSE89436 ID: 200089436 3066. Conserved roles for murine mDUX and human DUX4 in activating cleavage stage genes and MERVL/HERVL retrotransposons [ATAC-Seq] (Submitter supplied) To better understand transcriptional regulation during human oogenesis and pre-implantation embryonic development, we defined stage-specific transcription, which revealed cleavage stage as highly distinctive. We present multiple lines of evidence that two cleavage-specific homologs, mouse mDUX and human DUX4, each activate hundreds of cleavage-specific endogenous genes (e.g. ZSCAN4, ZFP352, KDM4E) and retroviral elements (MERVL/HERVL-family). more... Organism: Mus musculus Type: Other Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA338975 Series Accession: GSE85624 ID: 200085624 3067. Wounds That Never Heal? Stem Cell Lineage Infidelity at the Crossroads of Wound-Repair and Cancer (Submitter supplied) Tissue stem cells govern tissue regeneration and wound-repair. Tumors often hijack these normal cellular programs and exploit them for malignancy. Here, we identify such a phenomenon in skin, where stem cells of the epidermis and hair follicle remain faithfully restricted to fueling their own tissue during homeostasis. They lose lineage fidelity during tumorigenesis. Moreover, breakdown of stem cell lineage confinement – granting privileges associated with both fates – is not only a hallmark, but also obligatory for malignancy. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL9185 25 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354299 Series Accession: GSE89928 ID: 200089928 3068. Transcription and chromatin profiling in differentiating THP-1 monocytes and THP-1 derived macrophages (Submitter supplied) Here we profile nascent transcription, RNA polymerase III occupancy, chromatin accessibility, and H3K27ac levels in THP-1 monocytes and THP-1 derived macrophages after 72 hr exposure to phorbol myristate acetate (PMA). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL16791 40 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA379744 Series Accession: GSE96800 ID: 200096800 3069. Flicr, a long noncoding RNA modulating Foxp3 expression and autoimmunity (ATAC-Seq) (Submitter supplied) ATAC-seq profiles of Tregs isolated from spleen and LN in Flicr WT and KO mice Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE97nnn/GSE97085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380648 Series Accession: GSE97085 ID: 200097085 3070. Histone gene replacement reveals a post-transcriptional role for H3K36 in maintaining metazoan transcriptome fidelity (Submitter supplied) To study the function of this residue independent from the enzymes that modify it, we used a “histone replacement” system in Drosophila to generate a non-modifiable H3K36 lysine-to-arginine (H3K36R) mutant. Post-translational modification of histone H3K36 is neither required to suppress cryptic transcription initiation nor to include alternative exons in Drosophila; instead it promotes expression of active genes by stimulating polyadenylation. Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19132 GPL16479 GPL13304 52 Samples FTP download: GEO (BED, BW, DIFF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE96nnn/GSE96922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA380106 Series Accession: GSE96922 ID: 200096922 3071. Open chromatin profiling of human postmortem brain infers functional roles for non-coding schizophrenia loci (Submitter supplied) Open chromatin provides access to DNA binding proteins for the correct spatiotemporal regulation of gene expression. Mapping chromatin accessibility has been widely used to identify the location of cis regulatory elements (CREs) including promoters and enhancers. CREs show tissue- and cell-type specificity and disease-associated variants are often enriched for CREs in the tissues and cells that pertain to a given disease. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA325645 Series Accession: GSE83345 ID: 200083345 3072. Genome-wide maps of chromatin state and chromatin accessibility in CD8 T cell subsets (Submitter supplied) To understand epigenetic mechanisms underlying CD8 T cell differentiation, we performed ChIP-seq of 4 histone modifications (H3K4me1, H3K4me3, H3K27ac, H3K27me3) and ATAC-seq to probe chromatin states and accessibility. We identified subset-specific regulatory elements (enhancers and promoters) from chromatin states and predicted key transcription factors from accessible regulatory regions using ATAC-seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 40 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA376705 Series Accession: GSE95237 ID: 200095237 3073. High activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Third-party reanalysis Platform: GPL13112 23 Samples FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE88nnn/GSE88702/ Series Accession: GSE88702 ID: 200088702 3074. High activity of a broad panel of housekeeping and tissue-specific cis-regulatory elements depends on a subset of ETS proteins (Submitter supplied) The genomic repertoire of enhancers and promoters that control the transcriptional output of terminally differentiated cells includes cell type-specific and housekeeping elements. Whether the constitutive activity of these two groups of cis-regulatory elements relies on entirely distinct or instead shared regulators is unknown. By dissecting the cis-regulatory repertoire of macrophages, we found that the ELF subfamily of ETS proteins selectively bound within 60 bp from the transcription start sites of highly active housekeeping genes. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL13112 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE88nnn/GSE88698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA348391 Series Accession: GSE88698 ID: 200088698 3075. The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL19057 81 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87822/ Series Accession: GSE87822 ID: 200087822 3076. The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells [RNA-Seq] (Submitter supplied) Pioneer transcription factors are able to recognise and bind their motif sequences in inaccessible or closed chromatin, and their ability to achieve this is required to establish new regulatory elements and transcriptional networks during development and cellular reprogramming. An essential feature of this pioneering activity is the transition from inaccessible chromatin to a nucleosome-depleted and accessible chromatin state typical of normal regulatory elements, and this is believed to facilitate further transcription factor binding events. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA347884 Series Accession: GSE87821 ID: 200087821 3077. The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells [ChIP-Seq] (Submitter supplied) Pioneer transcription factors are able to recognise and bind their motif sequences in inaccessible or closed chromatin, and their ability to achieve this is required to establish new regulatory elements and transcriptional networks during development and cellular reprogramming. An essential feature of this pioneering activity is the transition from inaccessible chromatin to a nucleosome-depleted and accessible chromatin state typical of normal regulatory elements, and this is believed to facilitate further transcription factor binding events. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 56 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87820/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA347885 Series Accession: GSE87820 ID: 200087820 3078. The pioneer factor OCT4 requires the chromatin remodeller BRG1 to support gene regulatory element function in mouse embryonic stem cells [ATAC-Seq] (Submitter supplied) Pioneer transcription factors are able to recognise and bind their motif sequences in inaccessible or closed chromatin, and their ability to achieve this is required to establish new regulatory elements and transcriptional networks during development and cellular reprogramming. An essential feature of this pioneering activity is the transition from inaccessible chromatin to a nucleosome-depleted and accessible chromatin state typical of normal regulatory elements, and this is believed to facilitate further transcription factor binding events. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 13 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA347886 Series Accession: GSE87819 ID: 200087819 3079. Toxoplasma gondii remodels the cis-regulatory landscape of infected human host cells [ATAC-seq] (Submitter supplied) To identify the open chromatin cis-regulatory elements present in uninfected and T. gondii (Type I-RH) infected HFFs. Organism: Homo sapiens Type: Other Platform: GPL16791 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA316437 Series Accession: GSE79609 ID: 200079609 3080. Whole genome developmental time course of Tn5 transposon accessible chromatin patterns in sea urchin embryos (Submitter supplied) We have adapted ATAC-seq to sea urchin embryos. As a proof of concept, we documented strong ATAC-seq signals over the locations of a number of previously authenticated, developmentally active, cell type specific cis-regulatory modules. We then used the method to generate a systematic developmental series for embryos from three independent batches, obtained every six hours from blastula stage until completion of embryogenesis at 72h. more... Organism: Strongylocentrotus purpuratus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL20965 21 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE95nnn/GSE95651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA377768 Series Accession: GSE95651 ID: 200095651 3081. TOP2 synergizes with BAF chromatin remodeling for both resolutions and formation of facultative heterochromatin (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL13112 20 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94041/ Series Accession: GSE94041 ID: 200094041 3082. TOP2 synergizes with BAF chromatin remodeling for resolution of facultative heterochromatin (Submitter supplied) Resolution and formation of facultative heterochromatin is essential to development, reprogramming, and oncogenesis. The mechanisms underlying these changes are poorly understood due to difficulty with interrogating heterochromatin dynamics and structure in vivo. BAF (mSWI/SNF) ATP-dependent chromatin remodeling complexes are known to promote chromatin accessibility. As the function of topoisomerase IIa (TOP2A) is largely dependent on BAF complexes in embryonic stem (ES) cells, we tested whether TOP2 was involved in BAF-mediated resolution of heterochromatin by performing ATAC-seq on ES cells treated with the TOP2 inhibitor ICRF-193, Brg1 (the primary ATPase subunit of esBAF complexes) conditional knockout cells, and Baf53a (a non-catalytic subunit dispensable for in vitro remodeling) conditional knockout cells. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 18 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA368641 Series Accession: GSE94039 ID: 200094039 3083. Regulation of KMT2D by PI(3)K/AKT signalling orchestrates oestrogen receptor mediated transcriptional activation in breast cancer [ATAC-seq] (Submitter supplied) We aim to elucidate the mechanisms of how PI3K inhibition is promoting oestrogen receptor (ER) activation and ER dependency in breast cancer. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA329526 Series Accession: GSE84515 ID: 200084515 3084. Exhaustion-associated regulatory regions in CD8+ tumor-infiltrating T cells (ATAC-seq for in-vivo experiments) (Submitter supplied) T cell exhaustion is a progressive loss of effector function and memory potential due to persistent antigen exposure, which occurs in chronic viral infections and cancer. Here we investigate the relation between gene expression and chromatin accessibility in CD8+ tumor-infiltrating lymphocytes (TIL) that recognize a model tumor antigen and have features of both activation and functional exhaustion. By filtering out accessible regions observed in bystander, non-exhausted, TIL and in acutely restimulated CD8+ T cells, we define a pattern of chromatin accessibility specific for T cell exhaustion, characterized by enrichment for consensus binding motifs for Nr4a and NFAT transcription factors. Anti-PD-L1 treatment of tumor-bearing mice results in cessation of tumor growth and partial rescue of cytokine production by the dysfunctional TIL, with only limited changes in gene expression and chromatin accessibility. Our studies provide a valuable resource for the molecular understanding of T cell exhaustion in cancer and other inflammatory settings. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA359374 Series Accession: GSE93013 ID: 200093013 3085. Exhaustion-associated regulatory regions in CD8+ tumor-infiltrating T cells (ATAC-seq for in-vitro experiments) (Submitter supplied) T cell exhaustion is a progressive loss of effector function and memory potential due to persistent antigen exposure, which occurs in chronic viral infections and cancer. Here we investigate the relation between gene expression and chromatin accessibility in CD8+ tumor-infiltrating lymphocytes (TIL) that recognize a model tumor antigen and have features of both activation and functional exhaustion. By filtering out accessible regions observed in bystander, non-exhausted, TIL and in acutely restimulated CD8+ T cells, we define a pattern of chromatin accessibility specific for T cell exhaustion, characterized by enrichment for consensus binding motifs for Nr4a and NFAT transcription factors. Anti-PD-L1 treatment of tumor-bearing mice results in cessation of tumor growth and partial rescue of cytokine production by the dysfunctional TIL, with only limited changes in gene expression and chromatin accessibility. Our studies provide a valuable resource for the molecular understanding of T cell exhaustion in cancer and other inflammatory settings. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA359351 Series Accession: GSE93001 ID: 200093001 3086. OTX2 activity at distal regulatory elements shapes the chromatin landscape of Group 3 medulloblastoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 107 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92585/ Series Accession: GSE92585 ID: 200092585 3087. OTX2 activity at distal regulatory elements shapes the chromatin landscape of Group 3 medulloblastoma [ATAC-seq] (Submitter supplied) Medulloblastoma is the most frequent malignant pediatric brain tumor and is divided into at least four subgroups known as Wnt, SHH, Group 3 and Group 4. Here we characterized gene regulation mechanisms in the most aggressive subtype, Group 3 tumors, through genome-wide chromatin and expression profiling. Our results show that most active distal sites in these tumors are occupied by the transcription factor OTX2. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA358124 Series Accession: GSE92584 ID: 200092584 3088. The non-coding variant rs1800734 enhances DCLK3 expression through long-range interaction and promotes colorectal cancer progression (Submitter supplied) Genome-wide association studies (GWAS) have identified a great number of non-coding risk variants for colorectal cancer (CRC). To date, the majority of these variants have not been functionally studied. Identification of allele-specific transcription factor (TF) binding is of great importance to understand regulatory consequences of such variants. A recently developed proteome-wide analysis of disease-associated SNPs (PWAS) enables identification of DNA-TF interactions in an unbiased fashion. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other Platforms: GPL11154 GPL18573 39 Samples FTP download: GEO (BEDGRAPH, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA327574 Series Accession: GSE83968 ID: 200083968 3089. ATAC-seq and RNA-seq of adult mouse rods and cones (Submitter supplied) Rod photoreceptors are specialized neurons that mediate vision in dim light and are the predominant photoreceptor type in nocturnal mammals. The rods of nocturnal mammals are unique among vertebrate cell types in having an 'inverted' nuclear architecture, with a single dense mass of heterochromatin in the center of the nucleus rather than dispersed clumps at the nuclear periphery. We hypothesized that this unique chromatin organization would correlate with a unique epigenomic landscape as defined by chromatin accessibility. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 14 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA325538 Series Accession: GSE83312 ID: 200083312 3090. Genetic analysis of Ikaros target genes and tumor suppressor function in BCR-ABL1+ pre-B ALL [ATAC-Seq] (Submitter supplied) Using patient-derived Ph+ pre-B ALL cells that harbor deletions of the IKZF1 DNA binding domain (Ik6), we performed ATAC-sequencing in cells that inducibly express wild-type Ikaros (Ik1) or an empty vector control. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 2 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA355312 Series Accession: GSE90666 ID: 200090666 3091. ATAC-seq from dendritic cell (ENCSR984HFU) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94226/ Series Accession: GSE94226 ID: 200094226 3092. ATAC-seq from dendritic cell (ENCSR940QJU) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94222/ Series Accession: GSE94222 ID: 200094222 3093. ATAC-seq from dendritic cell (ENCSR939XWM) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94221/ Series Accession: GSE94221 ID: 200094221 3094. ATAC-seq from dendritic cell (ENCSR926TFY) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94220/ Series Accession: GSE94220 ID: 200094220 3095. ATAC-seq from dendritic cell (ENCSR926GDT) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94219/ Series Accession: GSE94219 ID: 200094219 3096. ATAC-seq from dendritic cell (ENCSR904UKR) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94217/ Series Accession: GSE94217 ID: 200094217 3097. ATAC-seq from dendritic cell (ENCSR901IEQ) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94216/ Series Accession: GSE94216 ID: 200094216 3098. ATAC-seq from dendritic cell (ENCSR787YJK) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94212/ Series Accession: GSE94212 ID: 200094212 3099. ATAC-seq from dendritic cell (ENCSR780HBP) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94211/ Series Accession: GSE94211 ID: 200094211 3100. ATAC-seq from dendritic cell (ENCSR679NRJ) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94206/ Series Accession: GSE94206 ID: 200094206 3101. ATAC-seq from dendritic cell (ENCSR648JJT) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94202/ Series Accession: GSE94202 ID: 200094202 3102. ATAC-seq from dendritic cell (ENCSR628SXX) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94201/ Series Accession: GSE94201 ID: 200094201 3103. ATAC-seq from dendritic cell (ENCSR605EGR) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94200/ Series Accession: GSE94200 ID: 200094200 3104. ATAC-seq from dendritic cell (ENCSR589ROM) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94198/ Series Accession: GSE94198 ID: 200094198 3105. ATAC-seq from dendritic cell (ENCSR566LZT) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94196/ Series Accession: GSE94196 ID: 200094196 3106. ATAC-seq from dendritic cell (ENCSR544YXV) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94195/ Series Accession: GSE94195 ID: 200094195 3107. ATAC-seq from dendritic cell (ENCSR535NOD) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94193/ Series Accession: GSE94193 ID: 200094193 3108. ATAC-seq from dendritic cell (ENCSR459AYS) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94187/ Series Accession: GSE94187 ID: 200094187 3109. ATAC-seq from dendritic cell (ENCSR370QWN) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94182/ Series Accession: GSE94182 ID: 200094182 3110. ATAC-seq from dendritic cell (ENCSR347RZI) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94181/ Series Accession: GSE94181 ID: 200094181 3111. ATAC-seq from dendritic cell (ENCSR329XFZ) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94179/ Series Accession: GSE94179 ID: 200094179 3112. ATAC-seq from dendritic cell (ENCSR290AUK) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94178/ Series Accession: GSE94178 ID: 200094178 3113. ATAC-seq from dendritic cell (ENCSR237VSF) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94177/ Series Accession: GSE94177 ID: 200094177 3114. ATAC-seq from dendritic cell (ENCSR222SCA) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94175/ Series Accession: GSE94175 ID: 200094175 3115. ATAC-seq from dendritic cell (ENCSR208NBF) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94174/ Series Accession: GSE94174 ID: 200094174 3116. ATAC-seq from dendritic cell (ENCSR204FCV) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94173/ Series Accession: GSE94173 ID: 200094173 3117. ATAC-seq from dendritic cell (ENCSR156FDX) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94170/ Series Accession: GSE94170 ID: 200094170 3118. ATAC-seq from dendritic cell (ENCSR131CHJ) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94168/ Series Accession: GSE94168 ID: 200094168 3119. ATAC-seq from dendritic cell (ENCSR116SPR) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94167/ Series Accession: GSE94167 ID: 200094167 3120. ATAC-seq from dendritic cell (ENCSR059IHA) (Submitter supplied) ATAC-seq For data usage terms and conditions, please refer to http://www.genome.gov/27528022 and http://www.genome.gov/Pages/Research/ENCODE/ENCODE_Data_Use_Policy_for_External_Users_03-07-14.pdf Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 1 Sample FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94163/ Series Accession: GSE94163 ID: 200094163 3121. Changes in chromatin accessibility assocaiated with CD8 T cell responses to viral infections (Submitter supplied) The goal of this study was to identify the molecular programming using ATAC-seq of CD8 T cells responding to different viral infections. Mice were infected with either LCMV Armstrong to model an acute infection or LCMV Clone-13 to model a chronic infection. At various time points following infection, virus-specific CD8 T cells were purified and ATAC-seq performed. These data identify the changes in chromatin accessibility associated with acute infections and the establishment of functional memory versus those accessibility changes associated with chronic infection. Organism: Mus musculus Type: Other Platform: GPL17021 17 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA325011 Series Accession: GSE83081 ID: 200083081 3122. Eomes related gene regulation in Definitive Endoderm (ATAC-seq) (Submitter supplied) Precisely co-ordinated activation of lineage specific transcription factors direct cell fate decisions during mouse early development. The T-box transcription factor Eomes is dynamically expressed during mouse gastrulation and is a key regulator of the anterior visceral endoderm (AVE), cardiac mesoderm and definitive endoderm (DE) lineages. The cis-acting regulatory elements that direct spatiotemporally restricted Eomes expression domains have yet to be elucidated. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA369204 Series Accession: GSE94249 ID: 200094249 3123. Eomes related gene regulation in Definitive Endoderm (NG Capture-C) (Submitter supplied) Precisely co-ordinated activation of lineage specific transcription factors direct cell fate decisions during mouse early development. The T-box transcription factor Eomes is dynamically expressed during mouse gastrulation and is a key regulator of the anterior visceral endoderm (AVE), cardiac mesoderm and definitive endoderm (DE) lineages. The cis-acting regulatory elements that direct spatiotemporally restricted Eomes expression domains have yet to be elucidated. more... Organism: Mus musculus Type: Other Platform: GPL19057 18 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA369203 Series Accession: GSE94051 ID: 200094051 3124. Eomes related gene regulation in Definitive Endoderm (ChIP-seq) (Submitter supplied) Precisely co-ordinated activation of lineage specific transcription factors direct cell fate decisions during mouse early development. The T-box transcription factor Eomes is dynamically expressed during mouse gastrulation and is a key regulator of the anterior visceral endoderm (AVE), cardiac mesoderm and definitive endoderm (DE) lineages. The cis-acting regulatory elements that direct spatiotemporally restricted Eomes expression domains have yet to be elucidated. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE94nnn/GSE94048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA369202 Series Accession: GSE94048 ID: 200094048 3125. Critical role of the transcription factors IRF1 and BATF in preparing the chromatin landscape during Type 1 regulatory cell differentiation [ATAC-seq] (Submitter supplied) Type 1 regulatory T (Tr1) cells are induced by interleukin-27 (IL-27) and have critical roles in the control of autoimmunity and resolution of inflammation. Here, we show that the transcription factors IRF1 and BATF are induced early during treatment with IL-27 and are required for the differentiation and function of Tr1 cells in vitro and in vivo. Epigenetic and transcriptional analyses reveal that both transcription factors influence chromatin accessibility and expression of genes required for Tr1 cell function. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 38 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA359391 Series Accession: GSE92993 ID: 200092993 3126. Mapping cell type-specific transcriptional enhancers using high affinity, lineage-specific p300 bioChIP-seq (Submitter supplied) We report a method for high throughput mapping of transcriptional enhancers, genomic regulatory regions that activate lineage-specific transcription. Since tissue-specific enhancers are bound by the transcriptional co-activator p300, we developed murine knock-in alleles that permit Cre-dependent, lineage-specific p300 in vivo biotinylation and high affinity pulldown on immobilized streptavidin. Subsequent next generation sequencing of p300-bound genomic DNA identified lineage-specific enhancers. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL13112 GPL17021 40 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE88nnn/GSE88789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA348551 Series Accession: GSE88789 ID: 200088789 3127. Aire, guardian of immunological tolerance, binds to and activates super-enhancers [ATAC-seq] (Submitter supplied) ATAC-seq profiles of MECs and earskin fibroblasts Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA358090 Series Accession: GSE92594 ID: 200092594 3128. RNA-Seq and ATAC-Seq in SMARCD2 k/d NB4 cells with/without ATRA differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93878/ Series Accession: GSE93878 ID: 200093878 3129. Genome wide DNA accessibility screen by ATAC-Seq in SMARCD2 k/d NB4 cells with/without ATRA differentiation (Submitter supplied) We report differential chromatin accessiblity in the human AML cell line NB4 that can be partially differentiated into neutrophil granulocytes by 1µM ATRA for 2d or the vehicle DMSO only ((mock)) Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA362640 Series Accession: GSE93876 ID: 200093876 3130. ATAC-seq of Chd7 WT and mutant cerebellar granule neuron progenitors (Submitter supplied) We performed ATAC-seq to profile the open chromatin lanscape in primary Chd7 WT and mutant GNPs. By analyzing the differentiate peaks between WT and mutant, we identified Chd7-dependent maintance of open chromatin at many neuronal genes. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA309175 Series Accession: GSE76984 ID: 200076984 3131. Essential role of the transcription factor Bhlhe41 in regulating the self-renewal and BCR repertoire of B-1a cells (Submitter supplied) The innate-like B-1a cells provide a first line of defense against pathogens, and yet little is known about their transcriptional control. Here we identified an essential role of the transcription factor Bhlhe41, with a lesser contribution of Bhlhe40, in controlling late stages of B-1a cell differentiation. Bhlhe41/Bhlhe40 mutant B-1a cells were strongly reduced and had an abnormal cell-surface phenotype and altered B-cell receptor (BCR) repertoire, as exemplified by loss of the phosphatidylcholine-specific Vh12/Vk4 BCR. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL13112 GPL11002 GPL17021 23 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE93nnn/GSE93764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA362312 Series Accession: GSE93764 ID: 200093764 3132. Cooperative binding of Oct4, Sox2, and Klf4 with stage-specific transcription factors orchestrates reprogramming [ATAC-seq] (Submitter supplied) Oct4, Sox2, Klf4, and cMyc (OSKM) reprogram somatic cells to pluripotency. To gain a mechanistic understanding of their function, we mapped OSKM-binding, stage-specific transcription-factors (TFs), and chromatin-states in discrete reprogramming stages and performed loss- and gain-of-function experiments. We found that early in reprogramming OSK extensively bind somatic-enhancers and initiate their decommissioning by recruiting Hdac1. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL9185 9 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA356293 Series Accession: GSE90892 ID: 200090892 3133. Mammalian sperm exhibit epigenetic priming of embryonic and adult regulatory landscapes (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Other Platform: GPL13112 33 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79230/ Series Accession: GSE79230 ID: 200079230 3134. Mammalian sperm exhibit epigenetic priming of embryonic and adult regulatory landscapes (ATAC-Seq) (Submitter supplied) The mammalian sperm genome is generally thought to be condensed and transcriptionally inert. Here we show that most promoters in mouse sperm contain elongating RNA polymerase II and are flanked by several positioned nucleosomes marked by a variety of active histone modifications. The sperm genome is bound by several transcription factors, including Nanog, Oct4, Mediator, condensin, and the pioneer factor FoxA1. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 3 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79225/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA315208 Series Accession: GSE79225 ID: 200079225 3135. Neuronal activity modifies the chromatin accessibility landscape in the adult brain (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL13112 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86367/ Series Accession: GSE86367 ID: 200086367 3136. Neuronal activity modifies the chromatin accessibility landscape in the adult brain (ATAC-Seq) (Submitter supplied) We generated the chromatin accessibility profiling datasets from adult mouse dentate gyrus upon neuronal activation at 3 different time points Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 3 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA341514 Series Accession: GSE86365 ID: 200086365 3137. Neuronal activity modifies the chromatin accessibility landscape in the adult brain (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL19057 GPL13112 56 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82015/ Series Accession: GSE82015 ID: 200082015 3138. Neuronal activity modifies the chromatin accessibility landscape in the adult brain (ATAC-Seq KD) (Submitter supplied) We generated the chromatin accessibility profiling datasets from adult mouse dentate gyrus with cFos knockdown upon neuronal activation (E0 and E1) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 11 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA323622 Series Accession: GSE82012 ID: 200082012 3139. Neuronal activity modifies the chromatin accessibility landscape in the adult brain (ATAC-Seq OE) (Submitter supplied) We generated the chromatin accessibility profiling datasets from adult mouse dentate gyrus with cFos knockdown and overexpression upon neuronal activation (E0 and E1) Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA323616 Series Accession: GSE82011 ID: 200082011 3140. Neuronal activity modifies the chromatin accessibility landscape in the adult brain (ATAC-Seq WT) (Submitter supplied) We generated the chromatin accessibility profiling datasets from adult mouse dentate gyrus upon neuronal activation at 3 different time points Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA323613 Series Accession: GSE82010 ID: 200082010 3141. BTBD18 licenses piRNA-generating loci to support mouse germ cell development (Submitter supplied) PIWI-interacting RNAs (piRNAs) are small non-coding RNAs essential for animal germ cell development. Despite intense investigation of post-transcriptional processing, piRNA biogenesis at the chromatin level remains enigmatic. Here we document that BTBD18 is a pachytene nuclear protein in mouse testes that occupies intergenic pachytene piRNA-producing loci with remarkable genome-wide specificity. Deficiency of Btbd18 in mice results in disrupted piRNA biogenesis and male sterility. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other; Non-coding RNA profiling by high throughput sequencing Platform: GPL17021 86 Samples FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA321732 Series Accession: GSE81470 ID: 200081470 3142. Layer-specific ATAC-seq of the neurons of adult mouse visual cortex defined by Cre-driver lines (Submitter supplied) Mammalian cortex is a laminar structure, with each layer composed of a characteristic set of cell types with different morphological, electrophysiological, and connectional properties. Here, we define chromatin accessibility landscapes of major, layer-specific excitatory classes of neurons, and compare them to each other and to inhibitory cortical neurons using the Assay for Transposase-Accessible Chromatin with high-throughput sequencing (ATAC-seq). more... Organism: Mus musculus Type: Other Platforms: GPL17021 GPL16417 20 Samples FTP download: GEO (BED, BROADPEAK, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA345167 Series Accession: GSE87548 ID: 200087548 3143. Variable chromatin structure revealed by in situ spatially correlated DNA cleavage mapping (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL15520 37 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81807/ Series Accession: GSE81807 ID: 200081807 3144. Variable chromatin secondary structures in live cells revealed by radiation-induced spatially correlated DNA cleavage mapping [RICC-Seq] (Submitter supplied) Chromatin structure at the length scale encompassing nucleosome-nucleosome interactions is thought to play a crucial role in regulating transcription and access to DNA. However, this chromatin secondary structure remains poorly understood compared to the primary structure of single nucleosomes or the tertiary structure of long-range looping interactions. Here we report the first genome-wide map of chromatin conformation in human cells at the 1-3 nucleosome (50-500 bp) scale, obtained using ionizing radiation-induced spatially correlated cleavage of DNA with sequencing (RICC-seq). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL15520 GPL16791 29 Samples FTP download: GEO (BW, DAT, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA322621 Series Accession: GSE81806 ID: 200081806 3145. Variable chromatin secondary structures in live cells revealed by radiation-induced spatially correlated DNA cleavage mapping [ATAC-Seq] (Submitter supplied) Chromatin structure at the length scale encompassing nucleosome-nucleosome interactions is thought to play a crucial role in regulating transcription and access to DNA. However, this chromatin secondary structure remains poorly understood compared to the primary structure of single nucleosomes or the tertiary structure of long-range looping interactions. Here we report the first genome-wide map of chromatin conformation in human cells at the 1-3 nucleosome (50-500 bp) scale, obtained using ionizing radiation-induced spatially correlated cleavage of DNA with sequencing (RICC-seq). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 8 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA322456 Series Accession: GSE81736 ID: 200081736 3146. Universal correction of enzymatic sequence bias (Submitter supplied) Coupling molecular biology to high throughput sequencing has revolutionized the study of biology. Molecular genomics techniques are continually refined to provide higher resolution mapping of nucleic acid interactions and nucleic acid structure. These assays are converging on single-nucleotide resolution measurements, but the sequence preferences of molecular biology enzymes can interfere with the accurate interpretation of the data. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE92nnn/GSE92674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA358315 Series Accession: GSE92674 ID: 200092674 3147. Clonal conversion of B-lymphoid leukemia reveals cross-lineage transfer of malignant states. (Submitter supplied) Even though leukemia is considered as confined to one specific hematopoietic cell type, cases of acute leukemia of ambiguous lineage and patients relapsing in phenotypically altered disease suggest that a malignant state may be transferred between lineages. Because B-cell leukemia is associated with mutations in transcription factors of importance for stable preservation of lineage identity we here investigated the potential lineage plasticity of leukemic cells. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 85 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA355290 Series Accession: GSE90655 ID: 200090655 3148. Cdx and T Brachyury co-activate growth signaling in the embryonic axial progenitor niche. (Submitter supplied) In vertebrate embryos, anterior tissues are generated early, followed by the other axial structures that emerge sequentially from a posterior growth zone. The genetic network driving posterior axial elongation in mice, and its disturbance in mutants with posterior truncation are not yet fully understood. We show that the combined expression of Cdx2 and T Brachyury is essential to establish the core signature of posterior axial progenitors. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL19057 55 Samples FTP download: GEO (BED, BW, CSV, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA335589 Series Accession: GSE84899 ID: 200084899 3149. Identification of Breast Cancer Associated Variants That Modulate Transcription Factor Binding (Submitter supplied) GWAS have discovered thousands of genomic loci that are associated with disease risk and quantitative traits, but most of the variants responsible for risk remain uncharacterized. The vast majority of GWAS-identified loci contain non-coding SNPs and defining molecular mechanism of risk is challenging. Many non-coding causal SNPs are hypothesized to alter Transcription Factor (TF) binding sites as the mechanism by which they affect organismal phenotypes. more... Organism: Homo sapiens Type: Other Platform: GPL18573 5 Samples FTP download: GEO (BED, BEDGRAPH, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA349763 Series Accession: GSE89013 ID: 200089013 3150. Disease Model of GATA4 Mutation Reveals Transcription Factor Cooperativity in Human Cardiogenesis [ATAC-Seq] (Submitter supplied) Heterozygous mutations in GATA4 cause congenital heart defects and cardiomyopathy through unknown mechanisms. To gain insights into the open chromatin status during human cardiac development due to GATA4 heterozygosity, we performed ATAC-seq of wildtype and GATA4-G296S diseased cardiac progenitors. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA339029 Series Accession: GSE85630 ID: 200085630 3151. MNase-sensitive complexes in yeast: nucleosomes and non-histone barriers (Submitter supplied) Micrococcal nuclease (MNase) is commonly used to map nucleosomes genome-wide, but nucleosome maps are affected by the degree of digestion. It has been proposed that many yeast promoters are not nucleosome-free but occupied by easily digested, unstable, “fragile” nucleosomes. We analyzed the histone content of all MNase-sensitive complexes by MNase-ChIP-seq and Sonication-ChIP-seq. We find that yeast promoters are predominantly bound by non-histone protein complexes, with little evidence for fragile nucleosomes. more... Organism: Saccharomyces cerevisiae Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13821 26 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA324842 Series Accession: GSE83123 ID: 200083123 3152. Dynamic changes in chromatin accessibility in CD8+ T cells responding to viral infection (Submitter supplied) In response to acute infection, naive CD8+ T cells expand, differentiate into effector cells and then contract to a long-lived pool of memory cells after pathogen clearance. During chronic infections or in tumors, CD8+ T cells acquire an “exhausted” phenotype. Here we present genome-wide comparisons of chromatin accessibility and gene expression from endogenous CD8+ T cells responding to acute and chronic viral infection using ATAC-seq and RNA-seq. more... Organism: Mus musculus Type: Other; Expression profiling by high throughput sequencing Platform: GPL17021 44 Samples FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE88nnn/GSE88987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA349462 Series Accession: GSE88987 ID: 200088987 3153. Chromatin immunoprecipitation and ATAC-Seq data from meduallar thymic epithelial cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90050/ Series Accession: GSE90050 ID: 200090050 3154. Chromatin immunoprecipitation and ATAC-Seq data from meduallar thymic epithelial cells [ChIP-Seq] (Submitter supplied) Aire is a transcriptional regulator that induces promiscuous expression of thousands of tissue-restricted antigen (TRA) genes in medullary thymic epithelial cells (mTECs). While the target genes of Aire are well characterized, the transcriptional programs regulating its own expression remain elusive. We used Affymetrix microarrays to analyze the gene expression patterns of Aire expressing cells (mature mTECs and Thymic B cells) and compared them to control counterparts, namely immature mTECs, cortical Thymic epithelial cells and splenic B cells of tissue-restricted antigen (TRA) genes in medullary thymic epithelial cells (mTECs). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 2 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90049/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354552 Series Accession: GSE90049 ID: 200090049 3155. Chromatin immunoprecipitation and ATAC-Seq data from meduallar thymic epithelial cells [ATAC-Seq] (Submitter supplied) Aire is a transcriptional regulator that induces promiscuous expression of thousands of tissue-restricted antigen (TRA) genes in medullary thymic epithelial cells (mTECs). While the target genes of Aire are well characterized, the transcriptional programs regulating its own expression remain elusive. We used Affymetrix microarrays to analyze the gene expression patterns of Aire expressing cells (mature mTECs and Thymic B cells) and compared them to control counterparts, namely immature mTECs, cortical Thymic epithelial cells and splenic B cells of tissue-restricted antigen (TRA) genes in medullary thymic epithelial cells (mTECs). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 6 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE90nnn/GSE90048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA354553 Series Accession: GSE90048 ID: 200090048 3156. Single-cell epigenomic variability reveals functional cancer heterogeneity (Submitter supplied) Background: Cell-to-cell heterogeneity is a major driver of cancer evolution, progression, and emergence of drug resistance. Epigenomic variation at the single-cell level can rapidly create cancer heterogeneity, but is difficult to detect and assess functionally. Results: We develop a strategy to bridge the gap between measurement and function in single-cell epigenomics. Using single-cell chromatin accessibility and RNA-seq data in K562 leukemic cells, we identify the cell surface marker CD24 as co-varying with chromatin accessibility changes linked to GATA transcription factors in single cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 12 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76224/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA306685 Series Accession: GSE76224 ID: 200076224 3157. A multi-step transcriptional and chromatin cascade underlies motor neuron programming (ATAC-Seq) (Submitter supplied) Direct programming via the overexpression of transcription factors (TFs) aims to control cell fate at a precision that will be instrumental for clinical applications. However, direct programming of terminal fates remains an obscure process. Taking advantage of the rapid and uniquely efficient programming of spinal motor neurons by overexpression of Ngn2, Isl1 and Lhx3, we have characterized gene expression, chromatin and transcription factor binding time-course dynamics during complete motor neuron programming. more... Organism: Mus musculus Type: Other Platform: GPL19057 4 Samples FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE80nnn/GSE80511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA319165 Series Accession: GSE80511 ID: 200080511 3158. A multi-step transcriptional and chromatin cascade underlies motor neuron programming (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platforms: GPL17021 GPL19057 887 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE80nnn/GSE80483/ Series Accession: GSE80483 ID: 200080483 3159. Dynamic enhancer landscape in postmitotic motor neurons (Submitter supplied) Generic spinal motor neuron identity is specified by cooperative binding of selector transcription factors to motor neuron specific enhancers. Whether these enhancers remain active to maintain the motor neuron expression program following downregulation of selector factors in maturing motor neurons remains unknown. We demonstrate that enhancers established by selector genes are highly transient during motor neuron differentiation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL13112 26 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA316174 Series Accession: GSE79561 ID: 200079561 3160. Tumor Interferon Signaling Regulates a Multigenic Resistance Program to Immune Checkpoint Blockade [ATAC-Seq] (Submitter supplied) The goal of this study is to investigate if interferon signaling regulates immune checkpoint blockade in mouse melanoma model. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 9 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA327210 Series Accession: GSE83847 ID: 200083847 3161. Combining ATAC-seq with nuclei sorting for discovery of cis-regulatory regions in plant genomes (Submitter supplied) Chromatin structure plays a pivotal role in facilitating proper control of gene expression. The ability of transcription factors (TF) to bind cis-elements is often associated with accessible chromatin regions. Therefore, identification of these accessible regions throughout plant genomes is important to understanding the relationship between TF binding, chromatin status and the regulation of gene expression. more... Organism: Zea mays subsp. mays; Arabidopsis thaliana Type: Other Platforms: GPL22285 GPL19580 14 Samples FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA336549 Series Accession: GSE85203 ID: 200085203 3162. Allele-specific ATAC-seq across 16 neural progenitor cell clones (Submitter supplied) The two copies of a gene are canonically believed to be indistinguishable to the cell and are expressed in the same spatiotemporal manner in the absence of a loss-of-function mutation.  The mechanisms by which cells break this symmetry and express a gene from only one of the two alleles of the diploid genome are of great interest.  Monoallelic gene expression on the X-chromosome, at imprinted genes, and at olfactory receptor genes has been studied in detail and involves combinations of non-coding RNAs, DNA methylation, and histone modifications. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL21103 GPL19057 18 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA330723 Series Accession: GSE84646 ID: 200084646 3163. Impact of the gut microbiota on enhancer accessibility in gut intraepithelial lymphocytes (Submitter supplied) The gut microbiota impacts many aspects of host biology including immune function. One hypothesis is that microbial communities induce epigenetic changes with accompanying alterations in chromatin accessibility, providing a mechanism that allows a community to have sustained host effects even in the face of its structural or functional variation. We used ATAC-seq to define chromatin accessibility in predicted enhancer regions of intestinal αβ+ and γδ+ intraepithelial lymphocytes (IELs) purified from germ-free mice, their conventionally-raised (CONV-R) counterparts, and mice reared GF and then colonized with a CONV-R gut microbiota at the end of the suckling-weaning transition. more... Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL19057 GPL17021 91 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE89nnn/GSE89646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA352791 Series Accession: GSE89646 ID: 200089646 3164. ATAC-seq analysis of chromatin accessibility and nucleosome positioning in Drosophila melanogaster precellular blastoderm embryos (Submitter supplied) Purpose: The goal of this study was to measure how chromatin accessibility and nucleosome positioning changes as embryos undergo the midblastula transition (MBT). Methods: Single or paired embryos were collected at three minute intervals over the three cell cycles leading up to the MBT (nuclear cycles 11, 12, and 13). Embryos were subjected to ATAC-seq library preparation following established protocols. more... Organism: Drosophila melanogaster Type: Other Platform: GPL17275 81 Samples FTP download: GEO (BED, BEDGRAPH, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83851/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA327205 Series Accession: GSE83851 ID: 200083851 3165. TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells (ATAC-Seq) (Submitter supplied) TET proteins oxidize 5-methylcytosine to 5-hydroxymethylcytosine and further oxidation products in DNA. Here we report that simultaneous deletion of Tet2 and Tet3 in mouse double-positive thymocytes resulted in dysregulated development and proliferation of invariant natural killer T (iNKT) cells. Tet2-Tet3-double-deficient (DKO) iNKT cells displayed pronounced skewing towards the NKT17 lineage, with increased DNA methylation and impaired expression of genes encoding the key lineage-specifying factors T-bet and ThPOK. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 6 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA339230 Series Accession: GSE85743 ID: 200085743 3166. TET proteins regulate lineage specification and TCR-mediated expansion of iNKT cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 54 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66834/ Series Accession: GSE66834 ID: 200066834 3167. Epigenome maps of time-resolved monocyte to macrophage differentiation and innate immune memory (ATAC-Seq) (Submitter supplied) Innate immune memory is the phenomenon whereby innate immune cells such as monocytes or macrophages undergo functional reprogramming after exposure to microbial components such as LPS. We apply an integrated epigenomic approach to characterize the molecular events involved in LPS-induced tolerance in a time dependent manner. ChIP-seq, RNA-seq, WGBS and ATAC-seq data were generated. This analysis identified epigenetic programs in tolerance and trained macrophages, and the potential transcription factors involved. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 13 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA343921 Series Accession: GSE87218 ID: 200087218 3168. Epigenome maps of time-resolved monocyte to macrophage differentiation and innate immune memory (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL18573 239 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85246/ Series Accession: GSE85246 ID: 200085246 3169. Epigenome maps of time-resolved monocyte to macrophage differentiation and innate immune memory (ChIP-Seq) (Submitter supplied) Innate immune memory is the phenomenon whereby innate immune cells such as monocytes or macrophages undergo functional reprogramming after exposure to microbial components such as LPS. We apply an integrated epigenomic approach to characterize the molecular events involved in LPS-induced tolerance in a time dependent manner. ChIP-seq, RNA-seq, WGBS and ATAC-seq data were generated. This analysis identified epigenetic programs in tolerance and trained macrophages, and the potential transcription factors involved. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 132 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA343285 Series Accession: GSE85245 ID: 200085245 3170. Epigenome maps of time-resolved monocyte to macrophage differentiation and innate immune memory (RNA-Seq) (Submitter supplied) Innate immune memory is the phenomenon whereby innate immune cells such as monocytes or macrophages undergo functional reprogramming after exposure to microbial components such as LPS. We apply an integrated epigenomic approach to characterize the molecular events involved in LPS-induced tolerance in a time dependent manner. ChIP-seq, RNA-seq, WGBS and ATAC-seq data were generated. This analysis identified epigenetic programs in tolerance and trained macrophages, and the potential transcription factors involved. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing Platform: GPL11154 94 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA343286 Series Accession: GSE85243 ID: 200085243 3171. Epigenetic Memory Underlies Cell Autonomous Heterogeneous Behavior of Hematopoietic Stem Cells (Submitter supplied) Stem cells determine homeostasis and repair of many tissues and are increasingly recognized as functionally heterogeneous. To define the extent of and molecular basis for heterogeneity we overlaid functional, transcriptional and epigenetic attributes of hematopoietic stem cells (HSCs) at a clonal level using endogenous fluorescent tagging. Endogenous HSC had clone-specific functional attributes in vivo. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 21 Samples FTP download: GEO (BED, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA345018 Series Accession: GSE87527 ID: 200087527 3172. Global accessibility of mitotic chromosomes (Submitter supplied) To test if mitotic chromosomes have decreased accessibility, we utilized Assay for Transposase-Accessible Chromatin using sequencing (ATAC-seq) analysis where the integration of sequencing-compatible adaptors by the Tn5 transposase is directly correlated with the accessibility of genomic regions Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA336477 Series Accession: GSE85184 ID: 200085184 3173. A Druggable TCF4- and BRD4-dependent Transcriptional Network Sustains Malignancy in Blastic Plasmacytoid Dendritic Cell Neoplasm (ATAC-Seq) (Submitter supplied) Blastic plasmacytoid dendritic cell neoplasm (BPDCN) is an aggressive and largely incurable hematologic malignancy originating from plasmacytoid dendritic cells (pDCs). Using RNA interference screening, we identified the E-box transcription factor TCF4 as a master regulator of the BPDCN oncogenic program. TCF4 served as a faithful diagnostic marker of BPDCN, and its downregulation caused the loss of the BPDCN-specific expression program and apoptosis. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 9 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA330681 Series Accession: GSE84623 ID: 200084623 3174. Small molecules modulate chromatin accessibility to promote NEUROG2-mediated fibroblast-to-neuron reprogramming [ATAC-seq] (Submitter supplied) Pro-neural transcription factors and small molecules can induce the transdifferentiation of fibroblasts into functional neurons; however, a molecular mechanism detailing the immediate-early events that catalyze this conversion has not been well defined. We previously demonstrated that NEUROG2, forskolin (F), and dorsomorphin (D) can induce functional neurons with high-efficiency. Here, we used this model to define the genetic and epigenetic events that initiate an acquisition of neuronal identity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE80nnn/GSE80639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA319558 Series Accession: GSE80639 ID: 200080639 3175. Small molecules modulate chromatin accessibility to promote NEUROG2-mediated fibroblast-to-neuron reprogramming (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 77 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75912/ Series Accession: GSE75912 ID: 200075912 3176. Epigenetic inflexibility of exhausted T cells limits durability of reinvigoration by PD-1 blockade (Submitter supplied) Upon PD-1 pathway blockade,the epigenetic landscape of exhausted cells was only minimally remodeled consistent with lineage commitment and re-exhaustion of these cells over time. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 10 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE86nnn/GSE86797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA342526 Series Accession: GSE86797 ID: 200086797 3177. The Epigenetic Landscape of T Cell Exhaustion (Submitter supplied) We used ATAC-Seq to define the accessible chromatin landscape in exhausted CD8+ T cells, showed that it is distinct from functional memory CD8+ T cells, and identified an exhaustion-specific enhancer of PD-1. In addition to the murine T cell data, we will provide the ATAC-Seq data used from human T cells in the paper. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE87nnn/GSE87646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA345479 Series Accession: GSE87646 ID: 200087646 3178. Local regulation of gene expression by lncRNA promoters, transcription, and splicing (Submitter supplied) Mammalian genomes are pervasively transcribed to produce thousands of spliced long noncoding RNAs (lncRNAs), whose functions remain poorly understood. Because recent evidence has implicated several specific lncRNA loci in the local regulation of gene expression, we sought to determine whether such local regulation is a property of many lncRNA loci. We used genetic manipulations to dissect 12 genomic loci that produce lncRNAs and found that 5 of these loci influence the expression of a neighboring gene in cis. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL17021 462 Samples FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA339437 Series Accession: GSE85798 ID: 200085798 3179. A tissue checkpoint regulates type 2 immunity (Submitter supplied) Innate pattern recognition receptors for conserved structural elements play critical roles in immunity against viruses, bacteria and fungi, but analogous pathways linking innate recognition of diverse allergens or helminths with type 2 immunity remain elusive. The discovery of group 2 innate lymphoid cells (ILC2s), which produce similar cytokines as CD4+ T helper 2 (Th2) cells1, has suggested models whereby ILC2s directly or indirectly induce adaptive Th2 cells,2-8 but current understanding of how these cells interact in tissue microenvironments to coordinate allergic immunity is limited. more... Organism: Mus musculus Type: Other Platform: GPL17021 15 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA317536 Series Accession: GSE79703 ID: 200079703 3180. ATAC-Seq to investigate the spatial choreography of the accessible genome (Submitter supplied) Understanding the spatial choreography of the acessible genome in the intact nucleus Organism: Homo sapiens Type: Other Platform: GPL18573 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA317466 Series Accession: GSE79921 ID: 200079921 3181. ATAC-Se1 to investigate the spatial choreography of the accessible genome (Submitter supplied) In order to completely understand the spatial choreography of the accessible genome in the 3D intact nucleus, we had developed a new technique termed assay of transposase accessible chromatin by visualization (ATAC-see). In brief, we had labeled the adaptor in hypersensitive Tn5 transposase with fluorophore dye and performed the Tn5 tagmentation on the fixed culture cells slide. We had performed ATAC-see in different types of cells and found out there are cell types specific spatial choreography of the accessible genome in the 3D intact nucleus, which is tightly linked to cell types specific function. more... Organism: Homo sapiens Type: Other Platform: GPL18573 22 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA305986 Series Accession: GSE76006 ID: 200076006 3182. ATACseq to determine chromatin accessibility in activated or Tfr-suppressed B cells (Submitter supplied) Tfh and B cells were cultured together with or without Tfr cells. After 4 days Tfh and B cells were sorted and prepared for ATAC-seq Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA323600 Series Accession: GSE82001 ID: 200082001 3183. Chromatin decompaction coupled MuERVL endogenous retrovirus activation induces genome-wide DNA demethylation (Submitter supplied) Mouse embryonic stem cells are heterogeneous and contain rare cells expressing transcripts normally upregulated in pre-implantation embryos, including the Zscan4 cluster and MuERVL endogenous retrovirus. Through single cell transcriptomics and genome-wide chromatin and DNA methylation analyses we uncover the dynamics of the regulation and epigenetic consequences of these transient cells. Transcriptional activation of MuERVL and Zscan4 coincided with a global increase in chromatin accessibility. more... Organism: Mus musculus Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 25 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA305313 Series Accession: GSE75751 ID: 200075751 3184. ATAC-Seq on DNA damaged human fibroblasts (Submitter supplied) The goal of this experiment was to determine the role of the lncRNA DINO in the DNA damage response in regulating transcription factor occupancy of human fibroblasts. DINO, an inducible long noncoding in respose to DNA damage, is required for cell cycle arrest and induction of several p53 regulated genes. We hypothesized that ATACseq in DINO-depleted cells may uncover a role for DINO in transcription factor recruitment to p53 responsive genes following DNA damage. Organism: Homo sapiens Type: Other Platform: GPL11154 24 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA307255 Series Accession: GSE76417 ID: 200076417 3185. Polarized regulatory landscape and Wnt responsiveness underlie Hox activation in embryos (Submitter supplied) Sequential 3’ to 5’ activation of the Hox gene clusters in early embryos is a most fascinating issue in developmental biology. Neither the trigger nor the regulatory elements involved in the transcriptional initiation of the 3’-most Hox genes have been unraveled in any organism. We demonstrate that a series of enhancers, some of which Wnt-dependent, is located within a HoxA 3’ subTAD. This subTAD forms the structural basis for multiple layers of 3’-polarized features, including DNA accessibility and enhancer activation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL19057 GPL13112 65 Samples FTP download: GEO (BEDGRAPH, BW, NARROWPEAK, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA320877 Series Accession: GSE81203 ID: 200081203 3186. The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 14 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85073/ Series Accession: GSE85073 ID: 200085073 3187. The long non-coding RNA Morrbid regulates Bim and short-lived myeloid cell lifespan (ATAC-Seq) (Submitter supplied) Neutrophils, eosinophils and “classical” monocytes collectively account for ~70% of human blood leukocytes and are among the shortest-lived cells in the body. Precise regulation of the lifespan of these myeloid cells is critical to maintain protective immune responses while minimizing the deleterious consequences of prolonged inflammation. However, how the lifespan of these cells is strictly controlled remains largely unknown. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 4 Samples FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85071/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA336055 Series Accession: GSE85071 ID: 200085071 3188. Cell type-specific chromatin states differentially prime squamous cell carcinoma tumor-initiating cells for epithelial to mesenchymal transition [ATAC-seq] (Submitter supplied) Epithelial to mesenchymal transition (EMT) in cancer cells has been associated with metastasis, stemness and resistance to therapy. The reason why some tumors undergo EMT and other not might reflect intrinsic properties of their cell of origin, although this possibility is largely unexplored. By targeting the same oncogenic mutations to discrete skin compartments, we show cell type-specific chromatin and transcriptional states differentially prime tumors to EMT. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA288786 Series Accession: GSE70474 ID: 200070474 3189. Genome-wide analysis of enhancers in Drosophila DV patterning (Submitter supplied) The submitted data have been utilized in the following two papers: "Drosophila poised enhancers are generated during tissue patterning with the help of repression" (Koenecke et al 2016, Genome Research): Histone modifications are frequently used as markers for enhancer states, but how to interpret enhancer states in the context of embryonic development is not clear. The poised enhancer signature, involving H3K4me1 and low levels of H3K27ac, has been reported to mark inactive enhancers that are poised for future activation. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 4 related Platforms 47 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA284259 Series Accession: GSE68983 ID: 200068983 3190. The spectrum and regulatory landscapes of intestinal innate lymphoid cells are shaped by the microbiome (ChIP-Seq) (Submitter supplied) Innate lymphoid cells (ILCs) are critical modulators of mucosal immunity, inflammation, and tissue homeostasis, but their full spectrum of cellular states and regulatory landscapes remain elusive. Here, we use a combination of genome-wide RNA-seq, ChIP-seq and ATAC-seq to compare the transcriptional and epigenetic identity of small intestinal ILCs, identifying thousands of distinct gene profiles and regulatory elements. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 24 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA336450 Series Accession: GSE85156 ID: 200085156 3191. The spectrum and regulatory landscapes of intestinal innate lymphoid cells are shaped by the microbiome (RNA-Seq) (Submitter supplied) Innate lymphoid cells (ILCs) are critical modulators of mucosal immunity, inflammation, and tissue homeostasis, but their full spectrum of cellular states and regulatory landscapes remain elusive. Here, we use a combination of genome-wide RNA-seq, ChIP-seq and ATAC-seq to compare the transcriptional and epigenetic identity of small intestinal ILCs, identifying thousands of distinct gene profiles and regulatory elements. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 24 Samples FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA336451 Series Accession: GSE85154 ID: 200085154 3192. The spectrum and regulatory landscapes of intestinal innate lymphoid cells are shaped by the microbiome (ATAC-Seq) (Submitter supplied) Innate lymphoid cells (ILCs) are critical modulators of mucosal immunity, inflammation, and tissue homeostasis, but their full spectrum of cellular states and regulatory landscapes remain elusive. Here, we use a combination of genome-wide RNA-seq, ChIP-seq and ATAC-seq to compare the transcriptional and epigenetic identity of small intestinal ILCs, identifying thousands of distinct gene profiles and regulatory elements. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 12 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA336452 Series Accession: GSE85153 ID: 200085153 3193. The spectrum and regulatory landscapes of intestinal innate lymphoid cells are shaped by the microbiome (single cells) (Submitter supplied) Innate lymphoid cells (ILCs) are critical modulators of mucosal immunity, inflammation, and tissue homeostasis, but their full spectrum of cellular states and regulatory landscapes remain elusive. Here, we use a combination of genome-wide RNA-seq, ChIP-seq and ATAC-seq to compare the transcriptional and epigenetic identity of small intestinal ILCs, identifying thousands of distinct gene profiles and regulatory elements. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL19057 46 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA336453 Series Accession: GSE85152 ID: 200085152 3194. Foxn1 choreographs both early and late events in thymic lympho-stromal cross-talk (Submitter supplied) Normal thymic T cell development is enabled by a stromal microenvironment most importantly composed of distinct epithelial cell populations in cortex and medulla. Their differentiation, growth and function require the expression of the transcription factor Foxn1. Direct targets of Foxn1 have, however, remained largely undefined. Utilizing newly created static and inducible genetic model systems, we now provide a genome wide map of Foxn1 target genes and the sequences bound by this master regulator. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL13112 9 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA302815 Series Accession: GSE75219 ID: 200075219 3195. Memory of inflammation in regulatory T cells (Submitter supplied) Transcriptome and epigenome of Treg and effector T cells in various activation states. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 91 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA325555 Series Accession: GSE83315 ID: 200083315 3196. In vitro cultured H7 human embryonic stem cells (WiCell) and H7-derived downstream early mesoderm progenitors (Submitter supplied) Stem-cell differentiation to desired lineages requires navigating alternating developmental paths that often lead to unwanted cell types. Hence, comprehensive developmental roadmaps are crucial to channel stem-cell differentiation toward desired fates. To this end, here, we map bifurcating lineage choices leading from pluripotency to 12 human mesodermal lineages, including bone, muscle, and heart. We defined the extrinsic signals controlling each binary lineage decision, enabling us to logically block differentiation toward unwanted fates and rapidly steer pluripotent stem cells toward 80%–99% pure human mesodermal lineages at most branchpoints. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Other Platforms: GPL20301 GPL18573 12 Samples FTP download: GEO (NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE85nnn/GSE85066/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA319573 Series Accession: GSE85066 ID: 200085066 3197. Reprogramming-associated aberrant DNA methylation determines hematopoietic differentiation capacity of human induced pluripotent stem cells (Submitter supplied) The variation among induced pluripotent stem cells (iPSCs) in their differentiation capacity to specific lineages is frequently attributed to somatic memory. In this study, we compared hematopoietic differentiation capacity of 35 human iPSC lines derived from four different tissues and four embryonic stem cell lines. The analysis revealed that hematopoietic commitment capacity (PSCs to hematopoietic precursors) is correlated with the expression level of the IGF2 gene independent of the iPSC origins. more... Organism: Homo sapiens Type: Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 29 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA302057 Series Accession: GSE74967 ID: 200074967 3198. Structural organization of the inactive X chromosome (Submitter supplied) X-chromosome inactivation (XCI) entails a massive structural reorganization of the inactive X (Xi). However the molecular architecture of the Xi is unknown. Here we show that the Xi lacks typical autosomal features such as active/inactive compartments and topologically associating domains (TADs), except around a small number of genes that escape XCI and remain expressed. Escaping genes form TADs and retain DNA accessibility at promoter-proximal and CTCF binding sites, indicating that these loci can avoid Xist-mediated erasure of chromosomal structure. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Other; Third-party reanalysis Platform: GPL13112 8 Samples FTP download: GEO (TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA294714 Series Accession: GSE72697 ID: 200072697 3199. The transcriptional repressor Polycomb group factor 6 (PCGF6) negatively regulates dendritic cell activation and promotes quiescence (Submitter supplied) We identified that DC activation and immunogenicity are regulated by the transcriptional repressor polycomb group factor 6 (PCGF6). Pcgf6 is rapidly downregulated upon stimulation and this downregulation is necessary to permit full DC activation. Silencing PCGF6 expression enhanced both spontaneous and stimulated DC activation. We show that PCGF6 associates with the H3K4me3 demethylase JARID1c, and together they negatively regulate H3K4me3 levels in DCs. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 9 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA326590 Series Accession: GSE83640 ID: 200083640 3200. Microglia development follows a stepwise program to regulate brain homeostasis (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 117 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79819/ Series Accession: GSE79819 ID: 200079819 3201. Microglia development follows a stepwise program to regulate brain homeostasis - ChIP-seq (Submitter supplied) Microglia play important roles in life-long brain maintenance and in pathology, but are also crucial in the developing central nervous system; yet their regulatory dynamics during development have not been fully elucidated. Genome-wide chromatin and expression profiling coupled with single-cell transcriptomic analysis throughout development reveal that microglia undergo three temporal developmental stages in synchrony with the brain: early, pre-, and adult microglia, which are under the control of distinct regulatory circuits. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA317061 Series Accession: GSE79816 ID: 200079816 3202. UTX controls lineage-specific epigenetic program of iNKT cells (Submitter supplied) NKT cells are innate-like lymphocytes that protect against infection, autoimmune disease, and cancer. However, little is known about epigenetic regulation of iNKT cell development. Here, we show that the H3K27me3 histone demethylase UTX is an essential cell-intrinsic factor that controls an iNKT lineage specific gene expression program and epigenetic landscape in a demethylase activity dependent manner. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 9 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE84nnn/GSE84238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA328452 Series Accession: GSE84238 ID: 200084238 3203. Next Generation Sequencing profile of leukemia from distinct cells-of-origin [ATAC-seq] (Submitter supplied) The goal of this study is to identify genomic signatures predicitve of cell-of-origin in acute myeloid leukemia Cryopreserved leukemic bone marrow samples were thawed, and 50,000 LSCs (L-GMP; GFP+ Lin- Sca-1- c-Kit+ CD34+ FcγR+) were sorted by FACSAria (BD). Samples were placed at 37oC and 5% CO2 in IMDM plus 10% fetal calf serum for 30 minutes, then harvested, washed with 1X PBS, and ATAC-seq libraries were prepared. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA322591 Series Accession: GSE81805 ID: 200081805 3204. Impact of MEF2C on chromatin accessibility of mouse BM pre-B and myeloid cells (Submitter supplied) We analyzed the chromatin accessibility of control and Mef2c deficient mouse BM pre-B and myeloid cells by ATAC-seq analysis. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 10 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81508/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA321840 Series Accession: GSE81508 ID: 200081508 3205. Next Generation Sequencing profile of leukemia from distinct cells-of-origin [ATAC-seq profiles] (Submitter supplied) The goal of this study is to identify genomic signatures predicitve of cell-of-origin in acute myeloid leukemia Cryopreserved leukemic bone marrow samples were thawed, and 50,000 bulk leukemia (GFP+) cells were sorted by FACSAria (BD). Samples were placed at 37oC and 5% CO2 in IMDM plus 10% fetal calf serum for 30 minutes, then harvested, washed with 1X PBS, and ATAC-seq libraries were prepared. Quantitative PCR using the Library Quantitation kit (Kapa Biosystems) was used to estimate library concentrations. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA301164 Series Accession: GSE74688 ID: 200074688 3206. Assay for Transposase-Accessible Chromatin with high throughput sequencing (ATAC-Seq) reveals lncRNA MANTIS important for the angiogenic function of endothelial cells (Submitter supplied) The angiogenic function of endothelial cells is tightly regulated but the impact of long non-coding RNAs (lncRNA) remains unclear. The lncRNA yielded to be an epigenetically restricted endothelial lncRNAs. Here, the chromatin accessibility after knockdown of MANTIS was investigated. It revealed changes on chromatin accessibility on several promoters which are known to be important for endothelial angiogenic function. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE83nnn/GSE83427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA325880 Series Accession: GSE83427 ID: 200083427 3207. INO80 governs super-enhancer-mediated oncogenic transcription and tumor growth in melanoma [ATAC-seq] (Submitter supplied) Super-enhancers (SEs) are large genomic regions with high density of enhancer marks. In cancer, SEs are found near oncogenes and dictate cancer gene expression. However, how oncogenic SEs are regulated remains poorly understood. Here, we show that INO80, a chromatin remodeling complex, is required for SE-mediated oncogenic transcription and tumor growth in melanoma. The expression of Ino80, the SWI/SNF ATPase, is elevated in melanoma cells and patient melanomas compared to normal melanocytes and benign nevi. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 2 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE82nnn/GSE82330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA328059 Series Accession: GSE82330 ID: 200082330 3208. Integrative fine-mapping of regulatory variants and mechanisms at coronary artery disease loci (Submitter supplied) Coronary artery disease (CAD) is the leading cause of mortality and morbidity driven by both genetic and environmental risk factors. Meta-analyses of genome-wide association studies (GWAS) have identified multiple single nucleotide polymorphisms (SNPs) associated with CAD and myocardial infarction (MI) susceptibility in multi-ethnic populations. The majority of these variants reside in non-coding regulatory regions and are co-inherited with hundreds of candidate regulatory SNPs. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL16791 24 Samples FTP download: GEO (BED, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA295524 Series Accession: GSE72696 ID: 200072696 3209. Piwi modulates chromatin accessibility by regulating multiple factors including histone H1 to repress transposons (Submitter supplied) PIWI-interacting RNAs (piRNAs) mediate transposable element (TE) silencing at the transcriptional or post-transcriptional level in animal gonads. In the Drosophila ovary, Piwi–piRNA complexes (Piwi–piRISCs) repress TE transcription by modifying the chromatin state, such as H3K9me3 marks. Here, we demonstrate that Piwi physically interacts with linker histone H1. Depletion of Piwi decreases H1 density on target loci, leading to TE derepression. more... Organism: Drosophila melanogaster Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Other Platforms: GPL17275 GPL16479 34 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA321533 Series Accession: GSE81434 ID: 200081434 3210. Allele-specific ATAC-seq (Submitter supplied) One of the two X chromosomes in female somatic cells is transcriptionally silenced across cell generations, a classic paradigm of epigenetic regulation.  Although most genes are stably silenced, certain X-linked genes escape X-chromosome inactivation (XCI), providing a fundamental dosage difference between females and males.  A role for chromosome conformation has been proposed in XCI as the process is  accompanied by a massive structural reorganisation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 7 Samples FTP download: GEO (BW, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA290471 Series Accession: GSE71156 ID: 200071156 3211. Chromatin accessibility maps of chronic lymphocytic leukemia identify subtype-specific epigenome signatures and transcription regulatory networks (Submitter supplied) Chronic lymphocytic leukemia (CLL) is characterized by substantial clinical heterogeneity, despite relatively few genetic alterations. To provide a basis for studying epigenome deregulation in CLL, we established genome-wide chromatin accessibility maps for 88 CLL samples from 55 patients using the ATAC-seq assay, and we also performed ChIPmentation and RNA-seq profiling for ten representative samples. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other Platform: GPL21290 138 Samples FTP download: GEO (BIGWIG, CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81274/ Series Accession: GSE81274 ID: 200081274 3212. The landscape of accessible chromatin in mammalian pre-implantation embryos (ChIP -Seq) (Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 2 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE79nnn/GSE79935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA317459 Series Accession: GSE79935 ID: 200079935 3213. The landscape of accessible chromatin in mammalian pre-implantation embryos (RNA-Seq) (Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing Platform: GPL18480 32 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA277361 Series Accession: GSE66582 ID: 200066582 3214. The landscape of accessible chromatin in mammalian pre-implantation embryos (ATAC-Seq) (Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 17 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA277362 Series Accession: GSE66581 ID: 200066581 3215. The landscape of accessible chromatin in mammalian pre-implantation embryos (Submitter supplied) In mammals, extensive chromatin reorganization is essential for reprogramming terminally committed gametes to a totipotent state during preimplantation development. However, the global chromatin landscape and its dynamics in this period remain unexplored. Here we report a genome-wide map of accessible chromatin in mouse preimplantation embryos using an improved assay for transposase-accessible chromatin with high throughput sequencing (ATAC-seq) approach with CRISPR/Cas9-assisted mitochondrial DNA depletion. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 51 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66390/ Series Accession: GSE66390 ID: 200066390 3216. Genetic dissection of the α-globin super-enhancer (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Other; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16417 GPL19057 36 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE78nnn/GSE78835/ Series Accession: GSE78835 ID: 200078835 3217. Dissection of a super-enhancer in vivo (ATAC-seq) (Submitter supplied) Many genes determining cell identity are regulated by a set of enhancer elements collectively referred to as super-enhancers. It has been suggested that super-enhancers represent a new class of cis-element, in which the assembly of enhancers confers an emergent property from the extended regulatory domain. To investigate this, we used published criteria to define one of the strongest super-enhancers in mouse erythroid cells – a 24kb region regulating α-globin expression, which comprises five enhancer-like components. more... Organism: Mus musculus Type: Other Platforms: GPL16417 GPL19057 19 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE78nnn/GSE78800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA313964 Series Accession: GSE78800 ID: 200078800 3218. Essential role of the transcription factors E2A and E2-2 in germinal center B cell and plasma cell development (Submitter supplied) E2A is an essential regulator of early B-cell development. Here we demonstrated that E2A together with E2-2 controlled germinal-center B-cell and plasma cell development. As shown by identification of regulated E2A,E2-2 targets in activated B-cells, these E-proteins directly activated genes with important functions in germinal-center B-cells and plasma cells by inducing or maintaining DNase I hypersensitive sites. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL13112 56 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE77nnn/GSE77744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA311335 Series Accession: GSE77744 ID: 200077744 3219. Lineage-specific and single cell chromatin accessibility charts human hematopoiesis and leukemia evolution (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL11154 GPL16791 787 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75384/ Series Accession: GSE75384 ID: 200075384 3220. ATAC-seq data (Submitter supplied) A single hematopoietic stem cell can give rise to all blood cells with remarkable fidelity. Here, we define the chromatin accessibility and transcriptional landscape controlling this process in thirteen primary cell types that traverse the hematopoietic hierarchy. Exploiting the finding that enhancer landscapes better reflect cell identity than mRNA levels, we enable "enhancer cytometry" for accurate enumeration of pure cell types from complex populations. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL18573 GPL16791 130 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA301969 Series Accession: GSE74912 ID: 200074912 3221. Single-cell chromatin accessibility data using scATAC-seq (Submitter supplied) A single hematopoietic stem cell can give rise to all blood cells with remarkable fidelity. Here, we define the chromatin accessibility and transcriptional landscape controlling this process in thirteen primary cell types that traverse the hematopoietic hierarchy. Exploiting the finding that enhancer landscapes better reflect cell identity than mRNA levels, we enable "enhancer cytometry" for accurate enumeration of pure cell types from complex populations. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 576 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA299657 Series Accession: GSE74310 ID: 200074310 3222. Active and inactive enhancers co-operate to exert localized and long-range control of gene regulation [ATAC-seq] (Submitter supplied) We report that in developing B cells individual enhancers of Igk make up super-enhancer cluster where contacts between its components rely on all constituents. Reduction of interaction frequency in enhancer knock-out cells is associated with deminished transcriptional output of enhancers and Igk locus. Moreover, we find that Igk enhancer MiEk has an effect on levels of CBFb enrichment on Tcrb enhancer, Eb afffecting Tcrb recombination and T cell development. Organism: Mus musculus Type: Other Platform: GPL13112 8 Samples FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE80nnn/GSE80269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA318458 Series Accession: GSE80269 ID: 200080269 3223. Effects of biobanking on chromatin accessibility (Submitter supplied) The goal of this study was to test the effects of biobanking on chromatin assessibility, as defined by ATAC-seq. Human naïve B cells were FACS sorted from PBMCs that were either frozen or processed fresh. A range of cell numbers were used to identify technical limitations and reproducibility of the ATAC-seq assay on biobanked PBMCs comapred to freshly sorted material. To provide insight into a disease process, naive B cells were isolated from healthy donors or a biorepository of Systemic Lupus Erythematosus undergoing disease flares. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL11154 16 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA290920 Series Accession: GSE71338 ID: 200071338 3224. ATAC-seq data from EB-HSPC after AM580 treatment compared to DMSO-treated EB (Submitter supplied) RA signalling regulated endothelial to hematopoietic transition and HSC generation. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA308423 Series Accession: GSE76681 ID: 200076681 3225. Distinct Gene Regulatory Pathways for Human Innate Versus Adaptive Lymphoid Cells [ChIP-seq & ATAC-seq] (Submitter supplied) Innate lymphoid cells (ILCs) serve as sentinels in mucosal tissues, sensing release of soluble inflammatory mediators, rapidly communicating danger via cytokine secretion, and functioning as guardians of tissue homeostasis. Although ILCs have been studied extensively in model organisms, little is known about these “first responders” in humans, especially their lineage and functional kinships to cytokine-secreting T helper cell (Th) counterparts. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 37 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE77nnn/GSE77299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA309990 Series Accession: GSE77299 ID: 200077299 3226. Nfib promotes Metastasis through a Widespread Increase in Chromatin Accessibility (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL16417 GPL16791 91 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81258/ Series Accession: GSE81258 ID: 200081258 3227. Nfib promotes Metastasis through a Widespread Increase in Chromatin Accessibility [ATAC-seq] (Submitter supplied) We describe Nfib as an important regulator of chromatin accessibility in Small cell lung cancer (SCLC). Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL17021 GPL16417 GPL16791 67 Samples FTP download: GEO (BED, BROADPEAK, BW, CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE81nnn/GSE81255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA321073 Series Accession: GSE81255 ID: 200081255 3228. A long noncoding RNA lincRNA-EPS acts as a transcriptional brake to restrain inflammation (Submitter supplied) LincRNA-EPS is a long noncoding RNA that is expressed in macrophages and downregulated upon exposure to diverse microbial products. Analysis of macrophages from lincRNA-EPS-deficient mice revealed a specific role for this lincRNA in restraining immune response gene (IRG) expression. Mechanistically, lincRNA-EPS associates with chromatin at regulatory regions of IRGs to repress their transcription. To gain insight into the molecular function of lincRNA-EPS on chromatin, we generated ATAC-Seq libraries from wildtype and lincRNA-EPS-deficient macrophages stimulated with LPS. Organism: Mus musculus Type: Other Platform: GPL19057 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE78nnn/GSE78873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA314247 Series Accession: GSE78873 ID: 200078873 3229. Cell freezing protocol suitable for ATAC-Seq on motor neurons derived from human induced pluripotent stem cells (Submitter supplied) We describe a protocol for freezing neuronal cells that is compatible with ATAC-Seq, producing results that compare well with those generated from fresh cells. We developed our protocol on a disease-relevant cell type, namely motor neurons differentiated from induced pluripotent stem cells from a patient affected by spinal muscular atrophy. We found that while flash-frozen motor neurons are not suitable for ATAC-Seq, the assay is successful with slow-cooled cryopreserved samples. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 6 Samples FTP download: GEO (BED, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE78nnn/GSE78036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA312393 Series Accession: GSE78036 ID: 200078036 3230. Developmental Acquisition of Regulomes Underlies Innate Lymphoid Cell Functionality (Submitter supplied) Innate lymphoid cells (ILCs) play key roles in host defense, barrier integrity, and homeostasis, and they mirror adaptive CD4+ T helper (Th) cell subtypes in both usages of effector molecules and transcription factors. To better understand ILC subsets and their relationship with Th cells, we measured genome-wide chromatin accessibility. We found that chromatin in proximity to effector genes was selectively accessible in ILCs prior to high-level transcription upon activation. more... Organism: Mus musculus Type: Other; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL17021 GPL9250 87 Samples FTP download: GEO (BED, BEDGRAPH, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE77nnn/GSE77695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA311222 Series Accession: GSE77695 ID: 200077695 3231. The dynamic regulatory genome of Capsaspora owczarzaki and the origin of animal multicellularity (Submitter supplied) We carried out multiple functional genomic assays in Capsaspora owczarzaki, the unicellular relative of animals with the largest known gene repertoire for transcriptional regulation. We show that changing chromatin states, differential lincRNA expression and dynamic cis-regulatory sites are associated with life cycle transitions in Capsaspora. Organism: Capsaspora owczarzaki Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL20718 33 Samples FTP download: GEO (BED, BEDGRAPH, BROADPEAK, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA290432 Series Accession: GSE71131 ID: 200071131 3232. Sex-specific chromatin accessibility profiling in human PBMCs (Submitter supplied) We used ATAC-seq to profile the chromatin accessibility differences between sexes. We investigated the chromatin states of the PBMCs of twenty individuals, with an equal distribution of males and females, controlled for age (18-45 years old) and ethnicity (Caucasian). Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18573 20 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE69nnn/GSE69749/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA286321 Series Accession: GSE69749 ID: 200069749 3233. Master transcription factors in corneal epithelial cells [ATAC-Seq] (Submitter supplied) In development, embryonic ectoderm differentiates into several lineages including neuroectoderm and surface ectoderm, through the mechanism largely unclear. Here we report that OVOL2 is required for the transcriptional program of corneal epithelium cell(CEC)s, a derivative of surface ectoderm, and it might regulates the differential transcriptional programs between the two lineages. By a functional screening, we identified transcription factors (TFs) maintaining human CECs. more... Organism: Homo sapiens Type: Other; Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68069/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA281650 Series Accession: GSE68069 ID: 200068069 3234. Master transcription factors in corneal epithelial cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by array; Other; Genome binding/occupancy profiling by high throughput sequencing 5 related Platforms 41 Samples FTP download: GEO (BED, BIGWIG, CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE67nnn/GSE67823/ Series Accession: GSE67823 ID: 200067823 3235. Chronic haloperidol effects on open chromatin accessibility in mouse [ATAC-seq] (Submitter supplied) We evaluate the effects of chronic administration of antipsychotic haloperidol versus placebo in male, 8-week old, C57BL/6J mice. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 14 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE67nnn/GSE67744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA280815 Series Accession: GSE67744 ID: 200067744 3236. Epigenomic Landscapes of Retinal Rods and Cones (Submitter supplied) Both rod and cone photoreceptors are critical for mammalian vision yet they have important functional differences. In this study, we investigate patterns of DNA methylation and chromatin accessibility in mouse rods and cones. Unexpectedly, we find that a substantial fraction of hypo-methylated regions in the rod methylome are in inaccessible chromatin. These regions show marks of active regulatory regions earlier in neuronal development and could remain undermethylated in adult rods due to their highly compact chromatin. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL13112 GPL17021 33 Samples FTP download: GEO (BW, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA294311 Series Accession: GSE72550 ID: 200072550 3237. 4C-ker: A method to reproducibly identify genome-wide interactions captured by 4C-Seq experiments (Submitter supplied) 4C-Seq has proven to be a powerful technique to identify genome-wide interactions with a single locus of interest (or "bait") that can be important for gene regulation. However, analysis of 4C-Seq data is complicated by the many biases inherent to the technique. An important consideration when dealing with 4C-Seq data is the differences in resolution of signal across the genome that result from differences in 3D distance separation from the bait. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Other; Expression profiling by high throughput sequencing Platform: GPL17021 16 Samples FTP download: GEO (BED, BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE77nnn/GSE77645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA311084 Series Accession: GSE77645 ID: 200077645 3238. Global analysis of genome accessibility in hair follicle stem cells (Submitter supplied) Quiescent stem cells are periodically activated to maintain tissue homeostasis or occasionally called into action upon injury. Molecular mechanisms that constitutively maintain stem cell identity or promote stem cell proliferation and differentiation upon activation have been extensively studied. However, it is unclear how quiescent stem cells maintain identity and reinforce quiescence when they transition from quiescence to activation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA282385 Series Accession: GSE68288 ID: 200068288 3239. A zebrafish melanoma model reveals emergence of neural crest identity during melanoma initiation [ATAC-Seq] (Submitter supplied) We report the locations of accessible/open chromatin as assayed by ATAC-Seq on two zebrafish melanoma cell lines, zcrest 1 and zcrest 2. Organism: Danio rerio Type: Other Platform: GPL18413 2 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA303999 Series Accession: GSE75351 ID: 200075351 3240. 7SK-BAF axis controls pervasive transcription at enhancers (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Other 4 related Platforms 74 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE69nnn/GSE69143/ Series Accession: GSE69143 ID: 200069143 3241. 7SK-BAF axis controls pervasive transcription at enhancers [ATAC-Seq] (Submitter supplied) Eukaryotic genomes are extensively transcribed, but unfettered transcription alters gene expression and leads to genome damage by several means. Divergent transcription occurs at active enhancers and promoters, distinct classes of cis-regulatory elements critical for precise control of gene expression. A key step in RNA Polymerase II (Pol II) transcription is promoter-proximal pausing, which occurs bidirectionally ~25-60 nucleotides downstream of transcription start sites (TSS). more... Organism: Mus musculus Type: Other Platform: GPL19057 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE69nnn/GSE69139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA284632 Series Accession: GSE69139 ID: 200069139 3242. Active DNA demethylation at enhancers during the vertebrate phylotypic period (Submitter supplied) The vertebrate body plan and organs are shaped during a conserved embryonic phase called the phylotypic stage, however the mechanisms that guide the epigenome through this transition and their evolutionary conservation remain elusive. Here we report widespread DNA demethylation of enhancers during the phylotypic period in zebrafish, Xenopus and mouse. These enhancers are linked to developmental genes that display coordinated transcriptional and epigenomic changes in the diverse vertebrates during embryogenesis. more... Organism: Xenopus tropicalis; Mus musculus; Danio rerio Type: Methylation profiling by high throughput sequencing; Expression profiling by high throughput sequencing 4 related Platforms 30 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE68nnn/GSE68087/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA281741 Series Accession: GSE68087 ID: 200068087 3243. GATA3-mediated chromatin reprogramming in breast cancer cells (Submitter supplied) Pioneer transcription factors bind to silent chromatin, and initiate cell fate conversion. One potential pioneer factor, GATA3, is a critical component for multiple cellular programs. GATA3 is of particular interest as it regulates gene expression in breast cancers, and low expression correlates with poor prognosis. Here we demonstrate the pioneering activity of GATA3 utilizing a cellular reprogramming system (the mesenchymal-epithelial transition) in breast cancer cells. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL18573 GPL11154 GPL15520 80 Samples FTP download: GEO (BED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA293191 Series Accession: GSE72141 ID: 200072141 3244. Genome-wide distribution and function of ATP-dependent chromatin remodelers in embryonic stem cells (Submitter supplied) This study describes the distribution and functional analysis of ATP-dependent chromatin remodelers in mouse 46C ES cells. The remodelers for which ChIP-Seq profiles were generated are Brg1, Chd1, Chd2, Chd4, Chd6, Chd8, Chd9 and Ep400. We first generated ES cell lines expressing individual remodelers fused to an affinity tag at the C-terminus, from their endogenous loci. Remodelers were then formaldehyde-crosslinked to chromatin in vivo, MNase digested to release individual nucleosomes, then immunoprecipitated sequentially with two distinct antibodies against the tag. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 5 related Platforms 44 Samples FTP download: GEO (BEDGRAPH, BW, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE64nnn/GSE64825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA272126 Series Accession: GSE64825 ID: 200064825 3245. A Stringent Systems Approach Uncovers Gene-Specific Mechanisms Regulating Inflammation [ATAC-seq] (Submitter supplied) Much has been learned about transcriptional cascades and networks from large-scale systems analyses of high-throughput data sets. However, analysis methods that optimize statistical power through simultaneous evaluation of thousands of ChIP-seq peaks or differentially expressed genes possess substantial limitations in their ability to uncover mechanistic principles of transcriptional control. By examining nascent transcript RNA-seq, ChIP-seq, and binding motif data sets from lipid A-stimulated macrophages with increased attention to the quantitative distribution of signals, we identified unexpected relationships between the in vivo binding properties of inducible transcription factors, motif strength, and transcription. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 8 Samples FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA299297 Series Accession: GSE74191 ID: 200074191 3246. The Histone Variant MacroH2A1.2 is Necessary for the Activation of Muscle Enhancers and Recruitment of the Transcription Factor Pbx1 (Submitter supplied) Histone variants complement and integrate histone post-translational modifications in regulating transcription. The histone variant macroH2A1 (mH2A1) is almost three times the size of its canonical H2A counterpart due to the presence of a ~25kDa evolutionarily conserved non-histone macro domain. Strikingly, mH2A1 can mediate both gene repression and activation. However, the molecular determinants conferring these alternative functions remain elusive. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL13112 41 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA305993 Series Accession: GSE76010 ID: 200076010 3247. The LRF/ZBTB7A transcription factor is a BCL11A-independent repressor of fetal hemoglobin (Submitter supplied) Hemoglobinopathies, including sickle cell disease and _-thalassemia, are global public health concerns. Induction of fetal-type hemoglobin (HbF) is a promising means to treat these disorders; however, precisely how HbF expression is silenced in adult erythroid cells is not fully understood. Here, we show that the LRF/ZBTB7A transcription factor is a potent repressor of HbF production. LRF inactivation derepresses embryonic/fetal _-globin expression in mouse and human adult erythroid cells. more... Organism: Mus musculus; Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL17021 35 Samples FTP download: GEO (CSV, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA302116 Series Accession: GSE74977 ID: 200074977 3248. Validation of THS-seq method, and comparison of published ENCODE DNase-seq data, self-generated ATAC-seq data and published ATAC-seq data, and THS-seq data for quantitation of chromatin accessibility. (Submitter supplied) Chromatin accessibility captures the binding status of protein factors to chromosomes in vivo, and has been considered a highly informative proxy for functional protein-DNA interactions. Existing DNase I and Tn5 transposase based assays generally require tens of thousands to millions of fresh cells. Applying Tn5 tagmentation to single cells yields very sparse maps. Here we present a transposome hypersensitive sites sequencing assay (THS-seq) for highly sensitive characterizations of chromatin accessibility. Organism: Homo sapiens Type: Third-party reanalysis; Other; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL15520 11 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA293169 Series Accession: GSE72089 ID: 200072089 3249. Nucleosome free chromatin measured by ATAC-seq in Rice leaves (Oryza sativa) (Submitter supplied) Nucleosome free measurement of 14 day old rice leaves (2nd leaf) in heat stress and recovery and dehydration stress and recovery Organism: Oryza sativa Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13160 18 Samples FTP download: GEO (GFF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA305365 Series Accession: GSE75794 ID: 200075794 3250. Integration of ATAC-seq and RNA-seq Identifies Human Alpha Cell and Beta Cell Signature Genes (Submitter supplied) Objective: Although glucagon-secreting α-cells and insulin-secreting β-cells have opposing functions in regulating plasma glucose levels, the two cell types share a common developmental origin and have overlaps in their transcriptome and epigenome profiles. Notably, destruction of one of these cell populations can stimulate repopulation via transdifferentiation of the other cell type, at least in mice, suggesting plasticity between these cell fates. more... Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL11154 GPL18573 23 Samples FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE76nnn/GSE76268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA306754 Series Accession: GSE76268 ID: 200076268 3251. The histone chaperone CAF-1 safeguards somatic cell identity during transcription factor-induced reprogramming (sequencing) (Submitter supplied) During development, specialized cell lineages are generated through the establishment of cell type-specific transcriptional patterns and epigenetic programs. However, the precise mechanisms and regulators that maintain these specialized cell states remain largely elusive. To identify molecules that safeguard somatic cell identity, we performed two comprehensive RNAi screens targeting known and predicted chromatin regulators during transcription factor-mediated reprogramming of mouse fibroblasts to induced pluripotent stem cells (iPSCs). more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 61 Samples FTP download: GEO (BIGWIG, BW, CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA277219 Series Accession: GSE72744 ID: 200072744 3252. The histone chaperone CAF-1 safeguards somatic cell identity during transcription factor-induced reprogramming (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing; Expression profiling by array Platforms: GPL16570 GPL17021 73 Samples FTP download: GEO (BW, CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66534/ Series Accession: GSE66534 ID: 200066534 3253. Epigenetic determinants of self-renewal in glioblastoma [ATAC-seq] (Submitter supplied) We over-expressed an epigenetic regulator in a glioblastoma (GBM) primary culture from an adult patient. These GBM cells have cancer stem cell phenotypes, as they have self-renewal properties and tumor initiation potential when transplanted in immunocompromised mice. ATAC-seq was performed on cells over-expressing the epigenetic regulator and control cells expressing EGFP. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL16791 12 Samples FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE67nnn/GSE67633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA280596 Series Accession: GSE67633 ID: 200067633 3254. Multifunctional role of the transcription factor Blimp1 in coordinating plasma cell differentiation (Submitter supplied) Blimp1 is an essential regulator of plasma cells. Here we studied its functions in early plasmablast differentiation by identifying regulated Blimp1 target genes. Blimp1 promoted plasmablast migration and adhesion by controlling many genes involved in these processes. It repressed several transcription factor genes and Aicda, thus silencing B-cell-specific gene expression, antigen presentation and class switch recombination in plasmablasts. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL17021 GPL11002 GPL13112 40 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA291849 Series Accession: GSE71698 ID: 200071698 3255. Genome-wide profilings of IFN-stimulated murine splenic B cells by ATAC-Seq. (Submitter supplied) We report the IFN-induced dynamics in murine splenic B cells. Male C57BL/6 mice were injected subcutaneously with 10,000U IFNa and spleens were removed at 90min. B cells were negatively isolated using magnetic beads and profiled for the chromatin configuration by ATAC-seq. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE75nnn/GSE75262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA302915 Series Accession: GSE75262 ID: 200075262 3256. BAF controls genome accessibility (Submitter supplied) Somatic differentiation requires induction of lineage specific genes to fulfill specialized tissue functions yet the genomic control of this process is incompletely understood. Using the epidermis as a model, we show here that the BAF chromatin remodeling complex is essential to maintain a subset of open chromatin regions, which are strikingly enriched for the DNA binding motif of the stratified epithelial lineage-determining transcription factor p63 (p=1X10-1786). more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL16791 26 Samples FTP download: GEO (BED, BROADPEAK, NARROWPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE67nnn/GSE67382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA279685 Series Accession: GSE67382 ID: 200067382 3257. Enhancers reside in a unique epigenetic environment during early zebrafish development (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18413 24 Samples FTP download: GEO (BED, COD, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74617/ Series Accession: GSE74617 ID: 200074617 3258. Enhancers reside in a unique epigenetic environment during early zebrafish development [ChIP-seq & ATAC-seq] (Submitter supplied) We describe that during early zebrafish development, DNA methylation has little influence on enhancer activity, and that hypo-methylation is a unique feature of primed enhancers, whereas active enhancers are generally hyper-methylated. Hypo-methylated enhancers (hypo-enhancers) are enriched close to important transcription factors (TFs) that act later in development, are specifically de-methylated before the mid blastula transition (MBT), and reside in a unique epigenetic environment. more... Organism: Danio rerio Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platform: GPL18413 7 Samples FTP download: GEO (BED, COD) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE74nnn/GSE74231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA299600 Series Accession: GSE74231 ID: 200074231 3259. ATAC-Seq on Cohesin mutant HSPCs (Submitter supplied) Understanding the impact of cohesin mutations on HSPC chromatin structure Organism: Homo sapiens Type: Other Platform: GPL18573 12 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA296371 Series Accession: GSE73206 ID: 200073206 3260. Cell type-specific chromatin states differentially prime squamous cell carcinoma tumor-initiating cells for epithelial to mesenchymal transition (Submitter supplied) Epithelial to mesenchymal transition (EMT) in cancer cells has been associated with metastasis, stemness and resistance to therapy. The reason why some tumors undergo EMT and other not might reflect intrinsic properties of their cell of origin, although this possibility is largely unexplored. By targeting the same oncogenic mutations to discrete skin compartments, we show cell type-specific chromatin and transcriptional states differentially prime tumors to EMT. more... Organism: Mus musculus Type: Expression profiling by array; Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 40 Samples FTP download: GEO (CEL, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71621/ Series Accession: GSE71621 ID: 200071621 3261. Dose-dependent role of the cohesin complex in normal and malignant hematopoiesis [ATAC-Seq] (Submitter supplied) Cohesin complex members have recently been identified as putative tumor suppressors in hematologic and epithelial malignancies. The cohesin complex guides chromosome segregation, however cohesin-mutant leukemias do not show genomic instability. We hypothesized reduced cohesin function alters chromatin structure and disrupts cis-regulatory architecture of hematopoietic progenitors. We investigated the consequences of Smc3 deletion in normal and malignant hematopoiesis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL19057 8 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE73nnn/GSE73215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA296386 Series Accession: GSE73215 ID: 200073215 3262. Loss of cohesin in vivo alters adult stem cell homeostasis leading to myeloproliferative neoplasms (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL17021 37 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72370/ Series Accession: GSE72370 ID: 200072370 3263. ATAC-sequencing in control and Stag2 knockdown cells (Submitter supplied) We performed ATAC-sequencing in LSK cells (Lin(neg)/c-Kit(+)/Sca-1(+)) from shRNA mice carrying an shRNA for either Renilla or Stag2. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 4 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE72nnn/GSE72367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA293887 Series Accession: GSE72367 ID: 200072367 3264. Histone Reader BRWD1 Targets and Restricts Recombination to the Igk Locus (Submitter supplied) B lymphopoiesis requires that immunoglobulin genes be accessible to RAG1-RAG2 recombinase. However, the RAG proteins bind widely to open chromatin, which suggests that additional mechanisms must restrict RAG-mediated DNA cleavage. Here we show that developmental downregulation of interleukin 7 (IL-7)-receptor signaling in small pre-B cells induced expression of the bromodomain-family member BRWD1, which was recruited to a specific epigenetic landscape at Igk dictated by pre–BCR-dependent Erk activation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL13112 12 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE63nnn/GSE63302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA267245 Series Accession: GSE63302 ID: 200063302 3265. ChIPmentation: fast, cheap, low-input ChIP-seq for histones and transcription factors (Submitter supplied) Chromatin immunoprecipitation followed by next generation sequencing (ChIP-seq) is widely used to map histone marks and transcription factor binding throughout the genome. Here we present ChIPmentation, a method that combines ChIP with sequencing library preparation by Tn5 transposase (“tagmentation”). ChIPmentation introduces sequencing-compatible adapters in a single-step reaction directly on bead-bound chromatin, which reduces time, cost, and input requirements, making ChIPmentation a convenient and high-throughput alternative to existing ChIP-seq protocols. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL11154 GPL16791 87 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA288801 Series Accession: GSE70482 ID: 200070482 3266. Hematopoietic differentiation is required for initiation of acute myeloid leukemia [ATAC-seq] (Submitter supplied) Leukemia initiating cells (LICs) of acute myeloid leukemia (AML) may arise from self-renewing hematopoietic stem cells (HSCs) and from committed progenitors. However, it remains unclear how leukemia-associated oncogenes instruct LIC formation from cells of different origins and if differentiation along the normal hematopoietic hierarchy is involved. Here, using murine models with the driver mutations MLL-AF9 or MOZ-TIF2, we found that regardless of the transformed cell types, myelomonocytic differentiation to the granulocyte macrophage progenitor (GMP) stage is critical for LIC generation. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE71nnn/GSE71688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA291951 Series Accession: GSE71688 ID: 200071688 3267. Transcription factor Runx1 cooperates with MyoD and c-Jun to regulate the balance of myoblast proliferation/differentiation [ATAC-Seq] (Submitter supplied) Runx1 is expressed in regenrating muscle, specifically in the muscle adult stem cells- the satellite cells. Its exact role and target genes were yet to be identified. We report here the genome wide open chromatin paatern, as established by ATAC-seq Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL17021 1 Sample FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE63nnn/GSE63573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA268289 Series Accession: GSE63573 ID: 200063573 3268. Transcription factor Runx1 cooperates with MyoD and c-Jun to regulate the balance of myoblast proliferation/differentiation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing 4 related Platforms 37 Samples FTP download: GEO (BROADPEAK, CEL) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE56nnn/GSE56131/ Series Accession: GSE56131 ID: 200056131 3269. Chordoma ATAC-Seq (Submitter supplied) Chromatin profiling of chordoma collected by the Broad chordoma target discovery project Organism: Homo sapiens Type: Other Platform: GPL11154 3 Samples FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE70nnn/GSE70771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA289511 Series Accession: GSE70771 ID: 200070771 3270. Individuality and variation of personal regulomes in human T cells (Submitter supplied) We surveyed the variation and dynamics of active regulatory elements genome-wide in CD4+ T cells, using Assay of Transposase Accessible Chromatin with sequencing (ATAC-seq) in longitudinal samples from healthy volunteers and during T cell activation. We created robust pipelines that enable accurate single molecule counting and allelic discrimination from clinical material. Over 4000 regulatory elements (7.2%) showed reproducible personal variation in activity. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 58 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE60nnn/GSE60682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA259243 Series Accession: GSE60682 ID: 200060682 3271. Single-cell chromatin accessibility data using scATAC-seq (Submitter supplied) Cell-to-cell variation is a universal feature of life that impacts a wide range of biological phenomena, from developmental plasticity to tumor heterogeneity. While recent advances have improved our ability to document cellular phenotypic variation the fundamental mechanisms that generate variability from identical DNA sequences remain elusive. Here we reveal the landscape and principles of cellular DNA regulatory variation by developing a robust method for mapping the accessible genome of individual cells via assay of transposase accessible chromatin sequencing (ATAC-seq). more... Organism: Mus musculus; Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing 4 related Platforms 1632 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE65nnn/GSE65360/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA274006 Series Accession: GSE65360 ID: 200065360 3272. Epigenomic Signatures of Neuronal Diversity in the Mammalian Brain (Submitter supplied) We developed an affinity purification approach to isolate tagged nuclei in mice (similar to INTACT; [Deal R.B. and Henikoff S. A simple method for gene expression and chromatin profiling of individual cell types within a tissue. Dev. Cell 18,1030-1040. (2010)]) and used it to characterize genome-wide patterns of transcription, DNA methylation, and chromatin accessibility in 3 major neuron classes of the neocortex (excitatory pyramidal neurons, parvalbumin (PV)-positive GABAergic interneurons, and vasoactive intestinal peptide (VIP)-positive GABAergic interneurons). more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL13112 GPL17021 31 Samples FTP download: GEO (BED, BW, TAR, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE63nnn/GSE63137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA266828 Series Accession: GSE63137 ID: 200063137 3273. Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platforms: GPL16791 GPL11154 62 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE64nnn/GSE64183/ Series Accession: GSE64183 ID: 200064183 3274. Bacterial Infection Remodels the DNA Methylation Landscape of Human Dendritic Cells (ATAC-Seq) (Submitter supplied) DNA methylation is an epigenetic mark thought to be robust to environmental perturbations on a short time scale. Here, we challenge that view by demonstrating that the infection of human dendritic cells with a live pathogenic bacteria is associated with rapid changes in methylation levels at thousands of loci. We performed an integrated analysis of data on genome-wide DNA methylation, histone mark patterns, chromatin accessibility, and gene expression, before and after infection. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 2 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE64nnn/GSE64173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA270813 Series Accession: GSE64173 ID: 200064173 3275. Brg1 activates enhancer repertoires to establish B cell identity and modulate cell growth (Submitter supplied) Early B cell development is orchestrated by the combined activities of the transcriptional regulators E2A, EBF1, Foxo1 and Ikaros. However, how the genome-wide binding patterns of these regulators are modulated during B-lineage development remains to be determined. Here, we found that in lymphoid progenitors the chromatin remodeler Brg1 specified the B cell fate. In committed pro-B cells Brg1 regulated Igh locus contraction and controlled c-Myc expression to modulate the expression of genes that regulate ribosome biogenesis. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL13112 GPL17021 26 Samples FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA278629 Series Accession: GSE66978 ID: 200066978 3276. Multiplex Single Cell Profiling of Chromatin Accessibility by Combinatorial Cellular Indexing [ATAC-seq] (Submitter supplied) Technical advances have enabled the collection of genome and transcriptome data sets with single-cell resolution. However, single-cell characterization of the epigenome has remained challenging. Furthermore, because cells must be physically separated prior to biochemical processing, conventional single-cell preparatory methods scale linearly. We applied combinatorial cellular indexing to measure chromatin accessibility in thousands of single cells per assay, circumventing the need for compartmentalization of individual cells. more... Organism: Homo sapiens; Mus musculus Type: Other Platforms: GPL15520 GPL19969 6 Samples FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE67nnn/GSE67446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA279961 Series Accession: GSE67446 ID: 200067446 3277. Frequent and Transient Acquisition of Pluripotency During Somatic Cell Trans-Differentiation with iPSCs Reprogramming Factors (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Methylation profiling by high throughput sequencing Platform: GPL18480 15 Samples FTP download: GEO (BED, TAB) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE67nnn/GSE67299/ Series Accession: GSE67299 ID: 200067299 3278. Frequent and Transient Acquisition of Pluripotency During Somatic Cell Trans-Differentiation with iPSCs Reprogramming Factors (ATAC-Seq) (Submitter supplied) Recent reports have proposed a new paradigm for obtaining mature somatic cell types from fibroblasts without going through a pluripotent state, by briefly expressing canonical iPSC reprogramming factors Oct4, Sox2, Klf4 and c-Myc (abbreviated as OSKM), in cells expanded in lineage differentiation promoting conditions. Here we apply genetic lineage tracing for endogenous Nanog, Oct4 and X chromosome reactivation during OSKM induced trans-differentiation, as these molecular events mark final stages for acquisition of induced pluripotency. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 4 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE67nnn/GSE67298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA279456 Series Accession: GSE67298 ID: 200067298 3279. High-resolution nucleosome positioning from ATAC-seq chromatin accessibility data (Submitter supplied) We describe the NucleoATAC algorithm for high-resolution nucleosome positioning and occupancy determination using ATAC-seq. Organism: Saccharomyces cerevisiae; Homo sapiens; Schizosaccharomyces pombe Type: Other 4 related Platforms 32 Samples FTP download: GEO ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE66nnn/GSE66386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA276699 Series Accession: GSE66386 ID: 200066386 3280. DOT1L Inhibits SIRT1 and SUV39H1-Mediated H3K9 Modification to Maintain Gene Expression (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens; Mus musculus Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL14761 GPL13112 GPL1261 44 Samples FTP download: GEO (BW, CEL, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE61nnn/GSE61022/ Series Accession: GSE61022 ID: 200061022 3281. DOT1L Inhibits SIRT1 and SUV39H1-Mediated H3K9 Modification to Maintain Gene Expression (ATACseq) (Submitter supplied) Methylation of histone 3 on lysine 79 (H3K79) is broadly associated with active gene expression in eukaryotes, and the H3K79 methyltransferase DOT1L is indispensable for specific leukemia subtypes like those with MLL-translocations. We found that suppression of the histone deacetylase SIRT1 rescued MLL-AF9 leukemia cells from their dependence on DOT1L. We show that upon DOT1L inhibition, SIRT1 is required for the acquisition of a repressive chromatin state consistent with facultative heterochromatin around MLL-AF9 target genes in leukemia and other genes possess an H3K79me2(hi), H3K9ac(hi), H3K9me2(low) histone modification profile in normal hematopoietic stem and progenitor cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 6 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE61nnn/GSE61016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA260077 Series Accession: GSE61016 ID: 200061016 3282. CIITA regulated genes in human B cells (Submitter supplied) The MHC class II transactivator (CIITA) is essential for the expression of MHC-II genes. CIITA functions as a transcriptional activator when bound to genes although repressive roles have been reported at some loci in other cell types. To define the role of CIITA in gene regulation in human B cells, we performed ChIP-seq for CIITA using three independent antibodies, the histone marks H3K4me3 and H3K27ac, and ATAC-seq in the Raji human B cell line. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL16791 GPL11154 15 Samples FTP download: GEO (BED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE52nnn/GSE52941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA230503 Series Accession: GSE52941 ID: 200052941 3283. Rapid functional annotation of native enhancers in embryonic stem cells with a Neisseria meningitidis CRISPR-Cas9 system (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Expression profiling by array; Genome binding/occupancy profiling by high throughput sequencing Platforms: GPL13112 GPL6885 17 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE64nnn/GSE64059/ Series Accession: GSE64059 ID: 200064059 3284. Rapid functional annotation of native enhancers in embryonic stem cells with a Neisseria meningitidis CRISPR-Cas9 system (ATAC-Seq) (Submitter supplied) Gene regulatory elements such as enhancers have profound effects on cellular function, health and disease. Our understanding of mammalian enhancer function is limited by the lack of technology that would allow for a rapid and thorough test of their cell type-specific function. Here we describe a novel Cas9-effector system that enables rapid testing and functional annotation of native enhancers in embryonic stem cells. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13112 1 Sample FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE64nnn/GSE64058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA269982 Series Accession: GSE64058 ID: 200064058 3285. Studies of regulation of mouse X inactivation and genes escaping XCI (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus; Mus musculus x Mus spretus Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other 9 related Platforms 70 Samples FTP download: GEO (BED, BIGWIG, GFF, PAIR, TXT, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE59nnn/GSE59779/ Series Accession: GSE59779 ID: 200059779 3286. Discovery of Transcription Factors and Regulatory Regions Driving In Vivo Tumor Development by ATAC-seq and FAIRE-seq Open Chromatin Profiling (Submitter supplied) Genomic enhancers regulate spatio-temporal gene expression by recruiting specific combinations of transcription factors (TFs). When TFs are bound to active regulatory regions, they displace canonical nucleosomes, making these regions biochemically detectable as nucleosome-depleted regions or accessible/open chromatin. Here we ask whether open chromatin profiling can be used to identify the entire repertoire of active promoters and enhancers underlying tissue-specific gene expression during normal development and oncogenesis in vivo. more... Organism: Drosophila melanogaster Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL13304 13 Samples FTP download: GEO (BED, BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE59nnn/GSE59078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA254336 Series Accession: GSE59078 ID: 200059078 3287. ATAC-seq data in mouse and zebrafish limbs (Submitter supplied) Assay for Transposable Accessible Chromatin (ATAC) reveals a genome wide view of areas of open chromatin at very high resolution, which are often associated with regulatory activity. Organism: Mus musculus; Danio rerio Type: Other Platforms: GPL14875 GPL13112 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE61nnn/GSE61065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA260176 Series Accession: GSE61065 ID: 200061065 3288. A negative feedback loop of transcription factors specifies alternative dendritic cell chromatin states (ATAC-Seq) (Submitter supplied) During hematopoiesis, cells originating from the same stem cell reservoir differentiate into distinct cell types. The mechanisms enabling common progenitors to differentiate into distinct cell fates are not fully understood. Here, we identify chromatin-regulating and cell-fate-determining transcription factors (TF) governing dendritic cell (DC) development by annotating the enhancer and promoter landscapes of the DC lineage. more... Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 2 Samples FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE62nnn/GSE62703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA264838 Series Accession: GSE62703 ID: 200062703 3289. MORC1 represses transposable elements in the mouse male germ line (Submitter supplied) The Microrchidia (Morc) family of GHKL ATPases are present in a wide variety of prokaryotic and eukaryotic organisms but are of largely unknown function. Genetic screens in Arabidopsis thaliana have identified Morc genes as important repressors of transposons and other DNA methylated and silent genes. MORC1 deficient mice were previously found to display male-specific germ cell loss and infertility. more... Organism: Mus musculus Type: Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing; Methylation profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL13112 GPL17021 64 Samples FTP download: GEO (BW, TXT, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE63nnn/GSE63048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA267595 Series Accession: GSE63048 ID: 200063048 3290. Tissue-resident macrophage enhancer landscapes are shaped by the local microenvironment [ATAC-seq] (Submitter supplied) Macrophages are hematopoietic cells critical for innate immune defense, but also control organ homeostasis in a tissue-specific manner. Tissue-resident macrophages, therefore, provide a well-defined model to study the impact of ontogeny and microenvironment on chromatin state. Here, we profile the dynamics of four histone modifications across seven tissue-resident macrophage populations, as well as monocytes and neutrophils. more... Organism: Mus musculus Type: Other Platform: GPL18480 17 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE63nnn/GSE63338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA267540 Series Accession: GSE63338 ID: 200063338 3291. Chromatin dynamics of p53 binding sites in IMR90 (Submitter supplied) We report the chromatin modification dynamics at p53 binding sites upon treatment with DMSO or nutlin3-a (5uM) in IMR90 human lung fibroblasts using ChIP-seq and RNA-seq analyses. We assessed the genomewide changes in H3, H3K4me3, H3K4me2, H3K4me1, H3K27ac, H4K16ac, RNA polymerase II, and p53 in response to p53 activation. Organism: Homo sapiens Type: Expression profiling by high throughput sequencing; Genome binding/occupancy profiling by high throughput sequencing; Other Platforms: GPL11154 GPL18573 22 Samples FTP download: GEO (BED, BEDGRAPH, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE58nnn/GSE58740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA253315 Series Accession: GSE58740 ID: 200058740 3292. Genome-wide chromatin analysis of Ewing sarcoma (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platforms: GPL16791 GPL11154 70 Samples FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE61nnn/GSE61953/ Series Accession: GSE61953 ID: 200061953 3293. Genome-wide chromatin analysis of Ewing sarcoma (ATAC-seq) (Submitter supplied) We show that EWS-FLI1, an aberrant transcription factor responsible for the pathogenesis of Ewing sarcoma, reprograms gene regulatory circuits by directly inducing or directly repressing enhancers. At GGAA repeats, which lack regulatory potential in other cell types and are not evolutionarily conserved, EWS- FLI1 multimers potently induce chromatin opening, recruit p300 and WDR5, and create de novo enhancers. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL16791 3 Samples FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE61nnn/GSE61951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA262779 Series Accession: GSE61951 ID: 200061951 3294. Chromatin state dynamics during blood formation (Submitter supplied) This SuperSeries is composed of the SubSeries listed below. Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing; Expression profiling by high throughput sequencing Platform: GPL18480 91 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE60nnn/GSE60103/ Series Accession: GSE60103 ID: 200060103 3295. Chromatin state dynamics during blood formation (ATAC-seq) (Submitter supplied) We develop a new ChIpseq method (iChIP) to profile chromatin states of low cell number samples. We use IChIP to profile the chromatin dynamics during hematopoiesis across 16 different cell types which include the principal hematopoietic progenitors Organism: Mus musculus Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL18480 11 Samples FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE59nnn/GSE59992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA257225 Series Accession: GSE59992 ID: 200059992 3296. Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position (Submitter supplied) We describe an assay for transposase-accessible chromatin using sequencing (ATAC-seq), based on direct in vitro transposition of sequencing adaptors into native chromatin, as a rapid and sensitive method for integrative epigenomic analysis. ATAC-seq captures open chromatin sites using a simple two-step protocol with 500–50,000 cells and reveals the interplay between genomic locations of open chromatin, DNA-binding proteins, individual nucleosomes and chromatin compaction at nucleotide resolution. more... Organism: Homo sapiens Type: Genome binding/occupancy profiling by high throughput sequencing Platform: GPL11154 13 Samples FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/series/GSE47nnn/GSE47753/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=PRJNA207663 Series Accession: GSE47753 ID: 200047753 3297. IEL WT CD69+CD103+ rep3 [ATAC-seq] Organism: Mus musculus Source name: WT CD69+CD103+CD8+ Intraepithelial lymphocytes Platform: GPL13112 Series: GSE184628 GSE184629 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12303094 Sample Accession: GSM5593883 ID: 305593883 3298. IEL WT CD69+CD103+ rep2 [ATAC-seq] Organism: Mus musculus Source name: WT CD69+CD103+CD8+ Intraepithelial lymphocytes Platform: GPL13112 Series: GSE184628 GSE184629 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12303093 Sample Accession: GSM5593882 ID: 305593882 3299. IEL WT CD69+CD103+ rep1 [ATAC-seq] Organism: Mus musculus Source name: WT CD69+CD103+CD8+ Intraepithelial lymphocytes Platform: GPL13112 Series: GSE184628 GSE184629 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5593nnn/GSM5593881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12303092 Sample Accession: GSM5593881 ID: 305593881 3300. IEL Tgfbr2-KO CD69-CD103- rep2 [ATAC-seq] Organism: Mus musculus Source name: Tgfbr2-KO CD69-CD103-CD8+ Intraepithelial lymphocytes Platform: GPL13112 Series: GSE184628 GSE184629 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12303091 Sample Accession: GSM5593880 ID: 305593880 3301. IEL Tgfbr2-KO CD69-CD103- rep1 [ATAC-seq] Organism: Mus musculus Source name: Tgfbr2-KO CD69-CD103-CD8+ Intraepithelial lymphocytes Platform: GPL13112 Series: GSE184628 GSE184629 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5593nnn/GSM5593879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12303090 Sample Accession: GSM5593879 ID: 305593879 3302. IEL Tbet&Tgfbr2-KO CD69+CD103+ [ATAC-seq] Organism: Mus musculus Source name: Tbet&Tgfbr2-KO CD69+CD103+CD8+ Intraepithelial lymphocytes Platform: GPL13112 Series: GSE184628 GSE184629 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5593nnn/GSM5593878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12303089 Sample Accession: GSM5593878 ID: 305593878 3303. IEL Tbet-KO CD69+CD103+ rep2 [ATAC-seq] Organism: Mus musculus Source name: Tbet-KO CD69+CD103+CD8+ Intraepithelial lymphocytes Platform: GPL13112 Series: GSE184628 GSE184629 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12303088 Sample Accession: GSM5593877 ID: 305593877 3304. IEL Tbet-KO CD69+CD103+ rep1 [ATAC-seq] Organism: Mus musculus Source name: Tbet-KO CD69+CD103+CD8+ Intraepithelial lymphocytes Platform: GPL13112 Series: GSE184628 GSE184629 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5593nnn/GSM5593876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12303087 Sample Accession: GSM5593876 ID: 305593876 3305. KO Colon rep 2 (ATAC-seq) Organism: Mus musculus Source name: Intestine epithelium Platform: GPL21103 Series: GSE148690 GSE148695 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4476nnn/GSM4476738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8118329 Sample Accession: GSM4476738 ID: 304476738 3306. KO Colon rep 1 (ATAC-seq) Organism: Mus musculus Source name: Intestine epithelium Platform: GPL21103 Series: GSE148690 GSE148695 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4476nnn/GSM4476737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8118328 Sample Accession: GSM4476737 ID: 304476737 3307. WT Colon rep 2 (ATAC-seq) Organism: Mus musculus Source name: Intestine epithelium Platform: GPL21103 Series: GSE148690 GSE148695 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4476nnn/GSM4476736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8118327 Sample Accession: GSM4476736 ID: 304476736 3308. WT Colon rep 1 (ATAC-seq) Organism: Mus musculus Source name: Intestine epithelium Platform: GPL21103 Series: GSE148690 GSE148695 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4476nnn/GSM4476735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8118326 Sample Accession: GSM4476735 ID: 304476735 3309. WT Ileum rep 2 (ATAC-seq) Organism: Mus musculus Source name: Intestine epithelium Platform: GPL21103 Series: GSE148690 GSE148695 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4476nnn/GSM4476734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8118325 Sample Accession: GSM4476734 ID: 304476734 3310. WT Ileum rep 1 (ATAC-seq) Organism: Mus musculus Source name: Intestine epithelium Platform: GPL21103 Series: GSE148690 GSE148695 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4476nnn/GSM4476733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8118324 Sample Accession: GSM4476733 ID: 304476733 3311. Fos_dox_UO126_rep2 Organism: Mus musculus Source name: ASZ Platform: GPL24247 Series: GSE168376 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5400nnn/GSM5400813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11230180 Sample Accession: GSM5400813 ID: 305400813 3312. Fos_dox_UO126_rep1 Organism: Mus musculus Source name: ASZ Platform: GPL24247 Series: GSE168376 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5400nnn/GSM5400812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11230179 Sample Accession: GSM5400812 ID: 305400812 3313. Fos_dox_DMSO_rep2 Organism: Mus musculus Source name: ASZ Platform: GPL24247 Series: GSE168376 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5400nnn/GSM5400811/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11230178 Sample Accession: GSM5400811 ID: 305400811 3314. Fos_dox_DMSO_rep1 Organism: Mus musculus Source name: ASZ Platform: GPL24247 Series: GSE168376 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5400nnn/GSM5400810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11230177 Sample Accession: GSM5400810 ID: 305400810 3315. Fos_dox_afatinib_rep2 Organism: Mus musculus Source name: ASZ Platform: GPL24247 Series: GSE168376 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5400nnn/GSM5400809/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11230176 Sample Accession: GSM5400809 ID: 305400809 3316. Fos_dox_afatinib_rep1 Organism: Mus musculus Source name: ASZ Platform: GPL24247 Series: GSE168376 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5400nnn/GSM5400808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11230175 Sample Accession: GSM5400808 ID: 305400808 3317. empty_rep2 Organism: Mus musculus Source name: ASZ Platform: GPL24247 Series: GSE168376 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5400nnn/GSM5400807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11230174 Sample Accession: GSM5400807 ID: 305400807 3318. empty_rep1 Organism: Mus musculus Source name: ASZ Platform: GPL24247 Series: GSE168376 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5400nnn/GSM5400806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11230173 Sample Accession: GSM5400806 ID: 305400806 3319. ATAC-seq_MDBK IFNG 4h rep2 Organism: Bos taurus Source name: MDBK Platform: GPL26012 Series: GSE185079 GSE185082 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5605nnn/GSM5605770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12414440 Sample Accession: GSM5605770 ID: 305605770 3320. ATAC-seq_MDBK IFNG 4h rep1 Organism: Bos taurus Source name: MDBK Platform: GPL26012 Series: GSE185079 GSE185082 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5605nnn/GSM5605769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12414439 Sample Accession: GSM5605769 ID: 305605769 3321. ATAC-seq_MDBK UT rep2 Organism: Bos taurus Source name: MDBK Platform: GPL26012 Series: GSE185079 GSE185082 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5605nnn/GSM5605768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12414438 Sample Accession: GSM5605768 ID: 305605768 3322. ATAC-seq_MDBK UT rep1 Organism: Bos taurus Source name: MDBK Platform: GPL26012 Series: GSE185079 GSE185082 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5605nnn/GSM5605767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12414437 Sample Accession: GSM5605767 ID: 305605767 3323. ATAC-seq_HCT116OxR Organism: Homo sapiens Source name: HCT116 cells Platform: GPL11154 Series: GSE138656 GSE138657 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4115nnn/GSM4115629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6971481 Sample Accession: GSM4115629 ID: 304115629 3324. ATAC-seq_HCT116 Organism: Homo sapiens Source name: HCT116 cells Platform: GPL11154 Series: GSE138656 GSE138657 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4115nnn/GSM4115628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6971480 Sample Accession: GSM4115628 ID: 304115628 3325. P7 mice fibroblasts ATAC-seq_rep3 Organism: Mus musculus Source name: P7 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407449 Sample Accession: GSM5436417 ID: 305436417 3326. P7 mice fibroblasts ATAC-seq_rep2 Organism: Mus musculus Source name: P7 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407448 Sample Accession: GSM5436416 ID: 305436416 3327. P7 mice fibroblasts ATAC-seq_rep1 Organism: Mus musculus Source name: P7 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407447 Sample Accession: GSM5436415 ID: 305436415 3328. P5 mice fibroblasts ATAC-seq_rep3 Organism: Mus musculus Source name: P5 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407446 Sample Accession: GSM5436414 ID: 305436414 3329. P5 mice fibroblasts ATAC-seq_rep2 Organism: Mus musculus Source name: P5 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407445 Sample Accession: GSM5436413 ID: 305436413 3330. P5 mice fibroblasts ATAC-seq_rep1 Organism: Mus musculus Source name: P5 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407444 Sample Accession: GSM5436412 ID: 305436412 3331. P3 mice fibroblasts ATAC-seq_rep3 Organism: Mus musculus Source name: P3 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407443 Sample Accession: GSM5436411 ID: 305436411 3332. P3 mice fibroblasts ATAC-seq_rep2 Organism: Mus musculus Source name: P3 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407442 Sample Accession: GSM5436410 ID: 305436410 3333. P3 mice fibroblasts ATAC-seq_rep1 Organism: Mus musculus Source name: P3 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407441 Sample Accession: GSM5436409 ID: 305436409 3334. P1 mice fibroblasts ATAC-seq_rep4 Organism: Mus musculus Source name: P1 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407440 Sample Accession: GSM5436408 ID: 305436408 3335. P1 mice fibroblasts ATAC-seq_rep3 Organism: Mus musculus Source name: P1 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407439 Sample Accession: GSM5436407 ID: 305436407 3336. P1 mice fibroblasts ATAC-seq_rep2 Organism: Mus musculus Source name: P1 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407438 Sample Accession: GSM5436406 ID: 305436406 3337. P1 mice fibroblasts ATAC-seq_rep1 Organism: Mus musculus Source name: P1 mice fibroblasts ATAC-seq Platform: GPL21273 Series: GSE179880 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5436nnn/GSM5436405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11407437 Sample Accession: GSM5436405 ID: 305436405 3338. Embryonic Stem Cell dervived Hypothalamus-like Neurons (ATAC-Seq) Replicate 6 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508305 Sample Accession: GSM4602967 ID: 304602967 3339. Embryonic Stem Cell dervived Hypothalamus-like Neurons (ATAC-Seq) Replicate 5 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508304 Sample Accession: GSM4602966 ID: 304602966 3340. Embryonic Stem Cell dervived Hypothalamus-like Neurons (ATAC-Seq) Replicate 4 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508303 Sample Accession: GSM4602965 ID: 304602965 3341. Embryonic Stem Cell dervived Hypothalamus-like Neurons (ATAC-Seq) Replicate 3 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508302 Sample Accession: GSM4602964 ID: 304602964 3342. Embryonic Stem Cell dervived Hypothalamus-like Neurons (ATAC-Seq) Replicate 2 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508301 Sample Accession: GSM4602963 ID: 304602963 3343. Embryonic Stem Cell dervived Hypothalamus-like Neurons (ATAC-Seq) Replicate 1 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508300 Sample Accession: GSM4602962 ID: 304602962 3344. Embryonic Stem Cell dervived Hypothalamic Progenitor-like Cells (ATAC-Seq) Replicate 4 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508299 Sample Accession: GSM4602961 ID: 304602961 3345. Embryonic Stem Cell dervived Hypothalamic Progenitor-like Cells (ATAC-Seq) Replicate 3 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508298 Sample Accession: GSM4602960 ID: 304602960 3346. Embryonic Stem Cell dervived Hypothalamic Progenitor-like Cells (ATAC-Seq) Replicate 2 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508297 Sample Accession: GSM4602959 ID: 304602959 3347. Embryonic Stem Cell dervived Hypothalamic Progenitor-like Cells (ATAC-Seq) Replicate 1 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508296 Sample Accession: GSM4602958 ID: 304602958 3348. Embryonic Stem Cells (ATAC-Seq) Replicate 4 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508295 Sample Accession: GSM4602957 ID: 304602957 3349. Embryonic Stem Cells (ATAC-Seq) Replicate 3 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508294 Sample Accession: GSM4602956 ID: 304602956 3350. Embryonic Stem Cells (ATAC-Seq) Replicate 2 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508293 Sample Accession: GSM4602955 ID: 304602955 3351. Embryonic Stem Cells (ATAC-Seq) Replicate 1 Organism: Homo sapiens Source name: WiCell Platform: GPL24676 Series: GSE152090 GSE152098 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4602nnn/GSM4602954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8508292 Sample Accession: GSM4602954 ID: 304602954 3352. CM_TAM2_Day5_Rep2 Organism: Mus musculus Source name: Heart tissue (Cardiomyocyte cells) Platform: GPL19057 Series: GSE183343 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12007392 Sample Accession: GSM5555846 ID: 305555846 3353. CM_TAM1_Day5_Rep1 Organism: Mus musculus Source name: Heart tissue (Cardiomyocyte cells) Platform: GPL19057 Series: GSE183343 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12007391 Sample Accession: GSM5555845 ID: 305555845 3354. CM_VEH2_Day5_Rep2 Organism: Mus musculus Source name: Heart tissue (Cardiomyocyte cells) Platform: GPL19057 Series: GSE183343 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12007390 Sample Accession: GSM5555844 ID: 305555844 3355. CM_VEH1_Day5_Rep1 Organism: Mus musculus Source name: Heart tissue (Cardiomyocyte cells) Platform: GPL19057 Series: GSE183343 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12007389 Sample Accession: GSM5555843 ID: 305555843 3356. K562 ++ untreated ATAC-seq [WT_ut_2_S2] Organism: Homo sapiens Source name: K562 ++ untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840282 Sample Accession: GSM4698685 ID: 304698685 3357. K562 ++ untreated ATAC-seq [WT_ut_1_S1] Organism: Homo sapiens Source name: K562 ++ untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840281 Sample Accession: GSM4698684 ID: 304698684 3358. K562 ++ hemin ATAC-seq [WT_h_2_S20] Organism: Homo sapiens Source name: K562 ++ hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840280 Sample Accession: GSM4698683 ID: 304698683 3359. K562 ++ hemin ATAC-seq [WT_h_1_S19] Organism: Homo sapiens Source name: K562 ++ hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840279 Sample Accession: GSM4698682 ID: 304698682 3360. K562 ++ untreated ATAC-seq [P_ut_2_S18] Organism: Homo sapiens Source name: K562 ++ untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840278 Sample Accession: GSM4698681 ID: 304698681 3361. K562 ++ untreated ATAC-seq [P_ut_1_S17] Organism: Homo sapiens Source name: K562 ++ untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840277 Sample Accession: GSM4698680 ID: 304698680 3362. K562 ++ hemin ATAC-seq [P_h_2_S36] Organism: Homo sapiens Source name: K562 ++ hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840276 Sample Accession: GSM4698679 ID: 304698679 3363. K562 ++ hemin ATAC-seq [P_h_1_S35] Organism: Homo sapiens Source name: K562 ++ hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840275 Sample Accession: GSM4698678 ID: 304698678 3364. K562 -- untreated ATAC-seq [BH_ut_2_S10] Organism: Homo sapiens Source name: K562 -- untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840274 Sample Accession: GSM4698677 ID: 304698677 3365. K562 -- untreated ATAC-seq [BH_ut_1_S9] Organism: Homo sapiens Source name: K562 -- untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840273 Sample Accession: GSM4698676 ID: 304698676 3366. K562 -- hemin ATAC-seq [BH_h_2_S28] Organism: Homo sapiens Source name: K562 -- hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840272 Sample Accession: GSM4698675 ID: 304698675 3367. K562 -- hemin ATAC-seq [BH_h_1_S27] Organism: Homo sapiens Source name: K562 -- hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840271 Sample Accession: GSM4698674 ID: 304698674 3368. K562 ++ untreated ATAC-seq [AR_ut_2_S4] Organism: Homo sapiens Source name: K562 ++ untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840270 Sample Accession: GSM4698673 ID: 304698673 3369. K562 ++ untreated ATAC-seq [AR_ut_1_S3] Organism: Homo sapiens Source name: K562 ++ untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840269 Sample Accession: GSM4698672 ID: 304698672 3370. K562 ++ hemin ATAC-seq [AR_h_2_S22] Organism: Homo sapiens Source name: K562 ++ hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840268 Sample Accession: GSM4698671 ID: 304698671 3371. K562 ++ hemin ATAC-seq [AR_h_1_S21] Organism: Homo sapiens Source name: K562 ++ hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840267 Sample Accession: GSM4698670 ID: 304698670 3372. K562 -- untreated ATAC-seq [AL_ut_2_S14] Organism: Homo sapiens Source name: K562 -- untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840266 Sample Accession: GSM4698669 ID: 304698669 3373. K562 -- untreated ATAC-seq [AL_ut_1_S13] Organism: Homo sapiens Source name: K562 -- untreated Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840265 Sample Accession: GSM4698668 ID: 304698668 3374. K562 -- hemin ATAC-seq [AL_h_2_S24] Organism: Homo sapiens Source name: K562 -- hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840264 Sample Accession: GSM4698667 ID: 304698667 3375. K562 -- hemin ATAC-seq [AL_h_1_S23] Organism: Homo sapiens Source name: K562 -- hemin Platform: GPL18573 Series: GSE131649 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8840263 Sample Accession: GSM4698666 ID: 304698666 3376. UTXKO2 [ATAC-seq] Organism: Mus musculus Source name: Brown adipose tissue Platform: GPL13112 Series: GSE175605 GSE175608 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5342nnn/GSM5342430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11003076 Sample Accession: GSM5342430 ID: 305342430 3377. UTXKO1 [ATAC-seq] Organism: Mus musculus Source name: Brown adipose tissue Platform: GPL13112 Series: GSE175605 GSE175608 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5342nnn/GSM5342429/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11003075 Sample Accession: GSM5342429 ID: 305342429 3378. UTXWT3 [ATAC-seq] Organism: Mus musculus Source name: Brown adipose tissue Platform: GPL13112 Series: GSE175605 GSE175608 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5342nnn/GSM5342428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11003074 Sample Accession: GSM5342428 ID: 305342428 3379. UTXWT2 [ATAC-seq] Organism: Mus musculus Source name: Brown adipose tissue Platform: GPL13112 Series: GSE175605 GSE175608 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5342nnn/GSM5342427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11003073 Sample Accession: GSM5342427 ID: 305342427 3380. SCH-7729824 LPS 24h [S2518_Nr51] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439326 Sample Accession: GSM5452545 ID: 305452545 3381. DMSO LPS 24H [S2518_Nr50] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439325 Sample Accession: GSM5452544 ID: 305452544 3382. SCH-772984 LPS 4h [S2518_Nr49] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439324 Sample Accession: GSM5452543 ID: 305452543 3383. DMSO LPS 4H [S2518_Nr48] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439323 Sample Accession: GSM5452542 ID: 305452542 3384. SCH-772984 LPS 1h [S2518_Nr47] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439322 Sample Accession: GSM5452541 ID: 305452541 3385. DMSO LPS 1H [S2518_Nr46] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439321 Sample Accession: GSM5452540 ID: 305452540 3386. SCH-772984 [S2518_Nr45] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439320 Sample Accession: GSM5452539 ID: 305452539 3387. DMSO [S2518_Nr44] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439319 Sample Accession: GSM5452538 ID: 305452538 3388. SCH-7729824 LPS 24h [S2518_Nr43] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439318 Sample Accession: GSM5452537 ID: 305452537 3389. DMSO LPS 24H [S2518_Nr42] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439317 Sample Accession: GSM5452536 ID: 305452536 3390. SCH-772984 LPS 4h [S2518_Nr41] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439316 Sample Accession: GSM5452535 ID: 305452535 3391. DMSO LPS 4H [S2518_Nr40] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439315 Sample Accession: GSM5452534 ID: 305452534 3392. SCH-772984 LPS 1h [S2518_Nr39] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439314 Sample Accession: GSM5452533 ID: 305452533 3393. DMSO LPS 1H [S2518_Nr38] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439313 Sample Accession: GSM5452532 ID: 305452532 3394. SCH-772984 [S2518_Nr37] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439312 Sample Accession: GSM5452531 ID: 305452531 3395. DMSO [S2518_Nr36] Organism: Mus musculus Source name: cell_line Platform: GPL24247 Series: GSE180085 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5452nnn/GSM5452530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11439311 Sample Accession: GSM5452530 ID: 305452530 3396. single-cell combinatorial indexing ATAC-seq experiment 3 Organism: Danio rerio Source name: whole embryo Platform: GPL20828 Series: GSE152423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8541155 Sample Accession: GSM4615138 ID: 304615138 3397. single-cell combinatorial indexing ATAC-seq experiment 2 Organism: Danio rerio Source name: whole embryo Platform: GPL20828 Series: GSE152423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8541154 Sample Accession: GSM4615137 ID: 304615137 3398. single-cell combinatorial indexing ATAC-seq experiment 1 Organism: Danio rerio Source name: whole embryo Platform: GPL20828 Series: GSE152423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8541153 Sample Accession: GSM4615136 ID: 304615136 3399. WT_ZT16_ATACseq_2 Organism: Mus musculus Source name: liver Platform: GPL21103 Series: GSE157452 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10829289 Sample Accession: GSM5288595 ID: 305288595 3400. WT_ZT16_ATACseq_1 Organism: Mus musculus Source name: liver Platform: GPL21103 Series: GSE157452 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10829288 Sample Accession: GSM5288594 ID: 305288594 3401. WT_ZT6_ATACseq_2 Organism: Mus musculus Source name: liver Platform: GPL21103 Series: GSE157452 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10829287 Sample Accession: GSM5288593 ID: 305288593 3402. WT_ZT6_ATACseq_1 Organism: Mus musculus Source name: liver Platform: GPL21103 Series: GSE157452 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10829286 Sample Accession: GSM5288592 ID: 305288592 3403. ATAC-seq: EBNA2- (P3HR1) EBV infected Ramos B cells pooled replicates Organism: Homo sapiens Source name: EBNA2- (P3HR1) EBV infected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096799 Sample Accession: GSM5365322 ID: 305365322 3404. ATAC-seq: EBNA2+ (B95.8) EBV infected Ramos B cells pooled replicates Organism: Homo sapiens Source name: EBNA2+ (B95.8) EBV infected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096798 Sample Accession: GSM5365321 ID: 305365321 3405. ATAC-seq: uninfected Ramos B cells pooled replicates Organism: Homo sapiens Source name: Uninfected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096797 Sample Accession: GSM5365320 ID: 305365320 3406. ATAC-seq: EBNA2- (P3HR1) EBV infected Ramos B cells replicate 2 Organism: Homo sapiens Source name: EBNA2- (P3HR1) EBV infected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096796 Sample Accession: GSM5365319 ID: 305365319 3407. ATAC-seq: EBNA2- (P3HR1) EBV infected Ramos B cells replicate 1 Organism: Homo sapiens Source name: EBNA2- (P3HR1) EBV infected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096795 Sample Accession: GSM5365318 ID: 305365318 3408. ATAC-seq: EBNA2+ (B95.8) EBV infected Ramos B cells replicate 2 Organism: Homo sapiens Source name: EBNA2+ (B95.8) EBV infected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096794 Sample Accession: GSM5365317 ID: 305365317 3409. ATAC-seq: EBNA2+ (B95.8) EBV infected Ramos B cells replicate 1 Organism: Homo sapiens Source name: EBNA2+ (B95.8) EBV infected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096793 Sample Accession: GSM5365316 ID: 305365316 3410. ATAC-seq: uninfected Ramos B cells replicate 2 Organism: Homo sapiens Source name: Uninfected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096792 Sample Accession: GSM5365315 ID: 305365315 3411. ATAC-seq: uninfected Ramos B cells replicate 1 Organism: Homo sapiens Source name: Uninfected Ramos B cells Platform: GPL24676 Series: GSE148396 GSE176421 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5365nnn/GSM5365314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11096791 Sample Accession: GSM5365314 ID: 305365314 3412. CTX_HOM_Litter2_65 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714895 Sample Accession: GSM5271281 ID: 305271281 3413. CTX_HET_Litter2_64 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714894 Sample Accession: GSM5271280 ID: 305271280 3414. CTX_HOM_Litter1_61 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714893 Sample Accession: GSM5271279 ID: 305271279 3415. CTX_WT_Litter1_57 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714892 Sample Accession: GSM5271278 ID: 305271278 3416. CTX_HOM_Litter1_54 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714891 Sample Accession: GSM5271277 ID: 305271277 3417. CTX_HET_Litter2_49 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714890 Sample Accession: GSM5271276 ID: 305271276 3418. CTX_WT_Litter1_46 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714889 Sample Accession: GSM5271275 ID: 305271275 3419. CTX_WT_Litter1_43 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714888 Sample Accession: GSM5271274 ID: 305271274 3420. CTX_HOM_Litter1_40 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714887 Sample Accession: GSM5271273 ID: 305271273 3421. CTX_HET_Litter1_34 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714886 Sample Accession: GSM5271272 ID: 305271272 3422. CTX_HET_Litter1_31 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714885 Sample Accession: GSM5271271 ID: 305271271 3423. CTX_HET_Litter1_27 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714884 Sample Accession: GSM5271270 ID: 305271270 3424. CTX_WT_Litter2_25 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714883 Sample Accession: GSM5271269 ID: 305271269 3425. CTX_HOM_Litter1_20 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714882 Sample Accession: GSM5271268 ID: 305271268 3426. CTX_WT_Litter2_13 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714881 Sample Accession: GSM5271267 ID: 305271267 3427. CTX_WT_Litter1_10 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714880 Sample Accession: GSM5271266 ID: 305271266 3428. CTX_HOM_Litter2_06 [ATAC-Seq] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714879 Sample Accession: GSM5271265 ID: 305271265 3429. Adult_PFC_WT_Male_62 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714878 Sample Accession: GSM5271264 ID: 305271264 3430. Adult_PFC_WT_Female_58 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714877 Sample Accession: GSM5271263 ID: 305271263 3431. Adult_PFC_Het_Female_50 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714876 Sample Accession: GSM5271262 ID: 305271262 3432. Adult_PFC_Het_Male_47 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714875 Sample Accession: GSM5271261 ID: 305271261 3433. Adult_PFC_Het_Female_44 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714874 Sample Accession: GSM5271260 ID: 305271260 3434. Adult_PFC_Het_Male_41 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714873 Sample Accession: GSM5271259 ID: 305271259 3435. Adult_PFC_WT_Female_35 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714872 Sample Accession: GSM5271258 ID: 305271258 3436. Adult_PFC_WT_Male_28 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714871 Sample Accession: GSM5271257 ID: 305271257 3437. Adult_PFC_Het_Female_21 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714870 Sample Accession: GSM5271256 ID: 305271256 3438. Adult_PFC_Het_Male_11 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714869 Sample Accession: GSM5271255 ID: 305271255 3439. Adult_PFC_WT_Female_07 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714868 Sample Accession: GSM5271254 ID: 305271254 3440. Adult_PFC_WT_Male_01 [ATAC-Seq] Organism: Mus musculus Source name: Prefrontal Cortex Platform: GPL24247 Series: GSE173588 GSE173943 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10714867 Sample Accession: GSM5271253 ID: 305271253 3441. ATAC-Seq frontal_cortex_UMB4540_rep2 Organism: Homo sapiens Source name: frontal cortex Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287238 Sample Accession: GSM5589415 ID: 305589415 3442. ATAC-Seq frontal_cortex_UMB4540_rep1 Organism: Homo sapiens Source name: frontal cortex Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287237 Sample Accession: GSM5589414 ID: 305589414 3443. ATAC-Seq vagina_SM-A9HOS Organism: Homo sapiens Source name: vagina Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287236 Sample Accession: GSM5589413 ID: 305589413 3444. ATAC-Seq uterus_SM-IOBHX Organism: Homo sapiens Source name: uterus Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287235 Sample Accession: GSM5589412 ID: 305589412 3445. ATAC-Seq uterus_SM-A87A2 Organism: Homo sapiens Source name: uterus Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287234 Sample Accession: GSM5589411 ID: 305589411 3446. ATAC-Seq thyroid_SM-JF1O4 Organism: Homo sapiens Source name: thyroid Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287233 Sample Accession: GSM5589410 ID: 305589410 3447. ATAC-Seq thyroid_SM-IOBHW Organism: Homo sapiens Source name: thyroid Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287232 Sample Accession: GSM5589409 ID: 305589409 3448. ATAC-Seq thyroid_SM-C1MKY Organism: Homo sapiens Source name: thyroid Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287231 Sample Accession: GSM5589408 ID: 305589408 3449. ATAC-Seq stomach_SM-JF1O3 Organism: Homo sapiens Source name: stomach Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287230 Sample Accession: GSM5589407 ID: 305589407 3450. ATAC-Seq stomach_SM-JF1NP Organism: Homo sapiens Source name: stomach Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287229 Sample Accession: GSM5589406 ID: 305589406 3451. ATAC-Seq stomach_SM-IOBHV Organism: Homo sapiens Source name: stomach Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287228 Sample Accession: GSM5589405 ID: 305589405 3452. ATAC-Seq stomach_SM-CHLWL Organism: Homo sapiens Source name: stomach Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287227 Sample Accession: GSM5589404 ID: 305589404 3453. ATAC-Seq small_intestine_SM-JF1O2 Organism: Homo sapiens Source name: small intestine terminal ileum Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287226 Sample Accession: GSM5589403 ID: 305589403 3454. ATAC-Seq small_intestine_SM-ADA5F Organism: Homo sapiens Source name: small intestine terminal ileum Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287225 Sample Accession: GSM5589402 ID: 305589402 3455. ATAC-Seq small_intestine_SM-A62GO Organism: Homo sapiens Source name: small intestine terminal ileum Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589401/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287224 Sample Accession: GSM5589401 ID: 305589401 3456. ATAC-Seq skin_sun_exposed_SM-JF1NT Organism: Homo sapiens Source name: skin sun exposed Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287223 Sample Accession: GSM5589400 ID: 305589400 3457. ATAC-Seq skin_sun_exposed_SM-IQYCP Organism: Homo sapiens Source name: skin sun exposed Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287222 Sample Accession: GSM5589399 ID: 305589399 3458. ATAC-Seq skin_sun_exposed_SM-IOBHU Organism: Homo sapiens Source name: skin sun exposed Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287221 Sample Accession: GSM5589398 ID: 305589398 3459. ATAC-Seq skin_sun_exposed_SM-ADYHK Organism: Homo sapiens Source name: skin sun exposed Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287220 Sample Accession: GSM5589397 ID: 305589397 3460. ATAC-Seq skin_SM-JF1O1 Organism: Homo sapiens Source name: skin non sun exposed Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287219 Sample Accession: GSM5589396 ID: 305589396 3461. ATAC-Seq skin_SM-IOBHT Organism: Homo sapiens Source name: skin non sun exposed Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287218 Sample Accession: GSM5589395 ID: 305589395 3462. ATAC-Seq pancreas_SM-JF1O6 Organism: Homo sapiens Source name: pancreas Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287217 Sample Accession: GSM5589394 ID: 305589394 3463. ATAC-Seq pancreas_SM-JF1NS Organism: Homo sapiens Source name: pancreas Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287216 Sample Accession: GSM5589393 ID: 305589393 3464. ATAC-Seq pancreas_SM-IOBHS Organism: Homo sapiens Source name: pancreas Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287215 Sample Accession: GSM5589392 ID: 305589392 3465. ATAC-Seq pancreas_SM-ADRUQ Organism: Homo sapiens Source name: pancreas Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287214 Sample Accession: GSM5589391 ID: 305589391 3466. ATAC-Seq ovary_SM-IOBHR Organism: Homo sapiens Source name: ovary Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287213 Sample Accession: GSM5589390 ID: 305589390 3467. ATAC-Seq nerve_tibial_SM-IOBHQ Organism: Homo sapiens Source name: tibial nerve Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287212 Sample Accession: GSM5589389 ID: 305589389 3468. ATAC-Seq nerve_tibial_SM-CP2V6 Organism: Homo sapiens Source name: tibial nerve Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589388/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287211 Sample Accession: GSM5589388 ID: 305589388 3469. ATAC-Seq nerve_tibial_SM-CHLWU Organism: Homo sapiens Source name: tibial nerve Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589387/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287210 Sample Accession: GSM5589387 ID: 305589387 3470. ATAC-Seq muscle_SM-JF1O9 Organism: Homo sapiens Source name: gastrocnemius muscle Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287209 Sample Accession: GSM5589386 ID: 305589386 3471. ATAC-Seq muscle_SM-IOBHP Organism: Homo sapiens Source name: gastrocnemius muscle Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287208 Sample Accession: GSM5589385 ID: 305589385 3472. ATAC-Seq muscle_SM-C1PWV Organism: Homo sapiens Source name: gastrocnemius muscle Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287207 Sample Accession: GSM5589384 ID: 305589384 3473. ATAC-Seq muscle_SM-ADA6L Organism: Homo sapiens Source name: gastrocnemius muscle Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287205 Sample Accession: GSM5589382 ID: 305589382 3474. ATAC-Seq mammary_tissue_SM-JF1NV Organism: Homo sapiens Source name: breast mammary tissue Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287204 Sample Accession: GSM5589381 ID: 305589381 3475. ATAC-Seq mammary_tissue_SM-IOBHL Organism: Homo sapiens Source name: breast mammary tissue Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287203 Sample Accession: GSM5589380 ID: 305589380 3476. ATAC-Seq lung_SM-JF1NZ Organism: Homo sapiens Source name: lung Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287202 Sample Accession: GSM5589379 ID: 305589379 3477. ATAC-Seq lung_SM-ACCPU Organism: Homo sapiens Source name: lung Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287201 Sample Accession: GSM5589378 ID: 305589378 3478. ATAC-Seq lung_SM-A8WNH Organism: Homo sapiens Source name: lung Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287200 Sample Accession: GSM5589377 ID: 305589377 3479. ATAC-Seq lung_SM-A62E9 Organism: Homo sapiens Source name: lung Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287199 Sample Accession: GSM5589376 ID: 305589376 3480. ATAC-Seq liver_SM-A8WNZ Organism: Homo sapiens Source name: liver Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287198 Sample Accession: GSM5589375 ID: 305589375 3481. ATAC-Seq heart_lv_SM-JF1NY Organism: Homo sapiens Source name: heart left ventricle Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287197 Sample Accession: GSM5589374 ID: 305589374 3482. ATAC-Seq heart_lv_SM-IOBHO Organism: Homo sapiens Source name: heart left ventricle Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287196 Sample Accession: GSM5589373 ID: 305589373 3483. ATAC-Seq heart_atrial_appendage_SM-JF1NX Organism: Homo sapiens Source name: heart right atrial appendage Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287195 Sample Accession: GSM5589372 ID: 305589372 3484. ATAC-Seq heart_atrial_appendage_SM-IOBHN Organism: Homo sapiens Source name: heart right atrial appendage Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287194 Sample Accession: GSM5589371 ID: 305589371 3485. ATAC-Seq esophagus_muscularis_SM-IQYD1 Organism: Homo sapiens Source name: esophagus muscularis Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589370/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287193 Sample Accession: GSM5589370 ID: 305589370 3486. ATAC-Seq esophagus_muscularis_SM-IOBHM Organism: Homo sapiens Source name: esophagus muscularis Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589369/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287192 Sample Accession: GSM5589369 ID: 305589369 3487. ATAC-Seq esophagus_muscularis_SM-CSSCV Organism: Homo sapiens Source name: esophagus muscularis Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589368/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287191 Sample Accession: GSM5589368 ID: 305589368 3488. ATAC-Seq esophagus_muscularis_SM-A8CPH Organism: Homo sapiens Source name: esophagus muscularis Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287190 Sample Accession: GSM5589367 ID: 305589367 3489. ATAC-Seq esophagus_mucosa_SM-AZPYJ Organism: Homo sapiens Source name: esophagus mucosa Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287189 Sample Accession: GSM5589366 ID: 305589366 3490. ATAC-Seq esophagus_mucosa_SM-A9VPA Organism: Homo sapiens Source name: esophagus mucosa Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287188 Sample Accession: GSM5589365 ID: 305589365 3491. ATAC-Seq esophagus_mucosa_SM-A9HOR Organism: Homo sapiens Source name: esophagus mucosa Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287187 Sample Accession: GSM5589364 ID: 305589364 3492. ATAC-Seq esophagus_ge_junction_SM-IOERG Organism: Homo sapiens Source name: esophagus gastroesophageal junction Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589363/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287186 Sample Accession: GSM5589363 ID: 305589363 3493. ATAC-Seq esophagus_ge_junction_SM-CTD24 Organism: Homo sapiens Source name: esophagus gastroesophageal junction Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589362/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287185 Sample Accession: GSM5589362 ID: 305589362 3494. ATAC-Seq colon_transverse_SM-BZ2ZS Organism: Homo sapiens Source name: transverse colon Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589360/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287183 Sample Accession: GSM5589360 ID: 305589360 3495. ATAC-Seq colon_transverse_SM-ACCQ1 Organism: Homo sapiens Source name: transverse colon Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287182 Sample Accession: GSM5589359 ID: 305589359 3496. ATAC-Seq colon_transverse_SM-A9VP4 Organism: Homo sapiens Source name: transverse colon Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287181 Sample Accession: GSM5589358 ID: 305589358 3497. ATAC-Seq colon_transverse_SM-A9HOW Organism: Homo sapiens Source name: transverse colon Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589357/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287180 Sample Accession: GSM5589357 ID: 305589357 3498. ATAC-Seq colon_sigmoid_SM-JF1O8 Organism: Homo sapiens Source name: sigmoid colon Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589356/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287179 Sample Accession: GSM5589356 ID: 305589356 3499. ATAC-Seq colon_sigmoid_SM-AZPYO Organism: Homo sapiens Source name: sigmoid colon Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589355/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287178 Sample Accession: GSM5589355 ID: 305589355 3500. ATAC-Seq artery_tibial_SM-IOBHK Organism: Homo sapiens Source name: tibial artery Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589354/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287177 Sample Accession: GSM5589354 ID: 305589354 3501. ATAC-Seq artery_tibial_SM-CHLWW Organism: Homo sapiens Source name: tibial artery Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589353/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287176 Sample Accession: GSM5589353 ID: 305589353 3502. ATAC-Seq artery_aorta_SM-JF1NU Organism: Homo sapiens Source name: aorta Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589352/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287175 Sample Accession: GSM5589352 ID: 305589352 3503. ATAC-Seq artery_aorta_SM-CR89M Organism: Homo sapiens Source name: aorta Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287174 Sample Accession: GSM5589351 ID: 305589351 3504. ATAC-Seq artery_aorta_SM-C1PX3 Organism: Homo sapiens Source name: aorta Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287173 Sample Accession: GSM5589350 ID: 305589350 3505. ATAC-Seq artery_aorta_SM-C1MLC Organism: Homo sapiens Source name: aorta Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589349/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287172 Sample Accession: GSM5589349 ID: 305589349 3506. ATAC-Seq adrenal_gland_SM-A8WNO Organism: Homo sapiens Source name: adrenal gland Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287171 Sample Accession: GSM5589348 ID: 305589348 3507. ATAC-Seq adipose_omentum_SM-IOBHJ Organism: Homo sapiens Source name: adipose omentum Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589347/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287170 Sample Accession: GSM5589347 ID: 305589347 3508. ATAC-Seq adipose_omentum_SM-CSSD4 Organism: Homo sapiens Source name: adipose omentum Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287169 Sample Accession: GSM5589346 ID: 305589346 3509. ATAC-Seq adipose_omentum_SM-CHZRM Organism: Homo sapiens Source name: adipose omentum Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287168 Sample Accession: GSM5589345 ID: 305589345 3510. ATAC-Seq adipose_omentum_SM-ADYHB Organism: Homo sapiens Source name: adipose omentum Platform: GPL20301 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287167 Sample Accession: GSM5589344 ID: 305589344 3511. ATAC-Seq muscle_SM-C1MKW Organism: Homo sapiens Source name: gastrocnemius muscle Platform: GPL18573 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287206 Sample Accession: GSM5589383 ID: 305589383 3512. ATAC-Seq colon_transverse_SM-CSSDA Organism: Homo sapiens Source name: transverse colon Platform: GPL18573 Series: GSE184462 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5589nnn/GSM5589361/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12287184 Sample Accession: GSM5589361 ID: 305589361 3513. Prog_P013_t (ATAC-Seq) Organism: Homo sapiens Source name: P013 Platform: GPL20795 Series: GSE169246 Sample Accession: GSM5188445 ID: 305188445 3514. Post_P012_t (ATAC-Seq) Organism: Homo sapiens Source name: P012 Platform: GPL20795 Series: GSE169246 Sample Accession: GSM5188444 ID: 305188444 3515. Pre_P020_t (ATAC-Seq) Organism: Homo sapiens Source name: P020 Platform: GPL20795 Series: GSE169246 Sample Accession: GSM5188443 ID: 305188443 3516. Pre_P023_t (ATAC-Seq) Organism: Homo sapiens Source name: P023 Platform: GPL20795 Series: GSE169246 Sample Accession: GSM5188442 ID: 305188442 3517. Pre_P012_t (ATAC-Seq) Organism: Homo sapiens Source name: P012 Platform: GPL20795 Series: GSE169246 Sample Accession: GSM5188441 ID: 305188441 3518. HI576-Nfatc2 Organism: Homo sapiens Source name: Human pancreatic islets Platform: GPL24676 Series: GSE158495 GSE158499 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183520 Sample Accession: GSM4801730 ID: 304801730 3519. HI576-GFP Organism: Homo sapiens Source name: Human pancreatic islets Platform: GPL24676 Series: GSE158495 GSE158499 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183519 Sample Accession: GSM4801729 ID: 304801729 3520. HI575-Nfatc2 Organism: Homo sapiens Source name: Human pancreatic islets Platform: GPL24676 Series: GSE158495 GSE158499 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183518 Sample Accession: GSM4801728 ID: 304801728 3521. HI575-GFP Organism: Homo sapiens Source name: Human pancreatic islets Platform: GPL24676 Series: GSE158495 GSE158499 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183517 Sample Accession: GSM4801727 ID: 304801727 3522. HI574-Nfatc2 Organism: Homo sapiens Source name: Human pancreatic islets Platform: GPL24676 Series: GSE158495 GSE158499 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183516 Sample Accession: GSM4801726 ID: 304801726 3523. HI574-GFP Organism: Homo sapiens Source name: Human pancreatic islets Platform: GPL24676 Series: GSE158495 GSE158499 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183515 Sample Accession: GSM4801725 ID: 304801725 3524. OCI-Ly7_OCT2i_rep1 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123176 Sample Accession: GSM5571604 ID: 305571604 3525. OCI-Ly7_OCABi_rep3 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123175 Sample Accession: GSM5571603 ID: 305571603 3526. SUDH4_Control_rep1 [ATAC-seq] Organism: Homo sapiens Source name: SUDH4 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123174 Sample Accession: GSM5571602 ID: 305571602 3527. SUDH4_Control_rep2 [ATAC-seq] Organism: Homo sapiens Source name: SUDH4 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123173 Sample Accession: GSM5571601 ID: 305571601 3528. OCI-Ly7_Control_rep3 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123172 Sample Accession: GSM5571600 ID: 305571600 3529. OCI-Ly7_OCABi_rep1 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123171 Sample Accession: GSM5571599 ID: 305571599 3530. OCI-Ly7_OCABi_rep4 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123170 Sample Accession: GSM5571598 ID: 305571598 3531. OCI-Ly7_OCABi_rep2 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123169 Sample Accession: GSM5571597 ID: 305571597 3532. OCI-Ly7_Control_rep2 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123168 Sample Accession: GSM5571596 ID: 305571596 3533. SUDH4_OCABi_rep2 [ATAC-seq] Organism: Homo sapiens Source name: SUDH4 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123167 Sample Accession: GSM5571595 ID: 305571595 3534. OCI-Ly7_Control_rep1 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123166 Sample Accession: GSM5571594 ID: 305571594 3535. SUDH4_OCT2i_rep2 [ATAC-seq] Organism: Homo sapiens Source name: SUDH4 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123180 Sample Accession: GSM5571593 ID: 305571593 3536. SUDH4_OCABi_rep1 [ATAC-seq] Organism: Homo sapiens Source name: SUDH4 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123179 Sample Accession: GSM5571592 ID: 305571592 3537. OCI-Ly7_OCT2i_rep2 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly7 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123178 Sample Accession: GSM5571591 ID: 305571591 3538. SUDH4_OCT2i_rep1 [ATAC-seq] Organism: Homo sapiens Source name: SUDH4 Platform: GPL16791 Series: GSE183803 GSE183806 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5571nnn/GSM5571590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX12123177 Sample Accession: GSM5571590 ID: 305571590 3539. cKO_3 ATAC Organism: Mus musculus Source name: hindlimb muscles Platform: GPL21103 Series: GSE132220 GSE132256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5974658 Sample Accession: GSM3854231 ID: 303854231 3540. cKO_2 ATAC Organism: Mus musculus Source name: hindlimb muscles Platform: GPL21103 Series: GSE132220 GSE132256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5974657 Sample Accession: GSM3854230 ID: 303854230 3541. cKO_1 ATAC Organism: Mus musculus Source name: hindlimb muscles Platform: GPL21103 Series: GSE132220 GSE132256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854229/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5974656 Sample Accession: GSM3854229 ID: 303854229 3542. Ctrl_3 ATAC Organism: Mus musculus Source name: hindlimb muscles Platform: GPL21103 Series: GSE132220 GSE132256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854228/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5974655 Sample Accession: GSM3854228 ID: 303854228 3543. Ctrl_2 ATAC Organism: Mus musculus Source name: hindlimb muscles Platform: GPL21103 Series: GSE132220 GSE132256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854227/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5974654 Sample Accession: GSM3854227 ID: 303854227 3544. Ctrl_1 ATAC Organism: Mus musculus Source name: hindlimb muscles Platform: GPL21103 Series: GSE132220 GSE132256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854226/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5974653 Sample Accession: GSM3854226 ID: 303854226 3545. Tinaja_2 [ATAC-seq] Organism: Astyanax mexicanus Source name: Tinaja cave_liver Platform: GPL27684 Series: GSE153048 GSE153052 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8602233 Sample Accession: GSM4633549 ID: 304633549 3546. Tinaja_1 [ATAC-seq] Organism: Astyanax mexicanus Source name: Tinaja cave_liver Platform: GPL27684 Series: GSE153048 GSE153052 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4633nnn/GSM4633548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8602232 Sample Accession: GSM4633548 ID: 304633548 3547. Surface_2 [ATAC-seq] Organism: Astyanax mexicanus Source name: Surface_liver Platform: GPL27684 Series: GSE153048 GSE153052 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8602231 Sample Accession: GSM4633546 ID: 304633546 3548. Surface_1 [ATAC-seq] Organism: Astyanax mexicanus Source name: Surface_liver Platform: GPL27684 Series: GSE153048 GSE153052 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4633nnn/GSM4633544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8602230 Sample Accession: GSM4633544 ID: 304633544 3549. Pachon_2 [ATAC-seq] Organism: Astyanax mexicanus Source name: Pachon cave_liver Platform: GPL27684 Series: GSE153048 GSE153052 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8602229 Sample Accession: GSM4633542 ID: 304633542 3550. Pachon_1 [ATAC-seq] Organism: Astyanax mexicanus Source name: Pachon cave_liver Platform: GPL27684 Series: GSE153048 GSE153052 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4633nnn/GSM4633540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8602228 Sample Accession: GSM4633540 ID: 304633540 3551. M16: mouse stress monocyte ATAC-seq Organism: Mus musculus Source name: isolated bone marrow monocytes Platform: GPL17021 Series: GSE167536 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9910275 Sample Accession: GSM5106845 ID: 305106845 3552. M15: mouse stress monocyte ATAC-seq Organism: Mus musculus Source name: isolated bone marrow monocytes Platform: GPL17021 Series: GSE167536 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9910274 Sample Accession: GSM5106844 ID: 305106844 3553. M14: mouse stress monocyte ATAC-seq Organism: Mus musculus Source name: isolated bone marrow monocytes Platform: GPL17021 Series: GSE167536 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9910273 Sample Accession: GSM5106843 ID: 305106843 3554. M4: mouse control monocyte ATAC-seq Organism: Mus musculus Source name: isolated bone marrow monocytes Platform: GPL17021 Series: GSE167536 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9910272 Sample Accession: GSM5106842 ID: 305106842 3555. M3: mouse control monocyte ATAC-seq Organism: Mus musculus Source name: isolated bone marrow monocytes Platform: GPL17021 Series: GSE167536 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9910277 Sample Accession: GSM5106841 ID: 305106841 3556. M1: mouse control monocyte ATAC-seq Organism: Mus musculus Source name: isolated bone marrow monocytes Platform: GPL17021 Series: GSE167536 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9910276 Sample Accession: GSM5106840 ID: 305106840 3557. ATAC-Seq Person living with HIV sample 27, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969296 Sample Accession: GSM5048505 ID: 305048505 3558. ATAC-Seq Person living with HIV sample 27, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969295 Sample Accession: GSM5048504 ID: 305048504 3559. ATAC-Seq Person living with HIV sample 26, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969294 Sample Accession: GSM5048503 ID: 305048503 3560. ATAC-Seq Person living with HIV sample 26, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969293 Sample Accession: GSM5048502 ID: 305048502 3561. ATAC-Seq Person living with HIV sample 25, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969292 Sample Accession: GSM5048501 ID: 305048501 3562. ATAC-Seq Person living with HIV sample 25, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969291 Sample Accession: GSM5048500 ID: 305048500 3563. ATAC-Seq Person living with HIV sample 23, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969290 Sample Accession: GSM5048499 ID: 305048499 3564. ATAC-Seq Person living with HIV sample 23, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969289 Sample Accession: GSM5048498 ID: 305048498 3565. ATAC-Seq Person living with HIV sample 21, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969288 Sample Accession: GSM5048497 ID: 305048497 3566. ATAC-Seq Person living with HIV sample 21, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969287 Sample Accession: GSM5048496 ID: 305048496 3567. ATAC-Seq Person living with HIV sample 20, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969368 Sample Accession: GSM5048495 ID: 305048495 3568. ATAC-Seq Person living with HIV sample 20, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969367 Sample Accession: GSM5048494 ID: 305048494 3569. ATAC-Seq Person living with HIV sample 19, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969366 Sample Accession: GSM5048493 ID: 305048493 3570. ATAC-Seq Person living with HIV sample 19, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969365 Sample Accession: GSM5048492 ID: 305048492 3571. ATAC-Seq Person living with HIV sample 17, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969364 Sample Accession: GSM5048491 ID: 305048491 3572. ATAC-Seq Person living with HIV sample 17, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969363 Sample Accession: GSM5048490 ID: 305048490 3573. ATAC-Seq Person living with HIV sample 15, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969362 Sample Accession: GSM5048489 ID: 305048489 3574. ATAC-Seq Person living with HIV sample 15, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969361 Sample Accession: GSM5048488 ID: 305048488 3575. ATAC-Seq Person living with HIV sample 14, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969360 Sample Accession: GSM5048487 ID: 305048487 3576. ATAC-Seq Person living with HIV sample 14, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969359 Sample Accession: GSM5048486 ID: 305048486 3577. ATAC-Seq Person living with HIV sample 13, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969358 Sample Accession: GSM5048485 ID: 305048485 3578. ATAC-Seq Person living with HIV sample 13, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969357 Sample Accession: GSM5048484 ID: 305048484 3579. ATAC-Seq Person living with HIV sample 11, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969356 Sample Accession: GSM5048483 ID: 305048483 3580. ATAC-Seq Person living with HIV sample 11, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969355 Sample Accession: GSM5048482 ID: 305048482 3581. ATAC-Seq Person living with HIV sample 10, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969354 Sample Accession: GSM5048481 ID: 305048481 3582. ATAC-Seq Person living with HIV sample 10, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969353 Sample Accession: GSM5048480 ID: 305048480 3583. ATAC-Seq Person living with HIV sample 9, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969352 Sample Accession: GSM5048479 ID: 305048479 3584. ATAC-Seq Person living with HIV sample 9, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969351 Sample Accession: GSM5048478 ID: 305048478 3585. ATAC-Seq Person living with HIV sample 5, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969350 Sample Accession: GSM5048477 ID: 305048477 3586. ATAC-Seq Person living with HIV sample 5, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969349 Sample Accession: GSM5048476 ID: 305048476 3587. ATAC-Seq Person living with HIV sample 4, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969348 Sample Accession: GSM5048475 ID: 305048475 3588. ATAC-Seq Person living with HIV sample 4, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969347 Sample Accession: GSM5048474 ID: 305048474 3589. ATAC-Seq Person living with HIV sample 3, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969346 Sample Accession: GSM5048473 ID: 305048473 3590. ATAC-Seq Person living with HIV sample 3, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969345 Sample Accession: GSM5048472 ID: 305048472 3591. ATAC-Seq Pre-exposure prophylaxis sample 37, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969344 Sample Accession: GSM5048471 ID: 305048471 3592. ATAC-Seq Pre-exposure prophylaxis sample 37, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969343 Sample Accession: GSM5048470 ID: 305048470 3593. ATAC-Seq Pre-exposure prophylaxis sample 36, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969342 Sample Accession: GSM5048469 ID: 305048469 3594. ATAC-Seq Pre-exposure prophylaxis sample 36, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969341 Sample Accession: GSM5048468 ID: 305048468 3595. ATAC-Seq Pre-exposure prophylaxis sample 35, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969340 Sample Accession: GSM5048467 ID: 305048467 3596. ATAC-Seq Pre-exposure prophylaxis sample 35, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969339 Sample Accession: GSM5048466 ID: 305048466 3597. ATAC-Seq Pre-exposure prophylaxis sample 34, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969338 Sample Accession: GSM5048465 ID: 305048465 3598. ATAC-Seq Pre-exposure prophylaxis sample 34, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969337 Sample Accession: GSM5048464 ID: 305048464 3599. ATAC-Seq Pre-exposure prophylaxis sample 33, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969336 Sample Accession: GSM5048463 ID: 305048463 3600. ATAC-Seq Pre-exposure prophylaxis sample 33, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969335 Sample Accession: GSM5048462 ID: 305048462 3601. ATAC-Seq Pre-exposure prophylaxis sample 32, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969334 Sample Accession: GSM5048461 ID: 305048461 3602. ATAC-Seq Pre-exposure prophylaxis sample 32, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969333 Sample Accession: GSM5048460 ID: 305048460 3603. ATAC-Seq Pre-exposure prophylaxis sample 31, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969332 Sample Accession: GSM5048459 ID: 305048459 3604. ATAC-Seq Pre-exposure prophylaxis sample 31, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969331 Sample Accession: GSM5048458 ID: 305048458 3605. ATAC-Seq Pre-exposure prophylaxis sample 29, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969330 Sample Accession: GSM5048457 ID: 305048457 3606. ATAC-Seq Pre-exposure prophylaxis sample 29, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969329 Sample Accession: GSM5048456 ID: 305048456 3607. ATAC-Seq Pre-exposure prophylaxis sample 28, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969328 Sample Accession: GSM5048455 ID: 305048455 3608. ATAC-Seq Pre-exposure prophylaxis sample 28, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969327 Sample Accession: GSM5048454 ID: 305048454 3609. ATAC-Seq Pre-exposure prophylaxis sample 27, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969326 Sample Accession: GSM5048453 ID: 305048453 3610. ATAC-Seq Pre-exposure prophylaxis sample 27, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969325 Sample Accession: GSM5048452 ID: 305048452 3611. ATAC-Seq Healthy control sample 22, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969324 Sample Accession: GSM5048451 ID: 305048451 3612. ATAC-Seq Healthy control sample 22, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969323 Sample Accession: GSM5048450 ID: 305048450 3613. ATAC-Seq Healthy control sample 21, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969322 Sample Accession: GSM5048449 ID: 305048449 3614. ATAC-Seq Healthy control sample 21, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969321 Sample Accession: GSM5048448 ID: 305048448 3615. ATAC-Seq Healthy control sample 19, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969320 Sample Accession: GSM5048447 ID: 305048447 3616. ATAC-Seq Healthy control sample 19, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969319 Sample Accession: GSM5048446 ID: 305048446 3617. ATAC-Seq Healthy control sample 18, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969318 Sample Accession: GSM5048445 ID: 305048445 3618. ATAC-Seq Healthy control sample 18, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969317 Sample Accession: GSM5048444 ID: 305048444 3619. ATAC-Seq Healthy control sample 16, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969316 Sample Accession: GSM5048443 ID: 305048443 3620. ATAC-Seq Healthy control sample 16, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969315 Sample Accession: GSM5048442 ID: 305048442 3621. ATAC-Seq Healthy control sample 15, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969314 Sample Accession: GSM5048441 ID: 305048441 3622. ATAC-Seq Healthy control sample 15, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969313 Sample Accession: GSM5048440 ID: 305048440 3623. ATAC-Seq Healthy control sample 14, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969312 Sample Accession: GSM5048439 ID: 305048439 3624. ATAC-Seq Healthy control sample 14, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969311 Sample Accession: GSM5048438 ID: 305048438 3625. ATAC-Seq Healthy control sample 13, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969310 Sample Accession: GSM5048437 ID: 305048437 3626. ATAC-Seq Healthy control sample 13, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969309 Sample Accession: GSM5048436 ID: 305048436 3627. ATAC-Seq Healthy control sample 12, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969308 Sample Accession: GSM5048435 ID: 305048435 3628. ATAC-Seq Healthy control sample 12, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969307 Sample Accession: GSM5048434 ID: 305048434 3629. ATAC-Seq Healthy control sample 11, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969306 Sample Accession: GSM5048433 ID: 305048433 3630. ATAC-Seq Healthy control sample 11, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969305 Sample Accession: GSM5048432 ID: 305048432 3631. ATAC-Seq Healthy control sample 10, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969304 Sample Accession: GSM5048431 ID: 305048431 3632. ATAC-Seq Healthy control sample 10, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969303 Sample Accession: GSM5048430 ID: 305048430 3633. ATAC-Seq Healthy control sample 9, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969302 Sample Accession: GSM5048429 ID: 305048429 3634. ATAC-Seq Healthy control sample 9, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969301 Sample Accession: GSM5048428 ID: 305048428 3635. ATAC-Seq Healthy control sample 7, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969300 Sample Accession: GSM5048427 ID: 305048427 3636. ATAC-Seq Healthy control sample 7, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969299 Sample Accession: GSM5048426 ID: 305048426 3637. ATAC-Seq Healthy control sample 2, Alveolar macrophage, Mycobacterium tuberculosis challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969298 Sample Accession: GSM5048425 ID: 305048425 3638. ATAC-Seq Healthy control sample 2, Alveolar macrophage, Mycobacterium tuberculosis non-challenged library Organism: Homo sapiens Source name: bronchoalveolar lavage Platform: GPL20301 Series: GSE165703 GSE165709 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9969297 Sample Accession: GSM5048424 ID: 305048424 3639. Purkinje cell p56 ATAC-Seq WT rep2 Organism: Mus musculus Source name: Cerebellum Platform: GPL19057 Series: GSE166423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10056895 Sample Accession: GSM5070946 ID: 305070946 3640. Purkinje cell p56 ATAC-Seq WT rep1 Organism: Mus musculus Source name: Cerebellum Platform: GPL19057 Series: GSE166423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10056894 Sample Accession: GSM5070945 ID: 305070945 3641. Purkinje cell p7 ATAC-Seq WT rep2 Organism: Mus musculus Source name: Cerebellum Platform: GPL19057 Series: GSE166423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10056893 Sample Accession: GSM5070944 ID: 305070944 3642. Purkinje cell p7 ATAC-Seq WT rep1 Organism: Mus musculus Source name: Cerebellum Platform: GPL19057 Series: GSE166423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10056892 Sample Accession: GSM5070943 ID: 305070943 3643. Purkinje cell p0 ATAC-Seq WT rep2 Organism: Mus musculus Source name: Cerebellum Platform: GPL19057 Series: GSE166423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10056891 Sample Accession: GSM5070942 ID: 305070942 3644. Purkinje cell p0 ATAC-Seq WT rep1 Organism: Mus musculus Source name: Cerebellum Platform: GPL19057 Series: GSE166423 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10056890 Sample Accession: GSM5070941 ID: 305070941 3645. ATAC-seq_Melanoma_p68_WT_73-2_1 Organism: Mus musculus Source name: Melanoma cell line Platform: GPL21103 Series: GSE119540 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3376nnn/GSM3376460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4644746 Sample Accession: GSM3376460 ID: 303376460 3646. ATAC-seq_Melanoma_p68_WT_73-1_1 Organism: Mus musculus Source name: Melanoma cell line Platform: GPL21103 Series: GSE119540 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3376nnn/GSM3376459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4644745 Sample Accession: GSM3376459 ID: 303376459 3647. ATAC-seq_Melanoma_p14_WT_119-2_1 Organism: Mus musculus Source name: Melanoma cell line Platform: GPL21103 Series: GSE119540 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3376nnn/GSM3376458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4644744 Sample Accession: GSM3376458 ID: 303376458 3648. ATAC-seq_Melanoma_p14_WT_119-1_1 Organism: Mus musculus Source name: Melanoma cell line Platform: GPL21103 Series: GSE119540 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3376nnn/GSM3376457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4644743 Sample Accession: GSM3376457 ID: 303376457 3649. ATAC-seq_Melanoma_p44_STAT3_KO_113-2_1 Organism: Mus musculus Source name: Melanoma cell line Platform: GPL21103 Series: GSE119540 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3376nnn/GSM3376456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4644742 Sample Accession: GSM3376456 ID: 303376456 3650. ATAC-seq_Melanoma_p44_STAT3_KO_113-1_1 Organism: Mus musculus Source name: Melanoma cell line Platform: GPL21103 Series: GSE119540 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3376nnn/GSM3376455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4644741 Sample Accession: GSM3376455 ID: 303376455 3651. ATAC-seq_Melanoma_p18_STAT3_KO_112-2_1 Organism: Mus musculus Source name: Melanoma cell line Platform: GPL21103 Series: GSE119540 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3376nnn/GSM3376454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4644740 Sample Accession: GSM3376454 ID: 303376454 3652. ATAC-seq_Melanoma_p18_STAT3_KO_112-1_1 Organism: Mus musculus Source name: Melanoma cell line Platform: GPL21103 Series: GSE119540 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3376nnn/GSM3376453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4644739 Sample Accession: GSM3376453 ID: 303376453 3653. ATAC-Seq MGT_siAJSZ_2 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL24676 Series: GSE183121 GSE183124 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5551nnn/GSM5551479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11975678 Sample Accession: GSM5551479 ID: 305551479 3654. ATAC-Seq MGT_siAJSZ_1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL24676 Series: GSE183121 GSE183124 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5551nnn/GSM5551478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11975677 Sample Accession: GSM5551478 ID: 305551478 3655. ATAC-Seq HDF_2 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL24676 Series: GSE183121 GSE183124 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5551nnn/GSM5551477/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11975676 Sample Accession: GSM5551477 ID: 305551477 3656. ATAC-Seq HDF_1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL24676 Series: GSE183121 GSE183124 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5551nnn/GSM5551476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11975675 Sample Accession: GSM5551476 ID: 305551476 3657. ATAC-Seq MGT_2 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL24676 Series: GSE183121 GSE183124 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5551nnn/GSM5551475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11975674 Sample Accession: GSM5551475 ID: 305551475 3658. ATAC-Seq MGT_1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL24676 Series: GSE183121 GSE183124 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5551nnn/GSM5551474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11975673 Sample Accession: GSM5551474 ID: 305551474 3659. ATAC-seq_C Stage 5 EOMES Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058335 Sample Accession: GSM5071178 ID: 305071178 3660. ATAC-seq_C Stage 5 T-BET Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058334 Sample Accession: GSM5071177 ID: 305071177 3661. ATAC-seq_C Stage 5 Ctrl Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058333 Sample Accession: GSM5071176 ID: 305071176 3662. ATAC-seq_B Stage 5 EOMES Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058332 Sample Accession: GSM5071175 ID: 305071175 3663. ATAC-seq_B Stage 5 T-BET Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058331 Sample Accession: GSM5071174 ID: 305071174 3664. ATAC-seq_B Stage 5 Ctrl Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058330 Sample Accession: GSM5071173 ID: 305071173 3665. ATAC-seq_C Stage 4 Ctrl Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058329 Sample Accession: GSM5071172 ID: 305071172 3666. ATAC-seq_C Stage 4 T-BET Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058328 Sample Accession: GSM5071171 ID: 305071171 3667. ATAC-seq_C Stage 4 EOMES Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058327 Sample Accession: GSM5071170 ID: 305071170 3668. ATAC-seq_B Stage 4 EOMES Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058326 Sample Accession: GSM5071169 ID: 305071169 3669. ATAC-seq_B Stage 4 T-BET Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058325 Sample Accession: GSM5071168 ID: 305071168 3670. ATAC-seq_B Stage 4 Ctrl Organism: Homo sapiens Source name: Natural Killer cells Platform: GPL18573 Series: GSE166436 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058324 Sample Accession: GSM5071167 ID: 305071167 3671. ATAC-seq_D EOMES Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058314 Sample Accession: GSM5071166 ID: 305071166 3672. ATAC-seq_D T-BET Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058313 Sample Accession: GSM5071165 ID: 305071165 3673. ATAC-seq_D Ctrl Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058312 Sample Accession: GSM5071164 ID: 305071164 3674. ATAC-seq_C EOMES Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058311 Sample Accession: GSM5071163 ID: 305071163 3675. ATAC-seq_C T-BET Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058310 Sample Accession: GSM5071162 ID: 305071162 3676. ATAC-seq_C Ctrl Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058309 Sample Accession: GSM5071161 ID: 305071161 3677. ATAC-seq_B EOMES Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058308 Sample Accession: GSM5071160 ID: 305071160 3678. ATAC-seq_B T-BET Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058307 Sample Accession: GSM5071159 ID: 305071159 3679. ATAC-seq_B Ctrl Organism: Homo sapiens Source name: Hematopoietic progenitor cells Platform: GPL18573 Series: GSE166435 GSE166439 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058306 Sample Accession: GSM5071158 ID: 305071158 3680. Old BM derived macrophages 3 (ATAC-Seq) Organism: Mus musculus Source name: Bone marrow Platform: GPL13112 Series: GSE182172 GSE182174 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5519nnn/GSM5519801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11765755 Sample Accession: GSM5519801 ID: 305519801 3681. Old BM derived macrophages 2 (ATAC-Seq) Organism: Mus musculus Source name: Bone marrow Platform: GPL13112 Series: GSE182172 GSE182174 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5519nnn/GSM5519800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11765754 Sample Accession: GSM5519800 ID: 305519800 3682. Old BM derived macrophages 1 (ATAC-Seq) Organism: Mus musculus Source name: Bone marrow Platform: GPL13112 Series: GSE182172 GSE182174 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5519nnn/GSM5519799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11765753 Sample Accession: GSM5519799 ID: 305519799 3683. Young BM derived macrophages 3 (ATAC-Seq) Organism: Mus musculus Source name: Bone marrow Platform: GPL13112 Series: GSE182172 GSE182174 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5519nnn/GSM5519798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11765752 Sample Accession: GSM5519798 ID: 305519798 3684. Young BM derived macrophages 2 (ATAC-Seq) Organism: Mus musculus Source name: Bone marrow Platform: GPL13112 Series: GSE182172 GSE182174 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5519nnn/GSM5519797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11765751 Sample Accession: GSM5519797 ID: 305519797 3685. Young BM derived macrophages 1 (ATAC-Seq) Organism: Mus musculus Source name: Bone marrow Platform: GPL13112 Series: GSE182172 GSE182174 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5519nnn/GSM5519796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11765750 Sample Accession: GSM5519796 ID: 305519796 3686. MEF10_MN+FRG_Day6_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF10_MN+FRG_Day6 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430899 Sample Accession: GSM5207037 ID: 305207037 3687. MEF10_MN+FRG_Day6_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF10_MN+FRG_Day6 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430898 Sample Accession: GSM5207036 ID: 305207036 3688. MEF10_MyoD+FRG_Day6_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF10_MyoD+FRG_Day6 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430897 Sample Accession: GSM5207035 ID: 305207035 3689. MEF10_MyoD+FRG_Day6_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF10_MyoD+FRG_Day6 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430896 Sample Accession: GSM5207034 ID: 305207034 3690. MEF14_FRG_Day8_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_FRG_Day8 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430895 Sample Accession: GSM5207033 ID: 305207033 3691. MEF14_FRG_Day8_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_FRG_Day8 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430894 Sample Accession: GSM5207032 ID: 305207032 3692. MEF14_Dox+_Day8_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+_Day8 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430893 Sample Accession: GSM5207031 ID: 305207031 3693. MEF14_Dox+_Day8_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+_Day8 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430892 Sample Accession: GSM5207030 ID: 305207030 3694. MEF14_Dox+_Day4_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+_Day4 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430891 Sample Accession: GSM5207029 ID: 305207029 3695. MEF14_Dox+_Day4_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+_Day4 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430890 Sample Accession: GSM5207028 ID: 305207028 3696. activated_SCs_rep2 [ATAC-seq] Organism: Mus musculus Source name: activated_SCs Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430889 Sample Accession: GSM5207027 ID: 305207027 3697. activated_SCs_rep1 [ATAC-seq] Organism: Mus musculus Source name: activated_SCs Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430888 Sample Accession: GSM5207026 ID: 305207026 3698. quiescent_SCs_rep2 [ATAC-seq] Organism: Mus musculus Source name: quiescent_SCs Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430887 Sample Accession: GSM5207025 ID: 305207025 3699. quiescent_SCs_rep1 [ATAC-seq] Organism: Mus musculus Source name: quiescent_SCs Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430886 Sample Accession: GSM5207024 ID: 305207024 3700. MEF14_Dox+FRG_Day10_GFP_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day10_GFP Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430885 Sample Accession: GSM5207023 ID: 305207023 3701. MEF14_Dox+FRG_Day10_GFP_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day10_GFP Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430884 Sample Accession: GSM5207022 ID: 305207022 3702. MEF14_Dox+FRG_Day8_GFP_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day8_GFP Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430883 Sample Accession: GSM5207021 ID: 305207021 3703. MEF14_Dox+FRG_Day8_GFP_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day8_GFP Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430882 Sample Accession: GSM5207020 ID: 305207020 3704. MEF14_Dox+FRG_Day8_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day8 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430881 Sample Accession: GSM5207019 ID: 305207019 3705. MEF14_Dox+FRG_Day8_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day8 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430880 Sample Accession: GSM5207018 ID: 305207018 3706. MEF14_Dox+FRG_Day6_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day6 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430879 Sample Accession: GSM5207017 ID: 305207017 3707. MEF14_Dox+FRG_Day6_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day6 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430878 Sample Accession: GSM5207016 ID: 305207016 3708. MEF14_Dox+FRG_Day4_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day4 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430877 Sample Accession: GSM5207015 ID: 305207015 3709. MEF14_Dox+FRG_Day4_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day4 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430876 Sample Accession: GSM5207014 ID: 305207014 3710. MEF14_Dox+FRG_Day2_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day2 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430875 Sample Accession: GSM5207013 ID: 305207013 3711. MEF14_Dox+FRG_Day2_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Dox+FRG_Day2 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430874 Sample Accession: GSM5207012 ID: 305207012 3712. MEF14_Day0_rep2 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Day0 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430873 Sample Accession: GSM5207011 ID: 305207011 3713. MEF14_Day0_rep1 [ATAC-seq] Organism: Mus musculus Source name: MEF14_Day0 Platform: GPL13112 Series: GSE169488 GSE169489 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5207nnn/GSM5207010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10430872 Sample Accession: GSM5207010 ID: 305207010 3714. ATAC-seq Luminal terminal endbuds replicate 3 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895750 Sample Accession: GSM5026131 ID: 305026131 3715. ATAC-seq Luminal terminal endbuds replicate 2 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895749 Sample Accession: GSM5026130 ID: 305026130 3716. ATAC-seq Luminal terminal endbuds replicate 1 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895748 Sample Accession: GSM5026129 ID: 305026129 3717. ATAC-seq Luminal ducts replicate 3 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895747 Sample Accession: GSM5026128 ID: 305026128 3718. ATAC-seq Luminal ducts replicate 2 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026127/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895746 Sample Accession: GSM5026127 ID: 305026127 3719. ATAC-seq Luminal ducts replicate 1 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895745 Sample Accession: GSM5026126 ID: 305026126 3720. ATAC-seq Basal terminal endbuds replicate 3 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895744 Sample Accession: GSM5026125 ID: 305026125 3721. ATAC-seq Basal terminal endbuds replicate 2 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895743 Sample Accession: GSM5026124 ID: 305026124 3722. ATAC-seq Basal terminal endbuds replicate 1 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895742 Sample Accession: GSM5026123 ID: 305026123 3723. ATAC-seq Basal ducts replicate 3 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895741 Sample Accession: GSM5026122 ID: 305026122 3724. ATAC-seq Basal ducts replicate 1 Organism: Mus musculus Source name: Mammary gland Platform: GPL19057 Series: GSE165096 GSE165099 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5026nnn/GSM5026121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9895740 Sample Accession: GSM5026121 ID: 305026121 3725. ATAC-seq_T2 Organism: Homo sapiens Source name: pituitary tumors Platform: GPL20795 Series: GSE182180 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5520nnn/GSM5520149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11766141 Sample Accession: GSM5520149 ID: 305520149 3726. ATAC-seq_T1 Organism: Homo sapiens Source name: pituitary tumors Platform: GPL20795 Series: GSE182180 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5520nnn/GSM5520148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11766140 Sample Accession: GSM5520148 ID: 305520148 3727. ATAC-seq_N2 Organism: Homo sapiens Source name: normal pituitary tissues  Platform: GPL20795 Series: GSE182180 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5520nnn/GSM5520147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11766139 Sample Accession: GSM5520147 ID: 305520147 3728. ATAC-seq_N1 Organism: Homo sapiens Source name: normal pituitary tissues  Platform: GPL20795 Series: GSE182180 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5520nnn/GSM5520146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11766138 Sample Accession: GSM5520146 ID: 305520146 3729. Capan-1 ATAC-seq Rep2 Organism: Homo sapiens Source name: Liver metastasis of pancreatic cancer Platform: GPL20795 Series: GSE149103 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4490nnn/GSM4490537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8135317 Sample Accession: GSM4490537 ID: 304490537 3730. Capan-1 ATAC-seq Rep1 Organism: Homo sapiens Source name: Liver metastasis of pancreatic cancer Platform: GPL20795 Series: GSE149103 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4490nnn/GSM4490536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8135316 Sample Accession: GSM4490536 ID: 304490536 3731. PANC-1 ATAC-seq Rep2 Organism: Homo sapiens Source name: Primary pancreatic cancer Platform: GPL20795 Series: GSE149103 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4490nnn/GSM4490515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8135293 Sample Accession: GSM4490515 ID: 304490515 3732. PANC-1 ATAC-seq Rep1 Organism: Homo sapiens Source name: Primary pancreatic cancer Platform: GPL20795 Series: GSE149103 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4490nnn/GSM4490514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8135292 Sample Accession: GSM4490514 ID: 304490514 3733. HPNE ATAC-seq Rep2 Organism: Homo sapiens Source name: Immortalized normal pancreatic ductal epithelium Platform: GPL20795 Series: GSE149103 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4490nnn/GSM4490493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8135318 Sample Accession: GSM4490493 ID: 304490493 3734. HPNE ATAC-seq Rep1 Organism: Homo sapiens Source name: Immortalized normal pancreatic ductal epithelium Platform: GPL20795 Series: GSE149103 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4490nnn/GSM4490492/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8135307 Sample Accession: GSM4490492 ID: 304490492 3735. ATAC_SST_UF_SAL_rep3 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644976 Sample Accession: GSM5502204 ID: 305502204 3736. ATAC_SST_UF_SAL_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644975 Sample Accession: GSM5502203 ID: 305502203 3737. ATAC_SST_UF_SAL_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644974 Sample Accession: GSM5502202 ID: 305502202 3738. ATAC_SST_IP_SAL_rep3 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644973 Sample Accession: GSM5502201 ID: 305502201 3739. ATAC_SST_IP_SAL_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502200/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644972 Sample Accession: GSM5502200 ID: 305502200 3740. ATAC_SST_IP_SAL_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502199/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644971 Sample Accession: GSM5502199 ID: 305502199 3741. 60minATAC_PV_UF_SAL_rep5 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644970 Sample Accession: GSM5502198 ID: 305502198 3742. 60minATAC_PV_UF_SAL_rep4 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644969 Sample Accession: GSM5502197 ID: 305502197 3743. 60minATAC_PV_UF_SAL_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644968 Sample Accession: GSM5502196 ID: 305502196 3744. 60minATAC_PV_UF_SAL_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644967 Sample Accession: GSM5502195 ID: 305502195 3745. 60minATAC_PV_UF_AMPH_rep4 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644966 Sample Accession: GSM5502194 ID: 305502194 3746. 60minATAC_PV_UF_AMPH_rep3 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644965 Sample Accession: GSM5502193 ID: 305502193 3747. 60minATAC_PV_UF_AMPH_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644964 Sample Accession: GSM5502192 ID: 305502192 3748. 60minATAC_PV_UF_AMPH_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644963 Sample Accession: GSM5502191 ID: 305502191 3749. 60minATAC_PV_IP_SAL_rep5 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644962 Sample Accession: GSM5502190 ID: 305502190 3750. 60minATAC_PV_IP_SAL_rep4 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644961 Sample Accession: GSM5502189 ID: 305502189 3751. 60minATAC_PV_IP_SAL_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644960 Sample Accession: GSM5502188 ID: 305502188 3752. 60minATAC_PV_IP_SAL_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644959 Sample Accession: GSM5502187 ID: 305502187 3753. 60minATAC_PV_IP_AMPH_rep4 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644958 Sample Accession: GSM5502186 ID: 305502186 3754. 60minATAC_PV_IP_AMPH_rep3 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644957 Sample Accession: GSM5502185 ID: 305502185 3755. 60minATAC_PV_IP_AMPH_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644956 Sample Accession: GSM5502184 ID: 305502184 3756. 60minATAC_PV_IP_AMPH_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL21103 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644955 Sample Accession: GSM5502183 ID: 305502183 3757. 24hrPostSensATAC_PV_IP_AMPH_Iso2_rep3 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644991 Sample Accession: GSM5502219 ID: 305502219 3758. 24hrPostSensATAC_PV_UF_SAL_Iso2_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644990 Sample Accession: GSM5502218 ID: 305502218 3759. 24hrPostSensATAC_PV_IP_SAL_Iso2_rep3 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644989 Sample Accession: GSM5502217 ID: 305502217 3760. 24hrPostSensATAC_PV_UF_SAL_Iso2_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644988 Sample Accession: GSM5502216 ID: 305502216 3761. 24hrPostSensATAC_PV_IP_SAL_Iso2_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644987 Sample Accession: GSM5502215 ID: 305502215 3762. 24hrPostSensATAC_PV_IP_AMPH_Iso2_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644986 Sample Accession: GSM5502214 ID: 305502214 3763. 24hrPostSensATAC_PV_IP_SAL_Iso2_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644985 Sample Accession: GSM5502213 ID: 305502213 3764. 24hrPostSensATAC_PV_UF_AMPH_Iso2_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644984 Sample Accession: GSM5502212 ID: 305502212 3765. 24hrPostSensATAC_PV_IP_AMPH_Iso2_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644983 Sample Accession: GSM5502211 ID: 305502211 3766. 24hrPostSensATAC_PV_UF_SAL_Iso1_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644982 Sample Accession: GSM5502210 ID: 305502210 3767. 24hrPostSensATAC_PV_UF_AMPH_Iso1_rep3 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644981 Sample Accession: GSM5502209 ID: 305502209 3768. 24hrPostSensATAC_PV_IP_AMPH_Iso1_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644980 Sample Accession: GSM5502208 ID: 305502208 3769. 24hrPostSensATAC_PV_UF_SAL_Iso1_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502207/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644979 Sample Accession: GSM5502207 ID: 305502207 3770. 24hrPostSensATAC_PV_UF_AMPH_Iso1_rep2 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644978 Sample Accession: GSM5502206 ID: 305502206 3771. 24hrPostSensATAC_PV_UF_AMPH_Iso1_rep1 Organism: Mus musculus Source name: Fresh Dissected Nucleus Accumbens Platform: GPL24247 Series: GSE181420 GSE181421 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5502nnn/GSM5502205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11644977 Sample Accession: GSM5502205 ID: 305502205 3772. ATAC-seq Supt7l KO rep 4 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039352 Sample Accession: GSM5350983 ID: 305350983 3773. ATAC-seq Supt7l KO rep 3 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039351 Sample Accession: GSM5350982 ID: 305350982 3774. ATAC-seq AID-Yeats2 rep 4 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039350 Sample Accession: GSM5350981 ID: 305350981 3775. ATAC-seq AID-Yeats2 rep 3 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039349 Sample Accession: GSM5350980 ID: 305350980 3776. ATAC-seq AID-Zzz3 rep 4 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039348 Sample Accession: GSM5350979 ID: 305350979 3777. ATAC-seq AID-Zzz3 rep 3 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039347 Sample Accession: GSM5350978 ID: 305350978 3778. ATAC-seq WT rep 4 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039346 Sample Accession: GSM5350977 ID: 305350977 3779. ATAC-seq WT rep 3 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039344 Sample Accession: GSM5350976 ID: 305350976 3780. ATAC-seq Supt7l KO rep 2 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039343 Sample Accession: GSM5350975 ID: 305350975 3781. ATAC-seq Supt7l KO rep 1 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039342 Sample Accession: GSM5350974 ID: 305350974 3782. ATAC-seq AID-Yeats2 rep 2 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039341 Sample Accession: GSM5350973 ID: 305350973 3783. ATAC-seq AID-Yeats2 rep 1 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039340 Sample Accession: GSM5350972 ID: 305350972 3784. ATAC-seq AID-Zzz3 rep 2 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039339 Sample Accession: GSM5350971 ID: 305350971 3785. ATAC-seq AID-Zzz3 rep 1 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039338 Sample Accession: GSM5350970 ID: 305350970 3786. ATAC-seq WT rep 2 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039337 Sample Accession: GSM5350969 ID: 305350969 3787. ATAC-seq WT rep 1 Organism: Mus musculus Source name: mouse ES E14 cells Platform: GPL21103 Series: GSE175902 GSE175905 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11039345 Sample Accession: GSM5350968 ID: 305350968 3788. HSC CD93- rep2 [ATAC-Seq] Organism: Mus musculus Source name: Bone Marrow Platform: GPL24247 Series: GSE166476 GSE166477 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10060712 Sample Accession: GSM5071701 ID: 305071701 3789. HSC CD93- rep1 [ATAC-Seq] Organism: Mus musculus Source name: Bone Marrow Platform: GPL24247 Series: GSE166476 GSE166477 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10060711 Sample Accession: GSM5071700 ID: 305071700 3790. HSC CD93+ rep2 [ATAC-Seq] Organism: Mus musculus Source name: Bone Marrow Platform: GPL24247 Series: GSE166476 GSE166477 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071699/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10060710 Sample Accession: GSM5071699 ID: 305071699 3791. HSC CD93+ rep1 [ATAC-Seq] Organism: Mus musculus Source name: Bone Marrow Platform: GPL24247 Series: GSE166476 GSE166477 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10060709 Sample Accession: GSM5071698 ID: 305071698 3792. ATAC-seq in zebrafish wild-type embryos at 48hpf, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931603 Sample Accession: GSM4724550 ID: 304724550 3793. ATAC-seq in zebrafish wild-type embryos at 48hpf, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931602 Sample Accession: GSM4724549 ID: 304724549 3794. ATAC-seq in zebrafish wild-type embryos at 48hpf, injected with morpholino against tp53, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931601 Sample Accession: GSM4724548 ID: 304724548 3795. ATAC-seq in zebrafish wild-type embryos at 48hpf, injected with morpholino against tp53, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931600 Sample Accession: GSM4724547 ID: 304724547 3796. ATAC-seq in zebrafish ctcf mutant embryos at 48hpf, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931599 Sample Accession: GSM4724546 ID: 304724546 3797. ATAC-seq in zebrafish ctcf mutant embryos at 48hpf, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931598 Sample Accession: GSM4724545 ID: 304724545 3798. ATAC-seq in zebrafish ctcf mutant embryos at 48hpf, injected with morpholino against tp53, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931597 Sample Accession: GSM4724544 ID: 304724544 3799. ATAC-seq in zebrafish ctcf mutant embryos at 48hpf, injected with morpholino against tp53, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931596 Sample Accession: GSM4724543 ID: 304724543 3800. ATAC-seq in zebrafish wild-type embryos at 24hpf, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931595 Sample Accession: GSM4724542 ID: 304724542 3801. ATAC-seq in zebrafish wild-type embryos at 24hpf, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931594 Sample Accession: GSM4724541 ID: 304724541 3802. ATAC-seq in zebrafish ctcf mutant embryos at 24hpf, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931593 Sample Accession: GSM4724540 ID: 304724540 3803. ATAC-seq in zebrafish ctcf mutant embryos at 24hpf, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE156095 GSE156099 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4724nnn/GSM4724539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8931592 Sample Accession: GSM4724539 ID: 304724539 3804. ATAC-Seq (RNaseA + 800μg/ml)_Rep2 Organism: Drosophila melanogaster Source name: S2 Platform: GPL16479 Series: GSE85764 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2283nnn/GSM2283723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2031173 Sample Accession: GSM2283723 ID: 302283723 3805. ATAC-Seq (RNaseA + 400μg/ml)_Rep2 Organism: Drosophila melanogaster Source name: S2 Platform: GPL16479 Series: GSE85764 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2283nnn/GSM2283722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2031172 Sample Accession: GSM2283722 ID: 302283722 3806. ATAC-Seq (RNaseA + 200μg/ml)_Rep2 Organism: Drosophila melanogaster Source name: S2 Platform: GPL16479 Series: GSE85764 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2283nnn/GSM2283721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2031171 Sample Accession: GSM2283721 ID: 302283721 3807. ATAC-Seq (RNaseA - control)_Rep2 Organism: Drosophila melanogaster Source name: S2 Platform: GPL16479 Series: GSE85764 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2283nnn/GSM2283720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2031170 Sample Accession: GSM2283720 ID: 302283720 3808. ATAC-Seq (RNaseA + 800μg/ml)_Rep1 Organism: Drosophila melanogaster Source name: S2 Platform: GPL16479 Series: GSE85764 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2283nnn/GSM2283719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2031169 Sample Accession: GSM2283719 ID: 302283719 3809. ATAC-Seq (RNaseA + 400μg/ml)_Rep1 Organism: Drosophila melanogaster Source name: S2 Platform: GPL16479 Series: GSE85764 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2283nnn/GSM2283718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2031168 Sample Accession: GSM2283718 ID: 302283718 3810. ATAC-Seq (RNaseA + 200μg/ml)_Rep1 Organism: Drosophila melanogaster Source name: S2 Platform: GPL16479 Series: GSE85764 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2283nnn/GSM2283717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2031167 Sample Accession: GSM2283717 ID: 302283717 3811. ATAC-Seq (RNaseA - control)_Rep1 Organism: Drosophila melanogaster Source name: S2 Platform: GPL16479 Series: GSE85764 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2283nnn/GSM2283716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2031166 Sample Accession: GSM2283716 ID: 302283716 3812. ATAC-seq forelimb bud E11.5 replicate 2 [re-analysis] Organism: Mus musculus Source name: forelimb buds Platform: GPL19057 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843121 Sample Accession: GSM5017896 ID: 305017896 3813. ATAC-seq forelimb bud E11.5 replicate 1 [re-analysis] Organism: Mus musculus Source name: forelimb buds Platform: GPL19057 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843120 Sample Accession: GSM5017895 ID: 305017895 3814. ATAC-seq forelimb bud E10.5 replicate 2 [re-analysis] Organism: Mus musculus Source name: forelimb buds Platform: GPL19057 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843119 Sample Accession: GSM5017894 ID: 305017894 3815. ATAC-seq forelimb bud E10.5 replicate 1 [re-analysis] Organism: Mus musculus Source name: forelimb buds Platform: GPL19057 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843118 Sample Accession: GSM5017893 ID: 305017893 3816. ATAC-seq forelimb bud E9.75 replicate 2 Organism: Mus musculus Source name: forelimb buds Platform: GPL19057 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843117 Sample Accession: GSM5017892 ID: 305017892 3817. ATAC-seq forelimb bud E9.75 replicate 1 Organism: Mus musculus Source name: forelimb buds Platform: GPL19057 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843116 Sample Accession: GSM5017891 ID: 305017891 3818. LT_HSC_TFEB_3 [ATAC-Seq] Organism: Homo sapiens Source name: Cord blood Platform: GPL16791 Series: GSE153910 GSE153917 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4658nnn/GSM4658372/ Sample Accession: GSM4658372 ID: 304658372 3819. LT_HSC_TFEB_2 [ATAC-Seq] Organism: Homo sapiens Source name: Cord blood Platform: GPL16791 Series: GSE153910 GSE153917 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4658nnn/GSM4658371/ Sample Accession: GSM4658371 ID: 304658371 3820. LT_HSC_TFEB_1 [ATAC-Seq] Organism: Homo sapiens Source name: Cord blood Platform: GPL16791 Series: GSE153910 GSE153917 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4658nnn/GSM4658370/ Sample Accession: GSM4658370 ID: 304658370 3821. LT_HSC_GP91_3 [ATAC-Seq] Organism: Homo sapiens Source name: Cord blood Platform: GPL16791 Series: GSE153910 GSE153917 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4658nnn/GSM4658369/ Sample Accession: GSM4658369 ID: 304658369 3822. LT_HSC_GP91_2 [ATAC-Seq] Organism: Homo sapiens Source name: Cord blood Platform: GPL16791 Series: GSE153910 GSE153917 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4658nnn/GSM4658368/ Sample Accession: GSM4658368 ID: 304658368 3823. LT_HSC_GP91_1 [ATAC-Seq] Organism: Homo sapiens Source name: Cord blood Platform: GPL16791 Series: GSE153910 GSE153917 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4658nnn/GSM4658367/ Sample Accession: GSM4658367 ID: 304658367 3824. ATAC-seq wing bud HH24 replicate 2 Organism: Gallus gallus Source name: wing buds Platform: GPL19787 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843127 Sample Accession: GSM5017902 ID: 305017902 3825. ATAC-seq wing bud HH24 replicate 1 Organism: Gallus gallus Source name: wing buds Platform: GPL19787 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843126 Sample Accession: GSM5017901 ID: 305017901 3826. ATAC-seq wing bud HH22 replicate 2 Organism: Gallus gallus Source name: wing buds Platform: GPL19787 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843125 Sample Accession: GSM5017900 ID: 305017900 3827. ATAC-seq wing bud HH22 replicate 1 Organism: Gallus gallus Source name: wing buds Platform: GPL19787 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843124 Sample Accession: GSM5017899 ID: 305017899 3828. ATAC-seq wing bud HH20 replicate 2 Organism: Gallus gallus Source name: wing buds Platform: GPL19787 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843123 Sample Accession: GSM5017898 ID: 305017898 3829. ATAC-seq wing bud HH20 replicate 1 Organism: Gallus gallus Source name: wing buds Platform: GPL19787 Series: GSE164736 GSE164738 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5017nnn/GSM5017897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9843122 Sample Accession: GSM5017897 ID: 305017897 3830. T cell KO ATAC rep3 Organism: Mus musculus Source name: Naive CD4 T cell Platform: GPL13112 Series: GSE175569 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11000884 Sample Accession: GSM5341906 ID: 305341906 3831. T cell WT ATAC rep3 Organism: Mus musculus Source name: Naive CD4 T cell Platform: GPL13112 Series: GSE175569 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11000883 Sample Accession: GSM5341905 ID: 305341905 3832. T cell KO ATAC rep2 Organism: Mus musculus Source name: Naive CD4 T cell Platform: GPL13112 Series: GSE175569 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11000882 Sample Accession: GSM5341904 ID: 305341904 3833. T cell WT ATAC rep2 Organism: Mus musculus Source name: Naive CD4 T cell Platform: GPL13112 Series: GSE175569 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11000881 Sample Accession: GSM5341903 ID: 305341903 3834. T cell KO ATAC rep1 Organism: Mus musculus Source name: Naive CD4 T cell Platform: GPL13112 Series: GSE175569 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11000879 Sample Accession: GSM5341902 ID: 305341902 3835. T cell WT ATAC rep1 Organism: Mus musculus Source name: Naive CD4 T cell Platform: GPL13112 Series: GSE175569 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11000878 Sample Accession: GSM5341901 ID: 305341901 3836. ATAC-seq in AtT-20 expressing Pax7 S264E Organism: Mus musculus Source name: AtT-20 cells expressing 3x flag-Pax7 Platform: GPL13112 Series: GSE173741 GSE173743 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5277nnn/GSM5277734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10759312 Sample Accession: GSM5277734 ID: 305277734 3837. ATAC-seq in AtT-20 expressing Pax7 R56L Organism: Mus musculus Source name: AtT-20 cells expressing 3x flag-Pax7 Platform: GPL13112 Series: GSE173741 GSE173743 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5277nnn/GSM5277733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10759311 Sample Accession: GSM5277733 ID: 305277733 3838. ATAC-seq in AtT-20 expressing Pax7 G43A Organism: Mus musculus Source name: AtT-20 cells expressing 3x flag-Pax7 Platform: GPL13112 Series: GSE173741 GSE173743 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5277nnn/GSM5277732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10759310 Sample Accession: GSM5277732 ID: 305277732 3839. ATAC-seq_P11_2 Organism: Rattus norvegicus Source name: Retinal Ganglion Cell Platform: GPL22396 Series: GSE163562 GSE163564 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4981nnn/GSM4981855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9707912 Sample Accession: GSM4981855 ID: 304981855 3840. ATAC-seq_P11_1 Organism: Rattus norvegicus Source name: Retinal Ganglion Cell Platform: GPL22396 Series: GSE163562 GSE163564 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4981nnn/GSM4981854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9707911 Sample Accession: GSM4981854 ID: 304981854 3841. ATAC-seq_E21_2 Organism: Rattus norvegicus Source name: Retinal Ganglion Cell Platform: GPL22396 Series: GSE163562 GSE163564 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4981nnn/GSM4981853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9707910 Sample Accession: GSM4981853 ID: 304981853 3842. ATAC-seq_E21_1 Organism: Rattus norvegicus Source name: Retinal Ganglion Cell Platform: GPL22396 Series: GSE163562 GSE163564 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4981nnn/GSM4981852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9707909 Sample Accession: GSM4981852 ID: 304981852 3843. ATAC seq ko2-4 Organism: Mus musculus Source name: LSK Platform: GPL17021 Series: GSE161613 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4910nnn/GSM4910811/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9520173 Sample Accession: GSM4910811 ID: 304910811 3844. ATAC seq ko2-2 Organism: Mus musculus Source name: LSK Platform: GPL17021 Series: GSE161613 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4910nnn/GSM4910810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9520172 Sample Accession: GSM4910810 ID: 304910810 3845. ATAC seq wt2-3 Organism: Mus musculus Source name: LSK Platform: GPL17021 Series: GSE161613 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4910nnn/GSM4910809/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9520171 Sample Accession: GSM4910809 ID: 304910809 3846. ATAC seq wt2-1 Organism: Mus musculus Source name: LSK Platform: GPL17021 Series: GSE161613 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4910nnn/GSM4910808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9520170 Sample Accession: GSM4910808 ID: 304910808 3847. WSB-M Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495219 Sample Accession: GSM5461512 ID: 305461512 3848. WSB-F Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495218 Sample Accession: GSM5461511 ID: 305461511 3849. PWK-M Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495217 Sample Accession: GSM5461510 ID: 305461510 3850. PWK-F Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495216 Sample Accession: GSM5461509 ID: 305461509 3851. NZO-M Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495215 Sample Accession: GSM5461508 ID: 305461508 3852. NZO-F Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495214 Sample Accession: GSM5461507 ID: 305461507 3853. NOD-M Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495213 Sample Accession: GSM5461506 ID: 305461506 3854. NOD-F Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495212 Sample Accession: GSM5461505 ID: 305461505 3855. CAST-M Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495211 Sample Accession: GSM5461504 ID: 305461504 3856. CAST-F Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495210 Sample Accession: GSM5461503 ID: 305461503 3857. B6-M Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495209 Sample Accession: GSM5461502 ID: 305461502 3858. B6-F Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495208 Sample Accession: GSM5461501 ID: 305461501 3859. AJ-M Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495207 Sample Accession: GSM5461500 ID: 305461500 3860. AJ-F Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495206 Sample Accession: GSM5461499 ID: 305461499 3861. 129-M Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495205 Sample Accession: GSM5461498 ID: 305461498 3862. 129-F Organism: Mus musculus Source name: pancreatic islet Platform: GPL17021 Series: GSE180363 GSE180810 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11495204 Sample Accession: GSM5461497 ID: 305461497 3863. ATAC-seq_ILC2P_rep2 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437072 Sample Accession: GSM5209034 ID: 305209034 3864. ATAC-seq_ILC2P_rep1 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437071 Sample Accession: GSM5209033 ID: 305209033 3865. ATAC-seq_ILCP_rep2 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437070 Sample Accession: GSM5209032 ID: 305209032 3866. ATAC-seq_ILCP_rep1 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437069 Sample Accession: GSM5209031 ID: 305209031 3867. ATAC-seq_iILCP_rep2 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437068 Sample Accession: GSM5209030 ID: 305209030 3868. ATAC-seq_iILCP_rep1 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437067 Sample Accession: GSM5209029 ID: 305209029 3869. ATAC-seq_rEILP_rep2 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437066 Sample Accession: GSM5209028 ID: 305209028 3870. ATAC-seq_rEILP_rep1 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437065 Sample Accession: GSM5209027 ID: 305209027 3871. ATAC-seq_Flt3p_aLP_rep2 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437064 Sample Accession: GSM5209026 ID: 305209026 3872. ATAC-seq_Flt3p_aLP_rep1 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437063 Sample Accession: GSM5209025 ID: 305209025 3873. ATAC-seq_CLP_rep2 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437062 Sample Accession: GSM5209024 ID: 305209024 3874. ATAC-seq_CLP_rep1 Organism: Mus musculus Source name: Bone Marrow Platform: GPL21103 Series: GSE169542 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5209nnn/GSM5209023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10437061 Sample Accession: GSM5209023 ID: 305209023 3875. E13.5 wild-type forebrain ATAC-seq Organism: Mus musculus Source name: forebrain Platform: GPL19057 Series: GSE165490 GSE165495 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9934231 Sample Accession: GSM5034634 ID: 305034634 3876. E12.5 inv2 proximal forelimb ATAC-seq Organism: Mus musculus Source name: proximal forelimb Platform: GPL19057 Series: GSE165490 GSE165495 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9934230 Sample Accession: GSM5034633 ID: 305034633 3877. E12.5 inv2 distal forelimb ATAC-seq Organism: Mus musculus Source name: distal forelimb Platform: GPL19057 Series: GSE165490 GSE165495 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9934229 Sample Accession: GSM5034632 ID: 305034632 3878. E12.5 wild-type proximal forelimb ATAC-seq Organism: Mus musculus Source name: proximal forelimb Platform: GPL19057 Series: GSE165490 GSE165495 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9934228 Sample Accession: GSM5034631 ID: 305034631 3879. E12.5 wild-type distal forelimb ATAC-seq Organism: Mus musculus Source name: distal forelimb Platform: GPL19057 Series: GSE165490 GSE165495 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9934227 Sample Accession: GSM5034630 ID: 305034630 3880. RA+vitC.Ad2.9 [ATAC-seq] Organism: Mus musculus Source name: RA+vitC.Ad2.9 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237367 Sample Accession: GSM4196210 ID: 304196210 3881. RA.Ad2.8 [ATAC-seq] Organism: Mus musculus Source name: RA.Ad2.8 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237366 Sample Accession: GSM4196209 ID: 304196209 3882. vitC.Ad2.7 [ATAC-seq] Organism: Mus musculus Source name: vitC.Ad2.7 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237365 Sample Accession: GSM4196208 ID: 304196208 3883. TGF.Ad2.6 [ATAC-seq] Organism: Mus musculus Source name: TGF.Ad2.6 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237364 Sample Accession: GSM4196207 ID: 304196207 3884. Th0.Ad2.5 [ATAC-seq] Organism: Mus musculus Source name: Th0.Ad2.5 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237363 Sample Accession: GSM4196206 ID: 304196206 3885. RA+vitC.Ad2.4 [ATAC-seq] Organism: Mus musculus Source name: RA+vitC.Ad2.4 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237362 Sample Accession: GSM4196205 ID: 304196205 3886. RA.Ad2.3 [ATAC-seq] Organism: Mus musculus Source name: RA.Ad2.3 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237361 Sample Accession: GSM4196204 ID: 304196204 3887. vitC.Ad2.2 [ATAC-seq] Organism: Mus musculus Source name: vitC.Ad2.2 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237360 Sample Accession: GSM4196203 ID: 304196203 3888. DKO.Treg.Ad2.14 [ATAC-seq] Organism: Mus musculus Source name: DKO.Treg.Ad2.14 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237359 Sample Accession: GSM4196202 ID: 304196202 3889. DKO.Treg.Ad2.13 [ATAC-seq] Organism: Mus musculus Source name: DKO.Treg.Ad2.13 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237358 Sample Accession: GSM4196201 ID: 304196201 3890. WT.Treg.Ad2.12 [ATAC-seq] Organism: Mus musculus Source name: WT.Treg.Ad2.12 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237357 Sample Accession: GSM4196200 ID: 304196200 3891. WT.Treg.Ad2.11 [ATAC-seq] Organism: Mus musculus Source name: WT.Treg.Ad2.11 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237356 Sample Accession: GSM4196199 ID: 304196199 3892. Th0.Ad2.10 [ATAC-seq] Organism: Mus musculus Source name: Th0.Ad2.10 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237355 Sample Accession: GSM4196198 ID: 304196198 3893. TGF.Ad2.1 [ATAC-seq] Organism: Mus musculus Source name: TGF.Ad2.1 Platform: GPL17021 Series: GSE141149 GSE141152 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7237354 Sample Accession: GSM4196197 ID: 304196197 3894. TMPyP4-ATAC-seq-TMPyP4 Organism: Homo sapiens Source name: HEK293T Platform: GPL24676 Series: GSE178668 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5395nnn/GSM5395740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11196932 Sample Accession: GSM5395740 ID: 305395740 3895. TMPyP4-ATAC-seq-DMSO Organism: Homo sapiens Source name: HEK293T Platform: GPL24676 Series: GSE178668 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5395nnn/GSM5395739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11196931 Sample Accession: GSM5395739 ID: 305395739 3896. ATAC-293T Organism: Homo sapiens Source name: HEK293T Platform: GPL24676 Series: GSE178668 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5395nnn/GSM5395701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11196893 Sample Accession: GSM5395701 ID: 305395701 3897. ATAC-seq_Control 100 days_rotenone Organism: Mus musculus Source name: control murine dermal fibroblasts treated with rotenone 250µM Platform: GPL19057 Series: GSE180007 GSE180009 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5444nnn/GSM5444775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11430905 Sample Accession: GSM5444775 ID: 305444775 3898. ATAC-seq_Control 100 days_vehicle Organism: Mus musculus Source name: control murine dermal fibroblasts treated with vehicle Platform: GPL19057 Series: GSE180007 GSE180009 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5444nnn/GSM5444774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11430904 Sample Accession: GSM5444774 ID: 305444774 3899. ATAC-seq_Conditional knockout 100 days Organism: Mus musculus Source name: Sod2 mutant murine dermal fibroblasts Platform: GPL19057 Series: GSE180007 GSE180009 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5444nnn/GSM5444773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11430903 Sample Accession: GSM5444773 ID: 305444773 3900. ATAC-seq_Control 100 days Organism: Mus musculus Source name: control murine dermal fibroblasts Platform: GPL19057 Series: GSE180007 GSE180009 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5444nnn/GSM5444772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11430902 Sample Accession: GSM5444772 ID: 305444772 3901. ATAC-seq_MGT#1-low_FAC-sorted-A549-MGT#1_TGFB1_rep2 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823231 Sample Accession: GSM4695800 ID: 304695800 3902. ATAC-seq_MGT#1-low_FAC-sorted-A549-MGT#1_TGFB1_rep1 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823230 Sample Accession: GSM4695799 ID: 304695799 3903. ATAC-seq_MGT#1-high_FAC-sorted-A549-MGT#1_TGFB1_rep2 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823229 Sample Accession: GSM4695798 ID: 304695798 3904. ATAC-seq_MGT#1-high_FAC-sorted-A549-MGT#1_TGFB1_rep1 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823228 Sample Accession: GSM4695797 ID: 304695797 3905. ATAC-seq_MGT#1-low_FAC-sorted-A549-MGT#1_GSK126_rep2 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823227 Sample Accession: GSM4695796 ID: 304695796 3906. ATAC-seq_MGT#1-low_FAC-sorted-A549-MGT#1_GSK126_rep1 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823226 Sample Accession: GSM4695795 ID: 304695795 3907. ATAC-seq_MGT#1-high_FAC-sorted-A549-MGT#1_GSK126_rep2 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823225 Sample Accession: GSM4695794 ID: 304695794 3908. ATAC-seq_MGT#1-high_FAC-sorted-A549-MGT#1_GSK126_rep1 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823224 Sample Accession: GSM4695793 ID: 304695793 3909. ATAC-seq_A549-MGT#1_rep2 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823223 Sample Accession: GSM4695792 ID: 304695792 3910. ATAC-seq_A549-MGT#1_rep1 Organism: Homo sapiens Source name: A549 Platform: GPL11154 Series: GSE155116 GSE155117 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4695nnn/GSM4695791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8823222 Sample Accession: GSM4695791 ID: 304695791 3911. PV+ cSNAIL ATAC-seq E4_M1_PVpos Organism: Mus musculus Source name: cortex Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498815 Sample Accession: GSM4905628 ID: 304905628 3912. PV+ cSNAIL ATAC-seq E3_M1_PVpos Organism: Mus musculus Source name: cortex Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498814 Sample Accession: GSM4905627 ID: 304905627 3913. PV+ cSNAIL ATAC-seq E2_M1_PVpos Organism: Mus musculus Source name: cortex Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498813 Sample Accession: GSM4905626 ID: 304905626 3914. Bulk ATAC-seq, mouse, 090417B_STR1_S7 Organism: Mus musculus Source name: Striatum Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498792 Sample Accession: GSM4905605 ID: 304905605 3915. Bulk ATAC-seq, mouse, 090417B_CTX2_S6 Organism: Mus musculus Source name: Cortex Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498791 Sample Accession: GSM4905604 ID: 304905604 3916. Bulk ATAC-seq, mouse, 082917B_STR2_S4 Organism: Mus musculus Source name: Striatum Platform: GPL19057 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498790 Sample Accession: GSM4905603 ID: 304905603 3917. Bulk ATAC-seq, mouse, 082917B_STR1_S3 Organism: Mus musculus Source name: Striatum Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498789 Sample Accession: GSM4905602 ID: 304905602 3918. Bulk ATAC-seq, mouse, 082917B_CTX2_S2 Organism: Mus musculus Source name: Cortex Platform: GPL19057 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498788 Sample Accession: GSM4905601 ID: 304905601 3919. Bulk ATAC-seq, mouse, 082917B_CTX1_S1 Organism: Mus musculus Source name: Cortex Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498787 Sample Accession: GSM4905600 ID: 304905600 3920. Bulk ATAC-seq, mouse, 082417C_STR2_S7 Organism: Mus musculus Source name: Striatum Platform: GPL19057 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498786 Sample Accession: GSM4905599 ID: 304905599 3921. Bulk ATAC-seq, mouse, 082417C_STR1_S6 Organism: Mus musculus Source name: Striatum Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498785 Sample Accession: GSM4905598 ID: 304905598 3922. Bulk ATAC-seq, mouse, 082417C_CTX2_S5 Organism: Mus musculus Source name: Cortex Platform: GPL19057 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498784 Sample Accession: GSM4905597 ID: 304905597 3923. Bulk ATAC-seq, mouse, 082417C_CTX1_S4 Organism: Mus musculus Source name: Cortex Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498783 Sample Accession: GSM4905596 ID: 304905596 3924. Bulk ATAC-seq, mouse, 082317C_STR_S2 Organism: Mus musculus Source name: Striatum Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498782 Sample Accession: GSM4905595 ID: 304905595 3925. Bulk ATAC-seq, mouse, 082317C_CTX_S1 Organism: Mus musculus Source name: Cortex Platform: GPL19057 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498781 Sample Accession: GSM4905594 ID: 304905594 3926. SST+ cSNAIL ATAC-seq Y2Spos [Y2Spos_CKDL190142778-1a-N707-N506_HMHTYDSXX_L4] Organism: Mus musculus Source name: Striatum Platform: GPL24247 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498812 Sample Accession: GSM4905625 ID: 304905625 3927. SST+ cSNAIL ATAC-seq Y2Spos [Y2Spos_CKDL190142778-1a-N707-N506_HMHTYDSXX_L3] Organism: Mus musculus Source name: Striatum Platform: GPL24247 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498811 Sample Accession: GSM4905624 ID: 304905624 3928. SST+ cSNAIL ATAC-seq Y2Spos [Y2Spos_CKDL190142778-1a-N707-N506_HMHTYDSXX_L2] Organism: Mus musculus Source name: Striatum Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498810 Sample Accession: GSM4905623 ID: 304905623 3929. SST+ cSNAIL ATAC-seq Y2Cpos [Y2Cpos_CKDL190142778-1a-N705-N506_HMHTYDSXX_L4] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498809 Sample Accession: GSM4905622 ID: 304905622 3930. SST+ cSNAIL ATAC-seq Y2Cpos [Y2Cpos_CKDL190142778-1a-N705-N506_HMHTYDSXX_L3] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498808 Sample Accession: GSM4905621 ID: 304905621 3931. SST+ cSNAIL ATAC-seq Y2Cpos [Y2Cpos_CKDL190142778-1a-N705-N506_HMHTYDSXX_L2] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498807 Sample Accession: GSM4905620 ID: 304905620 3932. SST+ cSNAIL ATAC-seq Y1Spos [Y1Spos_CKDL190142778-1a-N711-N506_HMHTYDSXX_L4] Organism: Mus musculus Source name: Striatum Platform: GPL24247 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498806 Sample Accession: GSM4905619 ID: 304905619 3933. SST+ cSNAIL ATAC-seq Y1Spos [Y1Spos_CKDL190142778-1a-N711-N506_HMHTYDSXX_L3] Organism: Mus musculus Source name: Striatum Platform: GPL24247 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498805 Sample Accession: GSM4905618 ID: 304905618 3934. SST+ cSNAIL ATAC-seq Y1Spos [Y1Spos_CKDL190142778-1a-N711-N506_HMHTYDSXX_L2] Organism: Mus musculus Source name: Striatum Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498804 Sample Accession: GSM4905617 ID: 304905617 3935. SST+ cSNAIL ATAC-seq Y1Cpos [CKDL190142778-1a-N709-N506_HMHTYDSXX_L4] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498803 Sample Accession: GSM4905616 ID: 304905616 3936. SST+ cSNAIL ATAC-seq Y1Cpos [CKDL190142778-1a-N709-N506_HMHTYDSXX_L3] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE161374 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498802 Sample Accession: GSM4905615 ID: 304905615 3937. SST+ cSNAIL ATAC-seq Y1Cpos [CKDL190142778-1a-N709-N506_HMHTYDSXX_L2] Organism: Mus musculus Source name: Cortex Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498801 Sample Accession: GSM4905614 ID: 304905614 3938. EY1341 Cpu D2+ [YD3B] Organism: Mus musculus Source name: Dorsal striatum Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498800 Sample Accession: GSM4905613 ID: 304905613 3939. EY1341 NAcc D2+ [YD1B] Organism: Mus musculus Source name: Nucleus accumbens Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498799 Sample Accession: GSM4905612 ID: 304905612 3940. EY1340 Cpu D2+ [YD3A] Organism: Mus musculus Source name: Dorsal striatum Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498798 Sample Accession: GSM4905611 ID: 304905611 3941. EY1340 NAcc D2+ [YD1A] Organism: Mus musculus Source name: Nucleus accumbens Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498797 Sample Accession: GSM4905610 ID: 304905610 3942. EY1166 Cpu D1+ [YN3B] Organism: Mus musculus Source name: Dorsal striatum Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498796 Sample Accession: GSM4905609 ID: 304905609 3943. EY1166 NAcc D1+ [YN1B] Organism: Mus musculus Source name: Nucleus accumbens Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498795 Sample Accession: GSM4905608 ID: 304905608 3944. EY1311 Cpu D1+ [YN3A] Organism: Mus musculus Source name: Dorsal striatum Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498794 Sample Accession: GSM4905607 ID: 304905607 3945. EY1311 NAcc D1+ [YN1A] Organism: Mus musculus Source name: Nucleus accumbens Platform: GPL24247 Series: GSE161374 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498793 Sample Accession: GSM4905606 ID: 304905606 3946. ATAC_MiaPaCa2_2 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8856758 Sample Accession: GSM5434032 ID: 305434032 3947. ATAC_MiaPaCa2_1 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8856757 Sample Accession: GSM5434031 ID: 305434031 3948. ATAC_PANC1_3 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8855401 Sample Accession: GSM5434030 ID: 305434030 3949. ATAC_PANC1_2 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8855400 Sample Accession: GSM5434029 ID: 305434029 3950. ATAC_PANC1_1 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8855402 Sample Accession: GSM5434028 ID: 305434028 3951. ATAC_CAPAN2_3 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8856764 Sample Accession: GSM5434027 ID: 305434027 3952. ATAC_CAPAN2_2 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8856763 Sample Accession: GSM5434026 ID: 305434026 3953. ATAC_CAPAN2_1 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8856762 Sample Accession: GSM5434025 ID: 305434025 3954. ATAC_CAPAN1_3 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8856761 Sample Accession: GSM5434024 ID: 305434024 3955. ATAC_CAPAN1_2 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8856760 Sample Accession: GSM5434023 ID: 305434023 3956. ATAC_CAPAN1_1 Organism: Homo sapiens Source name: Pancreatic cancer Platform: GPL20301 Series: GSE173159 GSE179781 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5434nnn/GSM5434022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8856759 Sample Accession: GSM5434022 ID: 305434022 3957. ATAC-seq_Young sample_2 Organism: Mus musculus Source name: cell culture Platform: GPL17021 Series: GSE143578 GSE143580 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7549700 Sample Accession: GSM4262971 ID: 304262971 3958. ATAC-seq_Young sample_1 Organism: Mus musculus Source name: cell culture Platform: GPL17021 Series: GSE143578 GSE143580 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7549699 Sample Accession: GSM4262970 ID: 304262970 3959. ATAC-seq_Old sample_2 Organism: Mus musculus Source name: cell culture Platform: GPL17021 Series: GSE143578 GSE143580 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7549698 Sample Accession: GSM4262969 ID: 304262969 3960. ATAC-seq_Old sample_1 Organism: Mus musculus Source name: cell culture Platform: GPL17021 Series: GSE143578 GSE143580 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7549697 Sample Accession: GSM4262968 ID: 304262968 3961. ATAC-seq_Naive_DOHH_WT_4 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088472 Sample Accession: GSM4771483 ID: 304771483 3962. ATAC-seq_Naive_DOHH_KO_4 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088471 Sample Accession: GSM4771482 ID: 304771482 3963. ATAC-seq_Treg_ODC_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088470 Sample Accession: GSM4771481 ID: 304771481 3964. ATAC-seq_Treg_ODC_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088469 Sample Accession: GSM4771480 ID: 304771480 3965. ATAC-seq_TH2_ODC_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088468 Sample Accession: GSM4771479 ID: 304771479 3966. ATAC-seq_TH2_ODC_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088467 Sample Accession: GSM4771478 ID: 304771478 3967. ATAC-seq_TH1_ODC_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088466 Sample Accession: GSM4771477 ID: 304771477 3968. ATAC-seq_TH1_ODC_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088465 Sample Accession: GSM4771476 ID: 304771476 3969. ATAC-seq_TH17_ODC_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088464 Sample Accession: GSM4771475 ID: 304771475 3970. ATAC-seq_TH17_ODC_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088463 Sample Accession: GSM4771474 ID: 304771474 3971. ATAC-seq_Treg_DOHH_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088462 Sample Accession: GSM4771473 ID: 304771473 3972. ATAC-seq_Treg_DOHH_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088461 Sample Accession: GSM4771472 ID: 304771472 3973. ATAC-seq_TH2_DOHH_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088460 Sample Accession: GSM4771471 ID: 304771471 3974. ATAC-seq_TH2_DOHH_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088459 Sample Accession: GSM4771470 ID: 304771470 3975. ATAC-seq_TH1_DOHH_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088458 Sample Accession: GSM4771469 ID: 304771469 3976. ATAC-seq_TH1_DOHH_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088457 Sample Accession: GSM4771468 ID: 304771468 3977. ATAC-seq_TH17_DOHH_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088456 Sample Accession: GSM4771467 ID: 304771467 3978. ATAC-seq_TH17_DOHH_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088455 Sample Accession: GSM4771466 ID: 304771466 3979. ATAC-seq_Naive_DOHH_WT_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088454 Sample Accession: GSM4771465 ID: 304771465 3980. ATAC-seq_Naive_DOHH_KO_3 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088453 Sample Accession: GSM4771464 ID: 304771464 3981. ATAC-seq_Treg_ODC_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088452 Sample Accession: GSM4771463 ID: 304771463 3982. ATAC-seq_Treg_ODC_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088451 Sample Accession: GSM4771462 ID: 304771462 3983. ATAC-seq_TH2_ODC_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088450 Sample Accession: GSM4771461 ID: 304771461 3984. ATAC-seq_TH2_ODC_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088449 Sample Accession: GSM4771460 ID: 304771460 3985. ATAC-seq_TH1_ODC_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088448 Sample Accession: GSM4771459 ID: 304771459 3986. ATAC-seq_TH1_ODC_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088447 Sample Accession: GSM4771458 ID: 304771458 3987. ATAC-seq_TH17_ODC_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088446 Sample Accession: GSM4771457 ID: 304771457 3988. ATAC-seq_TH17_ODC_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088445 Sample Accession: GSM4771456 ID: 304771456 3989. ATAC-seq_Treg_DOHH_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088444 Sample Accession: GSM4771455 ID: 304771455 3990. ATAC-seq_Treg_DOHH_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088443 Sample Accession: GSM4771454 ID: 304771454 3991. ATAC-seq_TH2_DOHH_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088442 Sample Accession: GSM4771453 ID: 304771453 3992. ATAC-seq_TH2_DOHH_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088441 Sample Accession: GSM4771452 ID: 304771452 3993. ATAC-seq_TH1_DOHH_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088440 Sample Accession: GSM4771451 ID: 304771451 3994. ATAC-seq_TH1_DOHH_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088439 Sample Accession: GSM4771450 ID: 304771450 3995. ATAC-seq_TH17_DOHH_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088438 Sample Accession: GSM4771449 ID: 304771449 3996. ATAC-seq_TH17_DOHH_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088437 Sample Accession: GSM4771448 ID: 304771448 3997. ATAC-seq_Naive_DOHH_WT_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088436 Sample Accession: GSM4771447 ID: 304771447 3998. ATAC-seq_Naive_DOHH_KO_2 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088435 Sample Accession: GSM4771446 ID: 304771446 3999. ATAC-seq_Treg_ODC_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088434 Sample Accession: GSM4771445 ID: 304771445 4000. ATAC-seq_Treg_ODC_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088433 Sample Accession: GSM4771444 ID: 304771444 4001. ATAC-seq_TH2_ODC_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088432 Sample Accession: GSM4771443 ID: 304771443 4002. ATAC-seq_TH2_ODC_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088431 Sample Accession: GSM4771442 ID: 304771442 4003. ATAC-seq_TH1_ODC_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088430 Sample Accession: GSM4771441 ID: 304771441 4004. ATAC-seq_TH1_ODC_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088429 Sample Accession: GSM4771440 ID: 304771440 4005. ATAC-seq_TH17_ODC_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088428 Sample Accession: GSM4771439 ID: 304771439 4006. ATAC-seq_TH17_ODC_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088427 Sample Accession: GSM4771438 ID: 304771438 4007. ATAC-seq_Treg_DOHH_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088426 Sample Accession: GSM4771437 ID: 304771437 4008. ATAC-seq_Treg_DOHH_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088425 Sample Accession: GSM4771436 ID: 304771436 4009. ATAC-seq_TH2_DOHH_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088424 Sample Accession: GSM4771435 ID: 304771435 4010. ATAC-seq_TH2_DOHH_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088423 Sample Accession: GSM4771434 ID: 304771434 4011. ATAC-seq_TH1_DOHH_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088422 Sample Accession: GSM4771433 ID: 304771433 4012. ATAC-seq_TH1_DOHH_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088421 Sample Accession: GSM4771432 ID: 304771432 4013. ATAC-seq_TH17_DOHH_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088420 Sample Accession: GSM4771431 ID: 304771431 4014. ATAC-seq_TH17_DOHH_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088419 Sample Accession: GSM4771430 ID: 304771430 4015. ATAC-seq_Naive_DOHH_WT_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088418 Sample Accession: GSM4771429 ID: 304771429 4016. ATAC-seq_Naive_DOHH_KO_1 Organism: Mus musculus Source name: Spleen and Lymph node Platform: GPL21493 Series: GSE157597 GSE157598 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088417 Sample Accession: GSM4771428 ID: 304771428 4017. ATAC-seq mouse CD8+ T EV rep2 Organism: Mus musculus Source name: spleen Platform: GPL21493 Series: GSE138698 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4976nnn/GSM4976222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9725148 Sample Accession: GSM4976222 ID: 304976222 4018. ATAC-seq mouse CD8+ T STAT5CA rep2 Organism: Mus musculus Source name: spleen Platform: GPL21493 Series: GSE138698 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4976nnn/GSM4976221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9725147 Sample Accession: GSM4976221 ID: 304976221 4019. ATAC-seq mouse CD8+ T EV rep1 Organism: Mus musculus Source name: spleen Platform: GPL21493 Series: GSE138698 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4976nnn/GSM4976220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9725146 Sample Accession: GSM4976220 ID: 304976220 4020. ATAC-seq mouse CD8+ T STAT5CA rep1 Organism: Mus musculus Source name: spleen Platform: GPL21493 Series: GSE138698 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4976nnn/GSM4976219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9725145 Sample Accession: GSM4976219 ID: 304976219 4021. ATAC-Seq H9T d6 Organism: Mus musculus Source name: spleen Platform: GPL21493 Series: GSE138698 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4116nnn/GSM4116427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6975560 Sample Accession: GSM4116427 ID: 304116427 4022. ATAC-Seq H9 d6 Organism: Mus musculus Source name: spleen Platform: GPL21493 Series: GSE138698 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4116nnn/GSM4116426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6975559 Sample Accession: GSM4116426 ID: 304116426 4023. ATAC-Seq IL2 d6 Organism: Mus musculus Source name: spleen Platform: GPL21493 Series: GSE138698 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4116nnn/GSM4116425/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6975558 Sample Accession: GSM4116425 ID: 304116425 4024. ATAC-Seq d0 Organism: Mus musculus Source name: spleen Platform: GPL21493 Series: GSE138698 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4116nnn/GSM4116424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6975557 Sample Accession: GSM4116424 ID: 304116424 4025. Primed_BRG1_HET Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197606 Sample Accession: GSM5121157 ID: 305121157 4026. Primed_BRG1_WT Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197605 Sample Accession: GSM5121156 ID: 305121156 4027. Re-Priming_BRG1_KO_rep3 Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197604 Sample Accession: GSM5121155 ID: 305121155 4028. Re-Priming_BRG1_KO_rep2 Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197603 Sample Accession: GSM5121154 ID: 305121154 4029. Re-Priming_BRG1_KO_rep1 Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197602 Sample Accession: GSM5121153 ID: 305121153 4030. Re-Priming_BRG1_HET Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197601 Sample Accession: GSM5121152 ID: 305121152 4031. Re-Priming_BRG1_WT Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197600 Sample Accession: GSM5121151 ID: 305121151 4032. Naive_BRG1_KO_rep2 Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197599 Sample Accession: GSM5121150 ID: 305121150 4033. Naive_BRG1_KO_rep1 Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197598 Sample Accession: GSM5121149 ID: 305121149 4034. Naive_BRG1_HET Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197597 Sample Accession: GSM5121148 ID: 305121148 4035. Naive_BRG1_WT Organism: Homo sapiens Source name: hPSC Platform: GPL18573 Series: GSE167979 GSE168002 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5121nnn/GSM5121147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10197596 Sample Accession: GSM5121147 ID: 305121147 4036. E12_G4ko_ATAC_rep4 Organism: Mus musculus Source name: E12.5 ventricular apex Platform: GPL19057 Series: GSE156001 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8920570 Sample Accession: GSM4718829 ID: 304718829 4037. E12_G4ko_ATAC_rep3 Organism: Mus musculus Source name: E12.5 ventricular apex Platform: GPL19057 Series: GSE156001 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8920569 Sample Accession: GSM4718828 ID: 304718828 4038. E12_G4ko_ATAC_rep2 Organism: Mus musculus Source name: E12.5 ventricular apex Platform: GPL19057 Series: GSE156001 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8920568 Sample Accession: GSM4718827 ID: 304718827 4039. E12_G4het_ATAC_rep4 Organism: Mus musculus Source name: E12.5 ventricular apex Platform: GPL19057 Series: GSE156001 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718826/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8920567 Sample Accession: GSM4718826 ID: 304718826 4040. E12_G4het_ATAC_rep3 Organism: Mus musculus Source name: E12.5 ventricular apex Platform: GPL19057 Series: GSE156001 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8920587 Sample Accession: GSM4718825 ID: 304718825 4041. E12_G4het_ATAC_rep2 Organism: Mus musculus Source name: E12.5 ventricular apex Platform: GPL19057 Series: GSE156001 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8920586 Sample Accession: GSM4718824 ID: 304718824 4042. E12_EC_ATAC_rep3 Organism: Mus musculus Source name: E12.5 ventricular apex Platform: GPL19057 Series: GSE156001 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8920578 Sample Accession: GSM4718816 ID: 304718816 4043. E12_EC_ATAC_rep2 Organism: Mus musculus Source name: E12.5 ventricular apex Platform: GPL19057 Series: GSE156001 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8920577 Sample Accession: GSM4718815 ID: 304718815 4044. ATAC-seq_15h_rep2 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950505 Sample Accession: GSM5327549 ID: 305327549 4045. ATAC-seq_15h_rep1 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950504 Sample Accession: GSM5327548 ID: 305327548 4046. ATAC-seq_12h_rep2 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950503 Sample Accession: GSM5327547 ID: 305327547 4047. ATAC-seq_12h_rep1 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950502 Sample Accession: GSM5327546 ID: 305327546 4048. ATAC-seq_9h_rep2 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950501 Sample Accession: GSM5327545 ID: 305327545 4049. ATAC-seq_9h_rep1 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950500 Sample Accession: GSM5327544 ID: 305327544 4050. ATAC-seq_6h_rep2 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950499 Sample Accession: GSM5327543 ID: 305327543 4051. ATAC-seq_6h_rep1 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950498 Sample Accession: GSM5327542 ID: 305327542 4052. ATAC-seq_3h_rep2 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950497 Sample Accession: GSM5327541 ID: 305327541 4053. ATAC-seq_3h_rep1 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950496 Sample Accession: GSM5327540 ID: 305327540 4054. ATAC-seq_0h_rep2 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950495 Sample Accession: GSM5327539 ID: 305327539 4055. ATAC-seq_0h_rep1 Organism: Mus musculus Source name: ZHBTc4 mouse embryonic stem cell Platform: GPL21626 Series: GSE174774 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5327nnn/GSM5327538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950494 Sample Accession: GSM5327538 ID: 305327538 4056. fetal end rep2 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_fetal end Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730795 Sample Accession: GSM4987821 ID: 304987821 4057. fetal end rep1 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_fetal end Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730794 Sample Accession: GSM4987820 ID: 304987820 4058. fetal start rep2 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_fetal start Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730793 Sample Accession: GSM4987819 ID: 304987819 4059. fetal start rep1 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_fetal start Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730792 Sample Accession: GSM4987818 ID: 304987818 4060. NRS rep5 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_NRS Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730791 Sample Accession: GSM4987817 ID: 304987817 4061. NRS rep4 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_NRS Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730790 Sample Accession: GSM4987816 ID: 304987816 4062. NRS rep3 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_NRS Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730789 Sample Accession: GSM4987815 ID: 304987815 4063. NRS rep2 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_NRS Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730788 Sample Accession: GSM4987814 ID: 304987814 4064. NRS rep1 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_NRS Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730787 Sample Accession: GSM4987813 ID: 304987813 4065. IMV rep4 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_IMV Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730786 Sample Accession: GSM4987812 ID: 304987812 4066. IMV rep3 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_IMV Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730785 Sample Accession: GSM4987811 ID: 304987811 4067. IMV rep2 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_IMV Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730784 Sample Accession: GSM4987810 ID: 304987810 4068. IMV rep1 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_IMV Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730783 Sample Accession: GSM4987809 ID: 304987809 4069. term rep3 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_term Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730782 Sample Accession: GSM4987808 ID: 304987808 4070. term rep2 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_term Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730781 Sample Accession: GSM4987807 ID: 304987807 4071. term rep1 [ATAC-seq] Organism: Ovis aries Source name: right lower lung lobe_term Platform: GPL19778 Series: GSE163807 GSE163869 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9730780 Sample Accession: GSM4987806 ID: 304987806 4072. ATAC-seq_MONO_2 Organism: Homo sapiens Source name: MONO cells Platform: GPL20795 Series: GSE169451 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5203nnn/GSM5203350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10424895 Sample Accession: GSM5203350 ID: 305203350 4073. ATAC-seq_MONO_1 Organism: Homo sapiens Source name: MONO cells Platform: GPL20795 Series: GSE169451 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5203nnn/GSM5203349/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10424894 Sample Accession: GSM5203349 ID: 305203349 4074. ATAC-seq_TAM_2 Organism: Homo sapiens Source name: TAMs cells Platform: GPL20795 Series: GSE169451 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5203nnn/GSM5203348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10424893 Sample Accession: GSM5203348 ID: 305203348 4075. ATAC-seq_TAM_1 Organism: Homo sapiens Source name: TAMs cells Platform: GPL20795 Series: GSE169451 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5203nnn/GSM5203347/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10424892 Sample Accession: GSM5203347 ID: 305203347 4076. ATAC-seq_shCTCF Organism: Homo sapiens Source name: THP1+PANC1 cell lines Platform: GPL20795 Series: GSE169451 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5203nnn/GSM5203346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10424891 Sample Accession: GSM5203346 ID: 305203346 4077. ATAC-seq_shNC Organism: Homo sapiens Source name: THP1+PANC1 cell lines Platform: GPL20795 Series: GSE169451 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5203nnn/GSM5203345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10424890 Sample Accession: GSM5203345 ID: 305203345 4078. DKO liver rep 2 Organism: Mus musculus Source name: Liver Platform: GPL19057 Series: GSE179050 GSE179053 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5404nnn/GSM5404597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11243805 Sample Accession: GSM5404597 ID: 305404597 4079. DKO liver rep 1 Organism: Mus musculus Source name: Liver Platform: GPL19057 Series: GSE179050 GSE179053 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5404nnn/GSM5404596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11243804 Sample Accession: GSM5404596 ID: 305404596 4080. Ppara liver rep 2 Organism: Mus musculus Source name: Liver Platform: GPL19057 Series: GSE179050 GSE179053 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5404nnn/GSM5404595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11243803 Sample Accession: GSM5404595 ID: 305404595 4081. Ppara liver rep1 Organism: Mus musculus Source name: Liver Platform: GPL19057 Series: GSE179050 GSE179053 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5404nnn/GSM5404594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11243802 Sample Accession: GSM5404594 ID: 305404594 4082. Cpt2 liver rep2 Organism: Mus musculus Source name: Liver Platform: GPL19057 Series: GSE179050 GSE179053 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5404nnn/GSM5404593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11243801 Sample Accession: GSM5404593 ID: 305404593 4083. Cpt2 liver rep1 Organism: Mus musculus Source name: Liver Platform: GPL19057 Series: GSE179050 GSE179053 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5404nnn/GSM5404592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11243800 Sample Accession: GSM5404592 ID: 305404592 4084. WT liver rep2 Organism: Mus musculus Source name: Liver Platform: GPL19057 Series: GSE179050 GSE179053 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5404nnn/GSM5404591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11243799 Sample Accession: GSM5404591 ID: 305404591 4085. WT liver rep1 Organism: Mus musculus Source name: Liver Platform: GPL19057 Series: GSE179050 GSE179053 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5404nnn/GSM5404590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11243798 Sample Accession: GSM5404590 ID: 305404590 4086. 4F-MYOCD_D14 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242596 Sample Accession: GSM5403587 ID: 305403587 4087. 4F-MYOCD_D10 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242595 Sample Accession: GSM5403586 ID: 305403586 4088. 4F-MYOCD_D7 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242594 Sample Accession: GSM5403585 ID: 305403585 4089. 4F-MYOCD_D3 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242593 Sample Accession: GSM5403584 ID: 305403584 4090. 4F-MYOCD_D0 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242592 Sample Accession: GSM5403583 ID: 305403583 4091. 4F_D14 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242591 Sample Accession: GSM5403582 ID: 305403582 4092. 4F_D10 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242590 Sample Accession: GSM5403581 ID: 305403581 4093. 4F_D7 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242589 Sample Accession: GSM5403580 ID: 305403580 4094. 4F_D3 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242588 Sample Accession: GSM5403579 ID: 305403579 4095. 4F_D0 ATAC-seq Organism: Homo sapiens Source name: urine cell-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242587 Sample Accession: GSM5403578 ID: 305403578 4096. UC ATAC-seq Organism: Homo sapiens Source name: urine cell Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242586 Sample Accession: GSM5403577 ID: 305403577 4097. 5F-MYOCD_D14 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242585 Sample Accession: GSM5403576 ID: 305403576 4098. 5F-MYOCD_D10 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242584 Sample Accession: GSM5403575 ID: 305403575 4099. 5F-MYOCD_D7 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242583 Sample Accession: GSM5403574 ID: 305403574 4100. 5F-MYOCD_D3 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242582 Sample Accession: GSM5403573 ID: 305403573 4101. 5F-MYOCD_D0 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242581 Sample Accession: GSM5403572 ID: 305403572 4102. 5F_D14 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242580 Sample Accession: GSM5403571 ID: 305403571 4103. 5F_D10 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242579 Sample Accession: GSM5403570 ID: 305403570 4104. 5F_D7 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242578 Sample Accession: GSM5403569 ID: 305403569 4105. 5F_D3 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242577 Sample Accession: GSM5403568 ID: 305403568 4106. 5F_D0 ATAC-seq Organism: Homo sapiens Source name: fibroblast-induced cardiomyocyte Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242576 Sample Accession: GSM5403567 ID: 305403567 4107. BJ ATAC-seq Organism: Homo sapiens Source name: fibroblast Platform: GPL24676 Series: GSE179011 GSE179013 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5403nnn/GSM5403566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11242575 Sample Accession: GSM5403566 ID: 305403566 4108. RTT_ATACSeq_Rep3 Organism: Mus musculus Source name: RTT Braf/Pten tumor cells Platform: GPL19057 Series: GSE132443 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5221nnn/GSM5221043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10489309 Sample Accession: GSM5221043 ID: 305221043 4109. RTT_ATACSeq_Rep2 Organism: Mus musculus Source name: RTT Braf/Pten tumor cells Platform: GPL19057 Series: GSE132443 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5221nnn/GSM5221042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10489308 Sample Accession: GSM5221042 ID: 305221042 4110. RTT_ATACSeq_Rep1 Organism: Mus musculus Source name: RTT Braf/Pten tumor cells Platform: GPL19057 Series: GSE132443 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5221nnn/GSM5221041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10489307 Sample Accession: GSM5221041 ID: 305221041 4111. NTT_ATACSeq_Rep3 Organism: Mus musculus Source name: NTT Braf/Pten tumor cells Platform: GPL19057 Series: GSE132443 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5221nnn/GSM5221040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10489306 Sample Accession: GSM5221040 ID: 305221040 4112. NTT_ATACSeq_Rep2 Organism: Mus musculus Source name: NTT Braf/Pten tumor cells Platform: GPL19057 Series: GSE132443 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5221nnn/GSM5221039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10489305 Sample Accession: GSM5221039 ID: 305221039 4113. NTT_ATACSeq_Rep1 Organism: Mus musculus Source name: NTT Braf/Pten tumor cells Platform: GPL19057 Series: GSE132443 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5221nnn/GSM5221038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10489304 Sample Accession: GSM5221038 ID: 305221038 4114. abx04_abx-d30-pDC_A149 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029835 Sample Accession: GSM5065272 ID: 305065272 4115. abx04_abx-d30-mDC_A148 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029834 Sample Accession: GSM5065271 ID: 305065271 4116. abx04_abx-d0-mDC_A139 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029833 Sample Accession: GSM5065270 ID: 305065270 4117. abx04_abx-d0-MC_A137 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029832 Sample Accession: GSM5065269 ID: 305065269 4118. abx04_abx-bl-mDC_A131 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029831 Sample Accession: GSM5065268 ID: 305065268 4119. abx04_abx-bl-MC_A129 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029830 Sample Accession: GSM5065267 ID: 305065267 4120. abx07_abx-d30-mDC_A123 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029829 Sample Accession: GSM5065266 ID: 305065266 4121. abx07_abx-d30-MC_A122 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029828 Sample Accession: GSM5065265 ID: 305065265 4122. abx07_abx-d0-pDC_A117 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029827 Sample Accession: GSM5065264 ID: 305065264 4123. abx07_abx-d0-mDC_A115 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029826 Sample Accession: GSM5065263 ID: 305065263 4124. abx07_abx-d0-MC_A113 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029825 Sample Accession: GSM5065262 ID: 305065262 4125. abx07_abx-bl-mDC_A107 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029824 Sample Accession: GSM5065261 ID: 305065261 4126. abx07_abx-bl-MC_A106 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029823 Sample Accession: GSM5065260 ID: 305065260 4127. abx20_ctrl-d30-pDC_A101 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029822 Sample Accession: GSM5065259 ID: 305065259 4128. abx20_ctrl-d30-mDC_A099 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029821 Sample Accession: GSM5065258 ID: 305065258 4129. abx20_ctrl-d30-MC_A097 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029820 Sample Accession: GSM5065257 ID: 305065257 4130. abx20_ctrl-d0-pDC_A093 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029819 Sample Accession: GSM5065256 ID: 305065256 4131. abx20_ctrl-d0-mDC_A091 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029818 Sample Accession: GSM5065255 ID: 305065255 4132. abx20_ctrl-d0-MC_A089 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029817 Sample Accession: GSM5065254 ID: 305065254 4133. abx26_ctrl-d30-pDC_A085 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029816 Sample Accession: GSM5065253 ID: 305065253 4134. abx26_ctrl-d30-mDC_A083 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029815 Sample Accession: GSM5065252 ID: 305065252 4135. abx26_ctrl-d30-MC_A081 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029814 Sample Accession: GSM5065251 ID: 305065251 4136. abx26_ctrl-d0-pDC_A077 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029813 Sample Accession: GSM5065250 ID: 305065250 4137. abx26_ctrl-d0-mDC_A075 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029812 Sample Accession: GSM5065249 ID: 305065249 4138. abx26_ctrl-d0-MC_A074 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029811 Sample Accession: GSM5065248 ID: 305065248 4139. abx27_ctrl-d30-pDC_A069 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029810 Sample Accession: GSM5065247 ID: 305065247 4140. abx27_ctrl-d30-mDC_A067 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029809 Sample Accession: GSM5065246 ID: 305065246 4141. abx27_ctrl-d30-MC_A065 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029808 Sample Accession: GSM5065245 ID: 305065245 4142. abx27_ctrl-d0-pDC_A061 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029807 Sample Accession: GSM5065244 ID: 305065244 4143. abx27_ctrl-d0-mDC_A059 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029806 Sample Accession: GSM5065243 ID: 305065243 4144. abx27_ctrl-d0-MC_A057 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029805 Sample Accession: GSM5065242 ID: 305065242 4145. abx14_ctrl-d30-pDC_A053 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029804 Sample Accession: GSM5065241 ID: 305065241 4146. abx14_ctrl-d30-mDC_A051 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029803 Sample Accession: GSM5065240 ID: 305065240 4147. abx14_ctrl-d30-MC_A049 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029802 Sample Accession: GSM5065239 ID: 305065239 4148. abx14_ctrl-d0-pDC_A045 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029801 Sample Accession: GSM5065238 ID: 305065238 4149. abx14_ctrl-d0-mDC_A043 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029800 Sample Accession: GSM5065237 ID: 305065237 4150. abx14_ctrl-d0-MC_A041 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029799 Sample Accession: GSM5065236 ID: 305065236 4151. abx10_abx-bl-mDC_A035 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029798 Sample Accession: GSM5065235 ID: 305065235 4152. abx10_abx-bl-MC_A033 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029797 Sample Accession: GSM5065234 ID: 305065234 4153. abx10_abx-d30-pDC_A029 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029796 Sample Accession: GSM5065233 ID: 305065233 4154. abx10_abx-d30-mDC_A027 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029795 Sample Accession: GSM5065232 ID: 305065232 4155. abx10_abx-d30-MC_A025 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029794 Sample Accession: GSM5065231 ID: 305065231 4156. abx10_abx-d0-pDC_A021 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029793 Sample Accession: GSM5065230 ID: 305065230 4157. abx10_abx-d0-mDC_A019 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029792 Sample Accession: GSM5065229 ID: 305065229 4158. abx10_abx-d0-MC_A017 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029791 Sample Accession: GSM5065228 ID: 305065228 4159. abx23_ctrl-d30-pDC_A013 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029790 Sample Accession: GSM5065227 ID: 305065227 4160. abx23_ctrl-d30-mDC_A011 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029789 Sample Accession: GSM5065226 ID: 305065226 4161. abx23_ctrl-d30-MC_A009 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029788 Sample Accession: GSM5065225 ID: 305065225 4162. abx23_ctrl-d0-pDC_A006 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029787 Sample Accession: GSM5065224 ID: 305065224 4163. abx23_ctrl-d0-mDC_A004 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029786 Sample Accession: GSM5065223 ID: 305065223 4164. abx23_ctrl-d0-MC_A002 Organism: Homo sapiens Source name: cryopreserved pbmcs Platform: GPL18573 Series: GSE166180 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10029785 Sample Accession: GSM5065222 ID: 305065222 4165. ATAC-Seq siLBR_3 Organism: Homo sapiens Source name: cultured fetal lung fibroblast Platform: GPL16791 Series: GSE165465 GSE165469 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9933112 Sample Accession: GSM5034266 ID: 305034266 4166. ATAC-Seq siLBR_2 Organism: Homo sapiens Source name: cultured fetal lung fibroblast Platform: GPL16791 Series: GSE165465 GSE165469 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9933111 Sample Accession: GSM5034265 ID: 305034265 4167. ATAC-Seq pre-miR-340-5p_4 Organism: Homo sapiens Source name: cultured fetal lung fibroblast Platform: GPL16791 Series: GSE165465 GSE165469 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9933110 Sample Accession: GSM5034264 ID: 305034264 4168. ATAC-Seq pre-miR-340-5p_3 Organism: Homo sapiens Source name: cultured fetal lung fibroblast Platform: GPL16791 Series: GSE165465 GSE165469 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9933109 Sample Accession: GSM5034263 ID: 305034263 4169. ATAC-Seq IR_2 Organism: Homo sapiens Source name: cultured fetal lung fibroblast Platform: GPL16791 Series: GSE165465 GSE165469 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9933108 Sample Accession: GSM5034262 ID: 305034262 4170. ATAC-Seq IR_1 Organism: Homo sapiens Source name: cultured fetal lung fibroblast Platform: GPL16791 Series: GSE165465 GSE165469 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9933107 Sample Accession: GSM5034261 ID: 305034261 4171. ATAC-Seq miR Control_2 Organism: Homo sapiens Source name: cultured fetal lung fibroblast Platform: GPL16791 Series: GSE165465 GSE165469 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9933106 Sample Accession: GSM5034260 ID: 305034260 4172. ATAC-Seq miR Control_1 Organism: Homo sapiens Source name: cultured fetal lung fibroblast Platform: GPL16791 Series: GSE165465 GSE165469 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5034nnn/GSM5034259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9933105 Sample Accession: GSM5034259 ID: 305034259 4173. Hepa.ChIAPET_H3K4me3.H11.2.DMSO Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5141nnn/GSM5141340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271394 Sample Accession: GSM5141340 ID: 305141340 4174. Hepa.ChIAPET_H3K4me3.H11.2.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5141nnn/GSM5141339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271393 Sample Accession: GSM5141339 ID: 305141339 4175. Hepa.ChIAPET_H3K4me3.H9.2.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5141nnn/GSM5141336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271392 Sample Accession: GSM5141336 ID: 305141336 4176. Hepa.ChIAPET_H3K4me3.H8.2.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5141nnn/GSM5141335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271391 Sample Accession: GSM5141335 ID: 305141335 4177. Hepa.ChIAPET_H3K4me3.H6.2.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5141nnn/GSM5141330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271390 Sample Accession: GSM5141330 ID: 305141330 4178. Hepa.ChIAPET_H3K4me3.H3.2.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5141nnn/GSM5141329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271389 Sample Accession: GSM5141329 ID: 305141329 4179. Adip.ChIPseq_GR.Input Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683854 Sample Accession: GSM4973681 ID: 304973681 4180. Adip.ChIPseq_GR.A8.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683853 Sample Accession: GSM4973680 ID: 304973680 4181. Adip.ChIPseq_GR.A8.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683852 Sample Accession: GSM4973679 ID: 304973679 4182. Adip.ChIPseq_GR.A7.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683851 Sample Accession: GSM4973678 ID: 304973678 4183. Adip.ChIPseq_GR.A7.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683850 Sample Accession: GSM4973677 ID: 304973677 4184. Adip.ChIPseq_GR.A6.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683849 Sample Accession: GSM4973676 ID: 304973676 4185. Adip.ChIPseq_GR.A6.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683848 Sample Accession: GSM4973675 ID: 304973675 4186. Adip.ChIPseq_GR.A5.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683847 Sample Accession: GSM4973674 ID: 304973674 4187. Adip.ChIPseq_GR.A5.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683846 Sample Accession: GSM4973673 ID: 304973673 4188. Adip.ChIPseq_GR.A4.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683845 Sample Accession: GSM4973672 ID: 304973672 4189. Adip.ChIPseq_GR.A4.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683844 Sample Accession: GSM4973671 ID: 304973671 4190. Adip.ChIPseq_GR.A3.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683843 Sample Accession: GSM4973670 ID: 304973670 4191. Adip.ChIPseq_GR.A3.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683842 Sample Accession: GSM4973669 ID: 304973669 4192. Adip.ChIPseq_GR.A2.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683841 Sample Accession: GSM4973668 ID: 304973668 4193. Adip.ChIPseq_GR.A2.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683840 Sample Accession: GSM4973667 ID: 304973667 4194. Adip.ChIPseq_GR.A1.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683839 Sample Accession: GSM4973666 ID: 304973666 4195. Adip.ChIPseq_GR.A1.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL20795 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683838 Sample Accession: GSM4973665 ID: 304973665 4196. Hepa.ChIAPET_H3K4me3.H11.DMSO Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971501/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674375 Sample Accession: GSM4971501 ID: 304971501 4197. Hepa.ChIAPET_H3K4me3.H11.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674374 Sample Accession: GSM4971500 ID: 304971500 4198. Hepa.ChIAPET_H3K4me3.H9.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674373 Sample Accession: GSM4971499 ID: 304971499 4199. Hepa.ChIAPET_H3K4me3.H8.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674372 Sample Accession: GSM4971498 ID: 304971498 4200. Hepa.ChIAPET_H3K4me3.H6.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674371 Sample Accession: GSM4971497 ID: 304971497 4201. Hepa.ChIAPET_H3K4me3.H3.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL20795 Series: GSE163061 FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674370 Sample Accession: GSM4971496 ID: 304971496 4202. Hepa.ChIPseq_GR.H11.Dex24h.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5141nnn/GSM5141326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271388 Sample Accession: GSM5141326 ID: 305141326 4203. Hepa.ChIPseq_GR.H11.Dex24h.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5141nnn/GSM5141323/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271387 Sample Accession: GSM5141323 ID: 305141323 4204. Hepa.ChIPseq_GR.Input Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674321 Sample Accession: GSM4971447 ID: 304971447 4205. Hepa.ChIPseq_GR.H11.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674320 Sample Accession: GSM4971446 ID: 304971446 4206. Hepa.ChIPseq_GR.H11.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674319 Sample Accession: GSM4971445 ID: 304971445 4207. Hepa.ChIPseq_GR.H11.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674318 Sample Accession: GSM4971444 ID: 304971444 4208. Hepa.ChIPseq_GR.H11.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674317 Sample Accession: GSM4971443 ID: 304971443 4209. Hepa.ChIPseq_GR.H10.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674316 Sample Accession: GSM4971442 ID: 304971442 4210. Hepa.ChIPseq_GR.H10.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674315 Sample Accession: GSM4971441 ID: 304971441 4211. Hepa.ChIPseq_GR.H9.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674314 Sample Accession: GSM4971440 ID: 304971440 4212. Hepa.ChIPseq_GR.H9.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674313 Sample Accession: GSM4971439 ID: 304971439 4213. Hepa.ChIPseq_GR.H8.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674311 Sample Accession: GSM4971438 ID: 304971438 4214. Hepa.ChIPseq_GR.H8.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674310 Sample Accession: GSM4971437 ID: 304971437 4215. Hepa.ChIPseq_GR.H7.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674309 Sample Accession: GSM4971436 ID: 304971436 4216. Hepa.ChIPseq_GR.H7.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674308 Sample Accession: GSM4971435 ID: 304971435 4217. Hepa.ChIPseq_GR.H6.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674307 Sample Accession: GSM4971434 ID: 304971434 4218. Hepa.ChIPseq_GR.H6.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674306 Sample Accession: GSM4971433 ID: 304971433 4219. Hepa.ChIPseq_GR.H5.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674305 Sample Accession: GSM4971432 ID: 304971432 4220. Hepa.ChIPseq_GR.H5.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674304 Sample Accession: GSM4971431 ID: 304971431 4221. Hepa.ChIPseq_GR.H4.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674303 Sample Accession: GSM4971430 ID: 304971430 4222. Hepa.ChIPseq_GR.H4.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674302 Sample Accession: GSM4971429 ID: 304971429 4223. Hepa.ChIPseq_GR.H3.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674301 Sample Accession: GSM4971428 ID: 304971428 4224. Hepa.ChIPseq_GR.H3.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674300 Sample Accession: GSM4971427 ID: 304971427 4225. Hepa.ChIPseq_GR.H2.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674299 Sample Accession: GSM4971426 ID: 304971426 4226. Hepa.ChIPseq_GR.H2.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674298 Sample Accession: GSM4971425 ID: 304971425 4227. Hepa.ChIPseq_GR.H1.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674297 Sample Accession: GSM4971424 ID: 304971424 4228. Hepa.ChIPseq_GR.H1.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL11154 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674296 Sample Accession: GSM4971423 ID: 304971423 4229. Hepa.ATACseq.H11.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL18573 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683924 Sample Accession: GSM4973751 ID: 304973751 4230. Hepa.ATACseq.H9.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL18573 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683923 Sample Accession: GSM4973750 ID: 304973750 4231. Hepa.ATACseq.H8.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL18573 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683922 Sample Accession: GSM4973749 ID: 304973749 4232. Hepa.ATACseq.H5.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL18573 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683921 Sample Accession: GSM4973748 ID: 304973748 4233. Hepa.ATACseq.H3.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL18573 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683920 Sample Accession: GSM4973747 ID: 304973747 4234. Hepa.ATACseq.H2.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL18573 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683919 Sample Accession: GSM4973746 ID: 304973746 4235. Hepa.ATACseq.H10.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL18573 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674312 Sample Accession: GSM4971503 ID: 304971503 4236. Hepa.ATACseq.H1.Dex Organism: Homo sapiens Source name: Hepatocyte Platform: GPL18573 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674376 Sample Accession: GSM4971502 ID: 304971502 4237. Hepa.RNAseq.H8.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10271386 Sample Accession: GSM5141321 ID: 305141321 4238. Hepa.RNAseq.H11.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683918 Sample Accession: GSM4973745 ID: 304973745 4239. Hepa.RNAseq.H11.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683917 Sample Accession: GSM4973744 ID: 304973744 4240. Hepa.RNAseq.H11.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683916 Sample Accession: GSM4973743 ID: 304973743 4241. Hepa.RNAseq.H11.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683915 Sample Accession: GSM4973742 ID: 304973742 4242. Hepa.RNAseq.H11.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683914 Sample Accession: GSM4973741 ID: 304973741 4243. Hepa.RNAseq.H11.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683913 Sample Accession: GSM4973740 ID: 304973740 4244. Hepa.RNAseq.H10.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683912 Sample Accession: GSM4973739 ID: 304973739 4245. Hepa.RNAseq.H10.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683911 Sample Accession: GSM4973738 ID: 304973738 4246. Hepa.RNAseq.H10.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683910 Sample Accession: GSM4973737 ID: 304973737 4247. Hepa.RNAseq.H10.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683909 Sample Accession: GSM4973736 ID: 304973736 4248. Hepa.RNAseq.H10.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683908 Sample Accession: GSM4973735 ID: 304973735 4249. Hepa.RNAseq.H10.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683907 Sample Accession: GSM4973734 ID: 304973734 4250. Hepa.RNAseq.H9.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683906 Sample Accession: GSM4973733 ID: 304973733 4251. Hepa.RNAseq.H9.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683905 Sample Accession: GSM4973732 ID: 304973732 4252. Hepa.RNAseq.H9.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683904 Sample Accession: GSM4973731 ID: 304973731 4253. Hepa.RNAseq.H9.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683903 Sample Accession: GSM4973730 ID: 304973730 4254. Hepa.RNAseq.H9.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683902 Sample Accession: GSM4973729 ID: 304973729 4255. Hepa.RNAseq.H9.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683901 Sample Accession: GSM4973728 ID: 304973728 4256. Hepa.RNAseq.H8.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683900 Sample Accession: GSM4973727 ID: 304973727 4257. Hepa.RNAseq.H8.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683899 Sample Accession: GSM4973726 ID: 304973726 4258. Hepa.RNAseq.H8.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683898 Sample Accession: GSM4973725 ID: 304973725 4259. Hepa.RNAseq.H8.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683897 Sample Accession: GSM4973724 ID: 304973724 4260. Hepa.RNAseq.H7.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683896 Sample Accession: GSM4973723 ID: 304973723 4261. Hepa.RNAseq.H7.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683895 Sample Accession: GSM4973722 ID: 304973722 4262. Hepa.RNAseq.H7.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683894 Sample Accession: GSM4973721 ID: 304973721 4263. Hepa.RNAseq.H7.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683893 Sample Accession: GSM4973720 ID: 304973720 4264. Hepa.RNAseq.H7.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683892 Sample Accession: GSM4973719 ID: 304973719 4265. Hepa.RNAseq.H7.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683891 Sample Accession: GSM4973718 ID: 304973718 4266. Hepa.RNAseq.H6.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683890 Sample Accession: GSM4973717 ID: 304973717 4267. Hepa.RNAseq.H6.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683889 Sample Accession: GSM4973716 ID: 304973716 4268. Hepa.RNAseq.H6.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683888 Sample Accession: GSM4973715 ID: 304973715 4269. Hepa.RNAseq.H6.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683887 Sample Accession: GSM4973714 ID: 304973714 4270. Hepa.RNAseq.H6.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683886 Sample Accession: GSM4973713 ID: 304973713 4271. Hepa.RNAseq.H6.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683885 Sample Accession: GSM4973712 ID: 304973712 4272. Hepa.RNAseq.H5.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683884 Sample Accession: GSM4973711 ID: 304973711 4273. Hepa.RNAseq.H5.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683883 Sample Accession: GSM4973710 ID: 304973710 4274. Hepa.RNAseq.H5.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683882 Sample Accession: GSM4973709 ID: 304973709 4275. Hepa.RNAseq.H5.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683881 Sample Accession: GSM4973708 ID: 304973708 4276. Hepa.RNAseq.H5.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683880 Sample Accession: GSM4973707 ID: 304973707 4277. Hepa.RNAseq.H5.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683879 Sample Accession: GSM4973706 ID: 304973706 4278. Hepa.RNAseq.H4.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683878 Sample Accession: GSM4973705 ID: 304973705 4279. Hepa.RNAseq.H4.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683877 Sample Accession: GSM4973704 ID: 304973704 4280. Hepa.RNAseq.H4.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683876 Sample Accession: GSM4973703 ID: 304973703 4281. Hepa.RNAseq.H4.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683875 Sample Accession: GSM4973702 ID: 304973702 4282. Hepa.RNAseq.H4.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683874 Sample Accession: GSM4973701 ID: 304973701 4283. Hepa.RNAseq.H4.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683873 Sample Accession: GSM4973700 ID: 304973700 4284. Hepa.RNAseq.H3.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683872 Sample Accession: GSM4973699 ID: 304973699 4285. Hepa.RNAseq.H3.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683871 Sample Accession: GSM4973698 ID: 304973698 4286. Hepa.RNAseq.H3.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683870 Sample Accession: GSM4973697 ID: 304973697 4287. Hepa.RNAseq.H3.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683869 Sample Accession: GSM4973696 ID: 304973696 4288. Hepa.RNAseq.H3.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683868 Sample Accession: GSM4973695 ID: 304973695 4289. Hepa.RNAseq.H3.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683867 Sample Accession: GSM4973694 ID: 304973694 4290. Hepa.RNAseq.H2.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683866 Sample Accession: GSM4973693 ID: 304973693 4291. Hepa.RNAseq.H2.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683865 Sample Accession: GSM4973692 ID: 304973692 4292. Hepa.RNAseq.H2.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683864 Sample Accession: GSM4973691 ID: 304973691 4293. Hepa.RNAseq.H2.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683863 Sample Accession: GSM4973690 ID: 304973690 4294. Hepa.RNAseq.H2.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683862 Sample Accession: GSM4973689 ID: 304973689 4295. Hepa.RNAseq.H2.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683861 Sample Accession: GSM4973688 ID: 304973688 4296. Hepa.RNAseq.H1.DMSO.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683860 Sample Accession: GSM4973687 ID: 304973687 4297. Hepa.RNAseq.H1.DMSO.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683859 Sample Accession: GSM4973686 ID: 304973686 4298. Hepa.RNAseq.H1.DMSO.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683858 Sample Accession: GSM4973685 ID: 304973685 4299. Hepa.RNAseq.H1.Dex.3 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683857 Sample Accession: GSM4973684 ID: 304973684 4300. Hepa.RNAseq.H1.Dex.2 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683856 Sample Accession: GSM4973683 ID: 304973683 4301. Hepa.RNAseq.H1.Dex.1 Organism: Homo sapiens Source name: Hepatocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9683855 Sample Accession: GSM4973682 ID: 304973682 4302. Adip.RNAseq.A8.DMSO.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674369 Sample Accession: GSM4971495 ID: 304971495 4303. Adip.RNAseq.A8.DMSO.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674368 Sample Accession: GSM4971494 ID: 304971494 4304. Adip.RNAseq.A8.DMSO.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674367 Sample Accession: GSM4971493 ID: 304971493 4305. Adip.RNAseq.A8.Dex.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674366 Sample Accession: GSM4971492 ID: 304971492 4306. Adip.RNAseq.A8.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674365 Sample Accession: GSM4971491 ID: 304971491 4307. Adip.RNAseq.A8.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674364 Sample Accession: GSM4971490 ID: 304971490 4308. Adip.RNAseq.A7.DMSO.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674363 Sample Accession: GSM4971489 ID: 304971489 4309. Adip.RNAseq.A7.DMSO.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674362 Sample Accession: GSM4971488 ID: 304971488 4310. Adip.RNAseq.A7.DMSO.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674361 Sample Accession: GSM4971487 ID: 304971487 4311. Adip.RNAseq.A7.Dex.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674360 Sample Accession: GSM4971486 ID: 304971486 4312. Adip.RNAseq.A7.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674359 Sample Accession: GSM4971485 ID: 304971485 4313. Adip.RNAseq.A7.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674358 Sample Accession: GSM4971484 ID: 304971484 4314. Adip.RNAseq.A6.DMSO.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674357 Sample Accession: GSM4971483 ID: 304971483 4315. Adip.RNAseq.A6.DMSO.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674356 Sample Accession: GSM4971482 ID: 304971482 4316. Adip.RNAseq.A6.DMSO.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674355 Sample Accession: GSM4971481 ID: 304971481 4317. Adip.RNAseq.A6.Dex.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674354 Sample Accession: GSM4971480 ID: 304971480 4318. Adip.RNAseq.A6.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674353 Sample Accession: GSM4971479 ID: 304971479 4319. Adip.RNAseq.A6.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674352 Sample Accession: GSM4971478 ID: 304971478 4320. Adip.RNAseq.A5.DMSO.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674351 Sample Accession: GSM4971477 ID: 304971477 4321. Adip.RNAseq.A5.DMSO.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674350 Sample Accession: GSM4971476 ID: 304971476 4322. Adip.RNAseq.A5.DMSO.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674349 Sample Accession: GSM4971475 ID: 304971475 4323. Adip.RNAseq.A5.Dex.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674348 Sample Accession: GSM4971474 ID: 304971474 4324. Adip.RNAseq.A5.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674347 Sample Accession: GSM4971473 ID: 304971473 4325. Adip.RNAseq.A5.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674346 Sample Accession: GSM4971472 ID: 304971472 4326. Adip.RNAseq.A4.DMSO.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674345 Sample Accession: GSM4971471 ID: 304971471 4327. Adip.RNAseq.A4.DMSO.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674344 Sample Accession: GSM4971470 ID: 304971470 4328. Adip.RNAseq.A4.DMSO.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674343 Sample Accession: GSM4971469 ID: 304971469 4329. Adip.RNAseq.A4.Dex.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674342 Sample Accession: GSM4971468 ID: 304971468 4330. Adip.RNAseq.A4.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674341 Sample Accession: GSM4971467 ID: 304971467 4331. Adip.RNAseq.A4.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674340 Sample Accession: GSM4971466 ID: 304971466 4332. Adip.RNAseq.A3.DMSO.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674339 Sample Accession: GSM4971465 ID: 304971465 4333. Adip.RNAseq.A3.DMSO.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674338 Sample Accession: GSM4971464 ID: 304971464 4334. Adip.RNAseq.A3.DMSO.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674337 Sample Accession: GSM4971463 ID: 304971463 4335. Adip.RNAseq.A3.Dex.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674336 Sample Accession: GSM4971462 ID: 304971462 4336. Adip.RNAseq.A3.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674335 Sample Accession: GSM4971461 ID: 304971461 4337. Adip.RNAseq.A3.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674334 Sample Accession: GSM4971460 ID: 304971460 4338. Adip.RNAseq.A2.DMSO.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674333 Sample Accession: GSM4971459 ID: 304971459 4339. Adip.RNAseq.A2.DMSO.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674332 Sample Accession: GSM4971458 ID: 304971458 4340. Adip.RNAseq.A2.DMSO.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674331 Sample Accession: GSM4971457 ID: 304971457 4341. Adip.RNAseq.A2.Dex.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674330 Sample Accession: GSM4971456 ID: 304971456 4342. Adip.RNAseq.A2.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674329 Sample Accession: GSM4971455 ID: 304971455 4343. Adip.RNAseq.A2.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674328 Sample Accession: GSM4971454 ID: 304971454 4344. Adip.RNAseq.A1.DMSO.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674327 Sample Accession: GSM4971453 ID: 304971453 4345. Adip.RNAseq.A1.DMSO.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674326 Sample Accession: GSM4971452 ID: 304971452 4346. Adip.RNAseq.A1.DMSO.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674325 Sample Accession: GSM4971451 ID: 304971451 4347. Adip.RNAseq.A1.Dex.3 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674324 Sample Accession: GSM4971450 ID: 304971450 4348. Adip.RNAseq.A1.Dex.2 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674323 Sample Accession: GSM4971449 ID: 304971449 4349. Adip.RNAseq.A1.Dex.1 Organism: Homo sapiens Source name: Adipocyte Platform: GPL24676 Series: GSE163061 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674322 Sample Accession: GSM4971448 ID: 304971448 4350. ATAC-Seq Wdr5 and p53 double knockout-rep-2 Organism: Mus musculus Source name: embryoid bodies Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188232 Sample Accession: GSM5393722 ID: 305393722 4351. ATAC-Seq Wdr5 and p53 double knockout-rep-1 Organism: Mus musculus Source name: embryoid bodies Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188231 Sample Accession: GSM5393721 ID: 305393721 4352. ATAC-Seq WT, EB4-rep-2 Organism: Mus musculus Source name: embryoid bodies Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188230 Sample Accession: GSM5393720 ID: 305393720 4353. ATAC-Seq WT, EB4-rep-1 Organism: Mus musculus Source name: embryoid bodies Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188229 Sample Accession: GSM5393719 ID: 305393719 4354. ATAC-Seq DKOWT-rep2 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188228 Sample Accession: GSM5393718 ID: 305393718 4355. ATAC-Seq DKOWT-rep1 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188227 Sample Accession: GSM5393717 ID: 305393717 4356. ATAC-Seq p53KOH9-rep2 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188226 Sample Accession: GSM5393716 ID: 305393716 4357. ATAC-Seq p53KOH9-rep1 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188225 Sample Accession: GSM5393715 ID: 305393715 4358. ATAC-Seq p53KOC9-rep2 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188224 Sample Accession: GSM5393714 ID: 305393714 4359. ATAC-Seq p53KOC9-rep1 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188223 Sample Accession: GSM5393713 ID: 305393713 4360. ATAC-Seq WT-rep2 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188222 Sample Accession: GSM5393712 ID: 305393712 4361. ATAC-Seq WT-rep1 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188221 Sample Accession: GSM5393711 ID: 305393711 4362. ATAC-Seq DKOS91KY191F-rep2 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188220 Sample Accession: GSM5393710 ID: 305393710 4363. ATAC-Seq DKOS91KY191F-rep1 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188219 Sample Accession: GSM5393709 ID: 305393709 4364. ATAC-Seq DKOEV-rep2 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188218 Sample Accession: GSM5393708 ID: 305393708 4365. ATAC-Seq DKOEV-rep1 Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE178551 GSE178556 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5393nnn/GSM5393707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11188217 Sample Accession: GSM5393707 ID: 305393707 4366. MR42D_Washout_Veh_2 [ATAC-seq] Organism: Homo sapiens Source name: MR42D_Washout_Veh Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041954 Sample Accession: GSM4447584 ID: 304447584 4367. MR42D_Washout_Veh_1 [ATAC-seq] Organism: Homo sapiens Source name: MR42D_Washout_Veh Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041953 Sample Accession: GSM4447583 ID: 304447583 4368. MR42D_Washout_MDV_2 [ATAC-seq] Organism: Homo sapiens Source name: MR42D_Washout_MDV Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041952 Sample Accession: GSM4447582 ID: 304447582 4369. MR42D_Washout_MDV_1 [ATAC-seq] Organism: Homo sapiens Source name: MR42D_Washout_MDV Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041951 Sample Accession: GSM4447581 ID: 304447581 4370. MR42D_Maintenance_8MDV_2 [ATAC-seq] Organism: Homo sapiens Source name: MR42D_Maintenance_MDV Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041950 Sample Accession: GSM4447580 ID: 304447580 4371. MR42D_Maintenance_8MDV_1 [ATAC-seq] Organism: Homo sapiens Source name: MR42D_Maintenance_MDV Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041949 Sample Accession: GSM4447579 ID: 304447579 4372. V16D_MDV_3 [ATAC-seq] Organism: Homo sapiens Source name: V16D_MDV Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041948 Sample Accession: GSM4447578 ID: 304447578 4373. V16D_MDV_2 [ATAC-seq] Organism: Homo sapiens Source name: V16D_MDV Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041947 Sample Accession: GSM4447577 ID: 304447577 4374. V16D_MDV_1 [ATAC-seq] Organism: Homo sapiens Source name: V16D_MDV Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041946 Sample Accession: GSM4447576 ID: 304447576 4375. V16D_Veh_3 [ATAC-seq] Organism: Homo sapiens Source name: V16D_Veh Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041945 Sample Accession: GSM4447575 ID: 304447575 4376. V16D_Veh_2 [ATAC-seq] Organism: Homo sapiens Source name: V16D_Veh Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041944 Sample Accession: GSM4447574 ID: 304447574 4377. V16D_Veh_1 [ATAC-seq] Organism: Homo sapiens Source name: V16D_Veh Platform: GPL16791 Series: GSE147874 GSE147877 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8041943 Sample Accession: GSM4447573 ID: 304447573 4378. liver, 517 ko - TA-10 (ATAC-seq) Organism: Mus musculus Source name: liver nuclei Platform: GPL21103 Series: GSE162929 GSE162930 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9660868 Sample Accession: GSM4966395 ID: 304966395 4379. liver, 293 ko - TA-9 (ATAC-seq) Organism: Mus musculus Source name: liver nuclei Platform: GPL21103 Series: GSE162929 GSE162930 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9660867 Sample Accession: GSM4966394 ID: 304966394 4380. liver, 490 cre - TA-5 (ATAC-seq) Organism: Mus musculus Source name: liver nuclei Platform: GPL21103 Series: GSE162929 GSE162930 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9660866 Sample Accession: GSM4966393 ID: 304966393 4381. liver, 207 cre - TA-3 (ATAC-seq) Organism: Mus musculus Source name: liver nuclei Platform: GPL21103 Series: GSE162929 GSE162930 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9660865 Sample Accession: GSM4966392 ID: 304966392 4382. liver, 245 ko - TA-7 (ATAC-seq) Organism: Mus musculus Source name: liver nuclei Platform: GPL21103 Series: GSE162929 GSE162930 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9660864 Sample Accession: GSM4966391 ID: 304966391 4383. liver, 176 ko - TA-6 (ATAC-seq) Organism: Mus musculus Source name: liver nuclei Platform: GPL21103 Series: GSE162929 GSE162930 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9660863 Sample Accession: GSM4966390 ID: 304966390 4384. liver, 178 cre - TA-2 (ATAC-seq) Organism: Mus musculus Source name: liver nuclei Platform: GPL21103 Series: GSE162929 GSE162930 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9660862 Sample Accession: GSM4966389 ID: 304966389 4385. liver, 164 cre - TA-1 (ATAC-seq) Organism: Mus musculus Source name: liver nuclei Platform: GPL21103 Series: GSE162929 GSE162930 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9660861 Sample Accession: GSM4966388 ID: 304966388 4386. LNCAP sgNC rep2 [ATAC-Seq] Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL24676 Series: GSE178329 GSE178330 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5387nnn/GSM5387843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11169329 Sample Accession: GSM5387843 ID: 305387843 4387. LNCAP sgNC rep1 [ATAC-Seq] Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL24676 Series: GSE178329 GSE178330 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5387nnn/GSM5387842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11169328 Sample Accession: GSM5387842 ID: 305387842 4388. LNCAP sgKIF4A rep2 [ATAC-Seq] Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL24676 Series: GSE178329 GSE178330 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5387nnn/GSM5387841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11169327 Sample Accession: GSM5387841 ID: 305387841 4389. LNCAP sgKIF4A rep1 [ATAC-Seq] Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL24676 Series: GSE178329 GSE178330 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5387nnn/GSM5387840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11169326 Sample Accession: GSM5387840 ID: 305387840 4390. C42B sgNC rep2 [ATAC-Seq] Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL24676 Series: GSE178329 GSE178330 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5387nnn/GSM5387839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11169325 Sample Accession: GSM5387839 ID: 305387839 4391. C42B sgNC rep1 [ATAC-Seq] Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL24676 Series: GSE178329 GSE178330 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5387nnn/GSM5387838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11169324 Sample Accession: GSM5387838 ID: 305387838 4392. C42B sgKIF4A rep2 [ATAC-Seq] Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL24676 Series: GSE178329 GSE178330 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5387nnn/GSM5387837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11169323 Sample Accession: GSM5387837 ID: 305387837 4393. C42B sgKIF4A rep1 [ATAC-Seq] Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL24676 Series: GSE178329 GSE178330 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5387nnn/GSM5387836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX11169322 Sample Accession: GSM5387836 ID: 305387836 4394. K562_ENL KO ATAC-seq rep2 Organism: Homo sapiens Source name: K562_ENL KO ATAC-seq Platform: GPL24676 Series: GSE161367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498694 Sample Accession: GSM4905455 ID: 304905455 4395. K562_ENL KO ATAC-seq rep1 Organism: Homo sapiens Source name: K562_ENL KO ATAC-seq Platform: GPL24676 Series: GSE161367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498693 Sample Accession: GSM4905454 ID: 304905454 4396. K562_DOT1L KO ATAC-seq rep2 Organism: Homo sapiens Source name: K562_DOT1L KO ATAC-seq Platform: GPL24676 Series: GSE161367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498692 Sample Accession: GSM4905453 ID: 304905453 4397. K562_DOT1L KO ATAC-seq rep1 Organism: Homo sapiens Source name: K562_DOT1L KO ATAC-seq Platform: GPL24676 Series: GSE161367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498691 Sample Accession: GSM4905452 ID: 304905452 4398. K562_control ATAC-seq rep2 Organism: Homo sapiens Source name: K562_control ATAC-seq Platform: GPL24676 Series: GSE161367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498690 Sample Accession: GSM4905451 ID: 304905451 4399. K562_control ATAC-seq rep1 Organism: Homo sapiens Source name: K562_control ATAC-seq Platform: GPL24676 Series: GSE161367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4905nnn/GSM4905450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9498689 Sample Accession: GSM4905450 ID: 304905450 4400. ATAC-seq acetabulum E67 Organism: Homo sapiens Source name: Acetabulum E67 Platform: GPL18573 Series: GSE153260 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4637nnn/GSM4637150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8617502 Sample Accession: GSM4637150 ID: 304637150 4401. ATAC-seq distal tibia E67 Organism: Homo sapiens Source name: Distal tibial growth plates E67 Platform: GPL18573 Series: GSE153260 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4637nnn/GSM4637149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8617501 Sample Accession: GSM4637149 ID: 304637149 4402. ATAC-seq proximal tibia E67 Organism: Homo sapiens Source name: Proximal tibial growth plates E67 Platform: GPL18573 Series: GSE153260 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4637nnn/GSM4637148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8617500 Sample Accession: GSM4637148 ID: 304637148 4403. ATAC-seq distal femur E67 Organism: Homo sapiens Source name: Distal femoral growth plates E67 Platform: GPL18573 Series: GSE153260 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4637nnn/GSM4637147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8617499 Sample Accession: GSM4637147 ID: 304637147 4404. ATAC-seq proximal femur E67 Organism: Homo sapiens Source name: Proximal femoral growth plates E67 Platform: GPL18573 Series: GSE153260 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4637nnn/GSM4637146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8617498 Sample Accession: GSM4637146 ID: 304637146 4405. ATAC_seq_rep1 Organism: Mus musculus Source name: Bone marrow derived eosinophils (bmEos) Platform: GPL21103 Series: GSE144951 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4301nnn/GSM4301385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7692794 Sample Accession: GSM4301385 ID: 304301385 4406. ATAC-Seq A2780cis cisplatin Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5261nnn/GSM5261790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665290 Sample Accession: GSM5261790 ID: 305261790 4407. ATAC-Seq A2780 cisplatin Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5261nnn/GSM5261789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665289 Sample Accession: GSM5261789 ID: 305261789 4408. ATAC-Seq A2780cis control Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5261nnn/GSM5261788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665288 Sample Accession: GSM5261788 ID: 305261788 4409. ATAC-Seq A2780 control Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5261nnn/GSM5261787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665287 Sample Accession: GSM5261787 ID: 305261787 4410. RNA-Seq A2780cis cisplatin rep3 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665286 Sample Accession: GSM5261786 ID: 305261786 4411. RNA-Seq A2780cis cisplatin rep2 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665285 Sample Accession: GSM5261785 ID: 305261785 4412. RNA-Seq A2780cis cisplatin rep1 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665284 Sample Accession: GSM5261784 ID: 305261784 4413. RNA-Seq A2780 cisplatin rep3 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665283 Sample Accession: GSM5261783 ID: 305261783 4414. RNA-Seq A2780 cisplatin rep2 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665282 Sample Accession: GSM5261782 ID: 305261782 4415. RNA-Seq A2780 cisplatin rep1 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665281 Sample Accession: GSM5261781 ID: 305261781 4416. RNA-Seq A2780cis control rep3 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665280 Sample Accession: GSM5261780 ID: 305261780 4417. RNA-Seq A2780cis control rep2 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665279 Sample Accession: GSM5261779 ID: 305261779 4418. RNA-Seq A2780cis control rep1 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665278 Sample Accession: GSM5261778 ID: 305261778 4419. RNA-Seq A2780 control rep3 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665277 Sample Accession: GSM5261777 ID: 305261777 4420. RNA-Seq A2780 control rep2 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665276 Sample Accession: GSM5261776 ID: 305261776 4421. RNA-Seq A2780 control rep1 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL18573 Series: GSE173201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665275 Sample Accession: GSM5261775 ID: 305261775 4422. mK4 Runx1KO ATAC-seq_rep3 Organism: Mus musculus Source name: mK4 Runx1KO cells Platform: GPL21103 Series: GSE158093 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4791nnn/GSM4791997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137646 Sample Accession: GSM4791997 ID: 304791997 4423. mK4 Runx1KO ATAC-seq_rep2 Organism: Mus musculus Source name: mK4 Runx1KO cells Platform: GPL21103 Series: GSE158093 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4791nnn/GSM4791996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137645 Sample Accession: GSM4791996 ID: 304791996 4424. mK4 Runx1KO ATAC-seq_rep1 Organism: Mus musculus Source name: mK4 Runx1KO cells Platform: GPL21103 Series: GSE158093 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4791nnn/GSM4791995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137644 Sample Accession: GSM4791995 ID: 304791995 4425. mK4 control ATAC-seq_rep3 Organism: Mus musculus Source name: mK4 cells Platform: GPL21103 Series: GSE158093 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4791nnn/GSM4791994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137643 Sample Accession: GSM4791994 ID: 304791994 4426. mK4 control ATAC-seq_rep2 Organism: Mus musculus Source name: mK4 cells Platform: GPL21103 Series: GSE158093 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4791nnn/GSM4791993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137642 Sample Accession: GSM4791993 ID: 304791993 4427. mK4 control ATAC-seq_rep1 Organism: Mus musculus Source name: mK4 cells Platform: GPL21103 Series: GSE158093 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4791nnn/GSM4791992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137641 Sample Accession: GSM4791992 ID: 304791992 4428. XR-Seq A2780cis Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL16791 Series: GSE173201 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5261nnn/GSM5261774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665274 Sample Accession: GSM5261774 ID: 305261774 4429. XR-Seq A2780 Organism: Homo sapiens Source name: ovarian carcinoma Platform: GPL16791 Series: GSE173201 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5261nnn/GSM5261773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10665273 Sample Accession: GSM5261773 ID: 305261773 4430. L428-shNTC_rep2 (ATAC-seq) Organism: Homo sapiens Source name: L428 cell line Platform: GPL24676 Series: GSE158239 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9152783 Sample Accession: GSM4795759 ID: 304795759 4431. L428-shNTC_rep1 (ATAC-seq) Organism: Homo sapiens Source name: L428 cell line Platform: GPL24676 Series: GSE158239 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9152782 Sample Accession: GSM4795758 ID: 304795758 4432. L428-shH2A.B-rep2 (ATAC-seq) Organism: Homo sapiens Source name: L428 cell line Platform: GPL24676 Series: GSE158239 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9152781 Sample Accession: GSM4795757 ID: 304795757 4433. L428-shH2A.B-rep1 (ATAC-seq) Organism: Homo sapiens Source name: L428 cell line Platform: GPL24676 Series: GSE158239 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9152780 Sample Accession: GSM4795756 ID: 304795756 4434. L1236-shNTC_rep2 (ATAC-seq) Organism: Homo sapiens Source name: L1236 cell line Platform: GPL24676 Series: GSE158239 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9152779 Sample Accession: GSM4795755 ID: 304795755 4435. L1236-shNTC_rep1 (ATAC-seq) Organism: Homo sapiens Source name: L1236 cell line Platform: GPL24676 Series: GSE158239 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9152778 Sample Accession: GSM4795754 ID: 304795754 4436. L1236-shH2A.B_rep2 (ATAC-seq) Organism: Homo sapiens Source name: L1236 cell line Platform: GPL24676 Series: GSE158239 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9152777 Sample Accession: GSM4795753 ID: 304795753 4437. L1236-shH2A.B_rep1 (ATAC-seq) Organism: Homo sapiens Source name: L1236 cell line Platform: GPL24676 Series: GSE158239 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9152776 Sample Accession: GSM4795752 ID: 304795752 4438. m1PVneg_cSNAIL_rep3 Organism: Mus musculus Source name: m1PVneg_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519551 Sample Accession: GSM5226935 ID: 305226935 4439. m1PVneg_cSNAIL_rep2 Organism: Mus musculus Source name: m1PVneg_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519550 Sample Accession: GSM5226934 ID: 305226934 4440. m1PVneg_cSNAIL_rep1 Organism: Mus musculus Source name: m1PVneg_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519549 Sample Accession: GSM5226933 ID: 305226933 4441. ctxPVneg_cSNAIL_rep3 Organism: Mus musculus Source name: ctxPVneg_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519548 Sample Accession: GSM5226932 ID: 305226932 4442. ctxPVneg_cSNAIL_rep2 Organism: Mus musculus Source name: ctxPVneg_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519547 Sample Accession: GSM5226931 ID: 305226931 4443. ctxPVneg_cSNAIL_rep1 Organism: Mus musculus Source name: ctxPVneg_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519546 Sample Accession: GSM5226930 ID: 305226930 4444. ctxPV_cSNAIL_rep3 Organism: Mus musculus Source name: ctxPV_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519545 Sample Accession: GSM5226929 ID: 305226929 4445. ctxPV_cSNAIL_rep2 Organism: Mus musculus Source name: ctxPV_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519544 Sample Accession: GSM5226928 ID: 305226928 4446. ctxPV_cSNAIL_rep1 Organism: Mus musculus Source name: ctxPV_cSNAIL Platform: GPL19057 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519543 Sample Accession: GSM5226927 ID: 305226927 4447. ATAC-seq_TAF-KO pancreas 5 week Organism: Mus musculus Source name: ATAC-seq fragmented chromatin Platform: GPL21103 Series: GSE151363 GSE151366 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4576nnn/GSM4576253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8417157 Sample Accession: GSM4576253 ID: 304576253 4448. ATAC-seq_TAF-KO pancreas 1 week Organism: Mus musculus Source name: ATAC-seq fragmented chromatin Platform: GPL21103 Series: GSE151363 GSE151366 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4576nnn/GSM4576252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8417156 Sample Accession: GSM4576252 ID: 304576252 4449. ATAC-seq_Wild type pancreas Organism: Mus musculus Source name: ATAC-seq fragmented chromatin Platform: GPL21103 Series: GSE151363 GSE151366 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4576nnn/GSM4576251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8417155 Sample Accession: GSM4576251 ID: 304576251 4450. WT.Neu_ATAC-seq_rep2 Organism: Mus musculus Source name: Neutrophils Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874711 Sample Accession: GSM4399723 ID: 304399723 4451. WT.Neu_ATAC-seq_rep1 Organism: Mus musculus Source name: Neutrophils Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874710 Sample Accession: GSM4399722 ID: 304399722 4452. DM.HSPC_ATAC-seq_rep2 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells (HSPC) Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874709 Sample Accession: GSM4399721 ID: 304399721 4453. DM.HSPC_ATAC-seq_rep1 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells (HSPC) Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874708 Sample Accession: GSM4399720 ID: 304399720 4454. Flt3-ITD.HSPC_ATAC-seq_rep2 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells (HSPC) Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874707 Sample Accession: GSM4399719 ID: 304399719 4455. Flt3-ITD.HSPC_ATAC-seq_rep1 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells (HSPC) Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874706 Sample Accession: GSM4399718 ID: 304399718 4456. Npm1c.HSPC_ATAC-seq_rep2 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells (HSPC) Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874705 Sample Accession: GSM4399717 ID: 304399717 4457. Npm1c.HSPC_ATAC-seq_rep1 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells (HSPC) Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874704 Sample Accession: GSM4399716 ID: 304399716 4458. WT.HSPC_ATAC-seq_rep2 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells (HSPC) Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874703 Sample Accession: GSM4399715 ID: 304399715 4459. WT.HSPC_ATAC-seq_rep1 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells (HSPC) Platform: GPL21103 Series: GSE146616 GSE146669 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4399nnn/GSM4399714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7874702 Sample Accession: GSM4399714 ID: 304399714 4460. HDAC5kd_ortho_3 [ATAC-Seq] Organism: Homo sapiens Source name: orthochromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466026 Sample Accession: GSM4589713 ID: 304589713 4461. HDAC5kd_ortho_2 [ATAC-Seq] Organism: Homo sapiens Source name: orthochromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466025 Sample Accession: GSM4589712 ID: 304589712 4462. HDAC5kd_ortho_1 [ATAC-Seq] Organism: Homo sapiens Source name: orthochromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466024 Sample Accession: GSM4589711 ID: 304589711 4463. HDAC5kd_poly_3 [ATAC-Seq] Organism: Homo sapiens Source name: polychromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466023 Sample Accession: GSM4589710 ID: 304589710 4464. HDAC5kd_poly_2 [ATAC-Seq] Organism: Homo sapiens Source name: polychromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466022 Sample Accession: GSM4589709 ID: 304589709 4465. HDAC5kd_poly_1 [ATAC-Seq] Organism: Homo sapiens Source name: polychromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466021 Sample Accession: GSM4589708 ID: 304589708 4466. PB_luci_ortho_3 [ATAC-Seq] Organism: Homo sapiens Source name: orthochromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466020 Sample Accession: GSM4589707 ID: 304589707 4467. PB_luci_ortho_2 [ATAC-Seq] Organism: Homo sapiens Source name: orthochromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466019 Sample Accession: GSM4589706 ID: 304589706 4468. PB_luci_ortho_1 [ATAC-Seq] Organism: Homo sapiens Source name: orthochromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466018 Sample Accession: GSM4589705 ID: 304589705 4469. PB_luci_poly_3 [ATAC-Seq] Organism: Homo sapiens Source name: polychromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589704/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466017 Sample Accession: GSM4589704 ID: 304589704 4470. PB_luci_poly_2 [ATAC-Seq] Organism: Homo sapiens Source name: polychromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466016 Sample Accession: GSM4589703 ID: 304589703 4471. PB_luci_poly_1 [ATAC-Seq] Organism: Homo sapiens Source name: polychromatic erythroblasts Platform: GPL20301 Series: GSE151743 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4589nnn/GSM4589702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8466015 Sample Accession: GSM4589702 ID: 304589702 4472. gpePV_SC2SNAIL_rep3 Organism: Mus musculus Source name: gpePV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519586 Sample Accession: GSM5226970 ID: 305226970 4473. gpePV_SC2SNAIL_rep2 Organism: Mus musculus Source name: gpePV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226969/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519585 Sample Accession: GSM5226969 ID: 305226969 4474. gpePV_SC2SNAIL_rep1 Organism: Mus musculus Source name: gpePV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519584 Sample Accession: GSM5226968 ID: 305226968 4475. strPV_SC2SNAIL_rep3 Organism: Mus musculus Source name: strPV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519583 Sample Accession: GSM5226967 ID: 305226967 4476. strPV_SC2SNAIL_rep2 Organism: Mus musculus Source name: strPV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519582 Sample Accession: GSM5226966 ID: 305226966 4477. strPV_SC2SNAIL_rep1 Organism: Mus musculus Source name: strPV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519581 Sample Accession: GSM5226965 ID: 305226965 4478. ctxPV_SC2SNAIL_rep3 Organism: Mus musculus Source name: ctxPV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519580 Sample Accession: GSM5226964 ID: 305226964 4479. ctxPV_SC2SNAIL_rep2 Organism: Mus musculus Source name: ctxPV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519579 Sample Accession: GSM5226963 ID: 305226963 4480. ctxPV_SC2SNAIL_rep1 Organism: Mus musculus Source name: ctxPV_SC2SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519578 Sample Accession: GSM5226962 ID: 305226962 4481. gpePV_SC1SNAIL_rep3 Organism: Mus musculus Source name: gpePV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519577 Sample Accession: GSM5226961 ID: 305226961 4482. gpePV_SC1SNAIL_rep2 Organism: Mus musculus Source name: gpePV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519576 Sample Accession: GSM5226960 ID: 305226960 4483. gpePV_SC1SNAIL_rep1 Organism: Mus musculus Source name: gpePV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519575 Sample Accession: GSM5226959 ID: 305226959 4484. strPV_SC1SNAIL_rep3 Organism: Mus musculus Source name: strPV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519574 Sample Accession: GSM5226958 ID: 305226958 4485. strPV_SC1SNAIL_rep2 Organism: Mus musculus Source name: strPV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519573 Sample Accession: GSM5226957 ID: 305226957 4486. strPV_SC1SNAIL_rep1 Organism: Mus musculus Source name: strPV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519572 Sample Accession: GSM5226956 ID: 305226956 4487. ctxPV_SC1SNAIL_rep3 Organism: Mus musculus Source name: ctxPV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519571 Sample Accession: GSM5226955 ID: 305226955 4488. ctxPV_SC1SNAIL_rep2 Organism: Mus musculus Source name: ctxPV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519570 Sample Accession: GSM5226954 ID: 305226954 4489. ctxPV_SC1SNAIL_rep1 Organism: Mus musculus Source name: ctxPV_SC1SNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519569 Sample Accession: GSM5226953 ID: 305226953 4490. gpeGFPneg_Ef1aSNAIL_rep2 Organism: Mus musculus Source name: gpeGFPneg_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519568 Sample Accession: GSM5226952 ID: 305226952 4491. gpeGFPneg_Ef1aSNAIL_rep1 Organism: Mus musculus Source name: gpeGFPneg_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519567 Sample Accession: GSM5226951 ID: 305226951 4492. gpeGFP_Ef1aSNAIL_rep2 Organism: Mus musculus Source name: gpeGFP_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519566 Sample Accession: GSM5226950 ID: 305226950 4493. gpeGFP_Ef1aSNAIL_rep1 Organism: Mus musculus Source name: gpeGFP_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519565 Sample Accession: GSM5226949 ID: 305226949 4494. strGFPneg_Ef1aSNAIL_rep2 Organism: Mus musculus Source name: strGFPneg_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226948/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519564 Sample Accession: GSM5226948 ID: 305226948 4495. strGFPneg_Ef1aSNAIL_rep1 Organism: Mus musculus Source name: strGFPneg_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519563 Sample Accession: GSM5226947 ID: 305226947 4496. strGFP_Ef1aSNAIL_rep2 Organism: Mus musculus Source name: strGFP_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519562 Sample Accession: GSM5226946 ID: 305226946 4497. strGFP_Ef1aSNAIL_rep1 Organism: Mus musculus Source name: strGFP_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519561 Sample Accession: GSM5226945 ID: 305226945 4498. ctxGFPneg_Ef1aSNAIL_rep2 Organism: Mus musculus Source name: ctxGFPneg_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519560 Sample Accession: GSM5226944 ID: 305226944 4499. ctxGFPneg_Ef1aSNAIL_rep1 Organism: Mus musculus Source name: ctxGFPneg_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519559 Sample Accession: GSM5226943 ID: 305226943 4500. ctxGFP_Ef1aSNAIL_rep2 Organism: Mus musculus Source name: ctxGFP_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519558 Sample Accession: GSM5226942 ID: 305226942 4501. ctxGFP_Ef1aSNAIL_rep1 Organism: Mus musculus Source name: ctxGFP_Ef1aSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519557 Sample Accession: GSM5226941 ID: 305226941 4502. gpePVneg_cSNAIL_rep1 Organism: Mus musculus Source name: gpePVneg_cSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519556 Sample Accession: GSM5226940 ID: 305226940 4503. strPVneg_cSNAIL_rep2 Organism: Mus musculus Source name: strPVneg_cSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519555 Sample Accession: GSM5226939 ID: 305226939 4504. strPVneg_cSNAIL_rep1 Organism: Mus musculus Source name: strPVneg_cSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519554 Sample Accession: GSM5226938 ID: 305226938 4505. ctxPVneg_cSNAIL_rep5 Organism: Mus musculus Source name: ctxPVneg_cSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519553 Sample Accession: GSM5226937 ID: 305226937 4506. ctxPVneg_cSNAIL_rep4 Organism: Mus musculus Source name: ctxPVneg_cSNAIL Platform: GPL24247 Series: GSE171549 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5226nnn/GSM5226936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10519552 Sample Accession: GSM5226936 ID: 305226936 4507. PLAC_seq_230238_H3K4me3_rep2 Organism: Mus musculus Source name: 230-238 murine Progenitor B celline Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651683 Sample Accession: GSM4964248 ID: 304964248 4508. PLAC_seq_230238_H3K4me3_rep1 Organism: Mus musculus Source name: 230-238 murine Progenitor B celline Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651682 Sample Accession: GSM4964247 ID: 304964247 4509. CutNRun_seq_FL_Ebf1KO_a_IgG Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651681 Sample Accession: GSM4964246 ID: 304964246 4510. CutNRun_seq_FL_Ebf1KO_a_H3K27Ac Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651680 Sample Accession: GSM4964245 ID: 304964245 4511. CutNRun_seq_FL_Wt_a_IgG Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651679 Sample Accession: GSM4964244 ID: 304964244 4512. CutNRun_seq_FL_Wt_a_H3K27Ac Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651678 Sample Accession: GSM4964243 ID: 304964243 4513. ChIP_seq_FL_EKO_Input_for_H3K27me3 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651677 Sample Accession: GSM4964242 ID: 304964242 4514. ChIP_seq_FL_EKO_aH3K27me3_rep2 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651676 Sample Accession: GSM4964241 ID: 304964241 4515. ChIP_seq_FL_EKO_aH3K27me3_rep1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651675 Sample Accession: GSM4964240 ID: 304964240 4516. ChIP_seq_FL_WT_Input_for_H3K27me3 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651674 Sample Accession: GSM4964239 ID: 304964239 4517. ChIP_seq_FL_WT_aH3K27me3_rep2 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651673 Sample Accession: GSM4964238 ID: 304964238 4518. ChIP_seq_FL_WT_aH3K27me3_rep1 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651672 Sample Accession: GSM4964237 ID: 304964237 4519. ChIP-seq-Ebf1-KO-Input-for-H3K4me2 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651671 Sample Accession: GSM4964236 ID: 304964236 4520. ChIP-seq-Ebf1-KO-H3K4me2 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651670 Sample Accession: GSM4964235 ID: 304964235 4521. ChIP_seq_Wt_Input_for_H3K4me2 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651669 Sample Accession: GSM4964234 ID: 304964234 4522. ChIP-seq-Wt-H3K4me2 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651668 Sample Accession: GSM4964233 ID: 304964233 4523. ChIP_seq_Ebf1KO_Input_for_H3K4me3 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651667 Sample Accession: GSM4964232 ID: 304964232 4524. ChIP_seq_Ebf1KO_a_H3K4me3_rep2 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651666 Sample Accession: GSM4964231 ID: 304964231 4525. ChIP_seq_Ebf1KO_a_H3K4me3_rep1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651665 Sample Accession: GSM4964230 ID: 304964230 4526. ChIP_seq_WT_Input_for_H3K4me3 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651664 Sample Accession: GSM4964229 ID: 304964229 4527. ChIP_seq_WT_a_H3K4me3_rep2 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651663 Sample Accession: GSM4964228 ID: 304964228 4528. ChIP_seq_WT_a_H3K4me3_rep1 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651662 Sample Accession: GSM4964227 ID: 304964227 4529. ChIP-seq-Ebf1-KO-Input-for-BRG1-EP300 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651661 Sample Accession: GSM4964226 ID: 304964226 4530. ChIP-seq-Ebf1-KO-EP300 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651660 Sample Accession: GSM4964225 ID: 304964225 4531. ChIP-seq-Ebf1-KO-BRG1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651659 Sample Accession: GSM4964224 ID: 304964224 4532. ChIP-seq-Wt-Input-for-BRG1-EP300 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651658 Sample Accession: GSM4964223 ID: 304964223 4533. ChIP-seq-Wt-EP300 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651657 Sample Accession: GSM4964222 ID: 304964222 4534. ChIP-seq-Wt-BRG1 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651656 Sample Accession: GSM4964221 ID: 304964221 4535. ChIP_seq_FL_EKO_input_for_Fli1_IKZF1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651655 Sample Accession: GSM4964220 ID: 304964220 4536. ChIP_seq_FL_EKO_a_IKZF1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651654 Sample Accession: GSM4964219 ID: 304964219 4537. ChIP_seq_FL_EKO_a_Fli1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651653 Sample Accession: GSM4964218 ID: 304964218 4538. ChIP_seq_FL_Wt_input_for_Fli1_IKZF1 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651652 Sample Accession: GSM4964217 ID: 304964217 4539. ChIP_seq_FL_Wt_a_IKZF1 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651651 Sample Accession: GSM4964216 ID: 304964216 4540. ChIP_seq_FL_Wt_a_Fli1 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651650 Sample Accession: GSM4964215 ID: 304964215 4541. ChIP_seq_Input_for_Ebf1_KO_a_PolII Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651649 Sample Accession: GSM4964214 ID: 304964214 4542. ChIP_seq_Ebf1_KO_a_RNAPolII Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651648 Sample Accession: GSM4964213 ID: 304964213 4543. ChIP_seq_Input_for_WT_a_PolII Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651647 Sample Accession: GSM4964212 ID: 304964212 4544. ChIP_seq_WT_a_RNAPolII Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651646 Sample Accession: GSM4964211 ID: 304964211 4545. ATAC_seq_FL_Wt_rep3 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651645 Sample Accession: GSM4964210 ID: 304964210 4546. ATAC_seq_FL_Wt_rep2 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651644 Sample Accession: GSM4964209 ID: 304964209 4547. ATAC_seq_FL_Wt_rep1 Organism: Mus musculus Source name: Wt Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651643 Sample Accession: GSM4964208 ID: 304964208 4548. ATAC_seq_FL_E2AKO_rep3 Organism: Mus musculus Source name: E2A-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651642 Sample Accession: GSM4964207 ID: 304964207 4549. ATAC_seq_FL_E2AKO_rep2 Organism: Mus musculus Source name: E2A-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651641 Sample Accession: GSM4964206 ID: 304964206 4550. ATAC_seq_FL_E2AKO_rep1 Organism: Mus musculus Source name: E2A-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651640 Sample Accession: GSM4964205 ID: 304964205 4551. ATAC_seq_EKO_EbfER_72h_4OHT_rep2 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651639 Sample Accession: GSM4964204 ID: 304964204 4552. ATAC_seq_EKO_Ebf1ER_72h_4OHT_rep1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651638 Sample Accession: GSM4964203 ID: 304964203 4553. ATAC_seq_EKO_Ebf1ER_24h_4OHT_rep2 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651637 Sample Accession: GSM4964202 ID: 304964202 4554. ATAC_seq_EKO_Ebf1ER_24h_4OHT_rep1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651636 Sample Accession: GSM4964201 ID: 304964201 4555. ATAC_seq_EKO_Ebf1ER_6h_4OHT_rep2 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651635 Sample Accession: GSM4964200 ID: 304964200 4556. ATAC_seq_EKO_Ebf1ER_6h_4OHT_rep1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651634 Sample Accession: GSM4964199 ID: 304964199 4557. ATAC_seq_EKO_Ebf1ER_0h_4OHT_rep2 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651633 Sample Accession: GSM4964198 ID: 304964198 4558. ATAC_seq_EKO_Ebf1ER_0h_4OHT_rep1 Organism: Mus musculus Source name: Ebf1-KO Fetal liver Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651632 Sample Accession: GSM4964197 ID: 304964197 4559. ATAC_omni_seq_230-238_rep2 Organism: Mus musculus Source name: 230-238 murine Progenitor B celline Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651631 Sample Accession: GSM4964196 ID: 304964196 4560. ATAC_omni_seq_230-238_rep1 Organism: Mus musculus Source name: 230-238 murine Progenitor B celline Platform: GPL19057 Series: GSE162858 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9651630 Sample Accession: GSM4964195 ID: 304964195 4561. ATAC-seq_Pulmonary artery endothelial cells - Control_RepC Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152891 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588622 Sample Accession: GSM4629083 ID: 304629083 4562. ATAC-seq_Pulmonary artery endothelial cells - Control_RepB Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152891 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588621 Sample Accession: GSM4629082 ID: 304629082 4563. ATAC-seq_Pulmonary artery endothelial cells - Control_RepA Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152891 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588620 Sample Accession: GSM4629081 ID: 304629081 4564. ATAC-seq_Pulmonary artery endothelial cells - caMEK5_RepC Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152891 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588619 Sample Accession: GSM4629080 ID: 304629080 4565. ATAC-seq_Pulmonary artery endothelial cells - caMEK5_RepB Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152891 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588618 Sample Accession: GSM4629079 ID: 304629079 4566. ATAC-seq_Pulmonary artery endothelial cells - caMEK5_RepA Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152891 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588617 Sample Accession: GSM4629078 ID: 304629078 4567. ATAC-seq_Pulmonary artery endothelial cells - ST_RepC Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152890 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588616 Sample Accession: GSM4629077 ID: 304629077 4568. ATAC-seq_Pulmonary artery endothelial cells - ST_RepB Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152890 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588615 Sample Accession: GSM4629076 ID: 304629076 4569. ATAC-seq_Pulmonary artery endothelial cells - ST_RepA Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152890 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588614 Sample Accession: GSM4629075 ID: 304629075 4570. ATAC-seq_Pulmonary artery endothelial cells - LSS_RepC Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152890 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588613 Sample Accession: GSM4629074 ID: 304629074 4571. ATAC-seq_Pulmonary artery endothelial cells - LSS_RepB Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152890 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588612 Sample Accession: GSM4629073 ID: 304629073 4572. ATAC-seq_Pulmonary artery endothelial cells - LSS_RepA Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152890 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588611 Sample Accession: GSM4629072 ID: 304629072 4573. ATAC-seq_Pulmonary artery endothelial cells - LSS_siC_RepC Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152889 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588610 Sample Accession: GSM4629071 ID: 304629071 4574. ATAC-seq_Pulmonary artery endothelial cells - LSS_siC_RepB Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152889 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588609 Sample Accession: GSM4629070 ID: 304629070 4575. ATAC-seq_Pulmonary artery endothelial cells - LSS_siC_RepA Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152889 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588608 Sample Accession: GSM4629069 ID: 304629069 4576. ATAC-seq_Pulmonary artery endothelial cells - LSS_siKLF_RepC Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152889 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588607 Sample Accession: GSM4629068 ID: 304629068 4577. ATAC-seq_Pulmonary artery endothelial cells - LSS_siKLF_RepB Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152889 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588606 Sample Accession: GSM4629067 ID: 304629067 4578. ATAC-seq_Pulmonary artery endothelial cells - LSS_siKLF_RepA Organism: Homo sapiens Source name: Pulmonary artery endothelial cells Platform: GPL20301 Series: GSE152889 GSE152900 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8588605 Sample Accession: GSM4629066 ID: 304629066 4579. Human cortex Organism: Homo sapiens Source name: Cortical sample, middle frontal gyrus Platform: GPL24676 Series: GSE174226 FTP download: GEO (CSV, RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5289nnn/GSM5289636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10841852 Sample Accession: GSM5289636 ID: 305289636 4580. Mouse whole brain Organism: Mus musculus Source name: Whole brain Platform: GPL24247 Series: GSE174226 FTP download: GEO (CSV, RDS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5289nnn/GSM5289637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10841853 Sample Accession: GSM5289637 ID: 305289637 4581. SET2-OTX P/R INCB ATAC Seq 2 Organism: Homo sapiens Source name: sAML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389436 Sample Accession: GSM4871295 ID: 304871295 4582. SET2-OTX P/R INCB ATAC Seq 1 Organism: Homo sapiens Source name: sAML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389435 Sample Accession: GSM4871294 ID: 304871294 4583. SET2-OTX P/R Control ATAC Seq 2 Organism: Homo sapiens Source name: sAML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389434 Sample Accession: GSM4871293 ID: 304871293 4584. SET2-OTX P/R Control ATAC Seq 1 Organism: Homo sapiens Source name: sAML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389433 Sample Accession: GSM4871292 ID: 304871292 4585. SET2 INCB ATAC Seq 2 Organism: Homo sapiens Source name: sAML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389432 Sample Accession: GSM4871291 ID: 304871291 4586. SET2 INCB ATAC Seq 1 Organism: Homo sapiens Source name: sAML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389431 Sample Accession: GSM4871290 ID: 304871290 4587. SET2 Control ATAC Seq 2 Organism: Homo sapiens Source name: sAML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389430 Sample Accession: GSM4871289 ID: 304871289 4588. SET2 Control ATAC Seq 1 Organism: Homo sapiens Source name: sAML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389429 Sample Accession: GSM4871288 ID: 304871288 4589. OCI-AML5 INCB-treated ATAC Seq Organism: Homo sapiens Source name: AML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389428 Sample Accession: GSM4871287 ID: 304871287 4590. OCI-AML5 Control ATAC Seq Organism: Homo sapiens Source name: AML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389427 Sample Accession: GSM4871286 ID: 304871286 4591. OCI-AML5 LSD1 knockout ATAC Seq 2 Organism: Homo sapiens Source name: AML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389426 Sample Accession: GSM4871285 ID: 304871285 4592. OCI-AML5 LSD1 knockout ATAC Seq 1 Organism: Homo sapiens Source name: AML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389425 Sample Accession: GSM4871284 ID: 304871284 4593. OCI-AML5 Cas9 ATAC-Seq 2 Organism: Homo sapiens Source name: AML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389424 Sample Accession: GSM4871283 ID: 304871283 4594. OCI-AML5 Cas9 ATAC-Seq 1 Organism: Homo sapiens Source name: AML cultured cell line Platform: GPL18573 Series: GSE160309 GSE160319 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9389423 Sample Accession: GSM4871282 ID: 304871282 4595. SNU16_ATAC_rep2 Organism: Homo sapiens Source name: SNU16 cells Platform: GPL24676 Series: GSE159986 GSE175451 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10973833 Sample Accession: GSM5333780 ID: 305333780 4596. SNU16_ATAC_rep1 Organism: Homo sapiens Source name: SNU16 cells Platform: GPL24676 Series: GSE159986 GSE175451 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10973832 Sample Accession: GSM5333779 ID: 305333779 4597. ATAC_LY108_2 Organism: Mus musculus Source name: polyclonal LCMV-specific CD8+ T cells (GFP+) Platform: GPL19057 Series: GSE149752 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8244472 Sample Accession: GSM4511781 ID: 304511781 4598. ATAC_LY108_1 Organism: Mus musculus Source name: polyclonal LCMV-specific CD8+ T cells (GFP+) Platform: GPL19057 Series: GSE149752 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8244471 Sample Accession: GSM4511780 ID: 304511780 4599. ATAC_CX3CR1_LY108_DN_2 Organism: Mus musculus Source name: polyclonal LCMV-specific CD8+ T cells (GFP+) Platform: GPL19057 Series: GSE149752 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8244470 Sample Accession: GSM4511779 ID: 304511779 4600. ATAC_CX3CR1_LY108_DN_1 Organism: Mus musculus Source name: polyclonal LCMV-specific CD8+ T cells (GFP+) Platform: GPL19057 Series: GSE149752 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8244469 Sample Accession: GSM4511778 ID: 304511778 4601. ATAC_CX3CR1_2 Organism: Mus musculus Source name: polyclonal LCMV-specific CD8+ T cells (GFP+) Platform: GPL19057 Series: GSE149752 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8244468 Sample Accession: GSM4511777 ID: 304511777 4602. ATAC_CX3CR1_1 Organism: Mus musculus Source name: polyclonal LCMV-specific CD8+ T cells (GFP+) Platform: GPL19057 Series: GSE149752 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8244467 Sample Accession: GSM4511776 ID: 304511776 4603. ATAC-Seq Co-culture rep3 + dnAP-1 Organism: Homo sapiens Source name: human fibroblast + mouse ESC co-culture Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785158 Sample Accession: GSM5283111 ID: 305283111 4604. ATAC-Seq Co-culture rep2 + dnAP-1 Organism: Homo sapiens Source name: human fibroblast + mouse ESC co-culture Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785157 Sample Accession: GSM5283110 ID: 305283110 4605. ATAC-Seq Co-culture rep1 + dnAP-1 Organism: Homo sapiens Source name: human fibroblast + mouse ESC co-culture Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785156 Sample Accession: GSM5283109 ID: 305283109 4606. ATAC-Seq Co-culture rep3 Organism: Homo sapiens Source name: human fibroblast + mouse ESC co-culture Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785146 Sample Accession: GSM5283099 ID: 305283099 4607. ATAC-Seq Co-culture rep2 Organism: Homo sapiens Source name: human fibroblast + mouse ESC co-culture Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785145 Sample Accession: GSM5283098 ID: 305283098 4608. ATAC-Seq Co-culture rep1 Organism: Homo sapiens Source name: human fibroblast + mouse ESC co-culture Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785144 Sample Accession: GSM5283097 ID: 305283097 4609. ATAC-Seq Homokaryon Organism: Homo sapiens Source name: human fibroblast fusion Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785143 Sample Accession: GSM5283096 ID: 305283096 4610. ATAC-Seq Fibroblast rep5 Organism: Homo sapiens Source name: human fibroblast Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785142 Sample Accession: GSM5283095 ID: 305283095 4611. ATAC-Seq Fibroblast rep4 Organism: Homo sapiens Source name: human fibroblast Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785141 Sample Accession: GSM5283094 ID: 305283094 4612. ATAC-Seq Fibroblast rep3 Organism: Homo sapiens Source name: human fibroblast Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785140 Sample Accession: GSM5283093 ID: 305283093 4613. ATAC-Seq Fibroblast rep2 Organism: Homo sapiens Source name: human fibroblast Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785139 Sample Accession: GSM5283092 ID: 305283092 4614. ATAC-Seq Fibroblast rep1 Organism: Homo sapiens Source name: human fibroblast Platform: GPL24676 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785138 Sample Accession: GSM5283091 ID: 305283091 4615. ATAC-Seq 48hr rep3 + dnAP-1 Organism: Mus musculus; Homo sapiens Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785167 Sample Accession: GSM5283120 ID: 305283120 4616. ATAC-Seq 48hr rep2 + dnAP-1 Organism: Mus musculus; Homo sapiens Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785166 Sample Accession: GSM5283119 ID: 305283119 4617. ATAC-Seq 48hr rep1 + dnAP-1 Organism: Mus musculus; Homo sapiens Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785165 Sample Accession: GSM5283118 ID: 305283118 4618. ATAC-Seq 16hr rep3 + dnAP-1 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785164 Sample Accession: GSM5283117 ID: 305283117 4619. ATAC-Seq 16hr rep2 + dnAP-1 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785163 Sample Accession: GSM5283116 ID: 305283116 4620. ATAC-Seq 16hr rep1 + dnAP-1 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785162 Sample Accession: GSM5283115 ID: 305283115 4621. ATAC-Seq 3hr rep3 + dnAP-1 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785161 Sample Accession: GSM5283114 ID: 305283114 4622. ATAC-Seq 3hr rep2 + dnAP-1 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785160 Sample Accession: GSM5283113 ID: 305283113 4623. ATAC-Seq 3hr rep1 + dnAP-1 Organism: Mus musculus; Homo sapiens Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785159 Sample Accession: GSM5283112 ID: 305283112 4624. ATAC-Seq 48hr rep2 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785155 Sample Accession: GSM5283108 ID: 305283108 4625. ATAC-Seq 48hr rep1 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785154 Sample Accession: GSM5283107 ID: 305283107 4626. ATAC-Seq 16hr rep4 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283106/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785153 Sample Accession: GSM5283106 ID: 305283106 4627. ATAC-Seq 16hr rep3 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785152 Sample Accession: GSM5283105 ID: 305283105 4628. ATAC-Seq 16hr rep2 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785151 Sample Accession: GSM5283104 ID: 305283104 4629. ATAC-Seq 16hr rep1 Organism: Mus musculus; Homo sapiens Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785150 Sample Accession: GSM5283103 ID: 305283103 4630. ATAC-Seq 3hr rep3 Organism: Mus musculus; Homo sapiens Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785149 Sample Accession: GSM5283102 ID: 305283102 4631. ATAC-Seq 3hr rep2 Organism: Homo sapiens; Mus musculus Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283101/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785148 Sample Accession: GSM5283101 ID: 305283101 4632. ATAC-Seq 3hr rep1 Organism: Mus musculus; Homo sapiens Source name: human fibroblast + mouse ESC fusion Platform: GPL25526 Series: GSE120992 GSE121053 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5283nnn/GSM5283100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10785147 Sample Accession: GSM5283100 ID: 305283100 4633. Cop1_sgRNA2_IFNgamma_Rep2 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950768 Sample Accession: GSM5328122 ID: 305328122 4634. Cop1_sgRNA2_IFNgamma_Rep1 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950767 Sample Accession: GSM5328121 ID: 305328121 4635. Cop1_sgRNA1_IFNgamma_Rep2 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950766 Sample Accession: GSM5328120 ID: 305328120 4636. Cop1_sgRNA1_IFNgamma_Rep1 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950765 Sample Accession: GSM5328119 ID: 305328119 4637. Rosa26_sgRNA_IFNgamma_Rep2 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950764 Sample Accession: GSM5328118 ID: 305328118 4638. Rosa26_sgRNA_IFNgamma_Rep1 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950763 Sample Accession: GSM5328117 ID: 305328117 4639. Cop1_sgRNA2_Rep2 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950762 Sample Accession: GSM5328116 ID: 305328116 4640. Cop1_sgRNA2_Rep1 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950761 Sample Accession: GSM5328115 ID: 305328115 4641. Cop1_sgRNA1_Rep2 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950760 Sample Accession: GSM5328114 ID: 305328114 4642. Cop1_sgRNA1_Rep1 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950759 Sample Accession: GSM5328113 ID: 305328113 4643. Rosa26_sgRNA_Rep2 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950758 Sample Accession: GSM5328112 ID: 305328112 4644. Rosa26_sgRNA_Rep1 (ATAC-Seq) Organism: Mus musculus Source name: 4T1 mouse breast cancer cells Platform: GPL17021 Series: GSE174784 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5328nnn/GSM5328111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10950757 Sample Accession: GSM5328111 ID: 305328111 4645. ATAC-Seq_NB508_shEVI1 Organism: Mus musculus Source name: KPC mouse Platform: GPL19057 Series: GSE166510 GSE166511 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5073nnn/GSM5073504/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10064523 Sample Accession: GSM5073504 ID: 305073504 4646. ATAC-Seq_NB508_shRen Organism: Mus musculus Source name: KPC mouse Platform: GPL19057 Series: GSE166510 GSE166511 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5073nnn/GSM5073503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10064522 Sample Accession: GSM5073503 ID: 305073503 4647. ATAC-Seq_T3-2D_Tet-EVI1_Dox72h Organism: Mus musculus Source name: KPC mouse Platform: GPL19057 Series: GSE166510 GSE166511 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5073nnn/GSM5073502/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10064521 Sample Accession: GSM5073502 ID: 305073502 4648. ATAC-Seq_T3-2D_Tet-EVI1_Dox48h Organism: Mus musculus Source name: KPC mouse Platform: GPL19057 Series: GSE166510 GSE166511 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5073nnn/GSM5073501/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10064520 Sample Accession: GSM5073501 ID: 305073501 4649. ATAC-Seq_T3-2D_Tet-EVI1_Dox24h Organism: Mus musculus Source name: KPC mouse Platform: GPL19057 Series: GSE166510 GSE166511 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5073nnn/GSM5073500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10064519 Sample Accession: GSM5073500 ID: 305073500 4650. ATAC-Seq_T3-2D_Tet-EVI1_Dox0h Organism: Mus musculus Source name: KPC mouse Platform: GPL19057 Series: GSE166510 GSE166511 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5073nnn/GSM5073499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10064518 Sample Accession: GSM5073499 ID: 305073499 4651. ATAC-Seq_T3-2D_EVI1 Organism: Mus musculus Source name: KPC mouse Platform: GPL19057 Series: GSE166510 GSE166511 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5073nnn/GSM5073498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10064517 Sample Accession: GSM5073498 ID: 305073498 4652. ATAC-Seq_T3-2D_emp Organism: Mus musculus Source name: KPC mouse Platform: GPL19057 Series: GSE166510 GSE166511 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5073nnn/GSM5073497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10064516 Sample Accession: GSM5073497 ID: 305073497 4653. ATAC-seq TP53 KO iPSC doxorubicin #2 Organism: Homo sapiens Source name: male FSHD iPSC Platform: GPL11154 Series: GSE149234 GSE149267 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4494nnn/GSM4494726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8167062 Sample Accession: GSM4494726 ID: 304494726 4654. ATAC-seq TP53 KO iPSC doxorubicin #1 Organism: Homo sapiens Source name: male FSHD iPSC Platform: GPL11154 Series: GSE149234 GSE149267 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4494nnn/GSM4494725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8167061 Sample Accession: GSM4494725 ID: 304494725 4655. ATAC-seq TP53 KO iPSC control #2 Organism: Homo sapiens Source name: male FSHD iPSC Platform: GPL11154 Series: GSE149234 GSE149267 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4494nnn/GSM4494724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8167060 Sample Accession: GSM4494724 ID: 304494724 4656. ATAC-seq TP53 KO iPSC control #1 Organism: Homo sapiens Source name: male FSHD iPSC Platform: GPL11154 Series: GSE149234 GSE149267 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4494nnn/GSM4494723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8167059 Sample Accession: GSM4494723 ID: 304494723 4657. ATAC-seq FSHD iPSC doxorubicin #2 Organism: Homo sapiens Source name: male FSHD iPSC Platform: GPL11154 Series: GSE149234 GSE149267 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4494nnn/GSM4494722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8167058 Sample Accession: GSM4494722 ID: 304494722 4658. ATAC-seq FSHD iPSC doxorubicin #1 Organism: Homo sapiens Source name: male FSHD iPSC Platform: GPL11154 Series: GSE149234 GSE149267 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4494nnn/GSM4494721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8167057 Sample Accession: GSM4494721 ID: 304494721 4659. ATAC-seq FSHD iPSC control #2 Organism: Homo sapiens Source name: male FSHD iPSC Platform: GPL11154 Series: GSE149234 GSE149267 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4494nnn/GSM4494720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8167056 Sample Accession: GSM4494720 ID: 304494720 4660. ATAC-seq FSHD iPSC control #1 Organism: Homo sapiens Source name: male FSHD iPSC Platform: GPL11154 Series: GSE149234 GSE149267 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4494nnn/GSM4494719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8167055 Sample Accession: GSM4494719 ID: 304494719 4661. CAG-Dmrt1 ATAC-seq rep 3 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL17021 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404227 Sample Accession: GSM5184264 ID: 305184264 4662. CAG-Dmrt1 ATAC-seq rep 2 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL17021 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404226 Sample Accession: GSM5184263 ID: 305184263 4663. CAG-Dmrt1 ATAC-seq rep 1 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL17021 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404225 Sample Accession: GSM5184262 ID: 305184262 4664. Control for CAG-Dmrt1 ATAC-seq rep 3 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL17021 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404224 Sample Accession: GSM5184261 ID: 305184261 4665. Control for CAG-Dmrt1 ATAC-seq rep 2 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL17021 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404223 Sample Accession: GSM5184260 ID: 305184260 4666. Control for CAG-Dmrt1 ATAC-seq rep 1 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL17021 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404222 Sample Accession: GSM5184259 ID: 305184259 4667. CAG-Sox9 ATAC-seq rep 3 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404221 Sample Accession: GSM5184258 ID: 305184258 4668. CAG-Sox9 ATAC-seq rep 2 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404193 Sample Accession: GSM5184257 ID: 305184257 4669. CAG-Sox9 ATAC-seq rep 1 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404192 Sample Accession: GSM5184256 ID: 305184256 4670. Control for CAG-Sox9 ATAC-seq rep 3 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404191 Sample Accession: GSM5184255 ID: 305184255 4671. Control for CAG-Sox9 ATAC-seq rep 2 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404190 Sample Accession: GSM5184254 ID: 305184254 4672. Control for CAG-Sox9 ATAC-seq rep 1 (6 DPTx) Organism: Mus musculus Source name: Cultured Granulosa Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404189 Sample Accession: GSM5184253 ID: 305184253 4673. Sertoli ATAC-seq rep2 (P7) Organism: Mus musculus Source name: Sertoli Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404188 Sample Accession: GSM5184252 ID: 305184252 4674. Sertoli ATAC-seq rep1 (P7) Organism: Mus musculus Source name: Sertoli Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404187 Sample Accession: GSM5184251 ID: 305184251 4675. Granulosa ATAC-seq rep2 (P23) Organism: Mus musculus Source name: Granulosa Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404186 Sample Accession: GSM5184250 ID: 305184250 4676. Granulosa ATAC-seq rep1 (P23) Organism: Mus musculus Source name: Granulosa Cells Platform: GPL21103 Series: GSE154484 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10404185 Sample Accession: GSM5184249 ID: 305184249 4677. Gluta neurons ATAC-seq rep2 Organism: Homo sapiens Source name: Glutamatergic neurons Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944095 Sample Accession: GSM5324902 ID: 305324902 4678. Gluta neurons ATAC-seq rep1 Organism: Homo sapiens Source name: Glutamatergic neurons Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944094 Sample Accession: GSM5324901 ID: 305324901 4679. GABA neurons ATAC-seq rep2 Organism: Homo sapiens Source name: GABA neurons Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944093 Sample Accession: GSM5324900 ID: 305324900 4680. GABA neurons ATAC-seq rep1 Organism: Homo sapiens Source name: GABA neurons Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944092 Sample Accession: GSM5324899 ID: 305324899 4681. NSC ATAC-seq rep2 Organism: Homo sapiens Source name: Neural stem cells Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944091 Sample Accession: GSM5324898 ID: 305324898 4682. NSC ATAC-seq rep1 Organism: Homo sapiens Source name: Neural stem cells Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944090 Sample Accession: GSM5324897 ID: 305324897 4683. GE ATAC-seq rep2 Organism: Homo sapiens Source name: Ganglionic eminence cells Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944089 Sample Accession: GSM5324896 ID: 305324896 4684. GE ATAC-seq rep1 Organism: Homo sapiens Source name: Ganglionic eminence cells Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944088 Sample Accession: GSM5324895 ID: 305324895 4685. NPC ATAC-seq rep2 Organism: Homo sapiens Source name: Neural progenitor cells Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944087 Sample Accession: GSM5324894 ID: 305324894 4686. NPC ATAC-seq rep1 Organism: Homo sapiens Source name: Neural progenitor cells Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944086 Sample Accession: GSM5324893 ID: 305324893 4687. iPSC ATAC-seq rep2 Organism: Homo sapiens Source name: Induced pluripotent stem cells Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944085 Sample Accession: GSM5324892 ID: 305324892 4688. iPSC ATAC-seq rep1 Organism: Homo sapiens Source name: Induced pluripotent stem cells Platform: GPL15520 Series: GSE174727 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5324nnn/GSM5324891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10944084 Sample Accession: GSM5324891 ID: 305324891 4689. ATAC-seq_E2F4 oht2 Organism: Mus musculus Source name: Eset1/Eset2/G9a/Glp/Suv39h1/Suv39h2 KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388211 Sample Accession: GSM4220884 ID: 304220884 4690. ATAC-seq_E2F4 oht1 Organism: Mus musculus Source name: Eset1/Eset2/G9a/Glp/Suv39h1/Suv39h2 KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388210 Sample Accession: GSM4220883 ID: 304220883 4691. ATAC-seq_B1A6 oht2 Organism: Mus musculus Source name: Eset1/Eset2/Suv39h1/Suv39h2/G9a/Glp KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388209 Sample Accession: GSM4220882 ID: 304220882 4692. ATAC-seq_B1A6 oht1 Organism: Mus musculus Source name: Eset1/Eset2/Suv39h1/Suv39h2/G9a/Glp KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388208 Sample Accession: GSM4220881 ID: 304220881 4693. ATAC-seq_E2 oht2 Organism: Mus musculus Source name: Eset1/Eset2/G9a/Glp KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388207 Sample Accession: GSM4220880 ID: 304220880 4694. ATAC-seq_E2 oht1 Organism: Mus musculus Source name: Eset1/Eset2/G9a/Glp KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388206 Sample Accession: GSM4220879 ID: 304220879 4695. ATAC-seq_B1 oht2 Organism: Mus musculus Source name: Eset1/Suv39h1/Suv39h2 KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388205 Sample Accession: GSM4220878 ID: 304220878 4696. ATAC-seq_B1 oht1 Organism: Mus musculus Source name: Eset1/Suv39h1/Suv39h2 KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388204 Sample Accession: GSM4220877 ID: 304220877 4697. ATAC-seq_A4 oht2 Organism: Mus musculus Source name: Eset1/Eset2 KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388203 Sample Accession: GSM4220876 ID: 304220876 4698. ATAC-seq_A4 oht1 Organism: Mus musculus Source name: Eset1/Eset2 KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388202 Sample Accession: GSM4220875 ID: 304220875 4699. ATAC-seq_A4 ctr2 Organism: Mus musculus Source name: Eset2 KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388201 Sample Accession: GSM4220874 ID: 304220874 4700. ATAC-seq_A4 ctr1 Organism: Mus musculus Source name: Eset2 KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388200 Sample Accession: GSM4220873 ID: 304220873 4701. ATAC-seq_E25 oht2 Organism: Mus musculus Source name: Eset1KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388199 Sample Accession: GSM4220872 ID: 304220872 4702. ATAC-seq_E25 oht1 Organism: Mus musculus Source name: Eset1KO Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388198 Sample Accession: GSM4220871 ID: 304220871 4703. ATAC-seq_E25 ctr2 Organism: Mus musculus Source name: control Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388197 Sample Accession: GSM4220870 ID: 304220870 4704. ATAC-seq_E25 ctr1 Organism: Mus musculus Source name: control Platform: GPL21493 Series: GSE142104 GSE142105 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4220nnn/GSM4220869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7388196 Sample Accession: GSM4220869 ID: 304220869 4705. ATACseq_ESC_dTAG_20h_r2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873478 Sample Accession: GSM4708463 ID: 304708463 4706. ATACseq_ESC_dTAG_6h_r2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873477 Sample Accession: GSM4708462 ID: 304708462 4707. ATACseq_ESC_dTAG_4h_r2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873476 Sample Accession: GSM4708461 ID: 304708461 4708. ATACseq_ESC_dTAG_2h_r2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873475 Sample Accession: GSM4708460 ID: 304708460 4709. ATACseq_ESC_dTAG_1h_r2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873474 Sample Accession: GSM4708459 ID: 304708459 4710. ATACseq_ESC_dTAG_UT_r2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873473 Sample Accession: GSM4708458 ID: 304708458 4711. ATACseq_ESC_wt_r2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873472 Sample Accession: GSM4708457 ID: 304708457 4712. ATACseq_ESC_dTAG_20h_r1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873471 Sample Accession: GSM4708456 ID: 304708456 4713. ATACseq_ESC_dTAG_6h_r1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873470 Sample Accession: GSM4708455 ID: 304708455 4714. ATACseq_ESC_dTAG_4h_r1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873469 Sample Accession: GSM4708454 ID: 304708454 4715. ATACseq_ESC_dTAG_2h_r1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873468 Sample Accession: GSM4708453 ID: 304708453 4716. ATACseq_ESC_dTAG_1h_r1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873467 Sample Accession: GSM4708452 ID: 304708452 4717. ATACseq_ESC_dTAG_UT_r1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873466 Sample Accession: GSM4708451 ID: 304708451 4718. ATACseq_ESC_wt_r1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE155601 GSE155604 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4708nnn/GSM4708450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8873465 Sample Accession: GSM4708450 ID: 304708450 4719. CXCR5neg_2: Memory Day 7 CXCR5neg rep2 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921087 Sample Accession: GSM5031931 ID: 305031931 4720. CXCR5neg_1: Memory Day 7 CXCR5neg rep1 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921086 Sample Accession: GSM5031930 ID: 305031930 4721. CXCR5pos_2: Memory Day 7 CXCR5pos rep2 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921085 Sample Accession: GSM5031929 ID: 305031929 4722. CXCR5pos_1: Memory Day 7 CXCR5pos rep1 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921084 Sample Accession: GSM5031928 ID: 305031928 4723. M56Ag_2: Memory Day 56 + Antigen rep2 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921083 Sample Accession: GSM5031927 ID: 305031927 4724. M56Ag_1: Memory Day 56 + Antigen rep1 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921082 Sample Accession: GSM5031926 ID: 305031926 4725. M28Ag_2: Memory Day 28 + Antigen rep2 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921081 Sample Accession: GSM5031925 ID: 305031925 4726. M28Ag_1: Memory Day 28 + Antigen rep1 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921080 Sample Accession: GSM5031924 ID: 305031924 4727. M56_2: Memory Day 56 rep2 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921079 Sample Accession: GSM5031923 ID: 305031923 4728. M56_1: Memory Day 56 rep1 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921078 Sample Accession: GSM5031922 ID: 305031922 4729. M28_2: Memory Day 28 rep2 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921077 Sample Accession: GSM5031921 ID: 305031921 4730. M28_1: Memory Day 28 rep1 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921076 Sample Accession: GSM5031920 ID: 305031920 4731. M7_2: Memory Day 7 rep2 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031919/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921075 Sample Accession: GSM5031919 ID: 305031919 4732. M7_1: Memory Day 7 rep1 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921074 Sample Accession: GSM5031918 ID: 305031918 4733. N_2: Naïve rep2 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921073 Sample Accession: GSM5031917 ID: 305031917 4734. N_1: Naïve rep1 ATAC-seq Organism: Mus musculus Source name: CD4 T cells Platform: GPL19057 Series: GSE165346 GSE165348 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5031nnn/GSM5031916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9921072 Sample Accession: GSM5031916 ID: 305031916 4735. ATAC-seq on A673 STAG2 null Organism: Homo sapiens Source name: A673 clones with STAG2 null Platform: GPL21290 Series: GSE116494 GSE116495 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3240nnn/GSM3240330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4330296 Sample Accession: GSM3240330 ID: 303240330 4736. ATAC-seq on A673 STAG2 WT Organism: Homo sapiens Source name: A673 clones with STAG2 wild type Platform: GPL21290 Series: GSE116494 GSE116495 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3240nnn/GSM3240329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4330295 Sample Accession: GSM3240329 ID: 303240329 4737. Tr4_2 Organism: Mus musculus Source name: CD4+ T cells Platform: GPL23479 Series: GSE152810 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8581961 Sample Accession: GSM4626796 ID: 304626796 4738. Tr4_1 Organism: Mus musculus Source name: CD4+ T cells Platform: GPL23479 Series: GSE152810 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8581960 Sample Accession: GSM4626795 ID: 304626795 4739. Tr_2 Organism: Mus musculus Source name: CD4+ T cells Platform: GPL23479 Series: GSE152810 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8581959 Sample Accession: GSM4626794 ID: 304626794 4740. Tr_1 Organism: Mus musculus Source name: CD4+ T cells Platform: GPL23479 Series: GSE152810 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8581958 Sample Accession: GSM4626793 ID: 304626793 4741. ATAC-seq_MCF7-DR_2 Organism: Homo sapiens Source name: doxorubicin-resistant MCF7 (MCF7-DR) Platform: GPL24676 Series: GSE174152 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5287nnn/GSM5287982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10828158 Sample Accession: GSM5287982 ID: 305287982 4742. ATAC-seq_MCF7-DR_1 Organism: Homo sapiens Source name: doxorubicin-resistant MCF7 (MCF7-DR) Platform: GPL24676 Series: GSE174152 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5287nnn/GSM5287981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10828157 Sample Accession: GSM5287981 ID: 305287981 4743. ATAC-seq_MCF7_2 Organism: Homo sapiens Source name: parental MCF7 Platform: GPL24676 Series: GSE174152 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5287nnn/GSM5287980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10828156 Sample Accession: GSM5287980 ID: 305287980 4744. ATAC-seq_MCF7_1 Organism: Homo sapiens Source name: parental MCF7 Platform: GPL24676 Series: GSE174152 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5287nnn/GSM5287979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10828155 Sample Accession: GSM5287979 ID: 305287979 4745. ATAC-seq in HeLa cells in arginine-free DMEM Organism: Homo sapiens Source name: Cervical cancer cell line (HeLa) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212116 Sample Accession: GSM5128945 ID: 305128945 4746. ATAC-seq in HeLa cells in complete DMEM Organism: Homo sapiens Source name: Cervical cancer cell line (HeLa) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212115 Sample Accession: GSM5128944 ID: 305128944 4747. ATAC-seq in unstimulated CD4 T-cells rep 5 Organism: Homo sapiens Source name: Unstimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212114 Sample Accession: GSM5128943 ID: 305128943 4748. ATAC-seq in CD4 T-cells cells treated with rapamycin rep 5 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212113 Sample Accession: GSM5128942 ID: 305128942 4749. ATAC-seq in CD4 T-cells cells in arginine-free medium rep 5 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212112 Sample Accession: GSM5128941 ID: 305128941 4750. ATAC-seq in CD4 T-cells cells in low arginine medium rep 5 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212111 Sample Accession: GSM5128940 ID: 305128940 4751. ATAC-seq in CD4 T-cells cells in full medium rep 5 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212110 Sample Accession: GSM5128939 ID: 305128939 4752. ATAC-seq in unstimulated CD4 T-cells rep 4 Organism: Homo sapiens Source name: Unstimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212109 Sample Accession: GSM5128938 ID: 305128938 4753. ATAC-seq in CD4 T-cells cells treated with rapamycin rep 4 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212108 Sample Accession: GSM5128937 ID: 305128937 4754. ATAC-seq in CD4 T-cells cells in arginine-free medium rep 4 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212107 Sample Accession: GSM5128936 ID: 305128936 4755. ATAC-seq in CD4 T-cells cells in low arginine medium rep 4 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212106 Sample Accession: GSM5128935 ID: 305128935 4756. ATAC-seq in CD4 T-cells cells in full medium rep 4 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212105 Sample Accession: GSM5128934 ID: 305128934 4757. ATAC-seq in unstimulated CD4 T-cells rep 3 Organism: Homo sapiens Source name: Unstimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212104 Sample Accession: GSM5128933 ID: 305128933 4758. ATAC-seq in unstimulated CD4 T-cells rep 2 Organism: Homo sapiens Source name: Unstimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212103 Sample Accession: GSM5128932 ID: 305128932 4759. ATAC-seq in unstimulated CD4 T-cells rep 1 Organism: Homo sapiens Source name: Unstimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10212102 Sample Accession: GSM5128931 ID: 305128931 4760. THP1 noArg ATAC rep 3 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813433 Sample Accession: GSM4066055 ID: 304066055 4761. THP1 lowArg ATAC rep 3 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813432 Sample Accession: GSM4066054 ID: 304066054 4762. THP1 fullArg ATAC rep 3 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813431 Sample Accession: GSM4066053 ID: 304066053 4763. THP1 noArg ATAC rep 2 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813430 Sample Accession: GSM4066052 ID: 304066052 4764. THP1 lowArg ATAC rep 2 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813429 Sample Accession: GSM4066051 ID: 304066051 4765. THP1 fullArg ATAC rep 2 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813428 Sample Accession: GSM4066050 ID: 304066050 4766. THP1 noArg ATAC rep 1 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813427 Sample Accession: GSM4066049 ID: 304066049 4767. THP1 lowArg ATAC rep 1 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813426 Sample Accession: GSM4066048 ID: 304066048 4768. THP1 fullArg ATAC rep 1 Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813425 Sample Accession: GSM4066047 ID: 304066047 4769. CD4 T-cell noArg ATAC rep 3 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813424 Sample Accession: GSM4066046 ID: 304066046 4770. CD4 T-cell lowArg ATAC rep 3 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813423 Sample Accession: GSM4066045 ID: 304066045 4771. CD4 T-cell fullArg ATAC rep 3 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813422 Sample Accession: GSM4066044 ID: 304066044 4772. CD4 T-cell noArg ATAC rep 2 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813421 Sample Accession: GSM4066043 ID: 304066043 4773. CD4 T-cell lowArg ATAC rep 2 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813420 Sample Accession: GSM4066042 ID: 304066042 4774. CD4 T-cell fullArg ATAC rep 2 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813419 Sample Accession: GSM4066041 ID: 304066041 4775. CD4 T-cell noArg ATAC rep 1 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813418 Sample Accession: GSM4066040 ID: 304066040 4776. CD4 T-cell lowArg ATAC rep 1 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813417 Sample Accession: GSM4066039 ID: 304066039 4777. CD4 T-cell fullArg ATAC rep 1 Organism: Homo sapiens Source name: Stimulated human CD4 T-cells Platform: GPL18573 Series: GSE137032 GSE137034 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6813416 Sample Accession: GSM4066038 ID: 304066038 4778. ATAC-seq-regulatory T cells-deficiency of Foxp3 enhancer CNS0 and CNS3 (CNS03DKO) Organism: Mus musculus Source name: Regulatory T cells were sorted by GFP expression from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140671 Sample Accession: GSM4792267 ID: 304792267 4779. ATAC-seq-regulatory T cells-deficiency of Foxp3 enhancer CNS0 (CNS4KO) Organism: Mus musculus Source name: Regulatory T cells were sorted by GFP expression from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140670 Sample Accession: GSM4792266 ID: 304792266 4780. ATAC-seq-regulatory T cells-deficiency of Foxp3 enhancer CNS3 (CNS3KO) Organism: Mus musculus Source name: Regulatory T cells were sorted by GFP expression from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140669 Sample Accession: GSM4792265 ID: 304792265 4781. ATAC-seq-regulatory T cells-wild type Foxp3-GFP Organism: Mus musculus Source name: Regulatory T cells were sorted by GFP expression from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140668 Sample Accession: GSM4792264 ID: 304792264 4782. ATAC-seq-naive CD4 T cells-deficiency of Foxp3 enhancer CNS0 and CNS3 (CNS03DKO) Organism: Mus musculus Source name: Naïve CD4 T cells were sorted by CD45.2+CD4+TCRbeta+GFP-CD25-CD44highCD62low from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140667 Sample Accession: GSM4792263 ID: 304792263 4783. ATAC-seq-naive CD4 T cells-deficiency of Foxp3 enhancer CNS0 (CNS0KO) Organism: Mus musculus Source name: Naïve CD4 T cells were sorted by CD45.2+CD4+TCRbeta+GFP-CD25-CD44highCD62low from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140666 Sample Accession: GSM4792262 ID: 304792262 4784. ATAC-seq-naive CD4 T cells-deficiency of Foxp3 enhancer CNS3 (CNS3KO) Organism: Mus musculus Source name: Naïve CD4 T cells were sorted by CD45.2+CD4+TCRbeta+GFP-CD25-CD44highCD62low from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140665 Sample Accession: GSM4792261 ID: 304792261 4785. ATAC-seq-naive CD4 T cells-wild type Foxp3-GFP Organism: Mus musculus Source name: Naïve CD4 T cells were sorted by CD45.2+CD4+TCRbeta+GFP-CD25-CD44highCD62low from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140664 Sample Accession: GSM4792260 ID: 304792260 4786. ATAC-seq-regulatory T cells-deficiency of Foxp3 enhancer CNS0 (CNS0KO) Organism: Mus musculus Source name: Regulatory T cells were sorted by GFP expression from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140663 Sample Accession: GSM4792259 ID: 304792259 4787. ATAC-seq-regulatory T cells-deficiency of Foxp3 enhancer CNS0 and CNS2 (CNS02DKO) Organism: Mus musculus Source name: Regulatory T cells were sorted by GFP expression from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140662 Sample Accession: GSM4792258 ID: 304792258 4788. ATAC-seq-regulatory T cells-wild type Foxp3-GFP Organism: Mus musculus Source name: Regulatory T cells were sorted by GFP expression from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140661 Sample Accession: GSM4792257 ID: 304792257 4789. ATAC-seq-regulatory T cells-deficiency of Foxp3 enhancer CNS2 (CNS2KO) Organism: Mus musculus Source name: Regulatory T cells were sorted by GFP expression from mixed bone marrow chimeric mice generated with bone marrows from male donors of CD45.1 wild-type mice and CD45.2 mice of indicated genotypes Platform: GPL24247 Series: GSE158105 GSE158223 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9140660 Sample Accession: GSM4792256 ID: 304792256 4790. ATAC-seq_MCF7 cells – TBOOH 24 hrs – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723593 Sample Accession: GSM5273380 ID: 305273380 4791. ATAC-seq_MCF7 cells – TBOOH 24 hrs – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723592 Sample Accession: GSM5273379 ID: 305273379 4792. ATAC-seq_MCF7 cells – MEN 24 hrs – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723591 Sample Accession: GSM5273378 ID: 305273378 4793. ATAC-seq_MCF7 cells – MEN 24 hrs – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723590 Sample Accession: GSM5273377 ID: 305273377 4794. ATAC-seq_MCF7 cells – EtOH 24 hrs – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723589 Sample Accession: GSM5273376 ID: 305273376 4795. ATAC-seq_MCF7 cells – EtOH 24 hrs – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723588 Sample Accession: GSM5273375 ID: 305273375 4796. ATAC-seq_MCF7 cells – TBOOH 8 hrs – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723587 Sample Accession: GSM5273374 ID: 305273374 4797. ATAC-seq_MCF7 cells – TBOOH 8 hrs – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723586 Sample Accession: GSM5273373 ID: 305273373 4798. ATAC-seq_MCF7 cells – MEN 8 hrs – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723585 Sample Accession: GSM5273372 ID: 305273372 4799. ATAC-seq_MCF7 cells – MEN 8 hrs – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723584 Sample Accession: GSM5273371 ID: 305273371 4800. ATAC-seq_MCF7 cells – EtOH 8 hrs – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723583 Sample Accession: GSM5273370 ID: 305273370 4801. ATAC-seq_MCF7 cells – EtOH 8 hrs – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723582 Sample Accession: GSM5273369 ID: 305273369 4802. ATAC-seq_MCF7 cells – TBOOH 1 hr – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723581 Sample Accession: GSM5273368 ID: 305273368 4803. ATAC-seq_MCF7 cells – TBOOH 1 hr – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723580 Sample Accession: GSM5273367 ID: 305273367 4804. ATAC-seq_MCF7 cells – MEN 1 hr – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723579 Sample Accession: GSM5273366 ID: 305273366 4805. ATAC-seq_MCF7 cells – MEN 1 hr – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723578 Sample Accession: GSM5273365 ID: 305273365 4806. ATAC-seq_MCF7 cells – EtOH 1 hr – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723577 Sample Accession: GSM5273364 ID: 305273364 4807. ATAC-seq_MCF7 cells – EtOH 1 hr – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723576 Sample Accession: GSM5273363 ID: 305273363 4808. ATAC-seq_MCF7 cells – control 0 hr – rep 2 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723575 Sample Accession: GSM5273362 ID: 305273362 4809. ATAC-seq_MCF7 cells – control 0 hr – rep 1 Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE173663 GSE173664 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10723574 Sample Accession: GSM5273361 ID: 305273361 4810. ATAC-seq old rep4 Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL21103 Series: GSE148619 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111579 Sample Accession: GSM4475253 ID: 304475253 4811. ATAC-seq old rep3 Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL21103 Series: GSE148619 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111578 Sample Accession: GSM4475252 ID: 304475252 4812. ATAC-seq old rep2 Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL21103 Series: GSE148619 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111577 Sample Accession: GSM4475251 ID: 304475251 4813. ATAC-seq old rep1 Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL21103 Series: GSE148619 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111576 Sample Accession: GSM4475250 ID: 304475250 4814. ATAC-seq young rep4 Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL21103 Series: GSE148619 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111575 Sample Accession: GSM4475249 ID: 304475249 4815. ATAC-seq young rep3 Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL21103 Series: GSE148619 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111574 Sample Accession: GSM4475248 ID: 304475248 4816. ATAC-seq young rep2 Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL21103 Series: GSE148619 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111573 Sample Accession: GSM4475247 ID: 304475247 4817. ATAC-seq young rep1 Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL21103 Series: GSE148619 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111572 Sample Accession: GSM4475246 ID: 304475246 4818. ATAC-Seq E18_5 Organism: Mus musculus Source name: mouse brain cortex Platform: GPL19057 Series: GSE153163 GSE153164 FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4635nnn/GSM4635091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8609929 Sample Accession: GSM4635091 ID: 304635091 4819. ATAC-Seq E15_5 Organism: Mus musculus Source name: mouse brain cortex Platform: GPL19057 Series: GSE153163 GSE153164 FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4635nnn/GSM4635090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8609928 Sample Accession: GSM4635090 ID: 304635090 4820. ATAC-Seq E13_5 Organism: Mus musculus Source name: mouse brain cortex Platform: GPL19057 Series: GSE153163 GSE153164 FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4635nnn/GSM4635089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8609927 Sample Accession: GSM4635089 ID: 304635089 4821. ATAC-seq, cell line MUN14, replicate 3 Organism: Homo sapiens Source name: neuroinvasive EBV+ B cell lymphoma cell line subpopulation MUN14 Platform: GPL18573 Series: GSE172476 GSE172477 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5257nnn/GSM5257744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10650909 Sample Accession: GSM5257744 ID: 305257744 4822. ATAC-seq, cell line MUN14, replicate 2 Organism: Homo sapiens Source name: neuroinvasive EBV+ B cell lymphoma cell line subpopulation MUN14 Platform: GPL18573 Series: GSE172476 GSE172477 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5257nnn/GSM5257743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10650908 Sample Accession: GSM5257743 ID: 305257743 4823. ATAC-seq, cell line MUN14, replicate 1 Organism: Homo sapiens Source name: neuroinvasive EBV+ B cell lymphoma cell line subpopulation MUN14 Platform: GPL18573 Series: GSE172476 GSE172477 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5257nnn/GSM5257742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10650907 Sample Accession: GSM5257742 ID: 305257742 4824. ATAC-seq, cell line M14, replicate 3 Organism: Homo sapiens Source name: parental EBV+ B cell lymphoma cell line M14 Platform: GPL18573 Series: GSE172476 GSE172477 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5257nnn/GSM5257741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10650906 Sample Accession: GSM5257741 ID: 305257741 4825. ATAC-seq, cell line M14, replicate 2 Organism: Homo sapiens Source name: parental EBV+ B cell lymphoma cell line M14 Platform: GPL18573 Series: GSE172476 GSE172477 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5257nnn/GSM5257740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10650905 Sample Accession: GSM5257740 ID: 305257740 4826. ATAC-seq, cell line M14, replicate 1 Organism: Homo sapiens Source name: parental EBV+ B cell lymphoma cell line M14 Platform: GPL18573 Series: GSE172476 GSE172477 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5257nnn/GSM5257739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10650904 Sample Accession: GSM5257739 ID: 305257739 4827. Bap1flfl_ATACseq_OHT_rep4 Organism: Mus musculus; Drosophila melanogaster Source name: mESCs with Drosophila spike-in, tamoxifen-treated (96hr OHT), ATAC-seq Platform: GPL25537 Series: GSE161994 GSE161996 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9555332 Sample Accession: GSM4929442 ID: 304929442 4828. Bap1flfl_ATACseq_OHT_rep3 Organism: Mus musculus; Drosophila melanogaster Source name: mESCs with Drosophila spike-in, tamoxifen-treated (96hr OHT), ATAC-seq Platform: GPL25537 Series: GSE161994 GSE161996 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9555331 Sample Accession: GSM4929441 ID: 304929441 4829. Bap1flfl_ATACseq_OHT_rep2 Organism: Drosophila melanogaster; Mus musculus Source name: mESCs with Drosophila spike-in, tamoxifen-treated (96hr OHT), ATAC-seq Platform: GPL25537 Series: GSE161994 GSE161996 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9555330 Sample Accession: GSM4929440 ID: 304929440 4830. Bap1flfl_ATACseq_OHT_rep1 Organism: Drosophila melanogaster; Mus musculus Source name: mESCs with Drosophila spike-in, tamoxifen-treated (96hr OHT), ATAC-seq Platform: GPL25537 Series: GSE161994 GSE161996 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9555329 Sample Accession: GSM4929439 ID: 304929439 4831. Bap1flfl_ATACseq_UNT_rep4 Organism: Drosophila melanogaster; Mus musculus Source name: mESCs with Drosophila spike-in, untreated control, ATAC-seq Platform: GPL25537 Series: GSE161994 GSE161996 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9555328 Sample Accession: GSM4929438 ID: 304929438 4832. Bap1flfl_ATACseq_UNT_rep3 Organism: Drosophila melanogaster; Mus musculus Source name: mESCs with Drosophila spike-in, untreated control, ATAC-seq Platform: GPL25537 Series: GSE161994 GSE161996 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9555327 Sample Accession: GSM4929437 ID: 304929437 4833. Bap1flfl_ATACseq_UNT_rep2 Organism: Mus musculus; Drosophila melanogaster Source name: mESCs with Drosophila spike-in, untreated control, ATAC-seq Platform: GPL25537 Series: GSE161994 GSE161996 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9555326 Sample Accession: GSM4929436 ID: 304929436 4834. Bap1flfl_ATACseq_UNT_rep1 Organism: Mus musculus; Drosophila melanogaster Source name: mESCs with Drosophila spike-in, untreated control, ATAC-seq Platform: GPL25537 Series: GSE161994 GSE161996 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9555325 Sample Accession: GSM4929435 ID: 304929435 4835. PRO-seq dTAG47 4hr rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857641 Sample Accession: GSM5023054 ID: 305023054 4836. PRO-seq dTAG47 4hr rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857640 Sample Accession: GSM5023053 ID: 305023053 4837. PRO-seq DMSO rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857639 Sample Accession: GSM5023052 ID: 305023052 4838. PRO-seq DMSO rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857638 Sample Accession: GSM5023051 ID: 305023051 4839. RNAseq DTMYC dTAG47 rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857637 Sample Accession: GSM5023050 ID: 305023050 4840. RNAseq DTMYC dTAG47 rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857636 Sample Accession: GSM5023049 ID: 305023049 4841. RNAseq DTMYC dTAG47 rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857635 Sample Accession: GSM5023048 ID: 305023048 4842. RNAseq DTMYC DMSO rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857634 Sample Accession: GSM5023047 ID: 305023047 4843. RNAseq DTMYC DMSO rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857633 Sample Accession: GSM5023046 ID: 305023046 4844. RNAseq DTMYC DMSO rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857632 Sample Accession: GSM5023045 ID: 305023045 4845. RNAseq parental dTAG47 rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857631 Sample Accession: GSM5023044 ID: 305023044 4846. RNAseq parental dTAG47 rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857630 Sample Accession: GSM5023043 ID: 305023043 4847. RNAseq parental dTAG47 rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857629 Sample Accession: GSM5023042 ID: 305023042 4848. RNAseq parental DMSO rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857628 Sample Accession: GSM5023041 ID: 305023041 4849. RNAseq parental DMSO rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857627 Sample Accession: GSM5023040 ID: 305023040 4850. RNAseq parental DMSO rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857626 Sample Accession: GSM5023039 ID: 305023039 4851. ATAC-seq dTAG47 rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857625 Sample Accession: GSM5023038 ID: 305023038 4852. ATAC-seq dTAG47 rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857624 Sample Accession: GSM5023037 ID: 305023037 4853. ATAC-seq dTAG47 rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857623 Sample Accession: GSM5023036 ID: 305023036 4854. ATAC-seq DMSO rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857622 Sample Accession: GSM5023035 ID: 305023035 4855. ATAC-seq DMSO rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857621 Sample Accession: GSM5023034 ID: 305023034 4856. ATAC-seq DMSO rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857620 Sample Accession: GSM5023033 ID: 305023033 4857. ChIP-seq MYC dTAG47 rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857619 Sample Accession: GSM5023032 ID: 305023032 4858. ChIP-seq MYC dTAG47 rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857618 Sample Accession: GSM5023031 ID: 305023031 4859. ChIP-seq MYC dTAG47 rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857617 Sample Accession: GSM5023030 ID: 305023030 4860. ChIP-seq MYC DMSO rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857616 Sample Accession: GSM5023029 ID: 305023029 4861. ChIP-seq MYC DMSO rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5023nnn/GSM5023028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857615 Sample Accession: GSM5023028 ID: 305023028 4862. ChIP-seq IgG rep3 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857614 Sample Accession: GSM5023027 ID: 305023027 4863. ChIP-seq IgG rep2 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857613 Sample Accession: GSM5023026 ID: 305023026 4864. ChIP-seq IgG rep1 Organism: Homo sapiens Source name: Malignant rhabdoid tumor of kidney cell line Platform: GPL24676 Series: GSE164926 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9857642 Sample Accession: GSM5023025 ID: 305023025 4865. scATAC-aSP95_KP_Primary_21A Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159766 Sample Accession: GSM5104510 ID: 305104510 4866. scATAC-aSP87_KP_Female Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104509/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159765 Sample Accession: GSM5104509 ID: 305104509 4867. scATAC-aSP82_KP_Primary_15B Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104508/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159764 Sample Accession: GSM5104508 ID: 305104508 4868. scATAC-aSP81_KP_Male Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159763 Sample Accession: GSM5104507 ID: 305104507 4869. scATAC-aSP72_KPL_Male Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104506/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159762 Sample Accession: GSM5104506 ID: 305104506 4870. scATAC-aSP71_KPL_Primary_13C Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159761 Sample Accession: GSM5104505 ID: 305104505 4871. scATAC-aSP68_KPL_Primary_13B Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104504/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159760 Sample Accession: GSM5104504 ID: 305104504 4872. scATAC-aSP59_KPL_Female Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159759 Sample Accession: GSM5104503 ID: 305104503 4873. bATAC-TKO_LR1_sgSik_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159734 Sample Accession: GSM5104478 ID: 305104478 4874. bATAC-TKO_LR1_sgSik_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104477/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159733 Sample Accession: GSM5104477 ID: 305104477 4875. bATAC-TKO_LR1_sgSik_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159732 Sample Accession: GSM5104476 ID: 305104476 4876. bATAC-TKO_LR1_sgSik_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159731 Sample Accession: GSM5104475 ID: 305104475 4877. bATAC-TKO_LR1_sgSik_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159730 Sample Accession: GSM5104474 ID: 305104474 4878. bATAC-TKO_LR1_sgSik_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159729 Sample Accession: GSM5104473 ID: 305104473 4879. bATAC-TKO_LR1_sgSik_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159728 Sample Accession: GSM5104472 ID: 305104472 4880. bATAC-TKO_LR1_sgSik_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159727 Sample Accession: GSM5104471 ID: 305104471 4881. bATAC-TKO_LR1_sgSafe_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159726 Sample Accession: GSM5104470 ID: 305104470 4882. bATAC-TKO_LR1_sgSafe_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104469/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159725 Sample Accession: GSM5104469 ID: 305104469 4883. bATAC-TKO_LR1_sgSafe_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159724 Sample Accession: GSM5104468 ID: 305104468 4884. bATAC-TKO_LR1_sgSafe_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159723 Sample Accession: GSM5104467 ID: 305104467 4885. bATAC-TKO_LR1_sgSafe_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104466/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159722 Sample Accession: GSM5104466 ID: 305104466 4886. bATAC-TKO_LR1_sgSafe_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104465/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159721 Sample Accession: GSM5104465 ID: 305104465 4887. bATAC-TKO_LR1_sgSafe_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159720 Sample Accession: GSM5104464 ID: 305104464 4888. bATAC-TKO_LR1_sgSafe_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159719 Sample Accession: GSM5104463 ID: 305104463 4889. bATAC-TKO_LR1_sgNuak_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159718 Sample Accession: GSM5104462 ID: 305104462 4890. bATAC-TKO_LR1_sgNuak_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159717 Sample Accession: GSM5104461 ID: 305104461 4891. bATAC-TKO_LR1_sgNuak_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159716 Sample Accession: GSM5104460 ID: 305104460 4892. bATAC-TKO_LR1_sgNuak_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159715 Sample Accession: GSM5104459 ID: 305104459 4893. bATAC-TKO_LR1_sgNuak_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159714 Sample Accession: GSM5104458 ID: 305104458 4894. bATAC-TKO_LR1_sgNuak_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159713 Sample Accession: GSM5104457 ID: 305104457 4895. bATAC-TKO_LR1_sgNuak_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159712 Sample Accession: GSM5104456 ID: 305104456 4896. bATAC-TKO_LR1_sgNuak_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159711 Sample Accession: GSM5104455 ID: 305104455 4897. bATAC-TKO_LR1_sgMark_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159710 Sample Accession: GSM5104454 ID: 305104454 4898. bATAC-TKO_LR1_sgMark_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159709 Sample Accession: GSM5104453 ID: 305104453 4899. bATAC-TKO_LR1_sgMark_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159708 Sample Accession: GSM5104452 ID: 305104452 4900. bATAC-TKO_LR1_sgMark_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159707 Sample Accession: GSM5104451 ID: 305104451 4901. bATAC-TKO_LR1_sgMark_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159706 Sample Accession: GSM5104450 ID: 305104450 4902. bATAC-TKO_LR1_sgMark_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104449/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159705 Sample Accession: GSM5104449 ID: 305104449 4903. bATAC-TKO_LR1_sgMark_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159704 Sample Accession: GSM5104448 ID: 305104448 4904. bATAC-TKO_LR1_sgMark_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104447/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159703 Sample Accession: GSM5104447 ID: 305104447 4905. bATAC-TKO_LR1_sgLkb1_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159702 Sample Accession: GSM5104446 ID: 305104446 4906. bATAC-TKO_LR1_sgLkb1_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159701 Sample Accession: GSM5104445 ID: 305104445 4907. bATAC-TKO_LR1_sgLkb1_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159700 Sample Accession: GSM5104444 ID: 305104444 4908. bATAC-TKO_LR1_sgLkb1_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104443/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159699 Sample Accession: GSM5104443 ID: 305104443 4909. bATAC-TKO_LR1_sgLkb1_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104442/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159698 Sample Accession: GSM5104442 ID: 305104442 4910. bATAC-TKO_LR1_sgLkb1_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104441/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159697 Sample Accession: GSM5104441 ID: 305104441 4911. bATAC-TKO_LR1_sgLkb1_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159696 Sample Accession: GSM5104440 ID: 305104440 4912. bATAC-TKO_LR1_sgLkb1_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104439/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159695 Sample Accession: GSM5104439 ID: 305104439 4913. bATAC-TKO_LR1_sgAmpk_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104438/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159694 Sample Accession: GSM5104438 ID: 305104438 4914. bATAC-TKO_LR1_sgAmpk_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104437/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159693 Sample Accession: GSM5104437 ID: 305104437 4915. bATAC-TKO_LR1_sgAmpk_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104436/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159692 Sample Accession: GSM5104436 ID: 305104436 4916. bATAC-TKO_LR1_sgAmpk_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104435/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159691 Sample Accession: GSM5104435 ID: 305104435 4917. bATAC-TKO_LR1_sgAmpk_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159690 Sample Accession: GSM5104434 ID: 305104434 4918. bATAC-TKO_LR1_sgAmpk_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104433/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159689 Sample Accession: GSM5104433 ID: 305104433 4919. bATAC-TKO_LR1_sgAmpk_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159688 Sample Accession: GSM5104432 ID: 305104432 4920. bATAC-TKO_LR1_sgAmpk_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104431/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159687 Sample Accession: GSM5104431 ID: 305104431 4921. bATAC-TC_LR2_4OHT_6h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159686 Sample Accession: GSM5104430 ID: 305104430 4922. bATAC-TC_LR2_4OHT_6h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104429/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159685 Sample Accession: GSM5104429 ID: 305104429 4923. bATAC-TC_LR2_4OHT_6d_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159684 Sample Accession: GSM5104428 ID: 305104428 4924. bATAC-TC_LR2_4OHT_6d_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159683 Sample Accession: GSM5104427 ID: 305104427 4925. bATAC-TC_LR2_4OHT_4d_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159682 Sample Accession: GSM5104426 ID: 305104426 4926. bATAC-TC_LR2_4OHT_4d_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104425/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159681 Sample Accession: GSM5104425 ID: 305104425 4927. bATAC-TC_LR2_4OHT_48h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159680 Sample Accession: GSM5104424 ID: 305104424 4928. bATAC-TC_LR2_4OHT_48h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159679 Sample Accession: GSM5104423 ID: 305104423 4929. bATAC-TC_LR2_4OHT_36h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159678 Sample Accession: GSM5104422 ID: 305104422 4930. bATAC-TC_LR2_4OHT_36h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159677 Sample Accession: GSM5104421 ID: 305104421 4931. bATAC-TC_LR2_4OHT_24h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159676 Sample Accession: GSM5104420 ID: 305104420 4932. bATAC-TC_LR2_4OHT_24h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159675 Sample Accession: GSM5104419 ID: 305104419 4933. bATAC-TC_LR2_4OHT_12_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159674 Sample Accession: GSM5104418 ID: 305104418 4934. bATAC-TC_LR2_4OHT_12_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159673 Sample Accession: GSM5104417 ID: 305104417 4935. bATAC-TC_LR2_4OHT_0h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159672 Sample Accession: GSM5104416 ID: 305104416 4936. bATAC-TC_LR2_4OHT_0h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159671 Sample Accession: GSM5104415 ID: 305104415 4937. bATAC-TC_LR1_4OHT_6h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159670 Sample Accession: GSM5104414 ID: 305104414 4938. bATAC-TC_LR1_4OHT_6h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159669 Sample Accession: GSM5104413 ID: 305104413 4939. bATAC-TC_LR1_4OHT_6d_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159668 Sample Accession: GSM5104412 ID: 305104412 4940. bATAC-TC_LR1_4OHT_6d_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159667 Sample Accession: GSM5104411 ID: 305104411 4941. bATAC-TC_LR1_4OHT_4d_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159666 Sample Accession: GSM5104410 ID: 305104410 4942. bATAC-TC_LR1_4OHT_4d_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159665 Sample Accession: GSM5104409 ID: 305104409 4943. bATAC-TC_LR1_4OHT_48h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159664 Sample Accession: GSM5104408 ID: 305104408 4944. bATAC-TC_LR1_4OHT_48h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159663 Sample Accession: GSM5104407 ID: 305104407 4945. bATAC-TC_LR1_4OHT_36h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159662 Sample Accession: GSM5104406 ID: 305104406 4946. bATAC-TC_LR1_4OHT_36h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159661 Sample Accession: GSM5104405 ID: 305104405 4947. bATAC-TC_LR1_4OHT_24h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159660 Sample Accession: GSM5104404 ID: 305104404 4948. bATAC-TC_LR1_4OHT_24h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159659 Sample Accession: GSM5104403 ID: 305104403 4949. bATAC-TC_LR1_4OHT_12_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159658 Sample Accession: GSM5104402 ID: 305104402 4950. bATAC-TC_LR1_4OHT_12_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104401/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159657 Sample Accession: GSM5104401 ID: 305104401 4951. bATAC-TC_LR1_4OHT_0h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159656 Sample Accession: GSM5104400 ID: 305104400 4952. bATAC-TC_LR1_4OHT_0h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159655 Sample Accession: GSM5104399 ID: 305104399 4953. bATAC-SOX_LR2_Sox17_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159654 Sample Accession: GSM5104398 ID: 305104398 4954. bATAC-SOX_LR2_Sox17_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159653 Sample Accession: GSM5104397 ID: 305104397 4955. bATAC-SOX_LR2_Sox17_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159652 Sample Accession: GSM5104396 ID: 305104396 4956. bATAC-SOX_LR2_Sox17_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159651 Sample Accession: GSM5104395 ID: 305104395 4957. bATAC-SOX_LR2_sgSox17_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159650 Sample Accession: GSM5104394 ID: 305104394 4958. bATAC-SOX_LR2_sgSox17_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159649 Sample Accession: GSM5104393 ID: 305104393 4959. bATAC-SOX_LR2_sgSox17_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159648 Sample Accession: GSM5104392 ID: 305104392 4960. bATAC-SOX_LR2_sgSox17_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159647 Sample Accession: GSM5104391 ID: 305104391 4961. bATAC-SOX_LR2_sgSox17_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159646 Sample Accession: GSM5104390 ID: 305104390 4962. bATAC-SOX_LR2_sgSox17_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159645 Sample Accession: GSM5104389 ID: 305104389 4963. bATAC-SOX_LR2_sgSox17_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104388/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159644 Sample Accession: GSM5104388 ID: 305104388 4964. bATAC-SOX_LR2_sgSox17_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104387/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159643 Sample Accession: GSM5104387 ID: 305104387 4965. bATAC-SOX_LR2_sgSafe_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159642 Sample Accession: GSM5104386 ID: 305104386 4966. bATAC-SOX_LR2_sgSafe_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159641 Sample Accession: GSM5104385 ID: 305104385 4967. bATAC-SOX_LR2_sgSafe_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159640 Sample Accession: GSM5104384 ID: 305104384 4968. bATAC-SOX_LR2_sgSafe_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159639 Sample Accession: GSM5104383 ID: 305104383 4969. bATAC-SOX_LR2_GFP_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159638 Sample Accession: GSM5104382 ID: 305104382 4970. bATAC-SOX_LR2_GFP_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159637 Sample Accession: GSM5104381 ID: 305104381 4971. bATAC-SOX_LR2_GFP_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159636 Sample Accession: GSM5104380 ID: 305104380 4972. bATAC-SOX_LR2_GFP_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159635 Sample Accession: GSM5104379 ID: 305104379 4973. bATAC-SOX_LR1_sgSox17_2_Sox17_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159634 Sample Accession: GSM5104378 ID: 305104378 4974. bATAC-SOX_LR1_sgSox17_2_Sox17_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159633 Sample Accession: GSM5104377 ID: 305104377 4975. bATAC-SOX_LR1_sgSox17_2_Sox17_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159632 Sample Accession: GSM5104376 ID: 305104376 4976. bATAC-SOX_LR1_sgSox17_2_Sox17_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159631 Sample Accession: GSM5104375 ID: 305104375 4977. bATAC-SOX_LR1_sgSox17_2_BFP_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159630 Sample Accession: GSM5104374 ID: 305104374 4978. bATAC-SOX_LR1_sgSox17_2_BFP_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159629 Sample Accession: GSM5104373 ID: 305104373 4979. bATAC-SOX_LR1_sgSox17_2_BFP_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159628 Sample Accession: GSM5104372 ID: 305104372 4980. bATAC-SOX_LR1_sgSox17_2_BFP_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159627 Sample Accession: GSM5104371 ID: 305104371 4981. bATAC-SOX_LR1_sgSafe_1_BFP_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104370/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159626 Sample Accession: GSM5104370 ID: 305104370 4982. bATAC-SOX_LR1_sgSafe_1_BFP_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104369/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159625 Sample Accession: GSM5104369 ID: 305104369 4983. bATAC-SOX_LR1_sgSafe_1_BFP_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104368/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159624 Sample Accession: GSM5104368 ID: 305104368 4984. bATAC-SOX_LR1_sgSafe_1_BFP_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159623 Sample Accession: GSM5104367 ID: 305104367 4985. bATAC-SIK_LR1_sgSik3_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159622 Sample Accession: GSM5104366 ID: 305104366 4986. bATAC-SIK_LR1_sgSik3_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159621 Sample Accession: GSM5104365 ID: 305104365 4987. bATAC-SIK_LR1_sgSik3_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159620 Sample Accession: GSM5104364 ID: 305104364 4988. bATAC-SIK_LR1_sgSik3_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104363/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159619 Sample Accession: GSM5104363 ID: 305104363 4989. bATAC-SIK_LR1_sgSik3_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104362/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159618 Sample Accession: GSM5104362 ID: 305104362 4990. bATAC-SIK_LR1_sgSik3_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104361/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159617 Sample Accession: GSM5104361 ID: 305104361 4991. bATAC-SIK_LR1_sgSik3_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104360/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159616 Sample Accession: GSM5104360 ID: 305104360 4992. bATAC-SIK_LR1_sgSik3_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159615 Sample Accession: GSM5104359 ID: 305104359 4993. bATAC-SIK_LR1_sgSik2_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159614 Sample Accession: GSM5104358 ID: 305104358 4994. bATAC-SIK_LR1_sgSik2_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104357/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159613 Sample Accession: GSM5104357 ID: 305104357 4995. bATAC-SIK_LR1_sgSik2_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104356/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159612 Sample Accession: GSM5104356 ID: 305104356 4996. bATAC-SIK_LR1_sgSik2_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104355/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159611 Sample Accession: GSM5104355 ID: 305104355 4997. bATAC-SIK_LR1_sgSik2_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104354/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159610 Sample Accession: GSM5104354 ID: 305104354 4998. bATAC-SIK_LR1_sgSik2_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104353/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159609 Sample Accession: GSM5104353 ID: 305104353 4999. bATAC-SIK_LR1_sgSik2_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104352/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159608 Sample Accession: GSM5104352 ID: 305104352 5000. bATAC-SIK_LR1_sgSik2_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160032 Sample Accession: GSM5104351 ID: 305104351 5001. bATAC-SIK_LR1_sgSik1_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160031 Sample Accession: GSM5104350 ID: 305104350 5002. bATAC-SIK_LR1_sgSik1_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104349/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160030 Sample Accession: GSM5104349 ID: 305104349 5003. bATAC-SIK_LR1_sgSik1_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160029 Sample Accession: GSM5104348 ID: 305104348 5004. bATAC-SIK_LR1_sgSik1_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104347/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160028 Sample Accession: GSM5104347 ID: 305104347 5005. bATAC-SIK_LR1_sgSik1_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160027 Sample Accession: GSM5104346 ID: 305104346 5006. bATAC-SIK_LR1_sgSik1_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160026 Sample Accession: GSM5104345 ID: 305104345 5007. bATAC-SIK_LR1_sgSik1_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160025 Sample Accession: GSM5104344 ID: 305104344 5008. bATAC-SIK_LR1_sgSik1_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160024 Sample Accession: GSM5104343 ID: 305104343 5009. bATAC-SIK_LR1_sgSik_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104342/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160023 Sample Accession: GSM5104342 ID: 305104342 5010. bATAC-SIK_LR1_sgSik_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104341/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160022 Sample Accession: GSM5104341 ID: 305104341 5011. bATAC-SIK_LR1_sgSik_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160021 Sample Accession: GSM5104340 ID: 305104340 5012. bATAC-SIK_LR1_sgSik_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160020 Sample Accession: GSM5104339 ID: 305104339 5013. bATAC-SIK_LR1_sgSik_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160019 Sample Accession: GSM5104338 ID: 305104338 5014. bATAC-SIK_LR1_sgSik_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160018 Sample Accession: GSM5104337 ID: 305104337 5015. bATAC-SIK_LR1_sgSik_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160017 Sample Accession: GSM5104336 ID: 305104336 5016. bATAC-SIK_LR1_sgSik_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160016 Sample Accession: GSM5104335 ID: 305104335 5017. bATAC-SIK_LR1_sgSafe_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104334/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160015 Sample Accession: GSM5104334 ID: 305104334 5018. bATAC-SIK_LR1_sgSafe_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104333/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160014 Sample Accession: GSM5104333 ID: 305104333 5019. bATAC-SIK_LR1_sgSafe_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160013 Sample Accession: GSM5104332 ID: 305104332 5020. bATAC-SIK_LR1_sgSafe_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104331/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160012 Sample Accession: GSM5104331 ID: 305104331 5021. bATAC-SIK_LR1_sgSafe_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160011 Sample Accession: GSM5104330 ID: 305104330 5022. bATAC-SIK_LR1_sgSafe_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160010 Sample Accession: GSM5104329 ID: 305104329 5023. bATAC-SIK_LR1_sgSafe_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160009 Sample Accession: GSM5104328 ID: 305104328 5024. bATAC-SIK_LR1_sgSafe_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160008 Sample Accession: GSM5104327 ID: 305104327 5025. bATAC-SIK_LR1_sgLkb1_2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160007 Sample Accession: GSM5104326 ID: 305104326 5026. bATAC-SIK_LR1_sgLkb1_2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104325/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160006 Sample Accession: GSM5104325 ID: 305104325 5027. bATAC-SIK_LR1_sgLkb1_2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104324/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160005 Sample Accession: GSM5104324 ID: 305104324 5028. bATAC-SIK_LR1_sgLkb1_2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104323/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160004 Sample Accession: GSM5104323 ID: 305104323 5029. bATAC-SIK_LR1_sgLkb1_1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160003 Sample Accession: GSM5104322 ID: 305104322 5030. bATAC-SIK_LR1_sgLkb1_1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160002 Sample Accession: GSM5104321 ID: 305104321 5031. bATAC-SIK_LR1_sgLkb1_1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160001 Sample Accession: GSM5104320 ID: 305104320 5032. bATAC-SIK_LR1_sgLkb1_1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10160000 Sample Accession: GSM5104319 ID: 305104319 5033. bATAC-Mouse_KPL_Primary_5B_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159999 Sample Accession: GSM5104318 ID: 305104318 5034. bATAC-Mouse_KPL_Primary_5B_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159998 Sample Accession: GSM5104317 ID: 305104317 5035. bATAC-Mouse_KPL_Primary_5A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159997 Sample Accession: GSM5104316 ID: 305104316 5036. bATAC-Mouse_KPL_Primary_5A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159996 Sample Accession: GSM5104315 ID: 305104315 5037. bATAC-Mouse_KPL_Primary_4C_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159995 Sample Accession: GSM5104314 ID: 305104314 5038. bATAC-Mouse_KPL_Primary_4C_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159994 Sample Accession: GSM5104313 ID: 305104313 5039. bATAC-Mouse_KPL_Primary_4B_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159993 Sample Accession: GSM5104312 ID: 305104312 5040. bATAC-Mouse_KPL_Primary_4B_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159992 Sample Accession: GSM5104311 ID: 305104311 5041. bATAC-Mouse_KPL_Primary_4A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159991 Sample Accession: GSM5104310 ID: 305104310 5042. bATAC-Mouse_KPL_Primary_4A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159990 Sample Accession: GSM5104309 ID: 305104309 5043. bATAC-Mouse_KPL_Primary_13D_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159989 Sample Accession: GSM5104308 ID: 305104308 5044. bATAC-Mouse_KPL_Primary_13D_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159988 Sample Accession: GSM5104307 ID: 305104307 5045. bATAC-Mouse_KPL_Primary_13C_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159987 Sample Accession: GSM5104306 ID: 305104306 5046. bATAC-Mouse_KPL_Primary_13C_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159986 Sample Accession: GSM5104305 ID: 305104305 5047. bATAC-Mouse_KPL_Primary_13B_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159985 Sample Accession: GSM5104304 ID: 305104304 5048. bATAC-Mouse_KPL_Primary_13B_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159984 Sample Accession: GSM5104303 ID: 305104303 5049. bATAC-Mouse_KPL_Primary_13A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159983 Sample Accession: GSM5104302 ID: 305104302 5050. bATAC-Mouse_KPL_Primary_13A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159982 Sample Accession: GSM5104301 ID: 305104301 5051. bATAC-Mouse_KPL_Primary_11B_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159981 Sample Accession: GSM5104300 ID: 305104300 5052. bATAC-Mouse_KPL_Primary_11B_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159980 Sample Accession: GSM5104299 ID: 305104299 5053. bATAC-Mouse_KPL_Primary_11A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159979 Sample Accession: GSM5104298 ID: 305104298 5054. bATAC-Mouse_KPL_Primary_11A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159978 Sample Accession: GSM5104297 ID: 305104297 5055. bATAC-Mouse_KPL_Primary_10E_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159977 Sample Accession: GSM5104296 ID: 305104296 5056. bATAC-Mouse_KPL_Primary_10E_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159976 Sample Accession: GSM5104295 ID: 305104295 5057. bATAC-Mouse_KPL_Primary_10B_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159975 Sample Accession: GSM5104294 ID: 305104294 5058. bATAC-Mouse_KPL_Primary_10B_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159974 Sample Accession: GSM5104293 ID: 305104293 5059. bATAC-Mouse_KPL_Metastasis_5C_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159973 Sample Accession: GSM5104292 ID: 305104292 5060. bATAC-Mouse_KPL_Metastasis_5C_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159972 Sample Accession: GSM5104291 ID: 305104291 5061. bATAC-Mouse_KPL_Metastasis_13G_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159971 Sample Accession: GSM5104290 ID: 305104290 5062. bATAC-Mouse_KPL_Metastasis_13G_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159970 Sample Accession: GSM5104289 ID: 305104289 5063. bATAC-Mouse_KPL_Metastasis_13F_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159969 Sample Accession: GSM5104288 ID: 305104288 5064. bATAC-Mouse_KPL_Metastasis_13F_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159968 Sample Accession: GSM5104287 ID: 305104287 5065. bATAC-Mouse_KPL_Metastasis_10F_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159967 Sample Accession: GSM5104286 ID: 305104286 5066. bATAC-Mouse_KPL_Metastasis_10F_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159966 Sample Accession: GSM5104285 ID: 305104285 5067. bATAC-Mouse_KPL_Metastasis_10A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159965 Sample Accession: GSM5104284 ID: 305104284 5068. bATAC-Mouse_KPL_Metastasis_10A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159964 Sample Accession: GSM5104283 ID: 305104283 5069. bATAC-Mouse_KP_Primary_7C_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159963 Sample Accession: GSM5104282 ID: 305104282 5070. bATAC-Mouse_KP_Primary_7C_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159962 Sample Accession: GSM5104281 ID: 305104281 5071. bATAC-Mouse_KP_Primary_7B_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159961 Sample Accession: GSM5104280 ID: 305104280 5072. bATAC-Mouse_KP_Primary_7B_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159960 Sample Accession: GSM5104279 ID: 305104279 5073. bATAC-Mouse_KP_Primary_7A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159959 Sample Accession: GSM5104278 ID: 305104278 5074. bATAC-Mouse_KP_Primary_7A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159958 Sample Accession: GSM5104277 ID: 305104277 5075. bATAC-Mouse_KP_Primary_22A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159957 Sample Accession: GSM5104276 ID: 305104276 5076. bATAC-Mouse_KP_Primary_22A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159956 Sample Accession: GSM5104275 ID: 305104275 5077. bATAC-Mouse_KP_Primary_1A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159955 Sample Accession: GSM5104274 ID: 305104274 5078. bATAC-Mouse_KP_Primary_1A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159954 Sample Accession: GSM5104273 ID: 305104273 5079. bATAC-Mouse_KP_Primary_18A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159953 Sample Accession: GSM5104272 ID: 305104272 5080. bATAC-Mouse_KP_Primary_18A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159952 Sample Accession: GSM5104271 ID: 305104271 5081. bATAC-Mouse_KP_Primary_17C_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159951 Sample Accession: GSM5104270 ID: 305104270 5082. bATAC-Mouse_KP_Primary_17C_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159950 Sample Accession: GSM5104269 ID: 305104269 5083. bATAC-Mouse_KP_Primary_16B_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159949 Sample Accession: GSM5104268 ID: 305104268 5084. bATAC-Mouse_KP_Primary_16B_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159948 Sample Accession: GSM5104267 ID: 305104267 5085. bATAC-Mouse_KP_Primary_16A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159947 Sample Accession: GSM5104266 ID: 305104266 5086. bATAC-Mouse_KP_Primary_16A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159946 Sample Accession: GSM5104265 ID: 305104265 5087. bATAC-Mouse_KP_Primary_15C_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159945 Sample Accession: GSM5104264 ID: 305104264 5088. bATAC-Mouse_KP_Primary_15C_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159944 Sample Accession: GSM5104263 ID: 305104263 5089. bATAC-Mouse_KP_Primary_14B_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159943 Sample Accession: GSM5104262 ID: 305104262 5090. bATAC-Mouse_KP_Primary_14B_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159942 Sample Accession: GSM5104261 ID: 305104261 5091. bATAC-Mouse_KP_Primary_14A_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159941 Sample Accession: GSM5104260 ID: 305104260 5092. bATAC-Mouse_KP_Primary_14A_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159940 Sample Accession: GSM5104259 ID: 305104259 5093. bATAC-Mouse_KP_Metastasis_21C_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159939 Sample Accession: GSM5104258 ID: 305104258 5094. bATAC-Mouse_KP_Metastasis_21C_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159938 Sample Accession: GSM5104257 ID: 305104257 5095. bATAC-Mouse_KP_Metastasis_17F_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159937 Sample Accession: GSM5104256 ID: 305104256 5096. bATAC-Mouse_KP_Metastasis_17F_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159936 Sample Accession: GSM5104255 ID: 305104255 5097. bATAC-Mouse_KP_Metastasis_17E_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159935 Sample Accession: GSM5104254 ID: 305104254 5098. bATAC-Mouse_KP_Metastasis_17E_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159934 Sample Accession: GSM5104253 ID: 305104253 5099. bATAC-Mouse_KP_Metastasis_15D_Rep2 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159933 Sample Accession: GSM5104252 ID: 305104252 5100. bATAC-Mouse_KP_Metastasis_15D_Rep1 Organism: Mus musculus Source name: Mouse lung adenocarcinoma primary tumors and metastases Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159932 Sample Accession: GSM5104251 ID: 305104251 5101. bATAC-Initial_LU2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159931 Sample Accession: GSM5104250 ID: 305104250 5102. bATAC-Initial_LU2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159930 Sample Accession: GSM5104249 ID: 305104249 5103. bATAC-Initial_LU2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159929 Sample Accession: GSM5104248 ID: 305104248 5104. bATAC-Initial_LU2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159928 Sample Accession: GSM5104247 ID: 305104247 5105. bATAC-Initial_LU1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159927 Sample Accession: GSM5104246 ID: 305104246 5106. bATAC-Initial_LU1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159926 Sample Accession: GSM5104245 ID: 305104245 5107. bATAC-Initial_LU1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159925 Sample Accession: GSM5104244 ID: 305104244 5108. bATAC-Initial_LU1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159924 Sample Accession: GSM5104243 ID: 305104243 5109. bATAC-Initial_LR2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159923 Sample Accession: GSM5104242 ID: 305104242 5110. bATAC-Initial_LR2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159922 Sample Accession: GSM5104241 ID: 305104241 5111. bATAC-Initial_LR2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159921 Sample Accession: GSM5104240 ID: 305104240 5112. bATAC-Initial_LR2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159920 Sample Accession: GSM5104239 ID: 305104239 5113. bATAC-Initial_LR1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159919 Sample Accession: GSM5104238 ID: 305104238 5114. bATAC-Initial_LR1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159918 Sample Accession: GSM5104237 ID: 305104237 5115. bATAC-Initial_LR1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159917 Sample Accession: GSM5104236 ID: 305104236 5116. bATAC-Initial_LR1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159916 Sample Accession: GSM5104235 ID: 305104235 5117. bATAC-CMTC_LR1_sgTrim28_4OHT_48h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159867 Sample Accession: GSM5104186 ID: 305104186 5118. bATAC-CMTC_LR1_sgTrim28_4OHT_48h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159866 Sample Accession: GSM5104185 ID: 305104185 5119. bATAC-CMTC_LR1_sgTrim28_4OHT_24h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159865 Sample Accession: GSM5104184 ID: 305104184 5120. bATAC-CMTC_LR1_sgTrim28_4OHT_24h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159864 Sample Accession: GSM5104183 ID: 305104183 5121. bATAC-CMTC_LR1_sgTrim28_4OHT_12h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159863 Sample Accession: GSM5104182 ID: 305104182 5122. bATAC-CMTC_LR1_sgTrim28_4OHT_12h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159862 Sample Accession: GSM5104181 ID: 305104181 5123. bATAC-CMTC_LR1_sgTrim28_4OHT_0h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159861 Sample Accession: GSM5104180 ID: 305104180 5124. bATAC-CMTC_LR1_sgTrim28_4OHT_0h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159860 Sample Accession: GSM5104179 ID: 305104179 5125. bATAC-CMTC_LR1_sgSuz12_4OHT_48h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159859 Sample Accession: GSM5104178 ID: 305104178 5126. bATAC-CMTC_LR1_sgSuz12_4OHT_48h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159858 Sample Accession: GSM5104177 ID: 305104177 5127. bATAC-CMTC_LR1_sgSuz12_4OHT_24h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159857 Sample Accession: GSM5104176 ID: 305104176 5128. bATAC-CMTC_LR1_sgSuz12_4OHT_24h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159856 Sample Accession: GSM5104175 ID: 305104175 5129. bATAC-CMTC_LR1_sgSuz12_4OHT_12h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159855 Sample Accession: GSM5104174 ID: 305104174 5130. bATAC-CMTC_LR1_sgSuz12_4OHT_12h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159854 Sample Accession: GSM5104173 ID: 305104173 5131. bATAC-CMTC_LR1_sgSuz12_4OHT_0h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159853 Sample Accession: GSM5104172 ID: 305104172 5132. bATAC-CMTC_LR1_sgSuz12_4OHT_0h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159852 Sample Accession: GSM5104171 ID: 305104171 5133. bATAC-CMTC_LR1_sgSuv39h1_4OHT_48h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159851 Sample Accession: GSM5104170 ID: 305104170 5134. bATAC-CMTC_LR1_sgSuv39h1_4OHT_48h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159850 Sample Accession: GSM5104169 ID: 305104169 5135. bATAC-CMTC_LR1_sgSuv39h1_4OHT_24h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159849 Sample Accession: GSM5104168 ID: 305104168 5136. bATAC-CMTC_LR1_sgSuv39h1_4OHT_24h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159848 Sample Accession: GSM5104167 ID: 305104167 5137. bATAC-CMTC_LR1_sgSuv39h1_4OHT_12h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159847 Sample Accession: GSM5104166 ID: 305104166 5138. bATAC-CMTC_LR1_sgSuv39h1_4OHT_12h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159846 Sample Accession: GSM5104165 ID: 305104165 5139. bATAC-CMTC_LR1_sgSuv39h1_4OHT_0h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159845 Sample Accession: GSM5104164 ID: 305104164 5140. bATAC-CMTC_LR1_sgSuv39h1_4OHT_0h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159844 Sample Accession: GSM5104163 ID: 305104163 5141. bATAC-CMTC_LR1_sgSafe_4OHT_48h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159843 Sample Accession: GSM5104162 ID: 305104162 5142. bATAC-CMTC_LR1_sgSafe_4OHT_48h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159842 Sample Accession: GSM5104161 ID: 305104161 5143. bATAC-CMTC_LR1_sgSafe_4OHT_24h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159841 Sample Accession: GSM5104160 ID: 305104160 5144. bATAC-CMTC_LR1_sgSafe_4OHT_24h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159840 Sample Accession: GSM5104159 ID: 305104159 5145. bATAC-CMTC_LR1_sgSafe_4OHT_12h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159839 Sample Accession: GSM5104158 ID: 305104158 5146. bATAC-CMTC_LR1_sgSafe_4OHT_12h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159838 Sample Accession: GSM5104157 ID: 305104157 5147. bATAC-CMTC_LR1_sgSafe_4OHT_0h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159837 Sample Accession: GSM5104156 ID: 305104156 5148. bATAC-CMTC_LR1_sgSafe_4OHT_0h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159836 Sample Accession: GSM5104155 ID: 305104155 5149. bATAC-CMTC_LR1_sgLkb1_4OHT_48h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159835 Sample Accession: GSM5104154 ID: 305104154 5150. bATAC-CMTC_LR1_sgLkb1_4OHT_48h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159834 Sample Accession: GSM5104153 ID: 305104153 5151. bATAC-CMTC_LR1_sgLkb1_4OHT_24h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159833 Sample Accession: GSM5104152 ID: 305104152 5152. bATAC-CMTC_LR1_sgLkb1_4OHT_24h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159832 Sample Accession: GSM5104151 ID: 305104151 5153. bATAC-CMTC_LR1_sgLkb1_4OHT_12h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159831 Sample Accession: GSM5104150 ID: 305104150 5154. bATAC-CMTC_LR1_sgLkb1_4OHT_12h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159830 Sample Accession: GSM5104149 ID: 305104149 5155. bATAC-CMTC_LR1_sgLkb1_4OHT_0h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159829 Sample Accession: GSM5104148 ID: 305104148 5156. bATAC-CMTC_LR1_sgLkb1_4OHT_0h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159828 Sample Accession: GSM5104147 ID: 305104147 5157. bATAC-CMTC_LR1_sgEed_4OHT_48h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159827 Sample Accession: GSM5104146 ID: 305104146 5158. bATAC-CMTC_LR1_sgEed_4OHT_48h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159826 Sample Accession: GSM5104145 ID: 305104145 5159. bATAC-CMTC_LR1_sgEed_4OHT_24h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159825 Sample Accession: GSM5104144 ID: 305104144 5160. bATAC-CMTC_LR1_sgEed_4OHT_24h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159824 Sample Accession: GSM5104143 ID: 305104143 5161. bATAC-CMTC_LR1_sgEed_4OHT_12h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159823 Sample Accession: GSM5104142 ID: 305104142 5162. bATAC-CMTC_LR1_sgEed_4OHT_12h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159822 Sample Accession: GSM5104141 ID: 305104141 5163. bATAC-CMTC_LR1_sgEed_4OHT_0h_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159821 Sample Accession: GSM5104140 ID: 305104140 5164. bATAC-CMTC_LR1_sgEed_4OHT_0h_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159820 Sample Accession: GSM5104139 ID: 305104139 5165. bATAC-CM_LR1_sgTrim28_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159819 Sample Accession: GSM5104138 ID: 305104138 5166. bATAC-CM_LR1_sgTrim28_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159818 Sample Accession: GSM5104137 ID: 305104137 5167. bATAC-CM_LR1_sgTrim28_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159817 Sample Accession: GSM5104136 ID: 305104136 5168. bATAC-CM_LR1_sgTrim28_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159816 Sample Accession: GSM5104135 ID: 305104135 5169. bATAC-CM_LR1_sgSuz12_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159815 Sample Accession: GSM5104134 ID: 305104134 5170. bATAC-CM_LR1_sgSuz12_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159814 Sample Accession: GSM5104133 ID: 305104133 5171. bATAC-CM_LR1_sgSuz12_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159813 Sample Accession: GSM5104132 ID: 305104132 5172. bATAC-CM_LR1_sgSuz12_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159812 Sample Accession: GSM5104131 ID: 305104131 5173. bATAC-CM_LR1_sgSuv39h1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159811 Sample Accession: GSM5104130 ID: 305104130 5174. bATAC-CM_LR1_sgSuv39h1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159810 Sample Accession: GSM5104129 ID: 305104129 5175. bATAC-CM_LR1_sgSuv39h1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159809 Sample Accession: GSM5104128 ID: 305104128 5176. bATAC-CM_LR1_sgSuv39h1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104127/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159784 Sample Accession: GSM5104127 ID: 305104127 5177. bATAC-CM_LR1_sgSmchd1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159783 Sample Accession: GSM5104126 ID: 305104126 5178. bATAC-CM_LR1_sgSmchd1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159782 Sample Accession: GSM5104125 ID: 305104125 5179. bATAC-CM_LR1_sgSmchd1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159781 Sample Accession: GSM5104124 ID: 305104124 5180. bATAC-CM_LR1_sgSmchd1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159780 Sample Accession: GSM5104123 ID: 305104123 5181. bATAC-CM_LR1_sgSmarce1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159779 Sample Accession: GSM5104122 ID: 305104122 5182. bATAC-CM_LR1_sgSmarce1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159778 Sample Accession: GSM5104121 ID: 305104121 5183. bATAC-CM_LR1_sgSmarce1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159777 Sample Accession: GSM5104120 ID: 305104120 5184. bATAC-CM_LR1_sgSmarce1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159776 Sample Accession: GSM5104119 ID: 305104119 5185. bATAC-CM_LR1_sgSafe_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159775 Sample Accession: GSM5104118 ID: 305104118 5186. bATAC-CM_LR1_sgSafe_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159774 Sample Accession: GSM5104117 ID: 305104117 5187. bATAC-CM_LR1_sgSafe_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159773 Sample Accession: GSM5104116 ID: 305104116 5188. bATAC-CM_LR1_sgLkb1_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159593 Sample Accession: GSM5104115 ID: 305104115 5189. bATAC-CM_LR1_sgLkb1_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159592 Sample Accession: GSM5104114 ID: 305104114 5190. bATAC-CM_LR1_sgLkb1_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159772 Sample Accession: GSM5104113 ID: 305104113 5191. bATAC-CM_LR1_sgLkb1_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159771 Sample Accession: GSM5104112 ID: 305104112 5192. bATAC-CM_LR1_sgEed_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159770 Sample Accession: GSM5104111 ID: 305104111 5193. bATAC-CM_LR1_sgEed_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159769 Sample Accession: GSM5104110 ID: 305104110 5194. bATAC-CM_LR1_sgEed_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159607 Sample Accession: GSM5104109 ID: 305104109 5195. bATAC-CM_LR1_sgEed_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159606 Sample Accession: GSM5104108 ID: 305104108 5196. bATAC-CM_LR1_sgDnmt3a_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159605 Sample Accession: GSM5104107 ID: 305104107 5197. bATAC-CM_LR1_sgDnmt3a_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104106/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159604 Sample Accession: GSM5104106 ID: 305104106 5198. bATAC-CM_LR1_sgDnmt3a_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159603 Sample Accession: GSM5104105 ID: 305104105 5199. bATAC-CM_LR1_sgDnmt3a_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159602 Sample Accession: GSM5104104 ID: 305104104 5200. bATAC-CM_LR1_sgCited2_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159601 Sample Accession: GSM5104103 ID: 305104103 5201. bATAC-CM_LR1_sgCited2_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159600 Sample Accession: GSM5104102 ID: 305104102 5202. bATAC-CM_LR1_sgCited2_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104101/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159599 Sample Accession: GSM5104101 ID: 305104101 5203. bATAC-CM_LR1_sgCited2_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159598 Sample Accession: GSM5104100 ID: 305104100 5204. bATAC-CM_LR1_sgArid1a_vehicle_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159597 Sample Accession: GSM5104099 ID: 305104099 5205. bATAC-CM_LR1_sgArid1a_vehicle_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159596 Sample Accession: GSM5104098 ID: 305104098 5206. bATAC-CM_LR1_sgArid1a_4OHT_Rep2 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159595 Sample Accession: GSM5104097 ID: 305104097 5207. bATAC-CM_LR1_sgArid1a_4OHT_Rep1 Organism: Mus musculus Source name: Immortalized cell line Platform: GPL21626 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159594 Sample Accession: GSM5104096 ID: 305104096 5208. bATAC-Human_H460_LKB1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159915 Sample Accession: GSM5104234 ID: 305104234 5209. bATAC-Human_H460_LKB1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104233/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159914 Sample Accession: GSM5104233 ID: 305104233 5210. bATAC-Human_H460_KEAP1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159913 Sample Accession: GSM5104232 ID: 305104232 5211. bATAC-Human_H460_KEAP1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159912 Sample Accession: GSM5104231 ID: 305104231 5212. bATAC-Human_H460_GFP_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159911 Sample Accession: GSM5104230 ID: 305104230 5213. bATAC-Human_H460_GFP_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104229/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159910 Sample Accession: GSM5104229 ID: 305104229 5214. bATAC-Human_H358_LKB1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104228/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159909 Sample Accession: GSM5104228 ID: 305104228 5215. bATAC-Human_H358_LKB1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104227/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159908 Sample Accession: GSM5104227 ID: 305104227 5216. bATAC-Human_H358_KEAP1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104226/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159907 Sample Accession: GSM5104226 ID: 305104226 5217. bATAC-Human_H358_KEAP1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104225/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159906 Sample Accession: GSM5104225 ID: 305104225 5218. bATAC-Human_H358_GFP_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104224/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159905 Sample Accession: GSM5104224 ID: 305104224 5219. bATAC-Human_H358_GFP_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159904 Sample Accession: GSM5104223 ID: 305104223 5220. bATAC-Human_H2009_LKB1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159903 Sample Accession: GSM5104222 ID: 305104222 5221. bATAC-Human_H2009_LKB1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159902 Sample Accession: GSM5104221 ID: 305104221 5222. bATAC-Human_H2009_KEAP1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159901 Sample Accession: GSM5104220 ID: 305104220 5223. bATAC-Human_H2009_KEAP1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159900 Sample Accession: GSM5104219 ID: 305104219 5224. bATAC-Human_H2009_GFP_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159899 Sample Accession: GSM5104218 ID: 305104218 5225. bATAC-Human_H2009_GFP_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159898 Sample Accession: GSM5104217 ID: 305104217 5226. bATAC-Human_H1975_LKB1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159897 Sample Accession: GSM5104216 ID: 305104216 5227. bATAC-Human_H1975_LKB1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159896 Sample Accession: GSM5104215 ID: 305104215 5228. bATAC-Human_H1975_KEAP1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159895 Sample Accession: GSM5104214 ID: 305104214 5229. bATAC-Human_H1975_KEAP1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159894 Sample Accession: GSM5104213 ID: 305104213 5230. bATAC-Human_H1975_GFP_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159893 Sample Accession: GSM5104212 ID: 305104212 5231. bATAC-Human_H1975_GFP_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159892 Sample Accession: GSM5104211 ID: 305104211 5232. bATAC-Human_H1650_LKB1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159891 Sample Accession: GSM5104210 ID: 305104210 5233. bATAC-Human_H1650_LKB1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159890 Sample Accession: GSM5104209 ID: 305104209 5234. bATAC-Human_H1650_KEAP1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159889 Sample Accession: GSM5104208 ID: 305104208 5235. bATAC-Human_H1650_KEAP1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104207/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159888 Sample Accession: GSM5104207 ID: 305104207 5236. bATAC-Human_H1650_GFP_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159887 Sample Accession: GSM5104206 ID: 305104206 5237. bATAC-Human_H1650_GFP_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159886 Sample Accession: GSM5104205 ID: 305104205 5238. bATAC-Human_H1437_LKB1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159885 Sample Accession: GSM5104204 ID: 305104204 5239. bATAC-Human_H1437_LKB1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159884 Sample Accession: GSM5104203 ID: 305104203 5240. bATAC-Human_H1437_KEAP1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159883 Sample Accession: GSM5104202 ID: 305104202 5241. bATAC-Human_H1437_KEAP1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159882 Sample Accession: GSM5104201 ID: 305104201 5242. bATAC-Human_H1437_GFP_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104200/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159881 Sample Accession: GSM5104200 ID: 305104200 5243. bATAC-Human_H1437_GFP_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104199/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159880 Sample Accession: GSM5104199 ID: 305104199 5244. bATAC-Human_H1355_LKB1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159879 Sample Accession: GSM5104198 ID: 305104198 5245. bATAC-Human_H1355_LKB1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159878 Sample Accession: GSM5104197 ID: 305104197 5246. bATAC-Human_H1355_KEAP1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159877 Sample Accession: GSM5104196 ID: 305104196 5247. bATAC-Human_H1355_KEAP1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159876 Sample Accession: GSM5104195 ID: 305104195 5248. bATAC-Human_H1355_GFP_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159875 Sample Accession: GSM5104194 ID: 305104194 5249. bATAC-Human_H1355_GFP_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159874 Sample Accession: GSM5104193 ID: 305104193 5250. bATAC-Human_A549_LKB1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159873 Sample Accession: GSM5104192 ID: 305104192 5251. bATAC-Human_A549_LKB1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159872 Sample Accession: GSM5104191 ID: 305104191 5252. bATAC-Human_A549_KEAP1_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159871 Sample Accession: GSM5104190 ID: 305104190 5253. bATAC-Human_A549_KEAP1_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159870 Sample Accession: GSM5104189 ID: 305104189 5254. bATAC-Human_A549_GFP_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159869 Sample Accession: GSM5104188 ID: 305104188 5255. bATAC-Human_A549_GFP_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE167381 FTP download: GEO (BW, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5104nnn/GSM5104187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10159868 Sample Accession: GSM5104187 ID: 305104187 5256. ATAC-seq_shNC_rep3 Organism: Mus musculus Source name: ATAC-seq_shNC Platform: GPL21273 Series: GSE154952 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4684nnn/GSM4684876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8804941 Sample Accession: GSM4684876 ID: 304684876 5257. ATAC-seq_shNC_rep2 Organism: Mus musculus Source name: ATAC-seq_shNC Platform: GPL21273 Series: GSE154952 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4684nnn/GSM4684875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8804940 Sample Accession: GSM4684875 ID: 304684875 5258. ATAC-seq_shNC_rep1 Organism: Mus musculus Source name: ATAC-seq_shNC Platform: GPL21273 Series: GSE154952 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4684nnn/GSM4684874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8804939 Sample Accession: GSM4684874 ID: 304684874 5259. ATAC-seq_shFto_rep3 Organism: Mus musculus Source name: ATAC-seq_shFto Platform: GPL21273 Series: GSE154952 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4684nnn/GSM4684873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8804938 Sample Accession: GSM4684873 ID: 304684873 5260. ATAC-seq_shFto_rep2 Organism: Mus musculus Source name: ATAC-seq_shFto Platform: GPL21273 Series: GSE154952 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4684nnn/GSM4684872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8804937 Sample Accession: GSM4684872 ID: 304684872 5261. ATAC-seq_shFto_rep1 Organism: Mus musculus Source name: ATAC-seq_shFto Platform: GPL21273 Series: GSE154952 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4684nnn/GSM4684871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8804936 Sample Accession: GSM4684871 ID: 304684871 5262. Atac-seq - IM infected 6 Organism: Mus musculus Source name: Lung infected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149693 Sample Accession: GSM5100099 ID: 305100099 5263. Atac-seq - IM infected 5 Organism: Mus musculus Source name: Lung infected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149692 Sample Accession: GSM5100098 ID: 305100098 5264. Atac-seq - IM infected 4 Organism: Mus musculus Source name: Lung infected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149691 Sample Accession: GSM5100097 ID: 305100097 5265. Atac-seq - IM uninfected 2 Organism: Mus musculus Source name: Lung uninfected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149690 Sample Accession: GSM5100092 ID: 305100092 5266. Atac-seq - IM uninfected 1 Organism: Mus musculus Source name: Lung uninfected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149689 Sample Accession: GSM5100089 ID: 305100089 5267. Atac-seq - AM infected_7 Organism: Mus musculus Source name: Lung infected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149688 Sample Accession: GSM5100086 ID: 305100086 5268. Atac-seq - AM infected_6 Organism: Mus musculus Source name: Lung infected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149687 Sample Accession: GSM5100083 ID: 305100083 5269. Atac-seq - AM infected_5 Organism: Mus musculus Source name: Lung infected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149686 Sample Accession: GSM5100081 ID: 305100081 5270. Atac-seq - AM uninfected_3 Organism: Mus musculus Source name: Lung uninfected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149685 Sample Accession: GSM5100079 ID: 305100079 5271. Atac-seq - AM uninfected_2 Organism: Mus musculus Source name: Lung uninfected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149684 Sample Accession: GSM5100078 ID: 305100078 5272. Atac-seq - AM uninfected_1 Organism: Mus musculus Source name: Lung uninfected cells Platform: GPL17021 Series: GSE167232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10149683 Sample Accession: GSM5100077 ID: 305100077 5273. MT2_2 snATAC-seq Organism: Mus musculus Source name: C2C12 Platform: GPL19057 Series: GSE168776 FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5267nnn/GSM5267114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10687370 Sample Accession: GSM5267114 ID: 305267114 5274. MT1_2 snATAC-seq Organism: Mus musculus Source name: C2C12 Platform: GPL19057 Series: GSE168776 FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5267nnn/GSM5267113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10687369 Sample Accession: GSM5267113 ID: 305267113 5275. FMT snATAC-seq Organism: Mus musculus Source name: C2C12 Platform: GPL19057 Series: GSE168776 FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5267nnn/GSM5267112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10687368 Sample Accession: GSM5267112 ID: 305267112 5276. MB_2 snATAC-seq Organism: Mus musculus Source name: C2C12 Platform: GPL19057 Series: GSE168776 FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5267nnn/GSM5267111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10687367 Sample Accession: GSM5267111 ID: 305267111 5277. MT2 snATAC-seq Organism: Mus musculus Source name: C2C12 Platform: GPL19057 Series: GSE168776 FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5267nnn/GSM5267110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10687366 Sample Accession: GSM5267110 ID: 305267110 5278. MT1 snATAC-seq Organism: Mus musculus Source name: C2C12 Platform: GPL19057 Series: GSE168776 FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5267nnn/GSM5267109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10687365 Sample Accession: GSM5267109 ID: 305267109 5279. MB2 snATAC-seq Organism: Mus musculus Source name: C2C12 Platform: GPL19057 Series: GSE168776 FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5267nnn/GSM5267108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10687364 Sample Accession: GSM5267108 ID: 305267108 5280. MB1 snATAC-seq Organism: Mus musculus Source name: C2C12 Platform: GPL19057 Series: GSE168776 FTP download: GEO (CSV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5267nnn/GSM5267107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10687363 Sample Accession: GSM5267107 ID: 305267107 5281. Chd8 KO.2 ATAC-seq differentiated cells biological replica 2 Organism: Mus musculus Source name: 3day differntiated cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111433 Sample Accession: GSM5086799 ID: 305086799 5282. Chd8 KO.2 ATAC-seq differentiated cells biological replica 1 Organism: Mus musculus Source name: 3day differntiated cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111432 Sample Accession: GSM5086798 ID: 305086798 5283. Chd8 KO.1 ATAC-seq differentiated cells biological replica 2 Organism: Mus musculus Source name: 3day differntiated cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111431 Sample Accession: GSM5086797 ID: 305086797 5284. Chd8 KO.1 ATAC-seq differentiated cells biological replica 1 Organism: Mus musculus Source name: 3day differntiated cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111430 Sample Accession: GSM5086796 ID: 305086796 5285. Chd8 KO.2 ATAC-seq Undifferentiated cells Organism: Mus musculus Source name: ES cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111429 Sample Accession: GSM5086795 ID: 305086795 5286. Chd8 KO.1 ATAC-seq Undifferentiated cells Organism: Mus musculus Source name: ES cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111428 Sample Accession: GSM5086794 ID: 305086794 5287. WT ATAC-seq differentiated cells biological replica 2 Organism: Mus musculus Source name: 3day differntiated cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111427 Sample Accession: GSM5086793 ID: 305086793 5288. WT ATAC-seq differentiated cells biological replica 1 Organism: Mus musculus Source name: 3day differntiated cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111426 Sample Accession: GSM5086792 ID: 305086792 5289. WT ATAC-seq Undifferentiated cells Organism: Mus musculus Source name: ES cells Platform: GPL19057 Series: GSE166859 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10111425 Sample Accession: GSM5086791 ID: 305086791 5290. Rep3 TH0 d2 TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 2 days Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106174 Sample Accession: GSM4775351 ID: 304775351 5291. Rep3 TH0 d1 TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 1 day Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106173 Sample Accession: GSM4775350 ID: 304775350 5292. Rep3 CD4 TN TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells (DAPI-CD4+CD8-CD44-/lowCD25-NK1.1-TCRgd-) from lymph nodes and spleen (day 0) Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775349/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106172 Sample Accession: GSM4775349 ID: 304775349 5293. Rep2 TH0 d2 TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 2 days Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106171 Sample Accession: GSM4775348 ID: 304775348 5294. Rep2 TH0 d1 TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 1 day Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775347/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106170 Sample Accession: GSM4775347 ID: 304775347 5295. Rep2 CD4 TN TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells (DAPI-CD4+CD8-CD44-/lowCD25-NK1.1-TCRgd-) from lymph nodes and spleen (day 0) Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106169 Sample Accession: GSM4775346 ID: 304775346 5296. Rep1 TH0 d2 TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 2 days Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106168 Sample Accession: GSM4775345 ID: 304775345 5297. Rep1 TH0 d1 TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 1 day Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106167 Sample Accession: GSM4775344 ID: 304775344 5298. Rep1 CD4 TN TKO [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells (DAPI-CD4+CD8-CD44-/lowCD25-NK1.1-TCRgd-) from lymph nodes and spleen (day 0) Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106166 Sample Accession: GSM4775343 ID: 304775343 5299. Rep3 TH0 d2 WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 2 days Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775342/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106165 Sample Accession: GSM4775342 ID: 304775342 5300. Rep3 TH0 d1 WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 1 day Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775341/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106164 Sample Accession: GSM4775341 ID: 304775341 5301. Rep3 CD4 TN WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells (DAPI-CD4+CD8-CD44-/lowCD25-NK1.1-TCRgd-) from lymph nodes and spleen (day 0) Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106163 Sample Accession: GSM4775340 ID: 304775340 5302. Rep2 TH0 d2 WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 2 days Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106162 Sample Accession: GSM4775339 ID: 304775339 5303. Rep2 TH0 d1 WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 1 day Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106161 Sample Accession: GSM4775338 ID: 304775338 5304. Rep2 CD4 TN WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells (DAPI-CD4+CD8-CD44-/lowCD25-NK1.1-TCRgd-) from lymph nodes and spleen (day 0) Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106160 Sample Accession: GSM4775337 ID: 304775337 5305. Rep1 TH0 d2 WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 2 days Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106159 Sample Accession: GSM4775336 ID: 304775336 5306. Rep1 TH0 d1 WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells from lymph nodes and spleen, activated with anti-CD3+anti-CD28 Abs for 1 day Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106158 Sample Accession: GSM4775335 ID: 304775335 5307. Rep1 CD4 TN WT [ATAC-Seq] Organism: Mus musculus Source name: sorted CD4+ naive T cells (DAPI-CD4+CD8-CD44-/lowCD25-NK1.1-TCRgd-) from lymph nodes and spleen (day 0) Platform: GPL21103 Series: GSE157812 GSE157813 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775334/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9106157 Sample Accession: GSM4775334 ID: 304775334 5308. iNKT17-2 ATAC Organism: Mus musculus Source name: Thymus Platform: GPL21103 Series: GSE172169 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10609330 Sample Accession: GSM5243335 ID: 305243335 5309. iNKT17-1 ATAC Organism: Mus musculus Source name: Thymus Platform: GPL21103 Series: GSE172169 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10609329 Sample Accession: GSM5243334 ID: 305243334 5310. iNKT2-2 ATAC Organism: Mus musculus Source name: Thymus Platform: GPL21103 Series: GSE172169 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10609328 Sample Accession: GSM5243333 ID: 305243333 5311. iNKT2-1 ATAC Organism: Mus musculus Source name: Thymus Platform: GPL21103 Series: GSE172169 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10609327 Sample Accession: GSM5243332 ID: 305243332 5312. iNKT1-2 ATAC Organism: Mus musculus Source name: Thymus Platform: GPL21103 Series: GSE172169 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10609326 Sample Accession: GSM5243331 ID: 305243331 5313. iNKT1-1 ATAC Organism: Mus musculus Source name: Thymus Platform: GPL21103 Series: GSE172169 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10609325 Sample Accession: GSM5243330 ID: 305243330 5314. ATAC-seq from foreskin keratinocyte (ENCLB811FRL) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 day Platform: GPL20301 Series: GSE173063 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661601 Sample Accession: GSM5259308 ID: 305259308 5315. ATAC-seq from foreskin keratinocyte (ENCLB139QTU) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 day Platform: GPL20301 Series: GSE173063 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661600 Sample Accession: GSM5259307 ID: 305259307 5316. ATAC-seq from foreskin keratinocyte (ENCLB019BEC) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 day Platform: GPL20301 Series: GSE173063 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661599 Sample Accession: GSM5259306 ID: 305259306 5317. ATAC-seq from foreskin keratinocyte (ENCLB027OPY) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 day Platform: GPL20301 Series: GSE173063 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661598 Sample Accession: GSM5259305 ID: 305259305 5318. ATAC-seq from foreskin keratinocyte (ENCLB849HRI) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 day Platform: GPL20301 Series: GSE173063 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661597 Sample Accession: GSM5259304 ID: 305259304 5319. ATAC-seq from foreskin keratinocyte (ENCLB344ZFY) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 day Platform: GPL20301 Series: GSE173063 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661596 Sample Accession: GSM5259303 ID: 305259303 5320. ATAC-seq from foreskin keratinocyte (ENCLB660GSC) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1 day Platform: GPL20301 Series: GSE173063 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661595 Sample Accession: GSM5259302 ID: 305259302 5321. ATAC-seq from foreskin keratinocyte (ENCLB270EEK) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661221 Sample Accession: GSM5259292 ID: 305259292 5322. ATAC-seq from foreskin keratinocyte (ENCLB374IXL) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661220 Sample Accession: GSM5259291 ID: 305259291 5323. ATAC-seq from foreskin keratinocyte (ENCLB077FPU) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661219 Sample Accession: GSM5259290 ID: 305259290 5324. ATAC-seq from foreskin keratinocyte (ENCLB674LTT) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661218 Sample Accession: GSM5259289 ID: 305259289 5325. ATAC-seq from foreskin keratinocyte (ENCLB628KNN) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661217 Sample Accession: GSM5259288 ID: 305259288 5326. ATAC-seq from foreskin keratinocyte (ENCLB832JSY) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661216 Sample Accession: GSM5259287 ID: 305259287 5327. ATAC-seq from foreskin keratinocyte (ENCLB365GKG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661215 Sample Accession: GSM5259286 ID: 305259286 5328. ATAC-seq from foreskin keratinocyte (ENCLB131MEC) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661214 Sample Accession: GSM5259285 ID: 305259285 5329. ATAC-seq from foreskin keratinocyte (ENCLB641DTG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661213 Sample Accession: GSM5259284 ID: 305259284 5330. ATAC-seq from foreskin keratinocyte (ENCLB040XMV) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2.5 days Platform: GPL20301 Series: GSE173056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661212 Sample Accession: GSM5259283 ID: 305259283 5331. ATAC-seq from foreskin keratinocyte (ENCLB329GHI) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661588 Sample Accession: GSM5259282 ID: 305259282 5332. ATAC-seq from foreskin keratinocyte (ENCLB724FGU) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661587 Sample Accession: GSM5259281 ID: 305259281 5333. ATAC-seq from foreskin keratinocyte (ENCLB521NFC) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661586 Sample Accession: GSM5259280 ID: 305259280 5334. ATAC-seq from foreskin keratinocyte (ENCLB676EPF) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661585 Sample Accession: GSM5259279 ID: 305259279 5335. ATAC-seq from foreskin keratinocyte (ENCLB225XVU) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661584 Sample Accession: GSM5259278 ID: 305259278 5336. ATAC-seq from foreskin keratinocyte (ENCLB497UOW) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661583 Sample Accession: GSM5259277 ID: 305259277 5337. ATAC-seq from foreskin keratinocyte (ENCLB824NWT) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661582 Sample Accession: GSM5259276 ID: 305259276 5338. ATAC-seq from foreskin keratinocyte (ENCLB577OSB) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661581 Sample Accession: GSM5259275 ID: 305259275 5339. ATAC-seq from foreskin keratinocyte (ENCLB921NUM) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661580 Sample Accession: GSM5259274 ID: 305259274 5340. ATAC-seq from foreskin keratinocyte (ENCLB655ODB) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661579 Sample Accession: GSM5259273 ID: 305259273 5341. ATAC-seq from foreskin keratinocyte (ENCLB989KEL) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3 days Platform: GPL20301 Series: GSE173055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661578 Sample Accession: GSM5259272 ID: 305259272 5342. ATAC-seq from gastrocnemius medialis (ENCLB194NLZ) Organism: Homo sapiens Source name: Homo sapiens gastrocnemius medialis tissue female adult (53 years) Platform: GPL20301 Series: GSE172991 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661505 Sample Accession: GSM5259180 ID: 305259180 5343. ATAC-seq from testis (ENCLB258HLF) Organism: Homo sapiens Source name: Homo sapiens testis tissue male adult (37 years) Platform: GPL20301 Series: GSE172988 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661503 Sample Accession: GSM5259177 ID: 305259177 5344. ATAC-seq from breast epithelium (ENCLB957OSQ) Organism: Homo sapiens Source name: Homo sapiens male adult (54 years) breast epithelium tissue Platform: GPL20301 Series: GSE172981 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661497 Sample Accession: GSM5259170 ID: 305259170 5345. ATAC-seq from foreskin keratinocyte (ENCLB153AQG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium Platform: GPL20301 Series: GSE172964 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661480 Sample Accession: GSM5259149 ID: 305259149 5346. ATAC-seq from foreskin keratinocyte (ENCLB524BPZ) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium Platform: GPL20301 Series: GSE172964 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661479 Sample Accession: GSM5259148 ID: 305259148 5347. ATAC-seq from foreskin keratinocyte (ENCLB895OCD) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium Platform: GPL20301 Series: GSE172964 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661478 Sample Accession: GSM5259147 ID: 305259147 5348. ATAC-seq from foreskin keratinocyte (ENCLB684RWM) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium Platform: GPL20301 Series: GSE172964 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661477 Sample Accession: GSM5259146 ID: 305259146 5349. ATAC-seq from foreskin keratinocyte (ENCLB971GPW) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium Platform: GPL20301 Series: GSE172964 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661476 Sample Accession: GSM5259145 ID: 305259145 5350. ATAC-seq from foreskin keratinocyte (ENCLB129MVO) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium Platform: GPL20301 Series: GSE172964 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661475 Sample Accession: GSM5259144 ID: 305259144 5351. ATAC-seq from foreskin keratinocyte (ENCLB631VIN) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium Platform: GPL20301 Series: GSE172964 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661474 Sample Accession: GSM5259143 ID: 305259143 5352. ATAC-seq from foreskin keratinocyte (ENCLB452CAH) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium Platform: GPL20301 Series: GSE172964 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661473 Sample Accession: GSM5259142 ID: 305259142 5353. ATAC-seq from excitatory neuron (ENCLB066COW) Organism: Homo sapiens Source name: Homo sapiens male adult (30 years) excitatory neuron in vitro differentiated cells genetically modified (insertion) using TALEN originated from WTC11 Platform: GPL20301 Series: GSE172950 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660946 Sample Accession: GSM5259126 ID: 305259126 5354. ATAC-seq from excitatory neuron (ENCLB316BUG) Organism: Homo sapiens Source name: Homo sapiens male adult (30 years) excitatory neuron in vitro differentiated cells genetically modified (insertion) using TALEN originated from WTC11 Platform: GPL20301 Series: GSE172950 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660945 Sample Accession: GSM5259125 ID: 305259125 5355. ATAC-seq from foreskin keratinocyte (ENCLB996QFW) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661455 Sample Accession: GSM5259118 ID: 305259118 5356. ATAC-seq from foreskin keratinocyte (ENCLB436WON) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661454 Sample Accession: GSM5259117 ID: 305259117 5357. ATAC-seq from foreskin keratinocyte (ENCLB458BOO) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661453 Sample Accession: GSM5259116 ID: 305259116 5358. ATAC-seq from foreskin keratinocyte (ENCLB236UMT) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661452 Sample Accession: GSM5259115 ID: 305259115 5359. ATAC-seq from foreskin keratinocyte (ENCLB939WGI) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661451 Sample Accession: GSM5259114 ID: 305259114 5360. ATAC-seq from foreskin keratinocyte (ENCLB920SPF) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661450 Sample Accession: GSM5259113 ID: 305259113 5361. ATAC-seq from foreskin keratinocyte (ENCLB554GEK) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661449 Sample Accession: GSM5259112 ID: 305259112 5362. ATAC-seq from foreskin keratinocyte (ENCLB431NYD) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661448 Sample Accession: GSM5259111 ID: 305259111 5363. ATAC-seq from foreskin keratinocyte (ENCLB252RPL) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661447 Sample Accession: GSM5259110 ID: 305259110 5364. ATAC-seq from foreskin keratinocyte (ENCLB771QQE) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4.5 days Platform: GPL20301 Series: GSE172944 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661446 Sample Accession: GSM5259109 ID: 305259109 5365. ATAC-seq from transverse colon (ENCLB018MKK) Organism: Homo sapiens Source name: Homo sapiens transverse colon tissue male adult (37 years) Platform: GPL20301 Series: GSE172936 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660967 Sample Accession: GSM5259098 ID: 305259098 5366. ATAC-seq from transverse colon (ENCLB091AYH) Organism: Homo sapiens Source name: Homo sapiens transverse colon tissue female adult (51 year) Platform: GPL20301 Series: GSE172929 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259088/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661431 Sample Accession: GSM5259088 ID: 305259088 5367. ATAC-seq from foreskin keratinocyte (ENCLB990XWX) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661208 Sample Accession: GSM5259055 ID: 305259055 5368. ATAC-seq from foreskin keratinocyte (ENCLB526RLC) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661207 Sample Accession: GSM5259054 ID: 305259054 5369. ATAC-seq from foreskin keratinocyte (ENCLB987CDQ) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661206 Sample Accession: GSM5259053 ID: 305259053 5370. ATAC-seq from foreskin keratinocyte (ENCLB889CVO) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661205 Sample Accession: GSM5259052 ID: 305259052 5371. ATAC-seq from foreskin keratinocyte (ENCLB892XGI) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661204 Sample Accession: GSM5259051 ID: 305259051 5372. ATAC-seq from foreskin keratinocyte (ENCLB123VPU) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661203 Sample Accession: GSM5259050 ID: 305259050 5373. ATAC-seq from foreskin keratinocyte (ENCLB936EWE) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259049/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661202 Sample Accession: GSM5259049 ID: 305259049 5374. ATAC-seq from foreskin keratinocyte (ENCLB034CND) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661201 Sample Accession: GSM5259048 ID: 305259048 5375. ATAC-seq from foreskin keratinocyte (ENCLB097FAS) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661200 Sample Accession: GSM5259047 ID: 305259047 5376. ATAC-seq from foreskin keratinocyte (ENCLB633BPS) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661199 Sample Accession: GSM5259046 ID: 305259046 5377. ATAC-seq from foreskin keratinocyte (ENCLB628QOF) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 4 days Platform: GPL20301 Series: GSE172910 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661198 Sample Accession: GSM5259045 ID: 305259045 5378. ATAC-seq from DND-41 (ENCLB946ZTU) Organism: Homo sapiens Source name: Homo sapiens DND-41 cell line Platform: GPL20301 Series: GSE172903 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661406 Sample Accession: GSM5259037 ID: 305259037 5379. ATAC-seq from DND-41 (ENCLB887BAP) Organism: Homo sapiens Source name: Homo sapiens DND-41 cell line Platform: GPL20301 Series: GSE172903 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661405 Sample Accession: GSM5259036 ID: 305259036 5380. ATAC-seq from DND-41 (ENCLB169DQE) Organism: Homo sapiens Source name: Homo sapiens DND-41 cell line Platform: GPL20301 Series: GSE172903 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661404 Sample Accession: GSM5259035 ID: 305259035 5381. ATAC-seq from NCI-H929 (ENCLB515ACH) Organism: Homo sapiens Source name: Homo sapiens NCI-H929 cell line Platform: GPL20301 Series: GSE172886 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661386 Sample Accession: GSM5259012 ID: 305259012 5382. ATAC-seq from NCI-H929 (ENCLB567EDU) Organism: Homo sapiens Source name: Homo sapiens NCI-H929 cell line Platform: GPL20301 Series: GSE172886 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661385 Sample Accession: GSM5259011 ID: 305259011 5383. ATAC-seq from NCI-H929 (ENCLB065ROA) Organism: Homo sapiens Source name: Homo sapiens NCI-H929 cell line Platform: GPL20301 Series: GSE172886 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661384 Sample Accession: GSM5259010 ID: 305259010 5384. ATAC-seq from breast epithelium (ENCLB744SLA) Organism: Homo sapiens Source name: Homo sapiens breast epithelium tissue female adult (53 years) Platform: GPL20301 Series: GSE172884 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660969 Sample Accession: GSM5259007 ID: 305259007 5385. ATAC-seq from thyroid gland (ENCLB721BMO) Organism: Homo sapiens Source name: Homo sapiens female adult (53 years) thyroid gland tissue Platform: GPL20301 Series: GSE172883 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661381 Sample Accession: GSM5259006 ID: 305259006 5386. ATAC-seq from foreskin keratinocyte (ENCLB129DAM) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661376 Sample Accession: GSM5258989 ID: 305258989 5387. ATAC-seq from foreskin keratinocyte (ENCLB237QTU) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661375 Sample Accession: GSM5258988 ID: 305258988 5388. ATAC-seq from foreskin keratinocyte (ENCLB215IKE) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661374 Sample Accession: GSM5258987 ID: 305258987 5389. ATAC-seq from foreskin keratinocyte (ENCLB623MJD) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661373 Sample Accession: GSM5258986 ID: 305258986 5390. ATAC-seq from foreskin keratinocyte (ENCLB012MNW) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661372 Sample Accession: GSM5258985 ID: 305258985 5391. ATAC-seq from foreskin keratinocyte (ENCLB713KDG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661371 Sample Accession: GSM5258984 ID: 305258984 5392. ATAC-seq from foreskin keratinocyte (ENCLB602YIV) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661370 Sample Accession: GSM5258983 ID: 305258983 5393. ATAC-seq from foreskin keratinocyte (ENCLB934SDL) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661369 Sample Accession: GSM5258982 ID: 305258982 5394. ATAC-seq from foreskin keratinocyte (ENCLB830PDW) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 2 days Platform: GPL20301 Series: GSE172877 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661368 Sample Accession: GSM5258981 ID: 305258981 5395. ATAC-seq from foreskin keratinocyte (ENCLB627NLP) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258974/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661363 Sample Accession: GSM5258974 ID: 305258974 5396. ATAC-seq from foreskin keratinocyte (ENCLB131WIP) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258973/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661362 Sample Accession: GSM5258973 ID: 305258973 5397. ATAC-seq from foreskin keratinocyte (ENCLB417OAH) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661361 Sample Accession: GSM5258972 ID: 305258972 5398. ATAC-seq from foreskin keratinocyte (ENCLB472LYY) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258971/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661360 Sample Accession: GSM5258971 ID: 305258971 5399. ATAC-seq from foreskin keratinocyte (ENCLB561JGB) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661359 Sample Accession: GSM5258970 ID: 305258970 5400. ATAC-seq from foreskin keratinocyte (ENCLB126RNA) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258969/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661358 Sample Accession: GSM5258969 ID: 305258969 5401. ATAC-seq from foreskin keratinocyte (ENCLB435ETQ) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661357 Sample Accession: GSM5258968 ID: 305258968 5402. ATAC-seq from foreskin keratinocyte (ENCLB707DOJ) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661356 Sample Accession: GSM5258967 ID: 305258967 5403. ATAC-seq from foreskin keratinocyte (ENCLB228YJR) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661355 Sample Accession: GSM5258966 ID: 305258966 5404. ATAC-seq from foreskin keratinocyte (ENCLB597PAR) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5 days Platform: GPL20301 Series: GSE172873 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661354 Sample Accession: GSM5258965 ID: 305258965 5405. ATAC-seq from right lobe of liver (ENCLB025PAH) Organism: Homo sapiens Source name: Homo sapiens right lobe of liver tissue female adult (53 years) Platform: GPL20301 Series: GSE172863 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660979 Sample Accession: GSM5258952 ID: 305258952 5406. ATAC-seq from foreskin keratinocyte (ENCLB413SEK) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell Platform: GPL20301 Series: GSE172802 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661282 Sample Accession: GSM5258834 ID: 305258834 5407. ATAC-seq from foreskin keratinocyte (ENCLB904SZX) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell Platform: GPL20301 Series: GSE172802 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661281 Sample Accession: GSM5258833 ID: 305258833 5408. ATAC-seq from foreskin keratinocyte (ENCLB080YOM) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell Platform: GPL20301 Series: GSE172802 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258832/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661280 Sample Accession: GSM5258832 ID: 305258832 5409. ATAC-seq from foreskin keratinocyte (ENCLB167MTB) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell Platform: GPL20301 Series: GSE172802 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258831/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661279 Sample Accession: GSM5258831 ID: 305258831 5410. ATAC-seq from foreskin keratinocyte (ENCLB551ZIG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell Platform: GPL20301 Series: GSE172802 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661278 Sample Accession: GSM5258830 ID: 305258830 5411. ATAC-seq from foreskin keratinocyte (ENCLB762MLF) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell Platform: GPL20301 Series: GSE172802 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661277 Sample Accession: GSM5258829 ID: 305258829 5412. ATAC-seq from foreskin keratinocyte (ENCLB250SBS) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell Platform: GPL20301 Series: GSE172802 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661276 Sample Accession: GSM5258828 ID: 305258828 5413. ATAC-seq from foreskin keratinocyte (ENCLB585OEK) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell Platform: GPL20301 Series: GSE172802 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661275 Sample Accession: GSM5258827 ID: 305258827 5414. ATAC-seq from heart left ventricle (ENCLB332HEY) Organism: Homo sapiens Source name: Homo sapiens heart left ventricle tissue female adult (51 year) Platform: GPL20301 Series: GSE172792 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258814/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661264 Sample Accession: GSM5258814 ID: 305258814 5415. ATAC-seq from stomach (ENCLB984LIW) Organism: Homo sapiens Source name: Homo sapiens stomach tissue male adult (54 years) Platform: GPL20301 Series: GSE172791 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661263 Sample Accession: GSM5258813 ID: 305258813 5416. ATAC-seq from sigmoid colon (ENCLB998DKY) Organism: Homo sapiens Source name: Homo sapiens sigmoid colon tissue female adult (51 year) Platform: GPL20301 Series: GSE172790 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660944 Sample Accession: GSM5258812 ID: 305258812 5417. ATAC-seq from heart left ventricle (ENCLB353YOY) Organism: Homo sapiens Source name: Homo sapiens heart left ventricle tissue female adult (53 years) Platform: GPL20301 Series: GSE172786 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661260 Sample Accession: GSM5258808 ID: 305258808 5418. ATAC-seq from tibial nerve (ENCLB603TGS) Organism: Homo sapiens Source name: Homo sapiens tibial nerve tissue female adult (51 year) Platform: GPL20301 Series: GSE172747 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661009 Sample Accession: GSM5258757 ID: 305258757 5419. ATAC-seq from esophagus squamous epithelium (ENCLB105YTZ) Organism: Homo sapiens Source name: Homo sapiens esophagus squamous epithelium tissue female adult (51 year) Platform: GPL20301 Series: GSE172741 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258748/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661008 Sample Accession: GSM5258748 ID: 305258748 5420. ATAC-seq from gastrocnemius medialis (ENCLB716UXI) Organism: Homo sapiens Source name: Homo sapiens gastrocnemius medialis tissue female adult (51 year) Platform: GPL20301 Series: GSE172734 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661056 Sample Accession: GSM5258738 ID: 305258738 5421. ATAC-seq from sigmoid colon (ENCLB753COG) Organism: Homo sapiens Source name: Homo sapiens sigmoid colon tissue male adult (54 years) Platform: GPL20301 Series: GSE172711 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661028 Sample Accession: GSM5258706 ID: 305258706 5422. ATAC-seq from coronary artery (ENCLB031CLU) Organism: Homo sapiens Source name: Homo sapiens female adult (51 years) coronary artery tissue Platform: GPL20301 Series: GSE172701 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660929 Sample Accession: GSM5258693 ID: 305258693 5423. ATAC-seq from RWPE2 (ENCLB293SLX) Organism: Homo sapiens Source name: Homo sapiens RWPE2 cell line Platform: GPL20301 Series: GSE172699 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660927 Sample Accession: GSM5258691 ID: 305258691 5424. ATAC-seq from RWPE2 (ENCLB734LAL) Organism: Homo sapiens Source name: Homo sapiens RWPE2 cell line Platform: GPL20301 Series: GSE172699 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660926 Sample Accession: GSM5258690 ID: 305258690 5425. ATAC-seq from RWPE2 (ENCLB984XHJ) Organism: Homo sapiens Source name: Homo sapiens RWPE2 cell line Platform: GPL20301 Series: GSE172699 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660925 Sample Accession: GSM5258689 ID: 305258689 5426. ATAC-seq from foreskin keratinocyte (ENCLB694JTW) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660916 Sample Accession: GSM5258680 ID: 305258680 5427. ATAC-seq from foreskin keratinocyte (ENCLB850SWS) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660915 Sample Accession: GSM5258679 ID: 305258679 5428. ATAC-seq from foreskin keratinocyte (ENCLB072QRI) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660914 Sample Accession: GSM5258678 ID: 305258678 5429. ATAC-seq from foreskin keratinocyte (ENCLB994SZO) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660913 Sample Accession: GSM5258677 ID: 305258677 5430. ATAC-seq from foreskin keratinocyte (ENCLB597NRR) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660912 Sample Accession: GSM5258676 ID: 305258676 5431. ATAC-seq from foreskin keratinocyte (ENCLB261UYB) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660911 Sample Accession: GSM5258675 ID: 305258675 5432. ATAC-seq from foreskin keratinocyte (ENCLB760VXI) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660910 Sample Accession: GSM5258674 ID: 305258674 5433. ATAC-seq from foreskin keratinocyte (ENCLB551WGV) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660909 Sample Accession: GSM5258673 ID: 305258673 5434. ATAC-seq from foreskin keratinocyte (ENCLB233PHZ) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 1.5 days Platform: GPL20301 Series: GSE172693 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660908 Sample Accession: GSM5258672 ID: 305258672 5435. ATAC-seq from spleen (ENCLB996QNU) Organism: Homo sapiens Source name: Homo sapiens spleen tissue female adult (51 year) Platform: GPL20301 Series: GSE172685 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660896 Sample Accession: GSM5258660 ID: 305258660 5436. ATAC-seq from foreskin keratinocyte (ENCLB891CCF) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660889 Sample Accession: GSM5258653 ID: 305258653 5437. ATAC-seq from foreskin keratinocyte (ENCLB517XIL) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660888 Sample Accession: GSM5258652 ID: 305258652 5438. ATAC-seq from foreskin keratinocyte (ENCLB418FDD) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660887 Sample Accession: GSM5258651 ID: 305258651 5439. ATAC-seq from foreskin keratinocyte (ENCLB190HQK) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660886 Sample Accession: GSM5258650 ID: 305258650 5440. ATAC-seq from foreskin keratinocyte (ENCLB751PIE) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660885 Sample Accession: GSM5258649 ID: 305258649 5441. ATAC-seq from foreskin keratinocyte (ENCLB112FTD) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660884 Sample Accession: GSM5258648 ID: 305258648 5442. ATAC-seq from foreskin keratinocyte (ENCLB189VFV) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660883 Sample Accession: GSM5258647 ID: 305258647 5443. ATAC-seq from foreskin keratinocyte (ENCLB120SNK) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660882 Sample Accession: GSM5258646 ID: 305258646 5444. ATAC-seq from foreskin keratinocyte (ENCLB981GVD) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660881 Sample Accession: GSM5258645 ID: 305258645 5445. ATAC-seq from foreskin keratinocyte (ENCLB674WWG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 5.5 days Platform: GPL20301 Series: GSE172678 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660880 Sample Accession: GSM5258644 ID: 305258644 5446. ATAC-seq from subcutaneous adipose tissue (ENCLB503MYH) Organism: Homo sapiens Source name: Homo sapiens subcutaneous adipose tissue female adult (53 years) Platform: GPL20301 Series: GSE172647 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660834 Sample Accession: GSM5258563 ID: 305258563 5447. ATAC-seq from foreskin keratinocyte (ENCLB907LKG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660822 Sample Accession: GSM5258551 ID: 305258551 5448. ATAC-seq from foreskin keratinocyte (ENCLB193BUE) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660821 Sample Accession: GSM5258550 ID: 305258550 5449. ATAC-seq from foreskin keratinocyte (ENCLB662WCS) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660820 Sample Accession: GSM5258549 ID: 305258549 5450. ATAC-seq from foreskin keratinocyte (ENCLB891LFO) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660819 Sample Accession: GSM5258548 ID: 305258548 5451. ATAC-seq from foreskin keratinocyte (ENCLB915ZDP) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660818 Sample Accession: GSM5258547 ID: 305258547 5452. ATAC-seq from foreskin keratinocyte (ENCLB765OIZ) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660817 Sample Accession: GSM5258546 ID: 305258546 5453. ATAC-seq from foreskin keratinocyte (ENCLB249ZCE) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660816 Sample Accession: GSM5258545 ID: 305258545 5454. ATAC-seq from foreskin keratinocyte (ENCLB376XLB) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660815 Sample Accession: GSM5258544 ID: 305258544 5455. ATAC-seq from foreskin keratinocyte (ENCLB834WOD) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660814 Sample Accession: GSM5258543 ID: 305258543 5456. ATAC-seq from foreskin keratinocyte (ENCLB293BPT) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 0.5 days Platform: GPL20301 Series: GSE172637 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660813 Sample Accession: GSM5258542 ID: 305258542 5457. ATAC-seq from omental fat pad (ENCLB041VOC) Organism: Homo sapiens Source name: Homo sapiens omental fat pad tissue female adult (51 year) Platform: GPL20301 Series: GSE172635 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660811 Sample Accession: GSM5258540 ID: 305258540 5458. ATAC-seq from foreskin keratinocyte (ENCLB029WIY) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660794 Sample Accession: GSM5258503 ID: 305258503 5459. ATAC-seq from foreskin keratinocyte (ENCLB118KNG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258502/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660793 Sample Accession: GSM5258502 ID: 305258502 5460. ATAC-seq from foreskin keratinocyte (ENCLB316GSQ) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258501/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660792 Sample Accession: GSM5258501 ID: 305258501 5461. ATAC-seq from foreskin keratinocyte (ENCLB788BWY) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660791 Sample Accession: GSM5258500 ID: 305258500 5462. ATAC-seq from foreskin keratinocyte (ENCLB490ZOG) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660790 Sample Accession: GSM5258499 ID: 305258499 5463. ATAC-seq from foreskin keratinocyte (ENCLB406MWM) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660789 Sample Accession: GSM5258498 ID: 305258498 5464. ATAC-seq from foreskin keratinocyte (ENCLB414PDL) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660788 Sample Accession: GSM5258497 ID: 305258497 5465. ATAC-seq from foreskin keratinocyte (ENCLB081PBN) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660787 Sample Accession: GSM5258496 ID: 305258496 5466. ATAC-seq from foreskin keratinocyte (ENCLB204YKK) Organism: Homo sapiens Source name: Homo sapiens male newborn (2-4 days) foreskin keratinocyte primary cell treated with 1.2 mM calcium for 3.5 days Platform: GPL20301 Series: GSE172622 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660786 Sample Accession: GSM5258495 ID: 305258495 5467. ATAC-seq from body of pancreas (ENCLB581LYM) Organism: Homo sapiens Source name: Homo sapiens body of pancreas tissue female adult (51 year) Platform: GPL20301 Series: GSE172607 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258439/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660753 Sample Accession: GSM5258439 ID: 305258439 5468. ATAC-seq from Peyer's patch (ENCLB908YZQ) Organism: Homo sapiens Source name: Homo sapiens female adult (53 years) Peyer's patch tissue Platform: GPL20301 Series: GSE172595 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660737 Sample Accession: GSM5258415 ID: 305258415 5469. ATAC-seq from transverse colon (ENCLB746WRB) Organism: Homo sapiens Source name: Homo sapiens transverse colon tissue male adult (54 years) Platform: GPL20301 Series: GSE172574 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660709 Sample Accession: GSM5258381 ID: 305258381 5470. ATAC-seq from ovary (ENCLB771HZA) Organism: Homo sapiens Source name: Homo sapiens ovary tissue female adult (53 years) Platform: GPL20301 Series: GSE172563 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258361/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660697 Sample Accession: GSM5258361 ID: 305258361 5471. ATAC-seq from gastroesophageal sphincter (ENCLB374PIF) Organism: Homo sapiens Source name: Homo sapiens gastroesophageal sphincter tissue female adult (51 year) Platform: GPL20301 Series: GSE172558 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258352/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660688 Sample Accession: GSM5258352 ID: 305258352 5472. 114A_S8 Organism: Homo sapiens Source name: 114A_S8 Platform: GPL20301 Series: GSE152338 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5145nnn/GSM5145771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10293040 Sample Accession: GSM5145771 ID: 305145771 5473. 110C_S7 Organism: Homo sapiens Source name: 110C_S7 Platform: GPL20301 Series: GSE152338 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5145nnn/GSM5145770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10293039 Sample Accession: GSM5145770 ID: 305145770 5474. WT_S6 Organism: Homo sapiens Source name: WT_S6 Platform: GPL20301 Series: GSE152338 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5145nnn/GSM5145769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10293038 Sample Accession: GSM5145769 ID: 305145769 5475. 110T_S5 Organism: Homo sapiens Source name: 110T_S5 Platform: GPL20301 Series: GSE152338 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5145nnn/GSM5145768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10293037 Sample Accession: GSM5145768 ID: 305145768 5476. 110G_S4 Organism: Homo sapiens Source name: 110G_S4 Platform: GPL20301 Series: GSE152338 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5145nnn/GSM5145767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10293036 Sample Accession: GSM5145767 ID: 305145767 5477. 113G_S3 Organism: Homo sapiens Source name: 113G_S3 Platform: GPL20301 Series: GSE152338 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5145nnn/GSM5145766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10293035 Sample Accession: GSM5145766 ID: 305145766 5478. 117A_S2 Organism: Homo sapiens Source name: 117A_S2 Platform: GPL20301 Series: GSE152338 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5145nnn/GSM5145765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10293034 Sample Accession: GSM5145765 ID: 305145765 5479. 13nt_S1 Organism: Homo sapiens Source name: 13nt_S1 Platform: GPL20301 Series: GSE152338 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5145nnn/GSM5145764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10293033 Sample Accession: GSM5145764 ID: 305145764 5480. ATAC-seq from liver (ENCLB423CNX) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE173061 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661594 Sample Accession: GSM5259300 ID: 305259300 5481. ATAC-seq from liver (ENCLB633ZWN) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE173061 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661593 Sample Accession: GSM5259299 ID: 305259299 5482. ATAC-seq from neural tube (ENCLB448BWJ) Organism: Mus musculus Source name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE173059 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660942 Sample Accession: GSM5259297 ID: 305259297 5483. ATAC-seq from neural tube (ENCLB671DSC) Organism: Mus musculus Source name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE173059 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660941 Sample Accession: GSM5259296 ID: 305259296 5484. ATAC-seq from kidney (ENCLB553FWL) Organism: Mus musculus Source name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE173052 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661575 Sample Accession: GSM5259268 ID: 305259268 5485. ATAC-seq from kidney (ENCLB698MZX) Organism: Mus musculus Source name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE173052 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661574 Sample Accession: GSM5259267 ID: 305259267 5486. ATAC-seq from limb (ENCLB098ZVT) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap limb tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE173049 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661570 Sample Accession: GSM5259263 ID: 305259263 5487. ATAC-seq from limb (ENCLB178EWS) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap limb tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE173049 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661569 Sample Accession: GSM5259262 ID: 305259262 5488. ATAC-seq from forebrain (ENCLB997YQF) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE173047 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661566 Sample Accession: GSM5259259 ID: 305259259 5489. ATAC-seq from forebrain (ENCLB476DGD) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE173047 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661565 Sample Accession: GSM5259258 ID: 305259258 5490. ATAC-seq from heart (ENCLB122XDP) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE173028 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661546 Sample Accession: GSM5259232 ID: 305259232 5491. ATAC-seq from heart (ENCLB749GLW) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE173028 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661545 Sample Accession: GSM5259231 ID: 305259231 5492. ATAC-seq from intestine (ENCLB539OPC) Organism: Mus musculus Source name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE173025 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259228/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661542 Sample Accession: GSM5259228 ID: 305259228 5493. ATAC-seq from intestine (ENCLB448PET) Organism: Mus musculus Source name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE173025 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259227/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661541 Sample Accession: GSM5259227 ID: 305259227 5494. ATAC-seq from neural tube (ENCLB606GVG) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) neural tube tissue Platform: GPL21103 Series: GSE173018 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661534 Sample Accession: GSM5259219 ID: 305259219 5495. ATAC-seq from neural tube (ENCLB772YWR) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap neural tube tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE173018 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661533 Sample Accession: GSM5259218 ID: 305259218 5496. ATAC-seq from neural tube (ENCLB750SGU) Organism: Mus musculus Source name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE173015 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661530 Sample Accession: GSM5259214 ID: 305259214 5497. ATAC-seq from neural tube (ENCLB512LSH) Organism: Mus musculus Source name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE173015 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661529 Sample Accession: GSM5259213 ID: 305259213 5498. ATAC-seq from neural tube (ENCLB454TUX) Organism: Mus musculus Source name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172998 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661513 Sample Accession: GSM5259191 ID: 305259191 5499. ATAC-seq from neural tube (ENCLB975CWE) Organism: Mus musculus Source name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172998 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661512 Sample Accession: GSM5259190 ID: 305259190 5500. ATAC-seq from intestine (ENCLB298CHP) Organism: Mus musculus Source name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172997 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661511 Sample Accession: GSM5259189 ID: 305259189 5501. ATAC-seq from intestine (ENCLB594LAJ) Organism: Mus musculus Source name: Mus musculus strain B6NCrl intestine tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172997 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661510 Sample Accession: GSM5259188 ID: 305259188 5502. ATAC-seq from midbrain (ENCLB290KSM) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172993 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660993 Sample Accession: GSM5259184 ID: 305259184 5503. ATAC-seq from midbrain (ENCLB296UDQ) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172993 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660992 Sample Accession: GSM5259183 ID: 305259183 5504. ATAC-seq from limb (ENCLB591GMS) Organism: Mus musculus Source name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172969 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661486 Sample Accession: GSM5259155 ID: 305259155 5505. ATAC-seq from limb (ENCLB358RYO) Organism: Mus musculus Source name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172969 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661485 Sample Accession: GSM5259154 ID: 305259154 5506. ATAC-seq from kidney (ENCLB678YRF) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172935 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661437 Sample Accession: GSM5259097 ID: 305259097 5507. ATAC-seq from kidney (ENCLB497HBT) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172935 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661436 Sample Accession: GSM5259096 ID: 305259096 5508. ATAC-seq from lung (ENCLB554JEM) Organism: Mus musculus Source name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172933 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661013 Sample Accession: GSM5259094 ID: 305259094 5509. ATAC-seq from lung (ENCLB712AUO) Organism: Mus musculus Source name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172933 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661012 Sample Accession: GSM5259093 ID: 305259093 5510. ATAC-seq from hindbrain (ENCLB538DEZ) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172917 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661420 Sample Accession: GSM5259065 ID: 305259065 5511. ATAC-seq from hindbrain (ENCLB515XAE) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172917 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259064/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661419 Sample Accession: GSM5259064 ID: 305259064 5512. ATAC-seq from hindbrain (ENCLB079ZQQ) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172912 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661415 Sample Accession: GSM5259059 ID: 305259059 5513. ATAC-seq from hindbrain (ENCLB558GZX) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172912 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661414 Sample Accession: GSM5259058 ID: 305259058 5514. ATAC-seq from midbrain (ENCLB278SCS) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172911 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661413 Sample Accession: GSM5259057 ID: 305259057 5515. ATAC-seq from midbrain (ENCLB555CNQ) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap midbrain tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172911 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661412 Sample Accession: GSM5259056 ID: 305259056 5516. ATAC-seq from midbrain (ENCLB534QZD) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172900 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661401 Sample Accession: GSM5259032 ID: 305259032 5517. ATAC-seq from midbrain (ENCLB664GGY) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172900 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661400 Sample Accession: GSM5259031 ID: 305259031 5518. ATAC-seq from heart (ENCLB030OLH) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172876 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661367 Sample Accession: GSM5258980 ID: 305258980 5519. ATAC-seq from heart (ENCLB238LPB) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172876 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661366 Sample Accession: GSM5258979 ID: 305258979 5520. ATAC-seq from forebrain (ENCLB429FVW) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172874 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661365 Sample Accession: GSM5258976 ID: 305258976 5521. ATAC-seq from forebrain (ENCLB589ZDE) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172874 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661364 Sample Accession: GSM5258975 ID: 305258975 5522. ATAC-seq from limb (ENCLB327FUE) Organism: Mus musculus Source name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172871 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661352 Sample Accession: GSM5258963 ID: 305258963 5523. ATAC-seq from limb (ENCLB020KTH) Organism: Mus musculus Source name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172871 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661351 Sample Accession: GSM5258962 ID: 305258962 5524. ATAC-seq from limb (ENCLB908GWV) Organism: Mus musculus Source name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172866 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661347 Sample Accession: GSM5258957 ID: 305258957 5525. ATAC-seq from limb (ENCLB467PZI) Organism: Mus musculus Source name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172866 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661346 Sample Accession: GSM5258956 ID: 305258956 5526. ATAC-seq from midbrain (ENCLB050BRU) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172861 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661342 Sample Accession: GSM5258933 ID: 305258933 5527. ATAC-seq from midbrain (ENCLB618YHF) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172861 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661341 Sample Accession: GSM5258932 ID: 305258932 5528. ATAC-seq from heart (ENCLB386LRA) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172853 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660965 Sample Accession: GSM5258902 ID: 305258902 5529. ATAC-seq from heart (ENCLB268QYI) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172853 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660964 Sample Accession: GSM5258901 ID: 305258901 5530. ATAC-seq from embryonic facial prominence (ENCLB581HEB) Organism: Mus musculus Source name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172845 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661325 Sample Accession: GSM5258891 ID: 305258891 5531. ATAC-seq from embryonic facial prominence (ENCLB258PGQ) Organism: Mus musculus Source name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172845 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661324 Sample Accession: GSM5258890 ID: 305258890 5532. ATAC-seq from intestine (ENCLB325XDP) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172837 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661316 Sample Accession: GSM5258881 ID: 305258881 5533. ATAC-seq from intestine (ENCLB069VWJ) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) intestine tissue Platform: GPL21103 Series: GSE172837 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661315 Sample Accession: GSM5258880 ID: 305258880 5534. ATAC-seq from embryonic facial prominence (ENCLB250QOF) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172836 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661314 Sample Accession: GSM5258879 ID: 305258879 5535. ATAC-seq from embryonic facial prominence (ENCLB975YXF) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap embryonic facial prominence tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172836 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661313 Sample Accession: GSM5258878 ID: 305258878 5536. ATAC-seq from stomach (ENCLB280GIO) Organism: Mus musculus Source name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172822 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258861/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661301 Sample Accession: GSM5258861 ID: 305258861 5537. ATAC-seq from stomach (ENCLB082IHZ) Organism: Mus musculus Source name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172822 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661300 Sample Accession: GSM5258860 ID: 305258860 5538. ATAC-seq from lung (ENCLB481OLK) Organism: Mus musculus Source name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172813 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661292 Sample Accession: GSM5258848 ID: 305258848 5539. ATAC-seq from lung (ENCLB229NOX) Organism: Mus musculus Source name: Mus musculus strain B6NCrl lung tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172813 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661291 Sample Accession: GSM5258847 ID: 305258847 5540. ATAC-seq from embryonic facial prominence (ENCLB412DVS) Organism: Mus musculus Source name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172812 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661290 Sample Accession: GSM5258846 ID: 305258846 5541. ATAC-seq from embryonic facial prominence (ENCLB297PYC) Organism: Mus musculus Source name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172812 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661289 Sample Accession: GSM5258845 ID: 305258845 5542. ATAC-seq from hindbrain (ENCLB383AFC) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172800 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661274 Sample Accession: GSM5258825 ID: 305258825 5543. ATAC-seq from hindbrain (ENCLB478RAK) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172800 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661273 Sample Accession: GSM5258824 ID: 305258824 5544. ATAC-seq from stomach (ENCLB880WNY) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172784 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661015 Sample Accession: GSM5258805 ID: 305258805 5545. ATAC-seq from stomach (ENCLB322JPD) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172784 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661014 Sample Accession: GSM5258804 ID: 305258804 5546. ATAC-seq from liver (ENCLB303HHQ) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172770 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661244 Sample Accession: GSM5258788 ID: 305258788 5547. ATAC-seq from liver (ENCLB282VPH) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap liver tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172770 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661243 Sample Accession: GSM5258787 ID: 305258787 5548. ATAC-seq from lung (ENCLB071NVJ) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172769 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661242 Sample Accession: GSM5258786 ID: 305258786 5549. ATAC-seq from lung (ENCLB080OEI) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172769 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661241 Sample Accession: GSM5258785 ID: 305258785 5550. ATAC-seq from forebrain (ENCLB055ONH) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172767 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660975 Sample Accession: GSM5258783 ID: 305258783 5551. ATAC-seq from forebrain (ENCLB194THE) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172767 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660974 Sample Accession: GSM5258782 ID: 305258782 5552. ATAC-seq from liver (ENCLB291AYM) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172763 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661236 Sample Accession: GSM5258777 ID: 305258777 5553. ATAC-seq from liver (ENCLB024CQF) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172763 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661235 Sample Accession: GSM5258776 ID: 305258776 5554. ATAC-seq from midbrain (ENCLB488AGB) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172759 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661232 Sample Accession: GSM5258772 ID: 305258772 5555. ATAC-seq from midbrain (ENCLB277UUA) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172759 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661231 Sample Accession: GSM5258771 ID: 305258771 5556. ATAC-seq from heart (ENCLB223LXB) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172745 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661186 Sample Accession: GSM5258755 ID: 305258755 5557. ATAC-seq from heart (ENCLB030JRW) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172745 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661185 Sample Accession: GSM5258754 ID: 305258754 5558. ATAC-seq from lung (ENCLB517ADM) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) lung tissue Platform: GPL21103 Series: GSE172744 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258753/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660953 Sample Accession: GSM5258753 ID: 305258753 5559. ATAC-seq from lung (ENCLB224FWZ) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap lung tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172744 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258752/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660952 Sample Accession: GSM5258752 ID: 305258752 5560. ATAC-seq from stomach (ENCLB105JML) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172738 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660961 Sample Accession: GSM5258744 ID: 305258744 5561. ATAC-seq from stomach (ENCLB490MGZ) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap stomach tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172738 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660960 Sample Accession: GSM5258743 ID: 305258743 5562. ATAC-seq from hindbrain (ENCLB790VLV) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172723 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661045 Sample Accession: GSM5258725 ID: 305258725 5563. ATAC-seq from hindbrain (ENCLB264QMJ) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172723 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661044 Sample Accession: GSM5258724 ID: 305258724 5564. ATAC-seq from heart (ENCLB010DPI) Organism: Mus musculus Source name: Mus musculus strain B6NCrl mixed sex embryo (11.5 days) heart tissue Platform: GPL21103 Series: GSE172718 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660984 Sample Accession: GSM5258719 ID: 305258719 5565. ATAC-seq from heart (ENCLB452UUD) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172718 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660983 Sample Accession: GSM5258718 ID: 305258718 5566. ATAC-seq from midbrain (ENCLB849TXF) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172713 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661031 Sample Accession: GSM5258709 ID: 305258709 5567. ATAC-seq from midbrain (ENCLB091EMS) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172713 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661030 Sample Accession: GSM5258708 ID: 305258708 5568. ATAC-seq from forebrain (ENCLB252ZLC) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172703 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661021 Sample Accession: GSM5258696 ID: 305258696 5569. ATAC-seq from forebrain (ENCLB312MJN) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172703 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661020 Sample Accession: GSM5258695 ID: 305258695 5570. ATAC-seq from hindbrain (ENCLB962LKQ) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172698 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660924 Sample Accession: GSM5258688 ID: 305258688 5571. ATAC-seq from hindbrain (ENCLB625SZP) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172698 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660923 Sample Accession: GSM5258687 ID: 305258687 5572. ATAC-seq from intestine (ENCLB199HRA) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172694 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660918 Sample Accession: GSM5258682 ID: 305258682 5573. ATAC-seq from intestine (ENCLB362STB) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap intestine tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172694 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660917 Sample Accession: GSM5258681 ID: 305258681 5574. ATAC-seq from forebrain (ENCLB558DNK) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172688 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660901 Sample Accession: GSM5258665 ID: 305258665 5575. ATAC-seq from forebrain (ENCLB042MOW) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap forebrain tissue mixed sex postnatal (0 days) Platform: GPL21103 Series: GSE172688 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660900 Sample Accession: GSM5258664 ID: 305258664 5576. ATAC-seq from forebrain (ENCLB949MHR) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172676 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660878 Sample Accession: GSM5258642 ID: 305258642 5577. ATAC-seq from forebrain (ENCLB124JXC) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172676 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660877 Sample Accession: GSM5258641 ID: 305258641 5578. ATAC-seq from liver (ENCLB774WKA) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172670 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660868 Sample Accession: GSM5258632 ID: 305258632 5579. ATAC-seq from liver (ENCLB090ADG) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172670 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660867 Sample Accession: GSM5258631 ID: 305258631 5580. ATAC-seq from hindbrain (ENCLB513WMU) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap hindbrain tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172668 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660865 Sample Accession: GSM5258629 ID: 305258629 5581. ATAC-seq from hindbrain (ENCLB248EUT) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) hindbrain tissue Platform: GPL21103 Series: GSE172668 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660864 Sample Accession: GSM5258628 ID: 305258628 5582. ATAC-seq from heart (ENCLB228STB) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172664 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660859 Sample Accession: GSM5258623 ID: 305258623 5583. ATAC-seq from heart (ENCLB623FXD) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap heart tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172664 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660858 Sample Accession: GSM5258622 ID: 305258622 5584. ATAC-seq from heart (ENCLB520EXZ) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172663 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660857 Sample Accession: GSM5258621 ID: 305258621 5585. ATAC-seq from heart (ENCLB049MVV) Organism: Mus musculus Source name: Mus musculus strain B6NCrl heart tissue mixed sex embryo (13.5 days) Platform: GPL21103 Series: GSE172663 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660856 Sample Accession: GSM5258620 ID: 305258620 5586. ATAC-seq from limb (ENCLB085OJN) Organism: Mus musculus Source name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172659 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660849 Sample Accession: GSM5258613 ID: 305258613 5587. ATAC-seq from limb (ENCLB710VNY) Organism: Mus musculus Source name: Mus musculus strain B6NCrl limb tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172659 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660848 Sample Accession: GSM5258612 ID: 305258612 5588. ATAC-seq from liver (ENCLB555EYH) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) liver tissue Platform: GPL21103 Series: GSE172630 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660806 Sample Accession: GSM5258535 ID: 305258535 5589. ATAC-seq from liver (ENCLB200ODB) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) liver tissue Platform: GPL21103 Series: GSE172630 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660805 Sample Accession: GSM5258534 ID: 305258534 5590. ATAC-seq from liver (ENCLB441LCB) Organism: Mus musculus Source name: Mus musculus strain B6NCrl mixed sex embryo (11.5 days) liver tissue Platform: GPL21103 Series: GSE172627 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660802 Sample Accession: GSM5258511 ID: 305258511 5591. ATAC-seq from liver (ENCLB479OGV) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172627 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660801 Sample Accession: GSM5258510 ID: 305258510 5592. ATAC-seq from embryonic facial prominence (ENCLB434JPX) Organism: Mus musculus Source name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172625 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258508/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660799 Sample Accession: GSM5258508 ID: 305258508 5593. ATAC-seq from embryonic facial prominence (ENCLB105QYB) Organism: Mus musculus Source name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (12.5 days) Platform: GPL21103 Series: GSE172625 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660798 Sample Accession: GSM5258507 ID: 305258507 5594. ATAC-seq from kidney (ENCLB874ZPR) Organism: Mus musculus Source name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172616 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258483/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660780 Sample Accession: GSM5258483 ID: 305258483 5595. ATAC-seq from kidney (ENCLB024QLK) Organism: Mus musculus Source name: Mus musculus strain B6NCrl kidney tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172616 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660779 Sample Accession: GSM5258482 ID: 305258482 5596. ATAC-seq from neural tube (ENCLB692QBH) Organism: Mus musculus Source name: Mus musculus strain B6NCrl mixed sex embryo (11.5 days) neural tube tissue Platform: GPL21103 Series: GSE172610 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660755 Sample Accession: GSM5258476 ID: 305258476 5597. ATAC-seq from neural tube (ENCLB507LHR) Organism: Mus musculus Source name: Mus musculus strain B6NCrl neural tube tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172610 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660754 Sample Accession: GSM5258475 ID: 305258475 5598. ATAC-seq from forebrain (ENCLB477WAK) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172582 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660721 Sample Accession: GSM5258399 ID: 305258399 5599. ATAC-seq from forebrain (ENCLB512IZL) Organism: Mus musculus Source name: Mus musculus strain B6NCrl forebrain tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172582 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660720 Sample Accession: GSM5258398 ID: 305258398 5600. ATAC-seq from hindbrain (ENCLB044YJH) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172572 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660708 Sample Accession: GSM5258372 ID: 305258372 5601. ATAC-seq from hindbrain (ENCLB819YMR) Organism: Mus musculus Source name: Mus musculus strain B6NCrl hindbrain tissue mixed sex embryo (11.5 days) Platform: GPL21103 Series: GSE172572 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660707 Sample Accession: GSM5258371 ID: 305258371 5602. ATAC-seq from embryonic facial prominence (ENCLB741QPR) Organism: Mus musculus Source name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172562 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258360/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660696 Sample Accession: GSM5258360 ID: 305258360 5603. ATAC-seq from embryonic facial prominence (ENCLB931TGU) Organism: Mus musculus Source name: Mus musculus strain B6NCrl embryonic facial prominence tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172562 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660695 Sample Accession: GSM5258359 ID: 305258359 5604. ATAC-seq from kidney (ENCLB299QNB) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap kidney tissue mixed sex embryo (14.5 days) Platform: GPL21103 Series: GSE172561 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660694 Sample Accession: GSM5258358 ID: 305258358 5605. ATAC-seq from kidney (ENCLB087XNG) Organism: Mus musculus Source name: Mus musculus strain B6NTac;B6NCrl/Lap mixed sex embryo (14.5 days) kidney tissue Platform: GPL21103 Series: GSE172561 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258357/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660693 Sample Accession: GSM5258357 ID: 305258357 5606. ATAC-seq from stomach (ENCLB940TKW) Organism: Mus musculus Source name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172554 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660684 Sample Accession: GSM5258348 ID: 305258348 5607. ATAC-seq from stomach (ENCLB626GQL) Organism: Mus musculus Source name: Mus musculus strain B6NCrl stomach tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172554 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258347/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660683 Sample Accession: GSM5258347 ID: 305258347 5608. ATAC-seq from midbrain (ENCLB738SGH) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172535 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660661 Sample Accession: GSM5258304 ID: 305258304 5609. ATAC-seq from midbrain (ENCLB782TSA) Organism: Mus musculus Source name: Mus musculus strain B6NCrl midbrain tissue mixed sex embryo (15.5 days) Platform: GPL21103 Series: GSE172535 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660660 Sample Accession: GSM5258303 ID: 305258303 5610. ATAC-seq from liver (ENCLB286QAR) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172531 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660654 Sample Accession: GSM5258297 ID: 305258297 5611. ATAC-seq from liver (ENCLB903KLR) Organism: Mus musculus Source name: Mus musculus strain B6NCrl liver tissue mixed sex embryo (16.5 days) Platform: GPL21103 Series: GSE172531 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660653 Sample Accession: GSM5258296 ID: 305258296 5612. ATAC-seq from hematopoietic stem cell (ENCLB328JAB) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J adult (5-6 weeks) hematopoietic stem primary cell Platform: GPL19057 Series: GSE172843 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258888/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661322 Sample Accession: GSM5258888 ID: 305258888 5613. ATAC-seq from monocyte (ENCLB916UMC) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J adult (5-6 weeks) monocyte primary cell Platform: GPL19057 Series: GSE172821 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660931 Sample Accession: GSM5258859 ID: 305258859 5614. ATAC-seq from monocyte (ENCLB956IVR) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J adult (5-6 weeks) monocyte primary cell Platform: GPL19057 Series: GSE172821 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660930 Sample Accession: GSM5258858 ID: 305258858 5615. ATAC-seq from neutrophil (ENCLB325VLO) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J adult (5-6 weeks) neutrophil primary cell Platform: GPL19057 Series: GSE172782 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661255 Sample Accession: GSM5258801 ID: 305258801 5616. ATAC-seq from neutrophil (ENCLB037IIZ) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J adult (5-6 weeks) neutrophil primary cell Platform: GPL19057 Series: GSE172782 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661254 Sample Accession: GSM5258800 ID: 305258800 5617. ATAC-seq from HG03045 (ENCLB516DVB) Organism: Homo sapiens Source name: Homo sapiens HG03045 cell line Platform: GPL18573 Series: GSE173067 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661604 Sample Accession: GSM5259337 ID: 305259337 5618. ATAC-seq from GM18502 (ENCLB885ELZ) Organism: Homo sapiens Source name: Homo sapiens GM18502 cell line Platform: GPL18573 Series: GSE173046 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661564 Sample Accession: GSM5259257 ID: 305259257 5619. ATAC-seq from GM21723 (ENCLB688YYP) Organism: Homo sapiens Source name: Homo sapiens GM21723 cell line Platform: GPL18573 Series: GSE173044 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661563 Sample Accession: GSM5259255 ID: 305259255 5620. ATAC-seq from GM19452 (ENCLB567RZI) Organism: Homo sapiens Source name: Homo sapiens GM19452 cell line Platform: GPL18573 Series: GSE173043 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661562 Sample Accession: GSM5259254 ID: 305259254 5621. ATAC-seq from GM19351 (ENCLB489QSG) Organism: Homo sapiens Source name: Homo sapiens GM19351 cell line Platform: GPL18573 Series: GSE173041 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661561 Sample Accession: GSM5259252 ID: 305259252 5622. ATAC-seq from GM19463 (ENCLB928JOZ) Organism: Homo sapiens Source name: Homo sapiens GM19463 cell line Platform: GPL18573 Series: GSE173027 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661544 Sample Accession: GSM5259230 ID: 305259230 5623. ATAC-seq from GM19455 (ENCLB051WCF) Organism: Homo sapiens Source name: Homo sapiens GM19455 cell line Platform: GPL18573 Series: GSE173023 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259225/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661539 Sample Accession: GSM5259225 ID: 305259225 5624. ATAC-seq from GM18517 (ENCLB234NYC) Organism: Homo sapiens Source name: Homo sapiens GM18517 cell line Platform: GPL18573 Series: GSE173014 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661528 Sample Accession: GSM5259212 ID: 305259212 5625. ATAC-seq from GM18499 (ENCLB586IPF) Organism: Homo sapiens Source name: Homo sapiens GM18499 cell line Platform: GPL18573 Series: GSE173011 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661526 Sample Accession: GSM5259208 ID: 305259208 5626. ATAC-seq from HG03108 (ENCLB336PFU) Organism: Homo sapiens Source name: Homo sapiens HG03108 cell line Platform: GPL18573 Series: GSE173003 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661517 Sample Accession: GSM5259197 ID: 305259197 5627. ATAC-seq from GM21619 (ENCLB258KTE) Organism: Homo sapiens Source name: Homo sapiens GM21619 cell line Platform: GPL18573 Series: GSE173002 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660963 Sample Accession: GSM5259196 ID: 305259196 5628. ATAC-seq from GM19324 (ENCLB988ZFT) Organism: Homo sapiens Source name: Homo sapiens GM19324 cell line Platform: GPL18573 Series: GSE172990 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660935 Sample Accession: GSM5259179 ID: 305259179 5629. ATAC-seq from GM21515 (ENCLB797JGI) Organism: Homo sapiens Source name: Homo sapiens GM21515 cell line Platform: GPL18573 Series: GSE172986 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661501 Sample Accession: GSM5259175 ID: 305259175 5630. ATAC-seq from GM21447 (ENCLB325UWQ) Organism: Homo sapiens Source name: Homo sapiens GM21447 cell line Platform: GPL18573 Series: GSE172982 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661211 Sample Accession: GSM5259171 ID: 305259171 5631. ATAC-seq from GM21717 (ENCLB032SXH) Organism: Homo sapiens Source name: Homo sapiens GM21717 cell line Platform: GPL18573 Series: GSE172979 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660958 Sample Accession: GSM5259168 ID: 305259168 5632. ATAC-seq from HG02981 (ENCLB158LWW) Organism: Homo sapiens Source name: Homo sapiens HG02981 cell line Platform: GPL18573 Series: GSE172977 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661493 Sample Accession: GSM5259165 ID: 305259165 5633. ATAC-seq from HG02870 (ENCLB772NIL) Organism: Homo sapiens Source name: Homo sapiens HG02870 cell line Platform: GPL18573 Series: GSE172976 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661226 Sample Accession: GSM5259164 ID: 305259164 5634. ATAC-seq from GM18870 (ENCLB866SES) Organism: Homo sapiens Source name: Homo sapiens GM18870 cell line Platform: GPL18573 Series: GSE172975 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661492 Sample Accession: GSM5259163 ID: 305259163 5635. ATAC-seq from GM19025 (ENCLB544BDP) Organism: Homo sapiens Source name: Homo sapiens GM19025 cell line Platform: GPL18573 Series: GSE172970 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661487 Sample Accession: GSM5259156 ID: 305259156 5636. ATAC-seq from GM21529 (ENCLB359GKL) Organism: Homo sapiens Source name: Homo sapiens GM21529 cell line Platform: GPL18573 Series: GSE172966 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661482 Sample Accession: GSM5259151 ID: 305259151 5637. ATAC-seq from GM19043 (ENCLB908WMV) Organism: Homo sapiens Source name: Homo sapiens GM19043 cell line Platform: GPL18573 Series: GSE172962 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661225 Sample Accession: GSM5259140 ID: 305259140 5638. ATAC-seq from GM21526 (ENCLB243SMV) Organism: Homo sapiens Source name: Homo sapiens GM21526 cell line Platform: GPL18573 Series: GSE172959 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660973 Sample Accession: GSM5259136 ID: 305259136 5639. ATAC-seq from HG02588 (ENCLB788KSO) Organism: Homo sapiens Source name: Homo sapiens HG02588 cell line Platform: GPL18573 Series: GSE172954 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661464 Sample Accession: GSM5259130 ID: 305259130 5640. ATAC-seq from HG02763 (ENCLB754TXE) Organism: Homo sapiens Source name: Homo sapiens HG02763 cell line Platform: GPL18573 Series: GSE172952 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661463 Sample Accession: GSM5259128 ID: 305259128 5641. ATAC-seq from HG03159 (ENCLB814DLO) Organism: Homo sapiens Source name: Homo sapiens HG03159 cell line Platform: GPL18573 Series: GSE172949 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661461 Sample Accession: GSM5259124 ID: 305259124 5642. ATAC-seq from HG02571 (ENCLB289NML) Organism: Homo sapiens Source name: Homo sapiens HG02571 cell line Platform: GPL18573 Series: GSE172945 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661456 Sample Accession: GSM5259119 ID: 305259119 5643. ATAC-seq from HG03025 (ENCLB863TXE) Organism: Homo sapiens Source name: Homo sapiens HG03025 cell line Platform: GPL18573 Series: GSE172939 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661001 Sample Accession: GSM5259102 ID: 305259102 5644. ATAC-seq from GM21528 (ENCLB467TIC) Organism: Homo sapiens Source name: Homo sapiens GM21528 cell line Platform: GPL18573 Series: GSE172934 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661435 Sample Accession: GSM5259095 ID: 305259095 5645. ATAC-seq from HG02678 (ENCLB037USP) Organism: Homo sapiens Source name: Homo sapiens HG02678 cell line Platform: GPL18573 Series: GSE172925 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661425 Sample Accession: GSM5259082 ID: 305259082 5646. ATAC-seq from GM18498 (ENCLB265QMH) Organism: Homo sapiens Source name: Homo sapiens GM18498 cell line Platform: GPL18573 Series: GSE172913 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660982 Sample Accession: GSM5259060 ID: 305259060 5647. ATAC-seq from GM19328 (ENCLB303AZY) Organism: Homo sapiens Source name: Homo sapiens GM19328 cell line Platform: GPL18573 Series: GSE172904 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661197 Sample Accession: GSM5259038 ID: 305259038 5648. ATAC-seq from HG02938 (ENCLB138NST) Organism: Homo sapiens Source name: Homo sapiens HG02938 cell line Platform: GPL18573 Series: GSE172894 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661392 Sample Accession: GSM5259022 ID: 305259022 5649. ATAC-seq from GM18909 (ENCLB666BCI) Organism: Homo sapiens Source name: Homo sapiens GM18909 cell line Platform: GPL18573 Series: GSE172890 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661004 Sample Accession: GSM5259018 ID: 305259018 5650. ATAC-seq from HG03469 (ENCLB194BUL) Organism: Homo sapiens Source name: Homo sapiens HG03469 cell line Platform: GPL18573 Series: GSE172888 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661387 Sample Accession: GSM5259015 ID: 305259015 5651. ATAC-seq from HG02610 (ENCLB803SNI) Organism: Homo sapiens Source name: Homo sapiens HG02610 cell line Platform: GPL18573 Series: GSE172879 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661378 Sample Accession: GSM5258991 ID: 305258991 5652. ATAC-seq from HG03039 (ENCLB220SFB) Organism: Homo sapiens Source name: Homo sapiens HG03039 cell line Platform: GPL18573 Series: GSE172878 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661377 Sample Accession: GSM5258990 ID: 305258990 5653. ATAC-seq from GM21423 (ENCLB119UKM) Organism: Homo sapiens Source name: Homo sapiens GM21423 cell line Platform: GPL18573 Series: GSE172869 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660989 Sample Accession: GSM5258960 ID: 305258960 5654. ATAC-seq from HG03439 (ENCLB832WTW) Organism: Homo sapiens Source name: Homo sapiens HG03439 cell line Platform: GPL18573 Series: GSE172867 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661348 Sample Accession: GSM5258958 ID: 305258958 5655. ATAC-seq from GM19395 (ENCLB089PES) Organism: Homo sapiens Source name: Homo sapiens GM19395 cell line Platform: GPL18573 Series: GSE172856 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661335 Sample Accession: GSM5258905 ID: 305258905 5656. ATAC-seq from HG02852 (ENCLB155ICC) Organism: Homo sapiens Source name: Homo sapiens HG02852 cell line Platform: GPL18573 Series: GSE172846 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661326 Sample Accession: GSM5258892 ID: 305258892 5657. ATAC-seq from GM21825 (ENCLB923IYI) Organism: Homo sapiens Source name: Homo sapiens GM21825 cell line Platform: GPL18573 Series: GSE172841 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661006 Sample Accession: GSM5258885 ID: 305258885 5658. ATAC-seq from GM19035 (ENCLB907QJU) Organism: Homo sapiens Source name: Homo sapiens GM19035 cell line Platform: GPL18573 Series: GSE172839 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661318 Sample Accession: GSM5258883 ID: 305258883 5659. ATAC-seq from GM19467 (ENCLB556DHZ) Organism: Homo sapiens Source name: Homo sapiens GM19467 cell line Platform: GPL18573 Series: GSE172833 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661016 Sample Accession: GSM5258875 ID: 305258875 5660. ATAC-seq from GM19468 (ENCLB998IGQ) Organism: Homo sapiens Source name: Homo sapiens GM19468 cell line Platform: GPL18573 Series: GSE172829 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661307 Sample Accession: GSM5258870 ID: 305258870 5661. ATAC-seq from HG02759 (ENCLB181RBO) Organism: Homo sapiens Source name: Homo sapiens HG02759 cell line Platform: GPL18573 Series: GSE172826 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661305 Sample Accession: GSM5258867 ID: 305258867 5662. ATAC-seq from GM18861 (ENCLB005EUZ) Organism: Homo sapiens Source name: Homo sapiens GM18861 cell line Platform: GPL18573 Series: GSE172816 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258851/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661295 Sample Accession: GSM5258851 ID: 305258851 5663. ATAC-seq from HG03095 (ENCLB622EYE) Organism: Homo sapiens Source name: Homo sapiens HG03095 cell line Platform: GPL18573 Series: GSE172814 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661293 Sample Accession: GSM5258849 ID: 305258849 5664. ATAC-seq from GM19438 (ENCLB957DJP) Organism: Homo sapiens Source name: Homo sapiens GM19438 cell line Platform: GPL18573 Series: GSE172811 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661288 Sample Accession: GSM5258844 ID: 305258844 5665. ATAC-seq from HG03442 (ENCLB705UKX) Organism: Homo sapiens Source name: Homo sapiens HG03442 cell line Platform: GPL18573 Series: GSE172806 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661285 Sample Accession: GSM5258838 ID: 305258838 5666. ATAC-seq from GM18508 (ENCLB523QER) Organism: Homo sapiens Source name: Homo sapiens GM18508 cell line Platform: GPL18573 Series: GSE172805 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661284 Sample Accession: GSM5258837 ID: 305258837 5667. ATAC-seq from HG03520 (ENCLB551YOT) Organism: Homo sapiens Source name: Homo sapiens HG03520 cell line Platform: GPL18573 Series: GSE172804 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660968 Sample Accession: GSM5258836 ID: 305258836 5668. ATAC-seq from HG02970 (ENCLB026FKN) Organism: Homo sapiens Source name: Homo sapiens HG02970 cell line Platform: GPL18573 Series: GSE172803 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258835/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661283 Sample Accession: GSM5258835 ID: 305258835 5669. ATAC-seq from HG02943 (ENCLB143PIZ) Organism: Homo sapiens Source name: Homo sapiens HG02943 cell line Platform: GPL18573 Series: GSE172797 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258820/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661270 Sample Accession: GSM5258820 ID: 305258820 5670. ATAC-seq from GM21576 (ENCLB239KAZ) Organism: Homo sapiens Source name: Homo sapiens GM21576 cell line Platform: GPL18573 Series: GSE172796 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661269 Sample Accession: GSM5258819 ID: 305258819 5671. ATAC-seq from HG02840 (ENCLB872OZL) Organism: Homo sapiens Source name: Homo sapiens HG02840 cell line Platform: GPL18573 Series: GSE172793 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661265 Sample Accession: GSM5258815 ID: 305258815 5672. ATAC-seq from HG02885 (ENCLB793IOD) Organism: Homo sapiens Source name: Homo sapiens HG02885 cell line Platform: GPL18573 Series: GSE172788 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661261 Sample Accession: GSM5258810 ID: 305258810 5673. ATAC-seq from GM21360 (ENCLB454KGD) Organism: Homo sapiens Source name: Homo sapiens GM21360 cell line Platform: GPL18573 Series: GSE172775 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661249 Sample Accession: GSM5258793 ID: 305258793 5674. ATAC-seq from HG03432 (ENCLB149ECG) Organism: Homo sapiens Source name: Homo sapiens HG03432 cell line Platform: GPL18573 Series: GSE172773 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661247 Sample Accession: GSM5258791 ID: 305258791 5675. ATAC-seq from HG03139 (ENCLB607PAZ) Organism: Homo sapiens Source name: Homo sapiens HG03139 cell line Platform: GPL18573 Series: GSE172772 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661246 Sample Accession: GSM5258790 ID: 305258790 5676. ATAC-seq from GM19397 (ENCLB232RLJ) Organism: Homo sapiens Source name: Homo sapiens GM19397 cell line Platform: GPL18573 Series: GSE172768 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661628 Sample Accession: GSM5258784 ID: 305258784 5677. ATAC-seq from HG03460 (ENCLB378ZRB) Organism: Homo sapiens Source name: Homo sapiens HG03460 cell line Platform: GPL18573 Series: GSE172766 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661240 Sample Accession: GSM5258781 ID: 305258781 5678. ATAC-seq from HG03135 (ENCLB277OTG) Organism: Homo sapiens Source name: Homo sapiens HG03135 cell line Platform: GPL18573 Series: GSE172761 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660956 Sample Accession: GSM5258774 ID: 305258774 5679. ATAC-seq from HG03097 (ENCLB163NFM) Organism: Homo sapiens Source name: Homo sapiens HG03097 cell line Platform: GPL18573 Series: GSE172760 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661233 Sample Accession: GSM5258773 ID: 305258773 5680. ATAC-seq from HG03565 (ENCLB383XSO) Organism: Homo sapiens Source name: Homo sapiens HG03565 cell line Platform: GPL18573 Series: GSE172757 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661230 Sample Accession: GSM5258768 ID: 305258768 5681. ATAC-seq from HG03103 (ENCLB146FLK) Organism: Homo sapiens Source name: Homo sapiens HG03103 cell line Platform: GPL18573 Series: GSE172752 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661193 Sample Accession: GSM5258763 ID: 305258763 5682. ATAC-seq from HG02884 (ENCLB161KKY) Organism: Homo sapiens Source name: Homo sapiens HG02884 cell line Platform: GPL18573 Series: GSE172751 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661192 Sample Accession: GSM5258762 ID: 305258762 5683. ATAC-seq from HG03378 (ENCLB901VGA) Organism: Homo sapiens Source name: Homo sapiens HG03378 cell line Platform: GPL18573 Series: GSE172739 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661061 Sample Accession: GSM5258745 ID: 305258745 5684. ATAC-seq from GM19372 (ENCLB892QGW) Organism: Homo sapiens Source name: Homo sapiens GM19372 cell line Platform: GPL18573 Series: GSE172735 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661057 Sample Accession: GSM5258739 ID: 305258739 5685. ATAC-seq from HG03575 (ENCLB016JKK) Organism: Homo sapiens Source name: Homo sapiens HG03575 cell line Platform: GPL18573 Series: GSE172731 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661052 Sample Accession: GSM5258734 ID: 305258734 5686. ATAC-seq from HG02642 (ENCLB704NYS) Organism: Homo sapiens Source name: Homo sapiens HG02642 cell line Platform: GPL18573 Series: GSE172727 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660932 Sample Accession: GSM5258729 ID: 305258729 5687. ATAC-seq from HG02623 (ENCLB894PEX) Organism: Homo sapiens Source name: Homo sapiens HG02623 cell line Platform: GPL18573 Series: GSE172722 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661043 Sample Accession: GSM5258723 ID: 305258723 5688. ATAC-seq from HG03457 (ENCLB977YUJ) Organism: Homo sapiens Source name: Homo sapiens HG03457 cell line Platform: GPL18573 Series: GSE172720 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661041 Sample Accession: GSM5258721 ID: 305258721 5689. ATAC-seq from HG03521 (ENCLB217XEO) Organism: Homo sapiens Source name: Homo sapiens HG03521 cell line Platform: GPL18573 Series: GSE172719 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661040 Sample Accession: GSM5258720 ID: 305258720 5690. ATAC-seq from GM21737 (ENCLB860SQY) Organism: Homo sapiens Source name: Homo sapiens GM21737 cell line Platform: GPL18573 Series: GSE172710 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661027 Sample Accession: GSM5258705 ID: 305258705 5691. ATAC-seq from GM18505 (ENCLB813JNF) Organism: Homo sapiens Source name: Homo sapiens GM18505 cell line Platform: GPL18573 Series: GSE172702 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661239 Sample Accession: GSM5258694 ID: 305258694 5692. ATAC-seq from GM18519 (ENCLB051MRO) Organism: Homo sapiens Source name: Homo sapiens GM18519 cell line Platform: GPL18573 Series: GSE172700 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660928 Sample Accession: GSM5258692 ID: 305258692 5693. ATAC-seq from GM18868 (ENCLB292BIP) Organism: Homo sapiens Source name: Homo sapiens GM18868 cell line Platform: GPL18573 Series: GSE172696 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660920 Sample Accession: GSM5258684 ID: 305258684 5694. ATAC-seq from HG03175 (ENCLB149CCO) Organism: Homo sapiens Source name: Homo sapiens HG03175 cell line Platform: GPL18573 Series: GSE172679 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660890 Sample Accession: GSM5258654 ID: 305258654 5695. ATAC-seq from GM18873 (ENCLB551MJS) Organism: Homo sapiens Source name: Homo sapiens GM18873 cell line Platform: GPL18573 Series: GSE172674 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660874 Sample Accession: GSM5258638 ID: 305258638 5696. ATAC-seq from HG03280 (ENCLB405RMM) Organism: Homo sapiens Source name: Homo sapiens HG03280 cell line Platform: GPL18573 Series: GSE172669 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660866 Sample Accession: GSM5258630 ID: 305258630 5697. ATAC-seq from HG03196 (ENCLB650QKJ) Organism: Homo sapiens Source name: Homo sapiens HG03196 cell line Platform: GPL18573 Series: GSE172646 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660833 Sample Accession: GSM5258562 ID: 305258562 5698. ATAC-seq from HG03066 (ENCLB034LBF) Organism: Homo sapiens Source name: Homo sapiens HG03066 cell line Platform: GPL18573 Series: GSE172638 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660823 Sample Accession: GSM5258552 ID: 305258552 5699. ATAC-seq from HG02973 (ENCLB100MZO) Organism: Homo sapiens Source name: Homo sapiens HG02973 cell line Platform: GPL18573 Series: GSE172634 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660810 Sample Accession: GSM5258539 ID: 305258539 5700. ATAC-seq from HG03342 (ENCLB635ABL) Organism: Homo sapiens Source name: Homo sapiens HG03342 cell line Platform: GPL18573 Series: GSE172631 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660807 Sample Accession: GSM5258536 ID: 305258536 5701. ATAC-seq from HG02798 (ENCLB473DTY) Organism: Homo sapiens Source name: Homo sapiens HG02798 cell line Platform: GPL18573 Series: GSE172626 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258509/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660800 Sample Accession: GSM5258509 ID: 305258509 5702. ATAC-seq from HG03354 (ENCLB104TCJ) Organism: Homo sapiens Source name: Homo sapiens HG03354 cell line Platform: GPL18573 Series: GSE172623 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258504/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660795 Sample Accession: GSM5258504 ID: 305258504 5703. ATAC-seq from GM21390 (ENCLB637NLV) Organism: Homo sapiens Source name: Homo sapiens GM21390 cell line Platform: GPL18573 Series: GSE172620 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258492/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660783 Sample Accession: GSM5258492 ID: 305258492 5704. ATAC-seq from GM21381 (ENCLB974IGN) Organism: Homo sapiens Source name: Homo sapiens GM21381 cell line Platform: GPL18573 Series: GSE172603 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660750 Sample Accession: GSM5258428 ID: 305258428 5705. ATAC-seq from GM19023 (ENCLB995TGZ) Organism: Homo sapiens Source name: Homo sapiens GM19023 cell line Platform: GPL18573 Series: GSE172598 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660742 Sample Accession: GSM5258420 ID: 305258420 5706. ATAC-seq from HG03558 (ENCLB940WBY) Organism: Homo sapiens Source name: Homo sapiens HG03558 cell line Platform: GPL18573 Series: GSE172594 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660736 Sample Accession: GSM5258414 ID: 305258414 5707. ATAC-seq from GM21367 (ENCLB490LUG) Organism: Homo sapiens Source name: Homo sapiens GM21367 cell line Platform: GPL18573 Series: GSE172593 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660735 Sample Accession: GSM5258413 ID: 305258413 5708. ATAC-seq from GM21786 (ENCLB558KFY) Organism: Homo sapiens Source name: Homo sapiens GM21786 cell line Platform: GPL18573 Series: GSE172592 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660734 Sample Accession: GSM5258412 ID: 305258412 5709. ATAC-seq from GM18520 (ENCLB038TIU) Organism: Homo sapiens Source name: Homo sapiens GM18520 cell line Platform: GPL18573 Series: GSE172575 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660710 Sample Accession: GSM5258382 ID: 305258382 5710. ATAC-seq from GM18867 (ENCLB362GVU) Organism: Homo sapiens Source name: Homo sapiens GM18867 cell line Platform: GPL18573 Series: GSE172566 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660700 Sample Accession: GSM5258364 ID: 305258364 5711. ATAC-seq from HG03064 (ENCLB667BOC) Organism: Homo sapiens Source name: Homo sapiens HG03064 cell line Platform: GPL18573 Series: GSE172559 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258353/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660689 Sample Accession: GSM5258353 ID: 305258353 5712. ATAC-seq from GM18907 (ENCLB518JMD) Organism: Homo sapiens Source name: Homo sapiens GM18907 cell line Platform: GPL18573 Series: GSE172556 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660687 Sample Accession: GSM5258351 ID: 305258351 5713. ATAC-seq from GM18858 (ENCLB748VDD) Organism: Homo sapiens Source name: Homo sapiens GM18858 cell line Platform: GPL18573 Series: GSE172553 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660682 Sample Accession: GSM5258346 ID: 305258346 5714. ATAC-seq from HG03571 (ENCLB839MLB) Organism: Homo sapiens Source name: Homo sapiens HG03571 cell line Platform: GPL18573 Series: GSE172546 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660672 Sample Accession: GSM5258336 ID: 305258336 5715. ATAC-seq from HG03060 (ENCLB268ESU) Organism: Homo sapiens Source name: Homo sapiens HG03060 cell line Platform: GPL18573 Series: GSE172538 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660665 Sample Accession: GSM5258308 ID: 305258308 5716. ATAC-seq from GM18511 (ENCLB235GRC) Organism: Homo sapiens Source name: Homo sapiens GM18511 cell line Platform: GPL18573 Series: GSE172518 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660641 Sample Accession: GSM5258278 ID: 305258278 5717. ATAC-seq from prostate gland (ENCLB056OWY) Organism: Homo sapiens Source name: Homo sapiens prostate gland tissue male adult (54 years) Platform: GPL11154 Series: GSE173068 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661605 Sample Accession: GSM5259338 ID: 305259338 5718. ATAC-seq from adrenal gland (ENCLB217RTK) Organism: Homo sapiens Source name: Homo sapiens adrenal gland tissue female adult (51 year) Platform: GPL11154 Series: GSE172963 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661472 Sample Accession: GSM5259141 ID: 305259141 5719. ATAC-seq from body of pancreas (ENCLB946AFA) Organism: Homo sapiens Source name: Homo sapiens body of pancreas tissue male adult (37 years) Platform: GPL11154 Series: GSE172855 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661334 Sample Accession: GSM5258904 ID: 305258904 5720. ATAC-seq from thoracic aorta (ENCLB573HMC) Organism: Homo sapiens Source name: Homo sapiens male adult (54 years) thoracic aorta tissue Platform: GPL11154 Series: GSE172765 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661238 Sample Accession: GSM5258780 ID: 305258780 5721. ATAC-seq from thoracic aorta (ENCLB508SCY) Organism: Homo sapiens Source name: Homo sapiens male adult (54 years) thoracic aorta tissue Platform: GPL11154 Series: GSE172765 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661237 Sample Accession: GSM5258779 ID: 305258779 5722. ATAC-seq from esophagus muscularis mucosa (ENCLB464LMC) Organism: Homo sapiens Source name: Homo sapiens male adult (54 years) esophagus muscularis mucosa tissue Platform: GPL11154 Series: GSE172764 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661227 Sample Accession: GSM5258778 ID: 305258778 5723. ATAC-seq from body of pancreas (ENCLB820SGQ) Organism: Homo sapiens Source name: Homo sapiens body of pancreas tissue female adult (53 years) Platform: GPL11154 Series: GSE172605 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660752 Sample Accession: GSM5258434 ID: 305258434 5724. ATAC-seq from frontal cortex (ENCLB601PHH) Organism: Mus musculus Source name: Mus musculus strain B6NCrl adult frontal cortex tissue Platform: GPL17021 Series: GSE172852 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661332 Sample Accession: GSM5258900 ID: 305258900 5725. ATAC-seq from frontal cortex (ENCLB538BIG) Organism: Mus musculus Source name: Mus musculus strain B6NCrl adult frontal cortex tissue Platform: GPL17021 Series: GSE172852 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661331 Sample Accession: GSM5258899 ID: 305258899 5726. ATAC-seq from cerebellum (ENCLB371AUY) Organism: Mus musculus Source name: Mus musculus strain B6NCrl adult cerebellum tissue Platform: GPL17021 Series: GSE172667 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660863 Sample Accession: GSM5258627 ID: 305258627 5727. ATAC-seq from cerebellum (ENCLB488NUD) Organism: Mus musculus Source name: Mus musculus strain B6NCrl adult cerebellum tissue Platform: GPL17021 Series: GSE172667 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660862 Sample Accession: GSM5258626 ID: 305258626 5728. ATAC-seq from inflammation-experienced regulatory T-cells (ENCLB567UUL) Organism: Mus musculus Source name: Mus musculus strain Foxp3CreERT2 x Rosa26YFP male adult (6 months) inflammation-experienced regulatory T-cells primary cell originated from bone marrow hematopoietic cell Platform: GPL13112 Series: GSE173064 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661603 Sample Accession: GSM5259310 ID: 305259310 5729. ATAC-seq from inflammation-experienced regulatory T-cells (ENCLB333KTT) Organism: Mus musculus Source name: Mus musculus strain Foxp3CreERT2 x Rosa26YFP male adult (6 months) inflammation-experienced regulatory T-cells primary cell originated from bone marrow hematopoietic cell Platform: GPL13112 Series: GSE173064 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661602 Sample Accession: GSM5259309 ID: 305259309 5730. ATAC-seq from hematopoietic stem cell (ENCLB478MDQ) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) hematopoietic stem primary cell Platform: GPL13112 Series: GSE173040 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661560 Sample Accession: GSM5259251 ID: 305259251 5731. ATAC-seq from hematopoietic stem cell (ENCLB148VRF) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) hematopoietic stem primary cell Platform: GPL13112 Series: GSE173040 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661559 Sample Accession: GSM5259250 ID: 305259250 5732. ATAC-seq from megakaryocyte progenitor cell (ENCLB667KAT) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte progenitor primary cell Platform: GPL13112 Series: GSE173037 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661557 Sample Accession: GSM5259246 ID: 305259246 5733. ATAC-seq from megakaryocyte progenitor cell (ENCLB577TBZ) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte progenitor primary cell Platform: GPL13112 Series: GSE173037 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661556 Sample Accession: GSM5259245 ID: 305259245 5734. ATAC-seq from regulatory T cell (ENCLB346WUY) Organism: Mus musculus Source name: Mus musculus strain Foxp3CreERT2 x Rosa26YFP male adult (4 months) regulatory T primary cell originated from bone marrow hematopoietic cell Platform: GPL13112 Series: GSE173036 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660940 Sample Accession: GSM5259244 ID: 305259244 5735. ATAC-seq from regulatory T cell (ENCLB661PNR) Organism: Mus musculus Source name: Mus musculus strain Foxp3CreERT2 x Rosa26YFP male adult (4 months) regulatory T primary cell originated from bone marrow hematopoietic cell Platform: GPL13112 Series: GSE173036 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660939 Sample Accession: GSM5259243 ID: 305259243 5736. ATAC-seq from G1E-ER4 (ENCLB025IJK) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J G1E-ER4 cell line treated with 10 nM 17Beta-estradiol for 24 hours Platform: GPL13112 Series: GSE172992 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661507 Sample Accession: GSM5259182 ID: 305259182 5737. ATAC-seq from G1E-ER4 (ENCLB059TNV) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J G1E-ER4 cell line treated with 10 nM 17Beta-estradiol for 24 hours Platform: GPL13112 Series: GSE172992 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661506 Sample Accession: GSM5259181 ID: 305259181 5738. ATAC-seq from common myeloid progenitor (ENCLB897KAA) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) common myeloid progenitor primary cell Platform: GPL13112 Series: GSE172887 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660948 Sample Accession: GSM5259014 ID: 305259014 5739. ATAC-seq from common myeloid progenitor (ENCLB182ZZO) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) common myeloid progenitor primary cell Platform: GPL13112 Series: GSE172887 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660947 Sample Accession: GSM5259013 ID: 305259013 5740. ATAC-seq from hematopoietic stem cell (ENCLB242XPG) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J adult (5-6 weeks) hematopoietic stem primary cell Platform: GPL13112 Series: GSE172843 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661321 Sample Accession: GSM5258887 ID: 305258887 5741. ATAC-seq from erythroid progenitor cell (ENCLB367TWL) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) erythroid progenitor primary cell Platform: GPL13112 Series: GSE172818 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660988 Sample Accession: GSM5258855 ID: 305258855 5742. ATAC-seq from erythroid progenitor cell (ENCLB430KLB) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) erythroid progenitor primary cell Platform: GPL13112 Series: GSE172818 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660987 Sample Accession: GSM5258854 ID: 305258854 5743. ATAC-seq from activated regulatory T-cells (ENCLB480YDY) Organism: Mus musculus Source name: Mus musculus strain Foxp3CreERT2 x Rosa26YFP male adult (4 months) activated regulatory T-cells primary cell originated from bone marrow hematopoietic cell Platform: GPL13112 Series: GSE172740 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661181 Sample Accession: GSM5258747 ID: 305258747 5744. ATAC-seq from activated regulatory T-cells (ENCLB964EWB) Organism: Mus musculus Source name: Mus musculus strain Foxp3CreERT2 x Rosa26YFP male adult (4 months) activated regulatory T-cells primary cell originated from bone marrow hematopoietic cell Platform: GPL13112 Series: GSE172740 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661180 Sample Accession: GSM5258746 ID: 305258746 5745. ATAC-seq from erythroblast (ENCLB228WLV) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) erythroblast primary cell Platform: GPL13112 Series: GSE172658 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660846 Sample Accession: GSM5258611 ID: 305258611 5746. ATAC-seq from erythroblast (ENCLB986ZTD) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) erythroblast primary cell Platform: GPL13112 Series: GSE172658 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660845 Sample Accession: GSM5258610 ID: 305258610 5747. ATAC-seq from megakaryocyte-erythroid progenitor cell (ENCLB094NVU) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte-erythroid progenitor primary cell Platform: GPL13112 Series: GSE172657 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660844 Sample Accession: GSM5258609 ID: 305258609 5748. ATAC-seq from megakaryocyte-erythroid progenitor cell (ENCLB398NWK) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte-erythroid progenitor primary cell Platform: GPL13112 Series: GSE172657 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660843 Sample Accession: GSM5258608 ID: 305258608 5749. ATAC-seq from G1E (ENCLB427FAG) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J G1E cell line Platform: GPL13112 Series: GSE172597 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660741 Sample Accession: GSM5258419 ID: 305258419 5750. ATAC-seq from G1E (ENCLB898MFQ) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J G1E cell line Platform: GPL13112 Series: GSE172597 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660740 Sample Accession: GSM5258418 ID: 305258418 5751. ATAC-seq from megakaryocyte (ENCLB307DIB) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte primary cell Platform: GPL13112 Series: GSE172576 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660712 Sample Accession: GSM5258384 ID: 305258384 5752. ATAC-seq from megakaryocyte (ENCLB313GIY) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) megakaryocyte primary cell Platform: GPL13112 Series: GSE172576 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660711 Sample Accession: GSM5258383 ID: 305258383 5753. ATAC-seq from granulocyte monocyte progenitor cell (ENCLB903ZWV) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) granulocyte monocyte progenitor primary cell Platform: GPL13112 Series: GSE172547 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660674 Sample Accession: GSM5258338 ID: 305258338 5754. ATAC-seq from granulocyte monocyte progenitor cell (ENCLB343DOZ) Organism: Mus musculus Source name: Mus musculus strain C57BL/6J male adult (5-6 weeks) granulocyte monocyte progenitor primary cell Platform: GPL13112 Series: GSE172547 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660673 Sample Accession: GSM5258337 ID: 305258337 5755. ATAC-seq from K562 (ENCLB837TGO) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Vorinostat for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173058 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661591 Sample Accession: GSM5259295 ID: 305259295 5756. ATAC-seq from K562 (ENCLB346VBL) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Vorinostat for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173058 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661590 Sample Accession: GSM5259294 ID: 305259294 5757. ATAC-seq from K562 (ENCLB932AIV) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173050 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661572 Sample Accession: GSM5259265 ID: 305259265 5758. ATAC-seq from K562 (ENCLB547DGS) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173050 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661571 Sample Accession: GSM5259264 ID: 305259264 5759. ATAC-seq from K562 (ENCLB715XYZ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM JQ1 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173048 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661568 Sample Accession: GSM5259261 ID: 305259261 5760. ATAC-seq from K562 (ENCLB088UGY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM JQ1 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173048 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661567 Sample Accession: GSM5259260 ID: 305259260 5761. ATAC-seq from left cardiac atrium (ENCLB343XPV) Organism: Homo sapiens Source name: Homo sapiens female adult (58 years) left cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE173039 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660997 Sample Accession: GSM5259249 ID: 305259249 5762. ATAC-seq from left cardiac atrium (ENCLB209VBU) Organism: Homo sapiens Source name: Homo sapiens female adult (58 years) left cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE173039 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660996 Sample Accession: GSM5259248 ID: 305259248 5763. ATAC-seq from K562 (ENCLB421EOW) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173035 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661555 Sample Accession: GSM5259242 ID: 305259242 5764. ATAC-seq from K562 (ENCLB932FSV) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173035 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661554 Sample Accession: GSM5259241 ID: 305259241 5765. ATAC-seq from right cardiac atrium (ENCLB867NFM) Organism: Homo sapiens Source name: Homo sapiens male adult (40 years) right cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE173031 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661551 Sample Accession: GSM5259237 ID: 305259237 5766. ATAC-seq from right cardiac atrium (ENCLB836MQU) Organism: Homo sapiens Source name: Homo sapiens male adult (40 years) right cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE173031 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661550 Sample Accession: GSM5259236 ID: 305259236 5767. ATAC-seq from K562 (ENCLB493UKS) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173029 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661548 Sample Accession: GSM5259234 ID: 305259234 5768. ATAC-seq from K562 (ENCLB043NKJ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173029 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259233/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661547 Sample Accession: GSM5259233 ID: 305259233 5769. ATAC-seq from K562 (ENCLB227YXU) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM NCT-503 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173020 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661537 Sample Accession: GSM5259222 ID: 305259222 5770. ATAC-seq from K562 (ENCLB467DHS) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM NCT-503 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173020 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661536 Sample Accession: GSM5259221 ID: 305259221 5771. ATAC-seq from K562 (ENCLB865LPK) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173017 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661532 Sample Accession: GSM5259217 ID: 305259217 5772. ATAC-seq from K562 (ENCLB082SCH) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173017 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661531 Sample Accession: GSM5259216 ID: 305259216 5773. ATAC-seq from K562 (ENCLB646KUH) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173013 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660937 Sample Accession: GSM5259211 ID: 305259211 5774. ATAC-seq from K562 (ENCLB196CDL) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173013 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660936 Sample Accession: GSM5259210 ID: 305259210 5775. ATAC-seq from K562 (ENCLB958CLN) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173009 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661524 Sample Accession: GSM5259206 ID: 305259206 5776. ATAC-seq from K562 (ENCLB965NIT) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173009 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661523 Sample Accession: GSM5259205 ID: 305259205 5777. ATAC-seq from K562 (ENCLB531ZTX) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173006 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661520 Sample Accession: GSM5259202 ID: 305259202 5778. ATAC-seq from K562 (ENCLB320QQS) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173006 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661519 Sample Accession: GSM5259201 ID: 305259201 5779. ATAC-seq from K562 (ENCLB415GUF) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM JQ1 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173005 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259200/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661019 Sample Accession: GSM5259200 ID: 305259200 5780. ATAC-seq from K562 (ENCLB758LMR) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM JQ1 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE173005 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259199/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661018 Sample Accession: GSM5259199 ID: 305259199 5781. ATAC-seq from heart right ventricle (ENCLB801XWC) Organism: Homo sapiens Source name: Homo sapiens female adult (46 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE173000 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661515 Sample Accession: GSM5259194 ID: 305259194 5782. ATAC-seq from heart right ventricle (ENCLB102CJI) Organism: Homo sapiens Source name: Homo sapiens female adult (46 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE173000 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661514 Sample Accession: GSM5259193 ID: 305259193 5783. ATAC-seq from K562 (ENCLB000KIJ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172978 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661495 Sample Accession: GSM5259167 ID: 305259167 5784. ATAC-seq from K562 (ENCLB706RUO) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172978 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661494 Sample Accession: GSM5259166 ID: 305259166 5785. ATAC-seq from K562 (ENCLB155PWJ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Vorinostat for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172973 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660986 Sample Accession: GSM5259161 ID: 305259161 5786. ATAC-seq from K562 (ENCLB311MMF) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Vorinostat for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172973 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660985 Sample Accession: GSM5259160 ID: 305259160 5787. ATAC-seq from K562 (ENCLB150DQQ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172971 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661489 Sample Accession: GSM5259158 ID: 305259158 5788. ATAC-seq from K562 (ENCLB629OSP) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172971 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661488 Sample Accession: GSM5259157 ID: 305259157 5789. ATAC-seq from K562 (ENCLB601QWI) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172960 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661470 Sample Accession: GSM5259138 ID: 305259138 5790. ATAC-seq from K562 (ENCLB232ZQN) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172960 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661469 Sample Accession: GSM5259137 ID: 305259137 5791. ATAC-seq from K562 (ENCLB408KYD) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172957 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661467 Sample Accession: GSM5259134 ID: 305259134 5792. ATAC-seq from K562 (ENCLB976JAN) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172957 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661466 Sample Accession: GSM5259133 ID: 305259133 5793. ATAC-seq from K562 (ENCLB812BUI) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 5 uM C646 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172946 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661458 Sample Accession: GSM5259121 ID: 305259121 5794. ATAC-seq from K562 (ENCLB212MMB) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 5 uM C646 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172946 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661457 Sample Accession: GSM5259120 ID: 305259120 5795. ATAC-seq from SK-N-SH (ENCLB815ZKS) Organism: Homo sapiens Source name: Homo sapiens SK-N-SH cell line treated with 6 uM all-trans-retinoic acid for 48 hours Platform: GPL24676 Series: GSE172943 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661445 Sample Accession: GSM5259108 ID: 305259108 5796. ATAC-seq from SK-N-SH (ENCLB252SEN) Organism: Homo sapiens Source name: Homo sapiens SK-N-SH cell line treated with 6 uM all-trans-retinoic acid for 48 hours Platform: GPL24676 Series: GSE172943 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661444 Sample Accession: GSM5259107 ID: 305259107 5797. ATAC-seq from SK-N-SH (ENCLB575VWN) Organism: Homo sapiens Source name: Homo sapiens SK-N-SH cell line treated with 6 uM all-trans-retinoic acid for 48 hours Platform: GPL24676 Series: GSE172943 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259106/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661443 Sample Accession: GSM5259106 ID: 305259106 5798. ATAC-seq from K562 (ENCLB941QFV) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172937 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661439 Sample Accession: GSM5259100 ID: 305259100 5799. ATAC-seq from K562 (ENCLB938RJN) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172937 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661438 Sample Accession: GSM5259099 ID: 305259099 5800. ATAC-seq from K562 (ENCLB933NPK) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172932 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661434 Sample Accession: GSM5259092 ID: 305259092 5801. ATAC-seq from K562 (ENCLB957NZI) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172932 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661433 Sample Accession: GSM5259091 ID: 305259091 5802. ATAC-seq from K562 (ENCLB955WCA) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM ARS-853 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172927 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259086/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661429 Sample Accession: GSM5259086 ID: 305259086 5803. ATAC-seq from K562 (ENCLB155ABW) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM ARS-853 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172927 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661428 Sample Accession: GSM5259085 ID: 305259085 5804. ATAC-seq from K562 (ENCLB048URT) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172926 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661427 Sample Accession: GSM5259084 ID: 305259084 5805. ATAC-seq from K562 (ENCLB950LWI) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172926 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661426 Sample Accession: GSM5259083 ID: 305259083 5806. ATAC-seq from K562 (ENCLB006SCY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM JQ1 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172918 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259067/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661422 Sample Accession: GSM5259067 ID: 305259067 5807. ATAC-seq from K562 (ENCLB223VRN) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM JQ1 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172918 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259066/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661421 Sample Accession: GSM5259066 ID: 305259066 5808. ATAC-seq from K562 (ENCLB134VCV) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172898 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661398 Sample Accession: GSM5259029 ID: 305259029 5809. ATAC-seq from K562 (ENCLB047OEL) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172898 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661397 Sample Accession: GSM5259028 ID: 305259028 5810. ATAC-seq from K562 (ENCLB211YHL) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM JQ1 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172897 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661396 Sample Accession: GSM5259027 ID: 305259027 5811. ATAC-seq from K562 (ENCLB030VSR) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM JQ1 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172897 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661395 Sample Accession: GSM5259026 ID: 305259026 5812. ATAC-seq from K562 (ENCLB875AFE) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172895 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661394 Sample Accession: GSM5259024 ID: 305259024 5813. ATAC-seq from K562 (ENCLB716NVW) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172895 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5259nnn/GSM5259023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661393 Sample Accession: GSM5259023 ID: 305259023 5814. ATAC-seq from lung (ENCLB812SRE) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE172864 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661344 Sample Accession: GSM5258954 ID: 305258954 5815. ATAC-seq from lung (ENCLB189BJR) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE172864 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661343 Sample Accession: GSM5258953 ID: 305258953 5816. ATAC-seq from K562 (ENCLB654QFK) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Vorinostat for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172860 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661340 Sample Accession: GSM5258931 ID: 305258931 5817. ATAC-seq from K562 (ENCLB725ASC) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Vorinostat for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172860 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661339 Sample Accession: GSM5258930 ID: 305258930 5818. ATAC-seq from K562 (ENCLB740XWQ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172848 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661328 Sample Accession: GSM5258895 ID: 305258895 5819. ATAC-seq from K562 (ENCLB939BHO) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172848 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661327 Sample Accession: GSM5258894 ID: 305258894 5820. ATAC-seq from K562 (ENCLB292YOI) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 5 uM C646 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172831 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661309 Sample Accession: GSM5258873 ID: 305258873 5821. ATAC-seq from K562 (ENCLB838USY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 5 uM C646 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172831 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661308 Sample Accession: GSM5258872 ID: 305258872 5822. ATAC-seq from K562 (ENCLB135OJM) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172825 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661304 Sample Accession: GSM5258866 ID: 305258866 5823. ATAC-seq from K562 (ENCLB147XGY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172825 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661303 Sample Accession: GSM5258865 ID: 305258865 5824. ATAC-seq from K562 (ENCLB948MZK) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172817 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661297 Sample Accession: GSM5258853 ID: 305258853 5825. ATAC-seq from K562 (ENCLB219DJZ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172817 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661296 Sample Accession: GSM5258852 ID: 305258852 5826. ATAC-seq from K562 (ENCLB151NQB) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172795 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258818/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661268 Sample Accession: GSM5258818 ID: 305258818 5827. ATAC-seq from K562 (ENCLB939LPS) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172795 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661267 Sample Accession: GSM5258817 ID: 305258817 5828. ATAC-seq from heart left ventricle (ENCLB660OSN) Organism: Homo sapiens Source name: Homo sapiens female adult (66 years) heart left ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE172783 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661257 Sample Accession: GSM5258803 ID: 305258803 5829. ATAC-seq from heart left ventricle (ENCLB836NPL) Organism: Homo sapiens Source name: Homo sapiens female adult (66 years) heart left ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE172783 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661256 Sample Accession: GSM5258802 ID: 305258802 5830. ATAC-seq from K562 (ENCLB935LKQ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172758 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661196 Sample Accession: GSM5258770 ID: 305258770 5831. ATAC-seq from K562 (ENCLB683WZE) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172758 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661195 Sample Accession: GSM5258769 ID: 305258769 5832. ATAC-seq from K562 (ENCLB539JGX) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Vorinostat for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172750 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661191 Sample Accession: GSM5258761 ID: 305258761 5833. ATAC-seq from K562 (ENCLB061AIL) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Vorinostat for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172750 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661190 Sample Accession: GSM5258760 ID: 305258760 5834. ATAC-seq from K562 (ENCLB139DPW) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172743 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661184 Sample Accession: GSM5258751 ID: 305258751 5835. ATAC-seq from K562 (ENCLB721FLL) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Bortezomib for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172743 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258750/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661183 Sample Accession: GSM5258750 ID: 305258750 5836. ATAC-seq from K562 (ENCLB046WRD) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM EED226 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172736 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661059 Sample Accession: GSM5258741 ID: 305258741 5837. ATAC-seq from K562 (ENCLB122TZI) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM EED226 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172736 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661058 Sample Accession: GSM5258740 ID: 305258740 5838. ATAC-seq from WTC11 (ENCLB745RLS) Organism: Homo sapiens Source name: Homo sapiens WTC11 cell line genetically modified (insertion) using TALEN Platform: GPL24676 Series: GSE172732 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661054 Sample Accession: GSM5258736 ID: 305258736 5839. ATAC-seq from WTC11 (ENCLB868CJL) Organism: Homo sapiens Source name: Homo sapiens WTC11 cell line genetically modified (insertion) using TALEN Platform: GPL24676 Series: GSE172732 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661053 Sample Accession: GSM5258735 ID: 305258735 5840. ATAC-seq from K562 (ENCLB116OCX) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172729 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661050 Sample Accession: GSM5258732 ID: 305258732 5841. ATAC-seq from K562 (ENCLB309PPT) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172729 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661049 Sample Accession: GSM5258731 ID: 305258731 5842. ATAC-seq from SK-N-SH (ENCLB886RHE) Organism: Homo sapiens Source name: Homo sapiens SK-N-SH cell line treated with 6 uM all-trans-retinoic acid for 48 hours Platform: GPL24676 Series: GSE172714 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661034 Sample Accession: GSM5258712 ID: 305258712 5843. ATAC-seq from SK-N-SH (ENCLB772RMG) Organism: Homo sapiens Source name: Homo sapiens SK-N-SH cell line treated with 6 uM all-trans-retinoic acid for 48 hours Platform: GPL24676 Series: GSE172714 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661033 Sample Accession: GSM5258711 ID: 305258711 5844. ATAC-seq from SK-N-SH (ENCLB543XOK) Organism: Homo sapiens Source name: Homo sapiens SK-N-SH cell line treated with 6 uM all-trans-retinoic acid for 48 hours Platform: GPL24676 Series: GSE172714 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10661032 Sample Accession: GSM5258710 ID: 305258710 5845. ATAC-seq from K562 (ENCLB550ELU) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172707 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660999 Sample Accession: GSM5258701 ID: 305258701 5846. ATAC-seq from K562 (ENCLB827SLZ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172707 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660998 Sample Accession: GSM5258700 ID: 305258700 5847. ATAC-seq from K562 (ENCLB494NSR) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Methotrexate for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172697 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660922 Sample Accession: GSM5258686 ID: 305258686 5848. ATAC-seq from K562 (ENCLB653OSD) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Methotrexate for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172697 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660921 Sample Accession: GSM5258685 ID: 305258685 5849. ATAC-seq from K562 (ENCLB866EWB) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172691 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660906 Sample Accession: GSM5258670 ID: 305258670 5850. ATAC-seq from K562 (ENCLB416NDP) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172691 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660905 Sample Accession: GSM5258669 ID: 305258669 5851. ATAC-seq from K562 (ENCLB573VFY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Methotrexate for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172686 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660898 Sample Accession: GSM5258662 ID: 305258662 5852. ATAC-seq from K562 (ENCLB770JQW) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Methotrexate for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172686 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660897 Sample Accession: GSM5258661 ID: 305258661 5853. ATAC-seq from Right ventricle myocardium superior (ENCLB679DQO) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) Right ventricle myocardium superior tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE172675 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660876 Sample Accession: GSM5258640 ID: 305258640 5854. ATAC-seq from Right ventricle myocardium superior (ENCLB745UIH) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) Right ventricle myocardium superior tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE172675 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660875 Sample Accession: GSM5258639 ID: 305258639 5855. ATAC-seq from K562 (ENCLB626AGV) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172673 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660873 Sample Accession: GSM5258637 ID: 305258637 5856. ATAC-seq from K562 (ENCLB536KHU) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 100 nM GSK J4 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172673 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660872 Sample Accession: GSM5258636 ID: 305258636 5857. ATAC-seq from K562 (ENCLB827XOY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 5 uM C646 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172672 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660871 Sample Accession: GSM5258635 ID: 305258635 5858. ATAC-seq from K562 (ENCLB808KRZ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 5 uM C646 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172672 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660870 Sample Accession: GSM5258634 ID: 305258634 5859. ATAC-seq from K562 (ENCLB571UDU) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM NCT-503 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172661 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660853 Sample Accession: GSM5258617 ID: 305258617 5860. ATAC-seq from K562 (ENCLB528RAR) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM NCT-503 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172661 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660852 Sample Accession: GSM5258616 ID: 305258616 5861. ATAC-seq from K562 (ENCLB998RAR) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172660 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660851 Sample Accession: GSM5258615 ID: 305258615 5862. ATAC-seq from K562 (ENCLB916UFN) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172660 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660850 Sample Accession: GSM5258614 ID: 305258614 5863. ATAC-seq from K562 (ENCLB719JWA) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172652 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660841 Sample Accession: GSM5258570 ID: 305258570 5864. ATAC-seq from K562 (ENCLB385IRW) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172652 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660840 Sample Accession: GSM5258569 ID: 305258569 5865. ATAC-seq from K562 (ENCLB760ORB) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172645 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660832 Sample Accession: GSM5258561 ID: 305258561 5866. ATAC-seq from K562 (ENCLB762GSY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172645 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660831 Sample Accession: GSM5258560 ID: 305258560 5867. ATAC-seq from K562 (ENCLB411SJU) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172628 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258513/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660804 Sample Accession: GSM5258513 ID: 305258513 5868. ATAC-seq from K562 (ENCLB335AZR) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 2.5 uM Galeterone for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172628 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660803 Sample Accession: GSM5258512 ID: 305258512 5869. ATAC-seq from K562 (ENCLB829FMV) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM EED226 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172624 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258506/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660797 Sample Accession: GSM5258506 ID: 305258506 5870. ATAC-seq from K562 (ENCLB170PBR) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM EED226 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172624 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660796 Sample Accession: GSM5258505 ID: 305258505 5871. ATAC-seq from K562 (ENCLB254XFB) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM SGC-CBP30 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172602 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660749 Sample Accession: GSM5258427 ID: 305258427 5872. ATAC-seq from K562 (ENCLB972WJJ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM SGC-CBP30 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172602 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660748 Sample Accession: GSM5258426 ID: 305258426 5873. ATAC-seq from K562 (ENCLB301WPB) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172601 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258425/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660747 Sample Accession: GSM5258425 ID: 305258425 5874. ATAC-seq from K562 (ENCLB933CKG) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Panobinostat for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172601 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660746 Sample Accession: GSM5258424 ID: 305258424 5875. ATAC-seq from K562 (ENCLB367HZK) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM ARS-853 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172596 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660739 Sample Accession: GSM5258417 ID: 305258417 5876. ATAC-seq from K562 (ENCLB858ALW) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM ARS-853 for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172596 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660738 Sample Accession: GSM5258416 ID: 305258416 5877. ATAC-seq from K562 (ENCLB740PQC) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172589 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660731 Sample Accession: GSM5258409 ID: 305258409 5878. ATAC-seq from K562 (ENCLB063KRP) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172589 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660730 Sample Accession: GSM5258408 ID: 305258408 5879. ATAC-seq from K562 (ENCLB561EMU) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172587 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660728 Sample Accession: GSM5258406 ID: 305258406 5880. ATAC-seq from K562 (ENCLB011ONQ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM Crizotinib for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172587 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660727 Sample Accession: GSM5258405 ID: 305258405 5881. ATAC-seq from K562 (ENCLB961SAP) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172586 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660726 Sample Accession: GSM5258404 ID: 305258404 5882. ATAC-seq from K562 (ENCLB616QWM) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 48 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172586 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660725 Sample Accession: GSM5258403 ID: 305258403 5883. ATAC-seq from K562 (ENCLB411YFT) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172567 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660702 Sample Accession: GSM5258366 ID: 305258366 5884. ATAC-seq from K562 (ENCLB475MGB) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 0.5 uM MB-3 for 12 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172567 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660701 Sample Accession: GSM5258365 ID: 305258365 5885. ATAC-seq from K562 (ENCLB294ITY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172551 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660680 Sample Accession: GSM5258344 ID: 305258344 5886. ATAC-seq from K562 (ENCLB657YGS) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM AR-42 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172551 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660679 Sample Accession: GSM5258343 ID: 305258343 5887. ATAC-seq from K562 (ENCLB880QJI) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM SGC-CBP30 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172549 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258341/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660677 Sample Accession: GSM5258341 ID: 305258341 5888. ATAC-seq from K562 (ENCLB772BNZ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 1 uM SGC-CBP30 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172549 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660676 Sample Accession: GSM5258340 ID: 305258340 5889. ATAC-seq from K562 (ENCLB123PAM) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172533 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660658 Sample Accession: GSM5258301 ID: 305258301 5890. ATAC-seq from K562 (ENCLB839WQR) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with DMSO for 4 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172533 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660657 Sample Accession: GSM5258300 ID: 305258300 5891. ATAC-seq from K562 (ENCLB467TFU) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 5 uM C646 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172532 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660656 Sample Accession: GSM5258299 ID: 305258299 5892. ATAC-seq from K562 (ENCLB593CJK) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 5 uM C646 for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172532 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660655 Sample Accession: GSM5258298 ID: 305258298 5893. ATAC-seq from K562 (ENCLB906OPV) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172524 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660649 Sample Accession: GSM5258286 ID: 305258286 5894. ATAC-seq from K562 (ENCLB352SDY) Organism: Homo sapiens Source name: Homo sapiens K562 cell line treated with 10 nM Chaetocin for 24 hours, preserved by flash-freezing Platform: GPL24676 Series: GSE172524 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5258nnn/GSM5258285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10660648 Sample Accession: GSM5258285 ID: 305258285 5895. ATAC-seq_Fruiting stage replicate 3 Organism: Dictyostelium discoideum Source name: Fruiting stage cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658230 Sample Accession: GSM4650332 ID: 304650332 5896. ATAC-seq_Fruiting stage replicate 2 Organism: Dictyostelium discoideum Source name: Fruiting stage cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650331/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658229 Sample Accession: GSM4650331 ID: 304650331 5897. ATAC-seq_Fruiting stage replicate 1 Organism: Dictyostelium discoideum Source name: Fruiting stage cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658228 Sample Accession: GSM4650330 ID: 304650330 5898. ATAC-seq_Mound stage replicate 4 Organism: Dictyostelium discoideum Source name: Mound cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658227 Sample Accession: GSM4650329 ID: 304650329 5899. ATAC-seq_Mound stage replicate 3 Organism: Dictyostelium discoideum Source name: Mound cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658226 Sample Accession: GSM4650328 ID: 304650328 5900. ATAC-seq_Mound stage replicate 2 Organism: Dictyostelium discoideum Source name: Mound cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658225 Sample Accession: GSM4650327 ID: 304650327 5901. ATAC-seq_Mound stage replicate 1 Organism: Dictyostelium discoideum Source name: Mound cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658224 Sample Accession: GSM4650326 ID: 304650326 5902. ATAC-seq_Streaming stage replicate 3 Organism: Dictyostelium discoideum Source name: Streaming cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650325/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658223 Sample Accession: GSM4650325 ID: 304650325 5903. ATAC-seq_Streaming stage replicate 2 Organism: Dictyostelium discoideum Source name: Streaming cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650324/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658222 Sample Accession: GSM4650324 ID: 304650324 5904. ATAC-seq_Streaming stage replicate 1 Organism: Dictyostelium discoideum Source name: Streaming cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650323/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658221 Sample Accession: GSM4650323 ID: 304650323 5905. ATAC-seq_Vegetative stage replicate 3 Organism: Dictyostelium discoideum Source name: Vegetative cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658220 Sample Accession: GSM4650322 ID: 304650322 5906. ATAC-seq_Vegetative stage replicate 2 Organism: Dictyostelium discoideum Source name: Vegetative cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658219 Sample Accession: GSM4650321 ID: 304650321 5907. ATAC-seq_Vegetative stage replicate 1 Organism: Dictyostelium discoideum Source name: Vegetative cell nuclei Platform: GPL26000 Series: GSE137604 GSE153733 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4650nnn/GSM4650320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8658218 Sample Accession: GSM4650320 ID: 304650320 5908. ATACseq_ELOFKOMock_Rep2_TagDir Organism: Homo sapiens Source name: RPE1-iCas9 ELOF1-KO Platform: GPL20795 Series: GSE149760 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8243103 Sample Accession: GSM4511911 ID: 304511911 5909. ATACseq_ELOFKOMock_Rep1_TagDir Organism: Homo sapiens Source name: RPE1-iCas9 ELOF1-KO Platform: GPL20795 Series: GSE149760 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8243102 Sample Accession: GSM4511910 ID: 304511910 5910. ATACseq_WTMock_Rep2_TagDir Organism: Homo sapiens Source name: RPE1-iCas9 WT Platform: GPL20795 Series: GSE149760 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8243101 Sample Accession: GSM4511909 ID: 304511909 5911. ATACseq_WTMock_Rep1_TagDir Organism: Homo sapiens Source name: RPE1-iCas9 WT Platform: GPL20795 Series: GSE149760 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8243100 Sample Accession: GSM4511908 ID: 304511908 5912. ATAC TET2KO_D3 2 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549668 Sample Accession: GSM4616577 ID: 304616577 5913. ATAC TET2KO_D3 1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549667 Sample Accession: GSM4616576 ID: 304616576 5914. ATAC TET2KO_D0 2 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549666 Sample Accession: GSM4616575 ID: 304616575 5915. ATAC TET2KO_D0 1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549665 Sample Accession: GSM4616574 ID: 304616574 5916. ATAC WT_D3 2 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549664 Sample Accession: GSM4616573 ID: 304616573 5917. ATAC WT_D3 1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549663 Sample Accession: GSM4616572 ID: 304616572 5918. ATAC WT_D0 2 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549662 Sample Accession: GSM4616571 ID: 304616571 5919. ATAC WT_D0 1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549661 Sample Accession: GSM4616570 ID: 304616570 5920. RNA TET2KO_D3 2 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549660 Sample Accession: GSM4616569 ID: 304616569 5921. RNA TET2KO_D3 1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549659 Sample Accession: GSM4616568 ID: 304616568 5922. RNA TET2KO_D0 2 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549658 Sample Accession: GSM4616567 ID: 304616567 5923. RNA TET2KO_D0 1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549657 Sample Accession: GSM4616566 ID: 304616566 5924. RNA WT_D3 2 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549656 Sample Accession: GSM4616565 ID: 304616565 5925. RNA WT_D3 1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549655 Sample Accession: GSM4616564 ID: 304616564 5926. RNA WT_D0 2 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549654 Sample Accession: GSM4616563 ID: 304616563 5927. RNA WT_D0 1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549653 Sample Accession: GSM4616562 ID: 304616562 5928. scRNA TET2KO_PDL1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549652 Sample Accession: GSM4616561 ID: 304616561 5929. scRNA TET2KO_CTL Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549651 Sample Accession: GSM4616560 ID: 304616560 5930. scRNA WT_PDL1 Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549650 Sample Accession: GSM4616559 ID: 304616559 5931. scRNA WT_CTL Organism: Mus musculus Source name: CD8+ TILs Platform: GPL19057 Series: GSE152496 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4616nnn/GSM4616558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8549649 Sample Accession: GSM4616558 ID: 304616558 5932. ATAC-seq_Embryo rep2 Organism: Mus musculus Source name: Embryonic esophagus E13 Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4957nnn/GSM4957943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9635507 Sample Accession: GSM4957943 ID: 304957943 5933. ATAC-seq_Embryo rep1 Organism: Mus musculus Source name: Embryonic esophagus E13 Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4957nnn/GSM4957942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9635506 Sample Accession: GSM4957942 ID: 304957942 5934. ATAC-seq_K5SmoM2Sox9cKO rep3 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4957nnn/GSM4957941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9635505 Sample Accession: GSM4957941 ID: 304957941 5935. ATAC-seq_K5SmoM2Sox9cKO rep2 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4957nnn/GSM4957940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9635504 Sample Accession: GSM4957940 ID: 304957940 5936. ATAC-seq_K5SmoM2Sox9cKO rep1 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4957nnn/GSM4957939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9635503 Sample Accession: GSM4957939 ID: 304957939 5937. ATAC-seq_K5SmoM2 rep3 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4484nnn/GSM4484782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8133400 Sample Accession: GSM4484782 ID: 304484782 5938. ATAC-seq_K5SmoM2 rep2 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4484nnn/GSM4484781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8133399 Sample Accession: GSM4484781 ID: 304484781 5939. ATAC-seq_K5SmoM2 rep1 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4484nnn/GSM4484780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8133398 Sample Accession: GSM4484780 ID: 304484780 5940. ATAC-seq_WT rep3 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4484nnn/GSM4484779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8133397 Sample Accession: GSM4484779 ID: 304484779 5941. ATAC-seq_WT rep2 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4484nnn/GSM4484778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8133396 Sample Accession: GSM4484778 ID: 304484778 5942. ATAC-seq_WT rep1 Organism: Mus musculus Source name: Esophagus Platform: GPL24247 Series: GSE148872 GSE148876 FTP download: GEO (BIGWIG, TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4484nnn/GSM4484777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8133395 Sample Accession: GSM4484777 ID: 304484777 5943. ATAC-Seq Ad Cor/Conj 283P Organism: Homo sapiens Source name: Cornea/Conjunctiva Platform: GPL24676 Series: GSE155683 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8884983 Sample Accession: GSM4710481 ID: 304710481 5944. ATAC-Seq Ad Cor/Conj 719I Organism: Homo sapiens Source name: Cornea/Conjunctiva Platform: GPL24676 Series: GSE155683 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8884982 Sample Accession: GSM4710480 ID: 304710480 5945. ATAC-Seq Ad Cor/Conj 246Z Organism: Homo sapiens Source name: Cornea/Conjunctiva Platform: GPL24676 Series: GSE155683 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8884981 Sample Accession: GSM4710479 ID: 304710479 5946. ATAC-Seq Ad Cor/Conj 257T Organism: Homo sapiens Source name: Cornea/Conjunctiva Platform: GPL24676 Series: GSE155683 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8884980 Sample Accession: GSM4710478 ID: 304710478 5947. AKI6_CD8_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713545 Sample Accession: GSM3731724 ID: 303731724 5948. AKI6_CD8_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713544 Sample Accession: GSM3731723 ID: 303731723 5949. AKI6_CD4_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713543 Sample Accession: GSM3731722 ID: 303731722 5950. AKI6_CD4_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713542 Sample Accession: GSM3731721 ID: 303731721 5951. AKI5_CD8_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713541 Sample Accession: GSM3731720 ID: 303731720 5952. AKI5_CD8_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713540 Sample Accession: GSM3731719 ID: 303731719 5953. AKI5_CD4_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713539 Sample Accession: GSM3731718 ID: 303731718 5954. AKI5_CD4_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713538 Sample Accession: GSM3731717 ID: 303731717 5955. AKI4_CD8_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713537 Sample Accession: GSM3731716 ID: 303731716 5956. AKI4_CD8_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713536 Sample Accession: GSM3731715 ID: 303731715 5957. AKI4_CD4_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713535 Sample Accession: GSM3731714 ID: 303731714 5958. AKI4_CD4_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713534 Sample Accession: GSM3731713 ID: 303731713 5959. AKI3_CD8_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713533 Sample Accession: GSM3731712 ID: 303731712 5960. AKI3_CD8_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713532 Sample Accession: GSM3731711 ID: 303731711 5961. AKI3_CD4_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713531 Sample Accession: GSM3731710 ID: 303731710 5962. AKI3_CD4_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713530 Sample Accession: GSM3731709 ID: 303731709 5963. AKI2_CD8_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713529 Sample Accession: GSM3731708 ID: 303731708 5964. AKI2_CD8_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713528 Sample Accession: GSM3731707 ID: 303731707 5965. AKI2_CD4_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713527 Sample Accession: GSM3731706 ID: 303731706 5966. AKI2_CD4_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713526 Sample Accession: GSM3731705 ID: 303731705 5967. AKI1_CD8_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713525 Sample Accession: GSM3731704 ID: 303731704 5968. AKI1_CD8_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713524 Sample Accession: GSM3731703 ID: 303731703 5969. AKI1_CD4_Day-2_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713523 Sample Accession: GSM3731702 ID: 303731702 5970. AKI1_CD4_Day-2_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713522 Sample Accession: GSM3731701 ID: 303731701 5971. AKI6_CD8_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713521 Sample Accession: GSM3731700 ID: 303731700 5972. AKI6_CD8_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713520 Sample Accession: GSM3731699 ID: 303731699 5973. AKI6_CD4_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713519 Sample Accession: GSM3731698 ID: 303731698 5974. AKI6_CD4_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713518 Sample Accession: GSM3731697 ID: 303731697 5975. AKI5_CD8_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713517 Sample Accession: GSM3731696 ID: 303731696 5976. AKI5_CD8_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713516 Sample Accession: GSM3731695 ID: 303731695 5977. AKI5_CD4_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713515 Sample Accession: GSM3731694 ID: 303731694 5978. AKI5_CD4_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713514 Sample Accession: GSM3731693 ID: 303731693 5979. AKI4_CD8_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713513 Sample Accession: GSM3731692 ID: 303731692 5980. AKI4_CD8_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713512 Sample Accession: GSM3731691 ID: 303731691 5981. AKI4_CD4_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713511 Sample Accession: GSM3731690 ID: 303731690 5982. AKI4_CD4_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713510 Sample Accession: GSM3731689 ID: 303731689 5983. AKI3_CD8_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713509 Sample Accession: GSM3731688 ID: 303731688 5984. AKI3_CD8_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713508 Sample Accession: GSM3731687 ID: 303731687 5985. AKI3_CD4_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713507 Sample Accession: GSM3731686 ID: 303731686 5986. AKI3_CD4_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713506 Sample Accession: GSM3731685 ID: 303731685 5987. AKI2_CD8_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713505 Sample Accession: GSM3731684 ID: 303731684 5988. AKI2_CD8_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713504 Sample Accession: GSM3731683 ID: 303731683 5989. AKI2_CD4_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713503 Sample Accession: GSM3731682 ID: 303731682 5990. AKI2_CD4_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713502 Sample Accession: GSM3731681 ID: 303731681 5991. AKI1_CD8_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713501 Sample Accession: GSM3731680 ID: 303731680 5992. AKI1_CD8_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713500 Sample Accession: GSM3731679 ID: 303731679 5993. AKI1_CD4_Day0_Rep2 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713499 Sample Accession: GSM3731678 ID: 303731678 5994. AKI1_CD4_Day0_Rep1 Organism: Homo sapiens Source name: whole blood Platform: GPL20301 Series: GSE130089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713498 Sample Accession: GSM3731677 ID: 303731677 5995. HG3, Low survivorship - timepoint 3 (ATAC-seq) Organism: Homo sapiens Source name: HG3 cell line Platform: GPL18573 Series: GSE151430 GSE151431 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4577nnn/GSM4577999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8423465 Sample Accession: GSM4577999 ID: 304577999 5996. HG3, Low survivorship - timepoint 2 (ATAC-seq) Organism: Homo sapiens Source name: HG3 cell line Platform: GPL18573 Series: GSE151430 GSE151431 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4577nnn/GSM4577998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8423464 Sample Accession: GSM4577998 ID: 304577998 5997. HG3, Low survivorship - timepoint 1 (ATAC-seq) Organism: Homo sapiens Source name: HG3 cell line Platform: GPL18573 Series: GSE151430 GSE151431 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4577nnn/GSM4577997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8423463 Sample Accession: GSM4577997 ID: 304577997 5998. HG3, High survivorship - timepoint 3 (ATAC-seq) Organism: Homo sapiens Source name: HG3 cell line Platform: GPL18573 Series: GSE151430 GSE151431 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4577nnn/GSM4577996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8423462 Sample Accession: GSM4577996 ID: 304577996 5999. HG3, High survivorship - timepoint 2 (ATAC-seq) Organism: Homo sapiens Source name: HG3 cell line Platform: GPL18573 Series: GSE151430 GSE151431 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4577nnn/GSM4577995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8423461 Sample Accession: GSM4577995 ID: 304577995 6000. HG3, High survivorship - timepoint 1 (ATAC-seq) Organism: Homo sapiens Source name: HG3 cell line Platform: GPL18573 Series: GSE151430 GSE151431 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4577nnn/GSM4577994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8423460 Sample Accession: GSM4577994 ID: 304577994 6001. ATAC_S8 Organism: Homo sapiens Source name: xenograft bone metastasis Platform: GPL20301 Series: GSE160582 GSE160583 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4875nnn/GSM4875636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9413552 Sample Accession: GSM4875636 ID: 304875636 6002. ATAC_S7 Organism: Homo sapiens Source name: Parental Platform: GPL20301 Series: GSE160582 GSE160583 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4875nnn/GSM4875635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9413551 Sample Accession: GSM4875635 ID: 304875635 6003. ATAC_S6 Organism: Homo sapiens Source name: xenograft bone metastasis Platform: GPL20301 Series: GSE160582 GSE160583 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4875nnn/GSM4875634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9413550 Sample Accession: GSM4875634 ID: 304875634 6004. ATAC_S5 Organism: Homo sapiens Source name: Parental Platform: GPL20301 Series: GSE160582 GSE160583 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4875nnn/GSM4875633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9413549 Sample Accession: GSM4875633 ID: 304875633 6005. ATAC_S4 Organism: Homo sapiens Source name: xenograft bone metastasis Platform: GPL20301 Series: GSE160582 GSE160583 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4875nnn/GSM4875632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9413548 Sample Accession: GSM4875632 ID: 304875632 6006. ATAC_S3 Organism: Homo sapiens Source name: Parental Platform: GPL20301 Series: GSE160582 GSE160583 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4875nnn/GSM4875631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9413547 Sample Accession: GSM4875631 ID: 304875631 6007. ATAC_S2 Organism: Homo sapiens Source name: xenograft bone metastasis Platform: GPL20301 Series: GSE160582 GSE160583 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4875nnn/GSM4875630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9413546 Sample Accession: GSM4875630 ID: 304875630 6008. ATAC_S1 Organism: Homo sapiens Source name: Parental Platform: GPL20301 Series: GSE160582 GSE160583 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4875nnn/GSM4875629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9413545 Sample Accession: GSM4875629 ID: 304875629 6009. ATACseq_Chd8cKO_2 Organism: Mus musculus Source name: mouse E14.5 NPCs Platform: GPL21103 Series: GSE148608 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4475nnn/GSM4475083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111420 Sample Accession: GSM4475083 ID: 304475083 6010. ATACseq_Chd8cKO_1 Organism: Mus musculus Source name: mouse E14.6 NPCs Platform: GPL21103 Series: GSE148608 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4475nnn/GSM4475082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111419 Sample Accession: GSM4475082 ID: 304475082 6011. ATACseq_Control_2 Organism: Mus musculus Source name: mouse E14.5 NPCs Platform: GPL21103 Series: GSE148608 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4475nnn/GSM4475081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111418 Sample Accession: GSM4475081 ID: 304475081 6012. ATACseq_Control_1 Organism: Mus musculus Source name: mouse E14.5 NPCs Platform: GPL21103 Series: GSE148608 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4475nnn/GSM4475080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111417 Sample Accession: GSM4475080 ID: 304475080 6013. ATAC-seq negative control Organism: Caenorhabditis elegans Source name: whole nematodes Platform: GPL19757 Series: GSE157017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9025734 Sample Accession: GSM4750918 ID: 304750918 6014. TAC JQ1 withdrawn scATAC rep 2 Organism: Mus musculus Source name: Heart tissue (non-cardiomyocyte cells) Platform: GPL24247 Series: GSE155882 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4715nnn/GSM4715044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8909979 Sample Accession: GSM4715044 ID: 304715044 6015. TAC JQ1 withdrawn scATAC rep 1 Organism: Mus musculus Source name: Heart tissue (non-cardiomyocyte cells) Platform: GPL24247 Series: GSE155882 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4715nnn/GSM4715043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8909978 Sample Accession: GSM4715043 ID: 304715043 6016. TAC JQ1 scATAC rep 2 Organism: Mus musculus Source name: Heart tissue (non-cardiomyocyte cells) Platform: GPL24247 Series: GSE155882 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4715nnn/GSM4715042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8909977 Sample Accession: GSM4715042 ID: 304715042 6017. TAC JQ1 scATAC rep 1 Organism: Mus musculus Source name: Heart tissue (non-cardiomyocyte cells) Platform: GPL24247 Series: GSE155882 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4715nnn/GSM4715041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8909976 Sample Accession: GSM4715041 ID: 304715041 6018. TAC scATAC rep 2 Organism: Mus musculus Source name: Heart tissue (non-cardiomyocyte cells) Platform: GPL24247 Series: GSE155882 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4715nnn/GSM4715040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8909975 Sample Accession: GSM4715040 ID: 304715040 6019. TAC scATAC rep 1 Organism: Mus musculus Source name: Heart tissue (non-cardiomyocyte cells) Platform: GPL24247 Series: GSE155882 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4715nnn/GSM4715039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8909974 Sample Accession: GSM4715039 ID: 304715039 6020. Sham scATAC rep 2 Organism: Mus musculus Source name: Heart tissue (non-cardiomyocyte cells) Platform: GPL24247 Series: GSE155882 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4715nnn/GSM4715038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8909973 Sample Accession: GSM4715038 ID: 304715038 6021. Sham scATAC rep 1 Organism: Mus musculus Source name: Heart tissue (non-cardiomyocyte cells) Platform: GPL24247 Series: GSE155882 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4715nnn/GSM4715037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8909972 Sample Accession: GSM4715037 ID: 304715037 6022. 5HT_3 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528424 Sample Accession: GSM5229060 ID: 305229060 6023. NAdr_3 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528423 Sample Accession: GSM5229059 ID: 305229059 6024. ACh_3 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528422 Sample Accession: GSM5229058 ID: 305229058 6025. GABA_3 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528421 Sample Accession: GSM5229057 ID: 305229057 6026. Glu_3 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528420 Sample Accession: GSM5229056 ID: 305229056 6027. control_3 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528419 Sample Accession: GSM5229055 ID: 305229055 6028. 5HT_2 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528418 Sample Accession: GSM5229054 ID: 305229054 6029. NAdr_2 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528417 Sample Accession: GSM5229053 ID: 305229053 6030. ACh_2 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528416 Sample Accession: GSM5229052 ID: 305229052 6031. GABA_2 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528415 Sample Accession: GSM5229051 ID: 305229051 6032. Glu_2 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528414 Sample Accession: GSM5229050 ID: 305229050 6033. control_2 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229049/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528413 Sample Accession: GSM5229049 ID: 305229049 6034. 5HT_1 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528412 Sample Accession: GSM5229048 ID: 305229048 6035. NAdr_1 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528411 Sample Accession: GSM5229047 ID: 305229047 6036. ACh_1 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528410 Sample Accession: GSM5229046 ID: 305229046 6037. GABA_1 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528409 Sample Accession: GSM5229045 ID: 305229045 6038. Glu_1 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528408 Sample Accession: GSM5229044 ID: 305229044 6039. control_1 [ATAC-seq] Organism: Mus musculus Source name: mES_astrocyte Platform: GPL19057 Series: GSE171594 GSE171595 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5229nnn/GSM5229043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10528407 Sample Accession: GSM5229043 ID: 305229043 6040. MuSC_d21_Aged_bulkATACseq_Rep2 Organism: Mus musculus Source name: Muscle stem cells Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5225nnn/GSM5225947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10511466 Sample Accession: GSM5225947 ID: 305225947 6041. MuSC_d21_Aged_bulkATACseq_Rep1 Organism: Mus musculus Source name: Muscle stem cells Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5225nnn/GSM5225946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10511465 Sample Accession: GSM5225946 ID: 305225946 6042. MuSC_d21_Young_bulkATACseq_Rep2 Organism: Mus musculus Source name: Muscle stem cells Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5225nnn/GSM5225945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10511464 Sample Accession: GSM5225945 ID: 305225945 6043. MuSC_d21_Young_bulkATACseq_Rep1 Organism: Mus musculus Source name: Muscle stem cells Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5225nnn/GSM5225944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10511463 Sample Accession: GSM5225944 ID: 305225944 6044. MuT1_S2 Organism: Mus musculus Source name: molar Platform: GPL24247 Series: GSE166354 GSE166360 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10048743 Sample Accession: GSM5068992 ID: 305068992 6045. WT2_S3 Organism: Mus musculus Source name: molar Platform: GPL24247 Series: GSE166354 GSE166360 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10048742 Sample Accession: GSM5068991 ID: 305068991 6046. WT1_S1 Organism: Mus musculus Source name: molar Platform: GPL24247 Series: GSE166354 GSE166360 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10048741 Sample Accession: GSM5068990 ID: 305068990 6047. ATAC_WntMO_Treat_r2 Organism: Gallus gallus Source name: Neural folds Platform: GPL19787 Series: GSE150006 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5012nnn/GSM5012219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9813555 Sample Accession: GSM5012219 ID: 305012219 6048. ATAC_WntMO_Treat_r1 Organism: Gallus gallus Source name: Neural folds Platform: GPL19787 Series: GSE150006 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5012nnn/GSM5012218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9813554 Sample Accession: GSM5012218 ID: 305012218 6049. ATAC_WntMO_Ctrl_r2 Organism: Gallus gallus Source name: Neural folds Platform: GPL19787 Series: GSE150006 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5012nnn/GSM5012217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9813553 Sample Accession: GSM5012217 ID: 305012217 6050. ATAC_WntMO_Ctrl_r1 Organism: Gallus gallus Source name: Neural folds Platform: GPL19787 Series: GSE150006 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5012nnn/GSM5012216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9813552 Sample Accession: GSM5012216 ID: 305012216 6051. ATAC-seq_dTAG_rep2 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL19057 Series: GSE143737 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4831nnn/GSM4831510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9296007 Sample Accession: GSM4831510 ID: 304831510 6052. ATAC-seq_dTAG_rep1 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL19057 Series: GSE143737 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4831nnn/GSM4831509/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9296006 Sample Accession: GSM4831509 ID: 304831509 6053. ATAC-seq_Control_rep2 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL19057 Series: GSE143737 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4831nnn/GSM4831508/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9296005 Sample Accession: GSM4831508 ID: 304831508 6054. ATAC-seq_Control_rep1 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL19057 Series: GSE143737 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4831nnn/GSM4831507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9296004 Sample Accession: GSM4831507 ID: 304831507 6055. ATAC_ID2_2 Organism: Mus musculus Source name: P14 CD8 T cells Platform: GPL19057 Series: GSE142342 GSE142344 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4225nnn/GSM4225709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416734 Sample Accession: GSM4225709 ID: 304225709 6056. ATAC_ID2_1 Organism: Mus musculus Source name: P14 CD8 T cells Platform: GPL19057 Series: GSE142342 GSE142344 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4225nnn/GSM4225708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416733 Sample Accession: GSM4225708 ID: 304225708 6057. ATAC_E47_2 Organism: Mus musculus Source name: P14 CD8 T cells Platform: GPL19057 Series: GSE142342 GSE142344 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4225nnn/GSM4225707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416732 Sample Accession: GSM4225707 ID: 304225707 6058. ATAC_E47_1 Organism: Mus musculus Source name: P14 CD8 T cells Platform: GPL19057 Series: GSE142342 GSE142344 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4225nnn/GSM4225706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416731 Sample Accession: GSM4225706 ID: 304225706 6059. ATAC_MIG_2 Organism: Mus musculus Source name: P14 CD8 T cells Platform: GPL19057 Series: GSE142342 GSE142344 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4225nnn/GSM4225705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416730 Sample Accession: GSM4225705 ID: 304225705 6060. ATAC_MIG_1 Organism: Mus musculus Source name: P14 CD8 T cells Platform: GPL19057 Series: GSE142342 GSE142344 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4225nnn/GSM4225704/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416729 Sample Accession: GSM4225704 ID: 304225704 6061. ATAC-seq – ESC rep 4 Organism: Mus musculus Source name: embryonic stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071160 Sample Accession: GSM4766186 ID: 304766186 6062. ATAC-seq – ESC rep 3 Organism: Mus musculus Source name: embryonic stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071159 Sample Accession: GSM4766185 ID: 304766185 6063. ATAC-seq – ESC rep 2 Organism: Mus musculus Source name: embryonic stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071158 Sample Accession: GSM4766184 ID: 304766184 6064. ATAC-seq – ESC rep 1 Organism: Mus musculus Source name: embryonic stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071157 Sample Accession: GSM4766183 ID: 304766183 6065. ATAC-seq – iPSC rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071156 Sample Accession: GSM4766182 ID: 304766182 6066. ATAC-seq – iPSC rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071155 Sample Accession: GSM4766181 ID: 304766181 6067. ATAC-seq – iPSC rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071154 Sample Accession: GSM4766180 ID: 304766180 6068. ATAC-seq – iPSC rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071153 Sample Accession: GSM4766179 ID: 304766179 6069. ATAC-seq – D10 X-GFP+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071152 Sample Accession: GSM4766178 ID: 304766178 6070. ATAC-seq – D10 X-GFP+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071151 Sample Accession: GSM4766177 ID: 304766177 6071. ATAC-seq – D10 X-GFP+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071150 Sample Accession: GSM4766176 ID: 304766176 6072. ATAC-seq – D10 X-GFP+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071149 Sample Accession: GSM4766175 ID: 304766175 6073. ATAC-seq – D9 X-GFP+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071148 Sample Accession: GSM4766174 ID: 304766174 6074. ATAC-seq – D9 X-GFP+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071147 Sample Accession: GSM4766173 ID: 304766173 6075. ATAC-seq – D9 X-GFP+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071146 Sample Accession: GSM4766172 ID: 304766172 6076. ATAC-seq – D9 X-GFP+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071145 Sample Accession: GSM4766171 ID: 304766171 6077. ATAC-seq – D8 X-GFP+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071144 Sample Accession: GSM4766170 ID: 304766170 6078. ATAC-seq – D8 X-GFP+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071143 Sample Accession: GSM4766169 ID: 304766169 6079. ATAC-seq – D8 X-GFP+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071142 Sample Accession: GSM4766168 ID: 304766168 6080. ATAC-seq – D8 X-GFP+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071141 Sample Accession: GSM4766167 ID: 304766167 6081. ATAC-seq – D7 X-GFP+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071140 Sample Accession: GSM4766166 ID: 304766166 6082. ATAC-seq – D7 X-GFP+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071139 Sample Accession: GSM4766165 ID: 304766165 6083. ATAC-seq – D7 X-GFP+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071138 Sample Accession: GSM4766164 ID: 304766164 6084. ATAC-seq – D7 X-GFP+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071137 Sample Accession: GSM4766163 ID: 304766163 6085. ATAC-seq – D6 X-GFP+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071136 Sample Accession: GSM4766162 ID: 304766162 6086. ATAC-seq – D6 X-GFP+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071135 Sample Accession: GSM4766161 ID: 304766161 6087. ATAC-seq – D6 X-GFP+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071134 Sample Accession: GSM4766160 ID: 304766160 6088. ATAC-seq – D6 X-GFP+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071133 Sample Accession: GSM4766159 ID: 304766159 6089. ATAC-seq – D6 X-GFP~ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071132 Sample Accession: GSM4766158 ID: 304766158 6090. ATAC-seq – D6 X-GFP~ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071131 Sample Accession: GSM4766157 ID: 304766157 6091. ATAC-seq – D6 X-GFP~ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071130 Sample Accession: GSM4766156 ID: 304766156 6092. ATAC-seq – D6 X-GFP~ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071129 Sample Accession: GSM4766155 ID: 304766155 6093. ATAC-seq – D6 P-RFP+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071128 Sample Accession: GSM4766154 ID: 304766154 6094. ATAC-seq – D6 P-RFP+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071127 Sample Accession: GSM4766153 ID: 304766153 6095. ATAC-seq – D6 P-RFP+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071126 Sample Accession: GSM4766152 ID: 304766152 6096. ATAC-seq – D6 P-RFP+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071125 Sample Accession: GSM4766151 ID: 304766151 6097. ATAC-seq – D5 P-RFP+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071124 Sample Accession: GSM4766150 ID: 304766150 6098. ATAC-seq – D5 P-RFP+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071123 Sample Accession: GSM4766149 ID: 304766149 6099. ATAC-seq – D5 P-RFP+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071122 Sample Accession: GSM4766148 ID: 304766148 6100. ATAC-seq – D5 P-RFP+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071121 Sample Accession: GSM4766147 ID: 304766147 6101. ATAC-seq – D4 P-RFP+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071120 Sample Accession: GSM4766146 ID: 304766146 6102. ATAC-seq – D4 P-RFP+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071119 Sample Accession: GSM4766145 ID: 304766145 6103. ATAC-seq – D4 P-RFP+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071118 Sample Accession: GSM4766144 ID: 304766144 6104. ATAC-seq – D4 P-RFP+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071117 Sample Accession: GSM4766143 ID: 304766143 6105. ATAC-seq – D4 SSEA1+ rep 4 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071116 Sample Accession: GSM4766142 ID: 304766142 6106. ATAC-seq – D4 SSEA1+ rep 3 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071115 Sample Accession: GSM4766141 ID: 304766141 6107. ATAC-seq – D4 SSEA1+ rep 2 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071114 Sample Accession: GSM4766140 ID: 304766140 6108. ATAC-seq – D4 SSEA1+ rep 1 Organism: Mus musculus Source name: induced pluripotent stem cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071113 Sample Accession: GSM4766139 ID: 304766139 6109. ATAC-seq – NPC rep 4 Organism: Mus musculus Source name: neural progenitor cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071112 Sample Accession: GSM4766138 ID: 304766138 6110. ATAC-seq – NPC rep 3 Organism: Mus musculus Source name: neural progenitor cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071111 Sample Accession: GSM4766137 ID: 304766137 6111. ATAC-seq – NPC rep 2 Organism: Mus musculus Source name: neural progenitor cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071110 Sample Accession: GSM4766136 ID: 304766136 6112. ATAC-seq – NPC rep 1 Organism: Mus musculus Source name: neural progenitor cell Platform: GPL17021 Series: GSE157448 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9071109 Sample Accession: GSM4766135 ID: 304766135 6113. normoxia_1hr_U2OS_biorep4_Input Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499701 Sample Accession: GSM5222774 ID: 305222774 6114. normoxia_1hr_U2OS_biorep4_ChIP3 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499700 Sample Accession: GSM5222773 ID: 305222773 6115. normoxia_1hr_U2OS_biorep4_ChIP2 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499699 Sample Accession: GSM5222772 ID: 305222772 6116. normoxia_1hr_U2OS_biorep4_ChIP1 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499698 Sample Accession: GSM5222771 ID: 305222771 6117. normoxia_1hr_U2OS_biorep3_Input Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499697 Sample Accession: GSM5222770 ID: 305222770 6118. normoxia_1hr_U2OS_biorep3_ChIP3 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499696 Sample Accession: GSM5222769 ID: 305222769 6119. normoxia_1hr_U2OS_biorep3_ChIP2 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499695 Sample Accession: GSM5222768 ID: 305222768 6120. normoxia_1hr_U2OS_biorep3_ChIP1 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499694 Sample Accession: GSM5222767 ID: 305222767 6121. normoxia_1hr_U2OS_biorep1_Input Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499693 Sample Accession: GSM5222766 ID: 305222766 6122. normoxia_1hr_U2OS_biorep1_ChIP3 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499692 Sample Accession: GSM5222765 ID: 305222765 6123. normoxia_1hr_U2OS_biorep1_ChIP2 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499691 Sample Accession: GSM5222764 ID: 305222764 6124. normoxia_1hr_U2OS_biorep1_ChIP1 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499690 Sample Accession: GSM5222763 ID: 305222763 6125. hypoxia_1hr_U2OS_biorep4_Input Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499689 Sample Accession: GSM5222762 ID: 305222762 6126. hypoxia_1hr_U2OS_biorep4_ChIP3 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499688 Sample Accession: GSM5222761 ID: 305222761 6127. hypoxia_1hr_U2OS_biorep4_ChIP2 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499687 Sample Accession: GSM5222760 ID: 305222760 6128. hypoxia_1hr_U2OS_biorep4_ChIP1 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499686 Sample Accession: GSM5222759 ID: 305222759 6129. hypoxia_1hr_U2OS_biorep3_Input Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499685 Sample Accession: GSM5222758 ID: 305222758 6130. hypoxia_1hr_U2OS_biorep3_ChIP3 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499684 Sample Accession: GSM5222757 ID: 305222757 6131. hypoxia_1hr_U2OS_biorep3_ChIP2 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499683 Sample Accession: GSM5222756 ID: 305222756 6132. hypoxia_1hr_U2OS_biorep3_ChIP1 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499682 Sample Accession: GSM5222755 ID: 305222755 6133. hypoxia_1hr_U2OS_biorep1_Input Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499681 Sample Accession: GSM5222754 ID: 305222754 6134. hypoxia_1hr_U2OS_biorep1_ChIP3 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222753/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499680 Sample Accession: GSM5222753 ID: 305222753 6135. hypoxia_1hr_U2OS_biorep1_ChIP2 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222752/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499679 Sample Accession: GSM5222752 ID: 305222752 6136. hypoxia_1hr_U2OS_biorep1_ChIP1 Organism: Homo sapiens Source name: cultured U2OS cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5222nnn/GSM5222751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10499678 Sample Accession: GSM5222751 ID: 305222751 6137. LF_1-1 Organism: Homo sapiens Source name: lung fibroblast cells Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626199/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574723 Sample Accession: GSM4626199 ID: 304626199 6138. ATII-3-1 Organism: Homo sapiens Source name: alveolar type II pneumocytes Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574722 Sample Accession: GSM4626198 ID: 304626198 6139. ATII-2-1 Organism: Homo sapiens Source name: alveolar type II pneumocytes Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574721 Sample Accession: GSM4626197 ID: 304626197 6140. ATII-1-1 Organism: Homo sapiens Source name: alveolar type II pneumocytes Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574720 Sample Accession: GSM4626196 ID: 304626196 6141. SAEC_2-2 Organism: Homo sapiens Source name: small airway epithelial cells Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574719 Sample Accession: GSM4626195 ID: 304626195 6142. SAEC_2-1 Organism: Homo sapiens Source name: small airway epithelial cells Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574718 Sample Accession: GSM4626194 ID: 304626194 6143. SAEC_1-2 Organism: Homo sapiens Source name: small airway epithelial cells Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574717 Sample Accession: GSM4626193 ID: 304626193 6144. SAEC_1-1 Organism: Homo sapiens Source name: small airway epithelial cells Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574716 Sample Accession: GSM4626192 ID: 304626192 6145. NHBE_1-2 Organism: Homo sapiens Source name: bronchial/tracheal epithelial cells Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574715 Sample Accession: GSM4626191 ID: 304626191 6146. NHBE_1-1 Organism: Homo sapiens Source name: bronchial/tracheal epithelial cells Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574714 Sample Accession: GSM4626190 ID: 304626190 6147. 16HBE_O1-2 Organism: Homo sapiens Source name: 16HBE14o- bronchial epithelial cell line Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574713 Sample Accession: GSM4626189 ID: 304626189 6148. 16HBE_O1-1 Organism: Homo sapiens Source name: 16HBE14o- bronchial epithelial cell line Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574712 Sample Accession: GSM4626188 ID: 304626188 6149. 16HBE_F1-2 Organism: Homo sapiens Source name: 16HBE14o- bronchial epithelial cell line Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574711 Sample Accession: GSM4626187 ID: 304626187 6150. 16HBE_F1-1 Organism: Homo sapiens Source name: 16HBE14o- bronchial epithelial cell line Platform: GPL18573 Series: GSE152779 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4626nnn/GSM4626186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8574710 Sample Accession: GSM4626186 ID: 304626186 6151. U937 cells, ΔNSPs_3 (ATAC-seq) Organism: Homo sapiens Source name: Monocytic cell line Platform: GPL18573 Series: GSE142660 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4237nnn/GSM4237396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7450577 Sample Accession: GSM4237396 ID: 304237396 6152. U937 cells, ΔNSPs_2 (ATAC-seq) Organism: Homo sapiens Source name: Monocytic cell line Platform: GPL18573 Series: GSE142660 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4237nnn/GSM4237395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7450576 Sample Accession: GSM4237395 ID: 304237395 6153. U937 cells, ΔNSPs_1 (ATAC-seq) Organism: Homo sapiens Source name: Monocytic cell line Platform: GPL18573 Series: GSE142660 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4237nnn/GSM4237394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7450575 Sample Accession: GSM4237394 ID: 304237394 6154. U937 cells, Control_3 (ATAC-seq) Organism: Homo sapiens Source name: Monocytic cell line Platform: GPL18573 Series: GSE142660 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4237nnn/GSM4237393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7450574 Sample Accession: GSM4237393 ID: 304237393 6155. U937 cells, Control_2 (ATAC-seq) Organism: Homo sapiens Source name: Monocytic cell line Platform: GPL18573 Series: GSE142660 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4237nnn/GSM4237392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7450573 Sample Accession: GSM4237392 ID: 304237392 6156. U937 cells, Control_1 (ATAC-seq) Organism: Homo sapiens Source name: Monocytic cell line Platform: GPL18573 Series: GSE142660 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4237nnn/GSM4237391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7450572 Sample Accession: GSM4237391 ID: 304237391 6157. 24HR_T3_ATAC_rep2 Organism: Homo sapiens Source name: normal thyroid epithelial cell line Nthy-ORI Platform: GPL18460 Series: GSE168953 GSE168954 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10346647 Sample Accession: GSM5172761 ID: 305172761 6158. 24HR_T3_ATAC_rep1 Organism: Homo sapiens Source name: normal thyroid epithelial cell line Nthy-ORI Platform: GPL18460 Series: GSE168953 GSE168954 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10346646 Sample Accession: GSM5172760 ID: 305172760 6159. 6HR_T3_ATAC_rep2 Organism: Homo sapiens Source name: normal thyroid epithelial cell line Nthy-ORI Platform: GPL18460 Series: GSE168953 GSE168954 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10346645 Sample Accession: GSM5172759 ID: 305172759 6160. 6HR_T3_ATAC_rep1 Organism: Homo sapiens Source name: normal thyroid epithelial cell line Nthy-ORI Platform: GPL18460 Series: GSE168953 GSE168954 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10346644 Sample Accession: GSM5172758 ID: 305172758 6161. vehicle_ATAC_rep2 Organism: Homo sapiens Source name: normal thyroid epithelial cell line Nthy-ORI Platform: GPL18460 Series: GSE168953 GSE168954 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10346643 Sample Accession: GSM5172757 ID: 305172757 6162. vehicle_ATAC_rep1 Organism: Homo sapiens Source name: normal thyroid epithelial cell line Nthy-ORI Platform: GPL18460 Series: GSE168953 GSE168954 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10346642 Sample Accession: GSM5172756 ID: 305172756 6163. ATAC-Seq WT2CpG2h Organism: Mus musculus Source name: bone marrow Platform: GPL19057 Series: GSE171075 GSE178412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5218nnn/GSM5218332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10468641 Sample Accession: GSM5218332 ID: 305218332 6164. ATAC-Seq WT1CpG2h Organism: Mus musculus Source name: bone marrow Platform: GPL19057 Series: GSE171075 GSE178412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5218nnn/GSM5218331/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10468640 Sample Accession: GSM5218331 ID: 305218331 6165. ATAC-Seq WT2 Organism: Mus musculus Source name: bone marrow Platform: GPL19057 Series: GSE171075 GSE178412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5218nnn/GSM5218330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10468639 Sample Accession: GSM5218330 ID: 305218330 6166. ATAC-Seq WT1 Organism: Mus musculus Source name: bone marrow Platform: GPL19057 Series: GSE171075 GSE178412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5218nnn/GSM5218329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10468638 Sample Accession: GSM5218329 ID: 305218329 6167. normoxia_1hr_Pol2_input_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600723 Sample Accession: GSM4948771 ID: 304948771 6168. normoxia_1hr_Pol2_input_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600722 Sample Accession: GSM4948770 ID: 304948770 6169. normoxia_1hr_Pol2_input_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600721 Sample Accession: GSM4948769 ID: 304948769 6170. normoxia_1hr_Pol2_input_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600720 Sample Accession: GSM4948768 ID: 304948768 6171. normoxia_1hr_Pol2_input_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600719 Sample Accession: GSM4948767 ID: 304948767 6172. normoxia_1hr_G4_ChIP_input.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600718 Sample Accession: GSM4948766 ID: 304948766 6173. normoxia_1hr_G4_ChIP_input.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600717 Sample Accession: GSM4948765 ID: 304948765 6174. normoxia_1hr_G4_ChIP_input.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600716 Sample Accession: GSM4948764 ID: 304948764 6175. no_TPL_1hr_input.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600715 Sample Accession: GSM4948763 ID: 304948763 6176. no_TPL_1hr_input.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600714 Sample Accession: GSM4948762 ID: 304948762 6177. no_TPL_1hr_input.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600713 Sample Accession: GSM4948761 ID: 304948761 6178. no_TPL_1hr_input.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600712 Sample Accession: GSM4948760 ID: 304948760 6179. no_DRB_1hr_input.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600711 Sample Accession: GSM4948759 ID: 304948759 6180. no_DRB_1hr_input.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600710 Sample Accession: GSM4948758 ID: 304948758 6181. no_DRB_1hr_input.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600709 Sample Accession: GSM4948757 ID: 304948757 6182. no_DRB_1hr_input.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600708 Sample Accession: GSM4948756 ID: 304948756 6183. hypoxia_1hr_Pol2_input_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600707 Sample Accession: GSM4948755 ID: 304948755 6184. hypoxia_1hr_Pol2_input_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600706 Sample Accession: GSM4948754 ID: 304948754 6185. hypoxia_1hr_Pol2_input_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600705 Sample Accession: GSM4948753 ID: 304948753 6186. hypoxia_1hr_Pol2_input_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600704 Sample Accession: GSM4948752 ID: 304948752 6187. hypoxia_1hr_Pol2_input_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600703 Sample Accession: GSM4948751 ID: 304948751 6188. hypoxia_1hr_G4_ChIP_input.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600702 Sample Accession: GSM4948750 ID: 304948750 6189. hypoxia_1hr_G4_ChIP_input.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600701 Sample Accession: GSM4948749 ID: 304948749 6190. hypoxia_1hr_G4_ChIP_input.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600700 Sample Accession: GSM4948748 ID: 304948748 6191. 100uM_DRB_1hr_input.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600699 Sample Accession: GSM4948747 ID: 304948747 6192. 100uM_DRB_1hr_input.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600698 Sample Accession: GSM4948746 ID: 304948746 6193. 100uM_DRB_1hr_input.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600697 Sample Accession: GSM4948745 ID: 304948745 6194. 100uM_DRB_1hr_input.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600696 Sample Accession: GSM4948744 ID: 304948744 6195. DMSO_control_2hr_normoxia_Pol2_input_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600695 Sample Accession: GSM4948743 ID: 304948743 6196. DMSO_control_2hr_normoxia_Pol2_input_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600694 Sample Accession: GSM4948742 ID: 304948742 6197. DMSO_control_2hr_normoxia_Pol2_input_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600693 Sample Accession: GSM4948741 ID: 304948741 6198. DMSO_control_2hr_normoxia_Pol2_input_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600692 Sample Accession: GSM4948740 ID: 304948740 6199. DMSO_control_2hr_normoxia_Pol2_input_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600691 Sample Accession: GSM4948739 ID: 304948739 6200. DMSO_control_2hr_hypoxia_Pol2_input_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600690 Sample Accession: GSM4948738 ID: 304948738 6201. DMSO_control_2hr_hypoxia_Pol2_input_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600689 Sample Accession: GSM4948737 ID: 304948737 6202. DMSO_control_2hr_hypoxia_Pol2_input_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600688 Sample Accession: GSM4948736 ID: 304948736 6203. DMSO_control_2hr_hypoxia_Pol2_input_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600687 Sample Accession: GSM4948735 ID: 304948735 6204. DMSO_control_2hr_hypoxia_Pol2_input_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600686 Sample Accession: GSM4948734 ID: 304948734 6205. 1uM_pyPDS_2hr_normoxia_Pol2_input_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600685 Sample Accession: GSM4948733 ID: 304948733 6206. 1uM_pyPDS_2hr_normoxia_Pol2_input_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600684 Sample Accession: GSM4948732 ID: 304948732 6207. 1uM_pyPDS_2hr_normoxia_Pol2_input_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600683 Sample Accession: GSM4948731 ID: 304948731 6208. 1uM_pyPDS_2hr_normoxia_Pol2_input_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600682 Sample Accession: GSM4948730 ID: 304948730 6209. 1uM_pyPDS_2hr_normoxia_Pol2_input_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600681 Sample Accession: GSM4948729 ID: 304948729 6210. 1uM_pyPDS_2hr_hypoxia_Pol2_input_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600680 Sample Accession: GSM4948728 ID: 304948728 6211. 1uM_pyPDS_2hr_hypoxia_Pol2_input_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600679 Sample Accession: GSM4948727 ID: 304948727 6212. 1uM_pyPDS_2hr_hypoxia_Pol2_input_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600678 Sample Accession: GSM4948726 ID: 304948726 6213. 1uM_pyPDS_2hr_hypoxia_Pol2_input_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600677 Sample Accession: GSM4948725 ID: 304948725 6214. 1uM_pyPDS_2hr_hypoxia_Pol2_input_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600676 Sample Accession: GSM4948724 ID: 304948724 6215. 10uM_TPL_2hr_input.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600675 Sample Accession: GSM4948723 ID: 304948723 6216. 10uM_TPL_2hr_input.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600674 Sample Accession: GSM4948722 ID: 304948722 6217. normoxia_1hr_whole_cell_ATACseq_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600673 Sample Accession: GSM4948721 ID: 304948721 6218. normoxia_1hr_whole_cell_ATACseq_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600672 Sample Accession: GSM4948720 ID: 304948720 6219. normoxia_1hr_whole_cell_ATACseq_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600671 Sample Accession: GSM4948719 ID: 304948719 6220. normoxia_1hr_Pol2_ChIP_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600670 Sample Accession: GSM4948718 ID: 304948718 6221. normoxia_1hr_Pol2_ChIP_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600669 Sample Accession: GSM4948717 ID: 304948717 6222. normoxia_1hr_Pol2_ChIP_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600668 Sample Accession: GSM4948716 ID: 304948716 6223. normoxia_1hr_Pol2_ChIP_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600667 Sample Accession: GSM4948715 ID: 304948715 6224. normoxia_1hr_Pol2_ChIP_biorep1 Organism: 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normoxia_1hr_G4_ChIP_rep1.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600663 Sample Accession: GSM4948711 ID: 304948711 6228. normoxia_1hr_G4_ChIP_rep3.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600662 Sample Accession: GSM4948710 ID: 304948710 6229. normoxia_1hr_G4_ChIP_rep2.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600661 Sample Accession: GSM4948709 ID: 304948709 6230. normoxia_1hr_G4_ChIP_rep1.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600660 Sample Accession: GSM4948708 ID: 304948708 6231. normoxia_1hr_G4_ChIP_rep3.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600659 Sample Accession: GSM4948707 ID: 304948707 6232. normoxia_1hr_G4_ChIP_rep2.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948706/ SRA Run Selector: 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Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600655 Sample Accession: GSM4948703 ID: 304948703 6236. no_DRB_1hr_rep1.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600654 Sample Accession: GSM4948702 ID: 304948702 6237. no_DRB_1hr_rep3.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600653 Sample Accession: GSM4948701 ID: 304948701 6238. no_DRB_1hr_rep2.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948700/ SRA Run 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Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600649 Sample Accession: GSM4948697 ID: 304948697 6242. no_DRB_1hr_rep1.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600648 Sample Accession: GSM4948696 ID: 304948696 6243. no_DRB_1hr_rep3.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600647 Sample Accession: GSM4948695 ID: 304948695 6244. no_DRB_1hr_rep2.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600646 Sample Accession: GSM4948694 ID: 304948694 6245. no_DRB_1hr_rep1.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600645 Sample Accession: GSM4948693 ID: 304948693 6246. no_TPL_1hr_rep3.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600644 Sample Accession: GSM4948692 ID: 304948692 6247. no_TPL_1hr_rep3.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600643 Sample Accession: GSM4948691 ID: 304948691 6248. no_TPL_1hr_rep2.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600642 Sample Accession: GSM4948690 ID: 304948690 6249. no_TPL_1hr_rep2.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600641 Sample Accession: GSM4948689 ID: 304948689 6250. no_TPL_1hr_rep1.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600640 Sample Accession: GSM4948688 ID: 304948688 6251. no_TPL_1hr_rep1.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600639 Sample Accession: GSM4948687 ID: 304948687 6252. no_TPL_1hr_rep3.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600638 Sample Accession: GSM4948686 ID: 304948686 6253. no_TPL_1hr_rep2.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600637 Sample Accession: GSM4948685 ID: 304948685 6254. no_TPL_1hr_rep1.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600636 Sample Accession: GSM4948684 ID: 304948684 6255. no_TPL_1hr_rep3.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600635 Sample Accession: GSM4948683 ID: 304948683 6256. no_TPL_1hr_rep2.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600634 Sample Accession: GSM4948682 ID: 304948682 6257. no_TPL_1hr_rep1.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600633 Sample Accession: GSM4948681 ID: 304948681 6258. hypoxia_1hr_whole_cell_ATACseq_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600632 Sample Accession: GSM4948680 ID: 304948680 6259. hypoxia_1hr_whole_cell_ATACseq_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600631 Sample Accession: GSM4948679 ID: 304948679 6260. hypoxia_1hr_whole_cell_ATACseq_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600630 Sample Accession: GSM4948678 ID: 304948678 6261. hypoxia_1hr_Pol2_ChIP_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600629 Sample Accession: GSM4948677 ID: 304948677 6262. hypoxia_1hr_Pol2_ChIP_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600628 Sample Accession: GSM4948676 ID: 304948676 6263. hypoxia_1hr_Pol2_ChIP_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600627 Sample Accession: GSM4948675 ID: 304948675 6264. hypoxia_1hr_Pol2_ChIP_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600626 Sample Accession: GSM4948674 ID: 304948674 6265. hypoxia_1hr_Pol2_ChIP_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600625 Sample Accession: GSM4948673 ID: 304948673 6266. hypoxia_1hr_G4_ChIP_rep3.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600624 Sample Accession: GSM4948672 ID: 304948672 6267. hypoxia_1hr_G4_ChIP_rep2.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600623 Sample Accession: GSM4948671 ID: 304948671 6268. hypoxia_1hr_G4_ChIP_rep1.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600622 Sample Accession: GSM4948670 ID: 304948670 6269. hypoxia_1hr_G4_ChIP_rep3.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600621 Sample Accession: GSM4948669 ID: 304948669 6270. hypoxia_1hr_G4_ChIP_rep2.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600620 Sample Accession: GSM4948668 ID: 304948668 6271. hypoxia_1hr_G4_ChIP_rep1.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600619 Sample Accession: GSM4948667 ID: 304948667 6272. hypoxia_1hr_G4_ChIP_rep3.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600618 Sample Accession: GSM4948666 ID: 304948666 6273. hypoxia_1hr_G4_ChIP_rep2.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600617 Sample Accession: GSM4948665 ID: 304948665 6274. hypoxia_1hr_G4_ChIP_rep1.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600616 Sample Accession: GSM4948664 ID: 304948664 6275. 100uM_DRB_1hr_rep3.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600615 Sample Accession: GSM4948663 ID: 304948663 6276. 100uM_DRB_1hr_rep2.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600614 Sample Accession: GSM4948662 ID: 304948662 6277. 100uM_DRB_1hr_rep1.bio4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600613 Sample Accession: GSM4948661 ID: 304948661 6278. 100uM_DRB_1hr_rep3.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600612 Sample Accession: GSM4948660 ID: 304948660 6279. 100uM_DRB_1hr_rep2.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600611 Sample Accession: GSM4948659 ID: 304948659 6280. 100uM_DRB_1hr_rep1.bio3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600610 Sample Accession: GSM4948658 ID: 304948658 6281. 100uM_DRB_1hr_rep3.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600609 Sample Accession: GSM4948657 ID: 304948657 6282. 100uM_DRB_1hr_rep3.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600608 Sample Accession: GSM4948656 ID: 304948656 6283. 100uM_DRB_1hr_rep2.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600607 Sample Accession: GSM4948655 ID: 304948655 6284. 100uM_DRB_1hr_rep2.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600606 Sample Accession: GSM4948654 ID: 304948654 6285. 100uM_DRB_1hr_rep1.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600605 Sample Accession: GSM4948653 ID: 304948653 6286. 100uM_DRB_1hr_rep1.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600604 Sample Accession: GSM4948652 ID: 304948652 6287. DMSO_control_2hr_normoxia_whole_cell_ATACseq_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600603 Sample Accession: GSM4948651 ID: 304948651 6288. DMSO_control_2hr_normoxia_whole_cell_ATACseq_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600602 Sample Accession: GSM4948650 ID: 304948650 6289. DMSO_control_2hr_normoxia_whole_cell_ATACseq_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600601 Sample Accession: GSM4948649 ID: 304948649 6290. DMSO_control_2hr_normoxia_Pol2_ChIP_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600600 Sample Accession: GSM4948648 ID: 304948648 6291. DMSO_control_2hr_normoxia_Pol2_ChIP_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600599 Sample Accession: GSM4948647 ID: 304948647 6292. DMSO_control_2hr_normoxia_Pol2_ChIP_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600598 Sample Accession: GSM4948646 ID: 304948646 6293. DMSO_control_2hr_normoxia_Pol2_ChIP_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600597 Sample Accession: GSM4948645 ID: 304948645 6294. DMSO_control_2hr_normoxia_Pol2_ChIP_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600596 Sample Accession: GSM4948644 ID: 304948644 6295. DMSO_control_2hr_hypoxia_whole_cell_ATACseq_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600595 Sample Accession: GSM4948643 ID: 304948643 6296. DMSO_control_2hr_hypoxia_whole_cell_ATACseq_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600594 Sample Accession: GSM4948642 ID: 304948642 6297. DMSO_control_2hr_hypoxia_whole_cell_ATACseq_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600593 Sample Accession: GSM4948641 ID: 304948641 6298. DMSO_control_2hr_hypoxia_Pol2_ChIP_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600592 Sample Accession: GSM4948640 ID: 304948640 6299. DMSO_control_2hr_hypoxia_Pol2_ChIP_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600591 Sample Accession: GSM4948639 ID: 304948639 6300. DMSO_control_2hr_hypoxia_Pol2_ChIP_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600590 Sample Accession: GSM4948638 ID: 304948638 6301. DMSO_control_2hr_hypoxia_Pol2_ChIP_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600589 Sample Accession: GSM4948637 ID: 304948637 6302. DMSO_control_2hr_hypoxia_Pol2_ChIP_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600588 Sample Accession: GSM4948636 ID: 304948636 6303. 1uM_pyPDS_2hr_normoxia_whole_cell_ATACseq_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600587 Sample Accession: GSM4948635 ID: 304948635 6304. 1uM_pyPDS_2hr_normoxia_whole_cell_ATACseq_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600586 Sample Accession: GSM4948634 ID: 304948634 6305. 1uM_pyPDS_2hr_normoxia_whole_cell_ATACseq_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600585 Sample Accession: GSM4948633 ID: 304948633 6306. 1uM_pyPDS_2hr_normoxia_Pol2_ChIP_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600584 Sample Accession: GSM4948632 ID: 304948632 6307. 1uM_pyPDS_2hr_normoxia_Pol2_ChIP_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600583 Sample Accession: GSM4948631 ID: 304948631 6308. 1uM_pyPDS_2hr_normoxia_Pol2_ChIP_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600582 Sample Accession: GSM4948630 ID: 304948630 6309. 1uM_pyPDS_2hr_normoxia_Pol2_ChIP_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600581 Sample Accession: GSM4948629 ID: 304948629 6310. 1uM_pyPDS_2hr_normoxia_Pol2_ChIP_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600580 Sample Accession: GSM4948628 ID: 304948628 6311. 1uM_pyPDS_2hr_hypoxia_whole_cell_ATACseq_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600579 Sample Accession: GSM4948627 ID: 304948627 6312. 1uM_pyPDS_2hr_hypoxia_whole_cell_ATACseq_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600578 Sample Accession: GSM4948626 ID: 304948626 6313. 1uM_pyPDS_2hr_hypoxia_whole_cell_ATACseq_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600577 Sample Accession: GSM4948625 ID: 304948625 6314. 1uM_pyPDS_2hr_hypoxia_Pol2_ChIP_biorep5 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600576 Sample Accession: GSM4948624 ID: 304948624 6315. 1uM_pyPDS_2hr_hypoxia_Pol2_ChIP_biorep4 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600575 Sample Accession: GSM4948623 ID: 304948623 6316. 1uM_pyPDS_2hr_hypoxia_Pol2_ChIP_biorep3 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600574 Sample Accession: GSM4948622 ID: 304948622 6317. 1uM_pyPDS_2hr_hypoxia_Pol2_ChIP_biorep2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600573 Sample Accession: GSM4948621 ID: 304948621 6318. 1uM_pyPDS_2hr_hypoxia_Pol2_ChIP_biorep1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600572 Sample Accession: GSM4948620 ID: 304948620 6319. 10uM_TPL_2hr_rep3.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600571 Sample Accession: GSM4948619 ID: 304948619 6320. 10uM_TPL_2hr_rep3.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600570 Sample Accession: GSM4948618 ID: 304948618 6321. 10uM_TPL_2hr_rep2.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600569 Sample Accession: GSM4948617 ID: 304948617 6322. 10uM_TPL_2hr_rep2.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600568 Sample Accession: GSM4948616 ID: 304948616 6323. 10uM_TPL_2hr_rep1.bio2 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600567 Sample Accession: GSM4948615 ID: 304948615 6324. 10uM_TPL_2hr_rep1.bio1 Organism: Homo sapiens Source name: cultured K562 cells Platform: GPL18573 Series: GSE162299 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4948nnn/GSM4948614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9600566 Sample Accession: GSM4948614 ID: 304948614 6325. Day 7 Treg 6_BF-ATAC-6 Organism: Homo sapiens Source name: PBMCs Platform: GPL21290 Series: GSE171186 GSE171190 FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5220nnn/GSM5220495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10484366 Sample Accession: GSM5220495 ID: 305220495 6326. Day 0 1_BF-ATAC-1 Organism: Homo sapiens Source name: PBMCs Platform: GPL21290 Series: GSE171186 GSE171190 FTP download: GEO (BED, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5220nnn/GSM5220494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10484365 Sample Accession: GSM5220494 ID: 305220494 6327. ATAC-seq from mucosa of gallbladder (ENCLB501MJZ) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) mucosa of gallbladder tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170988 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478656 Sample Accession: GSM5215777 ID: 305215777 6328. ATAC-seq from mucosa of gallbladder (ENCLB723WFD) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) mucosa of gallbladder tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170988 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478655 Sample Accession: GSM5215776 ID: 305215776 6329. ATAC-seq from right lobe of liver (ENCLB306JUA) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) right lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170971 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215749/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478628 Sample Accession: GSM5215749 ID: 305215749 6330. ATAC-seq from right lobe of liver (ENCLB096KKD) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) right lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170971 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215748/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478627 Sample Accession: GSM5215748 ID: 305215748 6331. ATAC-seq from left lung (ENCLB868GIF) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) left lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170968 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478624 Sample Accession: GSM5215745 ID: 305215745 6332. ATAC-seq from left lung (ENCLB526UTI) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) left lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170968 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478623 Sample Accession: GSM5215744 ID: 305215744 6333. ATAC-seq from adrenal gland (ENCLB941IVS) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170937 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478575 Sample Accession: GSM5215701 ID: 305215701 6334. ATAC-seq from adrenal gland (ENCLB374EPF) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170937 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478574 Sample Accession: GSM5215700 ID: 305215700 6335. ATAC-seq from GM12878 (ENCLB802IWU) Organism: Homo sapiens Source name: Homo sapiens GM12878 cell line Platform: GPL24676 Series: GSE170918 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478548 Sample Accession: GSM5215674 ID: 305215674 6336. ATAC-seq from GM12878 (ENCLB873CZV) Organism: Homo sapiens Source name: Homo sapiens GM12878 cell line Platform: GPL24676 Series: GSE170918 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478547 Sample Accession: GSM5215673 ID: 305215673 6337. ATAC-seq from GM12878 (ENCLB792FPR) Organism: Homo sapiens Source name: Homo sapiens GM12878 cell line Platform: GPL24676 Series: GSE170918 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478546 Sample Accession: GSM5215672 ID: 305215672 6338. ATAC-seq from left lobe of liver (ENCLB556ZGU) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) left lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170899 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478521 Sample Accession: GSM5215647 ID: 305215647 6339. ATAC-seq from left lobe of liver (ENCLB877UAL) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) left lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170899 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478520 Sample Accession: GSM5215646 ID: 305215646 6340. ATAC-seq from right lobe of liver (ENCLB589CNK) Organism: Homo sapiens Source name: Homo sapiens male adult (45 years) right lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170876 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478486 Sample Accession: GSM5215612 ID: 305215612 6341. ATAC-seq from right lobe of liver (ENCLB115ETJ) Organism: Homo sapiens Source name: Homo sapiens male adult (45 years) right lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170876 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478485 Sample Accession: GSM5215611 ID: 305215611 6342. ATAC-seq from ovary (ENCLB396PCY) Organism: Homo sapiens Source name: Homo sapiens female adult (46 years) ovary tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170869 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478473 Sample Accession: GSM5215599 ID: 305215599 6343. ATAC-seq from ovary (ENCLB102TXL) Organism: Homo sapiens Source name: Homo sapiens female adult (46 years) ovary tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170869 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478472 Sample Accession: GSM5215598 ID: 305215598 6344. ATAC-seq from upper lobe of right lung (ENCLB853USO) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) upper lobe of right lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170862 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478461 Sample Accession: GSM5215587 ID: 305215587 6345. ATAC-seq from upper lobe of right lung (ENCLB488OAO) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) upper lobe of right lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170862 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478460 Sample Accession: GSM5215586 ID: 305215586 6346. ATAC-seq from left colon (ENCLB347CEE) Organism: Homo sapiens Source name: Homo sapiens female adult (46 years) left colon tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170848 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478430 Sample Accession: GSM5215564 ID: 305215564 6347. ATAC-seq from left colon (ENCLB555UOT) Organism: Homo sapiens Source name: Homo sapiens female adult (46 years) left colon tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170848 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478429 Sample Accession: GSM5215563 ID: 305215563 6348. ATAC-seq from colonic mucosa (ENCLB717RFD) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) colonic mucosa tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478388 Sample Accession: GSM5215522 ID: 305215522 6349. ATAC-seq from colonic mucosa (ENCLB647BMK) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) colonic mucosa tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478387 Sample Accession: GSM5215521 ID: 305215521 6350. ATAC-seq from colonic mucosa (ENCLB361VLL) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) colonic mucosa tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478386 Sample Accession: GSM5215520 ID: 305215520 6351. ATAC-seq from colonic mucosa (ENCLB558HSL) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) colonic mucosa tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215519/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478385 Sample Accession: GSM5215519 ID: 305215519 6352. ATAC-seq from heart left ventricle (ENCLB824CNG) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) heart left ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170791 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215465/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478342 Sample Accession: GSM5215465 ID: 305215465 6353. ATAC-seq from heart left ventricle (ENCLB713CCC) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) heart left ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170791 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478341 Sample Accession: GSM5215464 ID: 305215464 6354. ATAC-seq from ovary (ENCLB655WGV) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) ovary tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170765 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478300 Sample Accession: GSM5215423 ID: 305215423 6355. ATAC-seq from ovary (ENCLB053UVB) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) ovary tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170765 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478299 Sample Accession: GSM5215422 ID: 305215422 6356. ATAC-seq from right lobe of liver (ENCLB651BJK) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) right lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170761 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478234 Sample Accession: GSM5215382 ID: 305215382 6357. ATAC-seq from right lobe of liver (ENCLB601CFI) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) right lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170761 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478233 Sample Accession: GSM5215381 ID: 305215381 6358. ATAC-seq from left cardiac atrium (ENCLB219EZG) Organism: Homo sapiens Source name: Homo sapiens female adult (42 years) left cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170758 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478230 Sample Accession: GSM5215378 ID: 305215378 6359. ATAC-seq from left cardiac atrium (ENCLB100KAW) Organism: Homo sapiens Source name: Homo sapiens female adult (42 years) left cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170758 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478229 Sample Accession: GSM5215377 ID: 305215377 6360. ATAC-seq from lower lobe of right lung (ENCLB485ZFG) Organism: Homo sapiens Source name: Homo sapiens female adult (65 years) lower lobe of right lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170747 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215349/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478215 Sample Accession: GSM5215349 ID: 305215349 6361. ATAC-seq from lower lobe of right lung (ENCLB954AUD) Organism: Homo sapiens Source name: Homo sapiens female adult (65 years) lower lobe of right lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170747 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478214 Sample Accession: GSM5215348 ID: 305215348 6362. ATAC-seq from heart right ventricle (ENCLB477FZO) Organism: Homo sapiens Source name: Homo sapiens male adult (61 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170721 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478126 Sample Accession: GSM5215292 ID: 305215292 6363. ATAC-seq from heart right ventricle (ENCLB133TCL) Organism: Homo sapiens Source name: Homo sapiens male adult (61 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170721 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478125 Sample Accession: GSM5215291 ID: 305215291 6364. ATAC-seq from lower lobe of left lung (ENCLB162DSS) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) lower lobe of left lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170676 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478051 Sample Accession: GSM5215222 ID: 305215222 6365. ATAC-seq from lower lobe of left lung (ENCLB036LSV) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) lower lobe of left lung tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170676 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478050 Sample Accession: GSM5215221 ID: 305215221 6366. ATAC-seq from heart left ventricle (ENCLB306VEB) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) heart left ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170652 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478019 Sample Accession: GSM5215182 ID: 305215182 6367. ATAC-seq from heart left ventricle (ENCLB841XEI) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) heart left ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170652 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478018 Sample Accession: GSM5215181 ID: 305215181 6368. ATAC-seq from adrenal gland (ENCLB251LVK) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170643 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478003 Sample Accession: GSM5215166 ID: 305215166 6369. ATAC-seq from adrenal gland (ENCLB997SPR) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170643 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478002 Sample Accession: GSM5215165 ID: 305215165 6370. ATAC-seq from pancreas (ENCLB329PIQ) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170632 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477984 Sample Accession: GSM5215147 ID: 305215147 6371. ATAC-seq from pancreas (ENCLB558PZC) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170632 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477983 Sample Accession: GSM5215146 ID: 305215146 6372. ATAC-seq from right cardiac atrium (ENCLB771GVY) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) right cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170630 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477800 Sample Accession: GSM5215143 ID: 305215143 6373. ATAC-seq from right cardiac atrium (ENCLB100KLO) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) right cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170630 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477799 Sample Accession: GSM5215142 ID: 305215142 6374. ATAC-seq from posterior vena cava (ENCLB523IAG) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) posterior vena cava tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170616 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477252 Sample Accession: GSM5215124 ID: 305215124 6375. ATAC-seq from posterior vena cava (ENCLB299OBO) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) posterior vena cava tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170616 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477251 Sample Accession: GSM5215123 ID: 305215123 6376. ATAC-seq from mesenteric fat pad (ENCLB032NCZ) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) mesenteric fat pad tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170604 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477232 Sample Accession: GSM5215104 ID: 305215104 6377. ATAC-seq from mesenteric fat pad (ENCLB102OSL) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) mesenteric fat pad tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170604 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477231 Sample Accession: GSM5215103 ID: 305215103 6378. ATAC-seq from adrenal gland (ENCLB599VPK) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170550 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476785 Sample Accession: GSM5215017 ID: 305215017 6379. ATAC-seq from adrenal gland (ENCLB677QLR) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170550 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476784 Sample Accession: GSM5215016 ID: 305215016 6380. ATAC-seq from psoas muscle (ENCLB761JWC) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) psoas muscle tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170518 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476735 Sample Accession: GSM5214967 ID: 305214967 6381. ATAC-seq from psoas muscle (ENCLB723FWO) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) psoas muscle tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170518 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476734 Sample Accession: GSM5214966 ID: 305214966 6382. ATAC-seq from heart right ventricle (ENCLB382ZXT) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170517 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476733 Sample Accession: GSM5214965 ID: 305214965 6383. ATAC-seq from heart right ventricle (ENCLB852JMY) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170517 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476732 Sample Accession: GSM5214964 ID: 305214964 6384. ATAC-seq from mucosa of urinary bladder (ENCLB787GMJ) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) mucosa of urinary bladder tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170508 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476720 Sample Accession: GSM5214952 ID: 305214952 6385. ATAC-seq from mucosa of urinary bladder (ENCLB969IYF) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) mucosa of urinary bladder tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170508 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476719 Sample Accession: GSM5214951 ID: 305214951 6386. ATAC-seq from pancreas (ENCLB785GJL) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170507 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476718 Sample Accession: GSM5214950 ID: 305214950 6387. ATAC-seq from pancreas (ENCLB833OIK) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170507 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476717 Sample Accession: GSM5214949 ID: 305214949 6388. ATAC-seq from psoas muscle (ENCLB333EEQ) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) psoas muscle tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170491 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476692 Sample Accession: GSM5214924 ID: 305214924 6389. ATAC-seq from psoas muscle (ENCLB852DIZ) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) psoas muscle tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170491 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476691 Sample Accession: GSM5214923 ID: 305214923 6390. ATAC-seq from heart right ventricle (ENCLB271RYI) Organism: Homo sapiens Source name: Homo sapiens male adult (43 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170470 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476661 Sample Accession: GSM5214893 ID: 305214893 6391. ATAC-seq from heart right ventricle (ENCLB629DEH) Organism: Homo sapiens Source name: Homo sapiens male adult (43 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170470 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476660 Sample Accession: GSM5214892 ID: 305214892 6392. ATAC-seq from left ventricle myocardium superior (ENCLB672AHE) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) left ventricle myocardium superior tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170444 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476627 Sample Accession: GSM5214859 ID: 305214859 6393. ATAC-seq from left ventricle myocardium superior (ENCLB758OFF) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) left ventricle myocardium superior tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170444 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476626 Sample Accession: GSM5214858 ID: 305214858 6394. ATAC-seq from heart right ventricle (ENCLB394FCF) Organism: Homo sapiens Source name: Homo sapiens male adult (69 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170433 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476608 Sample Accession: GSM5214840 ID: 305214840 6395. ATAC-seq from heart right ventricle (ENCLB323CCD) Organism: Homo sapiens Source name: Homo sapiens male adult (69 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170433 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476607 Sample Accession: GSM5214839 ID: 305214839 6396. ATAC-seq from right lobe of liver (ENCLB368ROS) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) right lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170430 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214835/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476603 Sample Accession: GSM5214835 ID: 305214835 6397. ATAC-seq from right lobe of liver (ENCLB863COR) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) right lobe of liver tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170430 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476602 Sample Accession: GSM5214834 ID: 305214834 6398. ATAC-seq from K562 (ENCLB568PER) Organism: Homo sapiens Source name: Homo sapiens K562 cell line Platform: GPL24676 Series: GSE170378 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476526 Sample Accession: GSM5214758 ID: 305214758 6399. ATAC-seq from K562 (ENCLB292FDF) Organism: Homo sapiens Source name: Homo sapiens K562 cell line Platform: GPL24676 Series: GSE170378 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476525 Sample Accession: GSM5214757 ID: 305214757 6400. ATAC-seq from K562 (ENCLB674HYQ) Organism: Homo sapiens Source name: Homo sapiens K562 cell line Platform: GPL24676 Series: GSE170378 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476524 Sample Accession: GSM5214756 ID: 305214756 6401. ATAC-seq from sciatic nerve (ENCLB361DIU) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) sciatic nerve tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170354 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475893 Sample Accession: GSM5214720 ID: 305214720 6402. ATAC-seq from sciatic nerve (ENCLB092UDZ) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) sciatic nerve tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170354 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475892 Sample Accession: GSM5214719 ID: 305214719 6403. ATAC-seq from adrenal gland (ENCLB984HGB) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170353 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475891 Sample Accession: GSM5214718 ID: 305214718 6404. ATAC-seq from adrenal gland (ENCLB380AEA) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170353 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475890 Sample Accession: GSM5214717 ID: 305214717 6405. ATAC-seq from left cardiac atrium (ENCLB070MYF) Organism: Homo sapiens Source name: Homo sapiens male adult (40 years) left cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170327 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475850 Sample Accession: GSM5214677 ID: 305214677 6406. ATAC-seq from left cardiac atrium (ENCLB648ZBR) Organism: Homo sapiens Source name: Homo sapiens male adult (40 years) left cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170327 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475849 Sample Accession: GSM5214676 ID: 305214676 6407. ATAC-seq from Right ventricle myocardium inferior (ENCLB816ZDW) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) Right ventricle myocardium inferior tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170321 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475841 Sample Accession: GSM5214668 ID: 305214668 6408. ATAC-seq from Right ventricle myocardium inferior (ENCLB122LSW) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) Right ventricle myocardium inferior tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170321 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475840 Sample Accession: GSM5214667 ID: 305214667 6409. ATAC-seq from heart left ventricle (ENCLB043ELP) Organism: Homo sapiens Source name: Homo sapiens male adult (43 years) heart left ventricle tissue Platform: GPL24676 Series: GSE170318 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475837 Sample Accession: GSM5214664 ID: 305214664 6410. ATAC-seq from heart left ventricle (ENCLB664QYP) Organism: Homo sapiens Source name: Homo sapiens male adult (43 years) heart left ventricle tissue Platform: GPL24676 Series: GSE170318 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475836 Sample Accession: GSM5214663 ID: 305214663 6411. ATAC-seq from mucosa of descending colon (ENCLB875UFQ) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) mucosa of descending colon tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170309 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475825 Sample Accession: GSM5214652 ID: 305214652 6412. ATAC-seq from mucosa of descending colon (ENCLB246GTQ) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) mucosa of descending colon tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170309 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475824 Sample Accession: GSM5214651 ID: 305214651 6413. ATAC-seq from adrenal gland (ENCLB109CVY) Organism: Homo sapiens Source name: Homo sapiens adrenal gland tissue male adult (37 years) Platform: GPL11154 Series: GSE170578 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10477189 Sample Accession: GSM5215060 ID: 305215060 6414. ATAC-seq from adrenal gland (ENCLB245QUV) Organism: Homo sapiens Source name: Homo sapiens adrenal gland tissue male adult (54 years) Platform: GPL11154 Series: GSE170314 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475832 Sample Accession: GSM5214659 ID: 305214659 6415. ATAC-seq from gastrocnemius medialis (ENCLB850JUY) Organism: Homo sapiens Source name: Homo sapiens gastrocnemius medialis tissue male adult (54 years) Platform: GPL11154 Series: GSE170304 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475818 Sample Accession: GSM5214644 ID: 305214644 6416. ATAC-seq from gastroesophageal sphincter (ENCLB706KPG) Organism: Homo sapiens Source name: Homo sapiens female adult (53 years) gastroesophageal sphincter tissue Platform: GPL20301 Series: GSE170959 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478609 Sample Accession: GSM5215731 ID: 305215731 6417. ATAC-seq from tibial artery (ENCLB494OMK) Organism: Homo sapiens Source name: Homo sapiens male adult (54 years) tibial artery tissue Platform: GPL20301 Series: GSE170909 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478534 Sample Accession: GSM5215660 ID: 305215660 6418. ATAC-seq from Panc1 (ENCLB787GWK) Organism: Homo sapiens Source name: Homo sapiens Panc1 cell line Platform: GPL20301 Series: GSE170824 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478394 Sample Accession: GSM5215528 ID: 305215528 6419. ATAC-seq from Panc1 (ENCLB319FWG) Organism: Homo sapiens Source name: Homo sapiens Panc1 cell line Platform: GPL20301 Series: GSE170824 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5215nnn/GSM5215527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10478393 Sample Accession: GSM5215527 ID: 305215527 6420. ATAC-seq from stomach (ENCLB361UQY) Organism: Homo sapiens Source name: Homo sapiens stomach tissue female adult (53 years) Platform: GPL20301 Series: GSE170447 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214862/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476630 Sample Accession: GSM5214862 ID: 305214862 6421. ATAC-seq from HCT116 (ENCLB404KGX) Organism: Homo sapiens Source name: Homo sapiens HCT116 cell line Platform: GPL20301 Series: GSE170407 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476569 Sample Accession: GSM5214801 ID: 305214801 6422. ATAC-seq from HCT116 (ENCLB310CQI) Organism: Homo sapiens Source name: Homo sapiens HCT116 cell line Platform: GPL20301 Series: GSE170407 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10476568 Sample Accession: GSM5214800 ID: 305214800 6423. ATAC-seq from PC-3 (ENCLB029QHA) Organism: Homo sapiens Source name: Homo sapiens PC-3 cell line Platform: GPL20301 Series: GSE170337 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475867 Sample Accession: GSM5214694 ID: 305214694 6424. ATAC-seq from PC-3 (ENCLB402HCF) Organism: Homo sapiens Source name: Homo sapiens PC-3 cell line Platform: GPL20301 Series: GSE170337 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475866 Sample Accession: GSM5214693 ID: 305214693 6425. ATAC-seq from sigmoid colon (ENCLB810ERU) Organism: Homo sapiens Source name: Homo sapiens sigmoid colon tissue female adult (53 years) Platform: GPL20301 Series: GSE170300 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475813 Sample Accession: GSM5214639 ID: 305214639 6426. ATAC-seq from GM12878 (ENCLB584REF) Organism: Homo sapiens Source name: Homo sapiens GM12878 cell line Platform: GPL20301 Series: GSE170245 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475725 Sample Accession: GSM5214551 ID: 305214551 6427. ATAC-seq from GM12878 (ENCLB907YRF) Organism: Homo sapiens Source name: Homo sapiens GM12878 cell line Platform: GPL20301 Series: GSE170245 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475724 Sample Accession: GSM5214550 ID: 305214550 6428. ATAC-seq from K562 (ENCLB918NXF) Organism: Homo sapiens Source name: Homo sapiens K562 cell line Platform: GPL20301 Series: GSE170214 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214504/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475678 Sample Accession: GSM5214504 ID: 305214504 6429. ATAC-seq from K562 (ENCLB758GEG) Organism: Homo sapiens Source name: Homo sapiens K562 cell line Platform: GPL20301 Series: GSE170214 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475677 Sample Accession: GSM5214503 ID: 305214503 6430. ATAC-seq from HepG2 (ENCLB074EQT) Organism: Homo sapiens Source name: Homo sapiens HepG2 cell line Platform: GPL20301 Series: GSE170012 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475331 Sample Accession: GSM5214187 ID: 305214187 6431. ATAC-seq from HepG2 (ENCLB324GIU) Organism: Homo sapiens Source name: Homo sapiens HepG2 cell line Platform: GPL20301 Series: GSE170012 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475330 Sample Accession: GSM5214186 ID: 305214186 6432. ATAC-seq from MCF-7 (ENCLB303WWU) Organism: Homo sapiens Source name: Homo sapiens MCF-7 cell line Platform: GPL20301 Series: GSE169929 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475184 Sample Accession: GSM5214059 ID: 305214059 6433. ATAC-seq from MCF-7 (ENCLB657JDY) Organism: Homo sapiens Source name: Homo sapiens MCF-7 cell line Platform: GPL20301 Series: GSE169929 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475183 Sample Accession: GSM5214058 ID: 305214058 6434. ATAC-seq from transverse colon (ENCLB851ZKF) Organism: Homo sapiens Source name: Homo sapiens transverse colon tissue female adult (53 years) Platform: GPL20301 Series: GSE169798 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474959 Sample Accession: GSM5213857 ID: 305213857 6435. ATAC-seq from thyroid gland (ENCLB417KHV) Organism: Homo sapiens Source name: Homo sapiens thyroid gland tissue female adult (51 year) Platform: GPL20301 Series: GSE169771 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474882 Sample Accession: GSM5213810 ID: 305213810 6436. ATAC-seq from IMR-90 (ENCLB432QLN) Organism: Homo sapiens Source name: Homo sapiens IMR-90 cell line Platform: GPL20301 Series: GSE169767 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474877 Sample Accession: GSM5213805 ID: 305213805 6437. ATAC-seq from IMR-90 (ENCLB937FOM) Organism: Homo sapiens Source name: Homo sapiens IMR-90 cell line Platform: GPL20301 Series: GSE169767 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474876 Sample Accession: GSM5213804 ID: 305213804 6438. ATAC-seq from cerebellum (ENCLB028LZH) Organism: Homo sapiens Source name: Homo sapiens male adult (20 years) cerebellum tissue Platform: GPL16791 Series: GSE170195 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475648 Sample Accession: GSM5214474 ID: 305214474 6439. ATAC-seq from posterior cingulate cortex (ENCLB073DLE) Organism: Homo sapiens Source name: Homo sapiens male adult (20 years) posterior cingulate cortex tissue Platform: GPL16791 Series: GSE169891 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475126 Sample Accession: GSM5214001 ID: 305214001 6440. ATAC-seq from thyroid gland (ENCLB285URY) Organism: Homo sapiens Source name: Homo sapiens thyroid gland tissue male adult (54 years) Platform: GPL11154 Series: GSE170176 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475618 Sample Accession: GSM5214444 ID: 305214444 6441. ATAC-seq from gastrocnemius medialis (ENCLB317HCF) Organism: Homo sapiens Source name: Homo sapiens male adult (37 years) gastrocnemius medialis tissue Platform: GPL11154 Series: GSE170045 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475406 Sample Accession: GSM5214237 ID: 305214237 6442. ATAC-seq from body of pancreas (ENCLB987XWU) Organism: Homo sapiens Source name: Homo sapiens body of pancreas tissue male adult (54 years) Platform: GPL11154 Series: GSE170016 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475361 Sample Accession: GSM5214193 ID: 305214193 6443. ATAC-seq from esophagus mucosa (ENCLB997EAN) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) esophagus mucosa tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170282 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475784 Sample Accession: GSM5214610 ID: 305214610 6444. ATAC-seq from esophagus mucosa (ENCLB088AEN) Organism: Homo sapiens Source name: Homo sapiens female adult (47 years) esophagus mucosa tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170282 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475783 Sample Accession: GSM5214609 ID: 305214609 6445. ATAC-seq from mucosa of descending colon (ENCLB908DZP) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) mucosa of descending colon tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170280 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475780 Sample Accession: GSM5214606 ID: 305214606 6446. ATAC-seq from mucosa of descending colon (ENCLB166WNT) Organism: Homo sapiens Source name: Homo sapiens male adult (26 years) mucosa of descending colon tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170280 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475779 Sample Accession: GSM5214605 ID: 305214605 6447. ATAC-seq from HepG2 (ENCLB524DHQ) Organism: Homo sapiens Source name: Homo sapiens HepG2 cell line Platform: GPL24676 Series: GSE170251 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475734 Sample Accession: GSM5214560 ID: 305214560 6448. ATAC-seq from HepG2 (ENCLB050LMI) Organism: Homo sapiens Source name: Homo sapiens HepG2 cell line Platform: GPL24676 Series: GSE170251 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475733 Sample Accession: GSM5214559 ID: 305214559 6449. ATAC-seq from HepG2 (ENCLB750JRI) Organism: Homo sapiens Source name: Homo sapiens HepG2 cell line Platform: GPL24676 Series: GSE170251 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475732 Sample Accession: GSM5214558 ID: 305214558 6450. ATAC-seq from right lobe of liver (ENCLB277LSS) Organism: Homo sapiens Source name: Homo sapiens male adult (40 years) right lobe of liver tissue Platform: GPL24676 Series: GSE170250 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475731 Sample Accession: GSM5214557 ID: 305214557 6451. ATAC-seq from right lobe of liver (ENCLB334UWD) Organism: Homo sapiens Source name: Homo sapiens male adult (40 years) right lobe of liver tissue Platform: GPL24676 Series: GSE170250 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214556/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475730 Sample Accession: GSM5214556 ID: 305214556 6452. ATAC-seq from GM23338 (ENCLB629USE) Organism: Homo sapiens Source name: Homo sapiens GM23338 cell line Platform: GPL24676 Series: GSE170231 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475703 Sample Accession: GSM5214529 ID: 305214529 6453. ATAC-seq from GM23338 (ENCLB317QGI) Organism: Homo sapiens Source name: Homo sapiens GM23338 cell line Platform: GPL24676 Series: GSE170231 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475702 Sample Accession: GSM5214528 ID: 305214528 6454. ATAC-seq from GM23338 (ENCLB501SUW) Organism: Homo sapiens Source name: Homo sapiens GM23338 cell line Platform: GPL24676 Series: GSE170231 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475701 Sample Accession: GSM5214527 ID: 305214527 6455. ATAC-seq from heart left ventricle (ENCLB098UII) Organism: Homo sapiens Source name: Homo sapiens male adult (66 years) heart left ventricle tissue Platform: GPL24676 Series: GSE170227 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475696 Sample Accession: GSM5214522 ID: 305214522 6456. ATAC-seq from heart left ventricle (ENCLB423LCX) Organism: Homo sapiens Source name: Homo sapiens male adult (66 years) heart left ventricle tissue Platform: GPL24676 Series: GSE170227 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475695 Sample Accession: GSM5214521 ID: 305214521 6457. ATAC-seq from pancreas (ENCLB017VKK) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170216 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475681 Sample Accession: GSM5214507 ID: 305214507 6458. ATAC-seq from pancreas (ENCLB520BRU) Organism: Homo sapiens Source name: Homo sapiens female adult (41 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170216 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214506/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475680 Sample Accession: GSM5214506 ID: 305214506 6459. ATAC-seq from sciatic nerve (ENCLB641SGD) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) sciatic nerve tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170146 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475568 Sample Accession: GSM5214394 ID: 305214394 6460. ATAC-seq from sciatic nerve (ENCLB492MPX) Organism: Homo sapiens Source name: Homo sapiens female child (16 years) sciatic nerve tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170146 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475567 Sample Accession: GSM5214393 ID: 305214393 6461. ATAC-seq from heart right ventricle (ENCLB379PQL) Organism: Homo sapiens Source name: Homo sapiens male adult (54 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475457 Sample Accession: GSM5214283 ID: 305214283 6462. ATAC-seq from heart right ventricle (ENCLB460DEA) Organism: Homo sapiens Source name: Homo sapiens male adult (54 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475456 Sample Accession: GSM5214282 ID: 305214282 6463. ATAC-seq from uterus (ENCLB557IHG) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) uterus tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170053 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475423 Sample Accession: GSM5214249 ID: 305214249 6464. ATAC-seq from uterus (ENCLB065SZZ) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) uterus tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170053 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475422 Sample Accession: GSM5214248 ID: 305214248 6465. ATAC-seq from psoas muscle (ENCLB426YUP) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) psoas muscle tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170039 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214229/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475398 Sample Accession: GSM5214229 ID: 305214229 6466. ATAC-seq from psoas muscle (ENCLB329UYI) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) psoas muscle tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE170039 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214228/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475397 Sample Accession: GSM5214228 ID: 305214228 6467. ATAC-seq from pancreas (ENCLB032UJR) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170023 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475372 Sample Accession: GSM5214204 ID: 305214204 6468. ATAC-seq from pancreas (ENCLB751TGN) Organism: Homo sapiens Source name: Homo sapiens female adult (61 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170023 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475371 Sample Accession: GSM5214203 ID: 305214203 6469. ATAC-seq from heart right ventricle (ENCLB073SXC) Organism: Homo sapiens Source name: Homo sapiens male adult (66 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170014 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475359 Sample Accession: GSM5214191 ID: 305214191 6470. ATAC-seq from heart right ventricle (ENCLB544NXT) Organism: Homo sapiens Source name: Homo sapiens male adult (66 years) heart right ventricle tissue Platform: GPL24676 Series: GSE170014 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475358 Sample Accession: GSM5214190 ID: 305214190 6471. ATAC-seq from heart right ventricle (ENCLB425BUW) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170010 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475327 Sample Accession: GSM5214183 ID: 305214183 6472. ATAC-seq from heart right ventricle (ENCLB653ZDR) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE170010 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475326 Sample Accession: GSM5214182 ID: 305214182 6473. ATAC-seq from psoas muscle (ENCLB799QBP) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) psoas muscle tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE169990 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475288 Sample Accession: GSM5214150 ID: 305214150 6474. ATAC-seq from psoas muscle (ENCLB294GNU) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) psoas muscle tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE169990 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475287 Sample Accession: GSM5214149 ID: 305214149 6475. ATAC-seq from adrenal gland (ENCLB873DIU) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169983 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475276 Sample Accession: GSM5214138 ID: 305214138 6476. ATAC-seq from adrenal gland (ENCLB064BPS) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) adrenal gland tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169983 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475275 Sample Accession: GSM5214137 ID: 305214137 6477. ATAC-seq from A549 (ENCLB605LCC) Organism: Homo sapiens Source name: Homo sapiens A549 cell line Platform: GPL24676 Series: GSE169955 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475233 Sample Accession: GSM5214098 ID: 305214098 6478. ATAC-seq from A549 (ENCLB817BKI) Organism: Homo sapiens Source name: Homo sapiens A549 cell line Platform: GPL24676 Series: GSE169955 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475232 Sample Accession: GSM5214097 ID: 305214097 6479. ATAC-seq from A549 (ENCLB404SKN) Organism: Homo sapiens Source name: Homo sapiens A549 cell line Platform: GPL24676 Series: GSE169955 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5214nnn/GSM5214096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475231 Sample Accession: GSM5214096 ID: 305214096 6480. ATAC-seq from ovary (ENCLB392GEG) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) ovary tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169879 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475105 Sample Accession: GSM5213983 ID: 305213983 6481. ATAC-seq from ovary (ENCLB048OAY) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) ovary tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169879 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475104 Sample Accession: GSM5213982 ID: 305213982 6482. ATAC-seq from heart right ventricle (ENCLB000XTG) Organism: Homo sapiens Source name: Homo sapiens female adult (58 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169829 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213906/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475008 Sample Accession: GSM5213906 ID: 305213906 6483. ATAC-seq from heart right ventricle (ENCLB030ARZ) Organism: Homo sapiens Source name: Homo sapiens female adult (58 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169829 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10475007 Sample Accession: GSM5213905 ID: 305213905 6484. ATAC-seq from pancreas (ENCLB947OUY) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169809 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474975 Sample Accession: GSM5213873 ID: 305213873 6485. ATAC-seq from pancreas (ENCLB670MPP) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) pancreas tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169809 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474974 Sample Accession: GSM5213872 ID: 305213872 6486. ATAC-seq from right cardiac atrium (ENCLB893GWV) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) right cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169805 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474969 Sample Accession: GSM5213867 ID: 305213867 6487. ATAC-seq from right cardiac atrium (ENCLB741WSM) Organism: Homo sapiens Source name: Homo sapiens male adult (60 years) right cardiac atrium tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169805 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474968 Sample Accession: GSM5213866 ID: 305213866 6488. ATAC-seq from fallopian tube (ENCLB022QIU) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) fallopian tube tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE169789 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474944 Sample Accession: GSM5213842 ID: 305213842 6489. ATAC-seq from fallopian tube (ENCLB400DMG) Organism: Homo sapiens Source name: Homo sapiens female adult (59 years) fallopian tube tissue, preserved by flash-freezing Platform: GPL24676 Series: GSE169789 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474943 Sample Accession: GSM5213841 ID: 305213841 6490. ATAC-seq from heart right ventricle (ENCLB508UGM) Organism: Homo sapiens Source name: Homo sapiens male adult (46 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169772 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474914 Sample Accession: GSM5213812 ID: 305213812 6491. ATAC-seq from heart right ventricle (ENCLB955QQG) Organism: Homo sapiens Source name: Homo sapiens male adult (46 years) heart right ventricle tissue, preserved by cryopreservation Platform: GPL24676 Series: GSE169772 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5213nnn/GSM5213811/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10474913 Sample Accession: GSM5213811 ID: 305213811 6492. ATAC-seq_iN_CONTROL3-1 Organism: Homo sapiens Source name: induced neuron Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616896 Sample Accession: GSM3986469 ID: 303986469 6493. ATAC-seq_iN_CONTROL2-2 Organism: Homo sapiens Source name: induced neuron Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616895 Sample Accession: GSM3986468 ID: 303986468 6494. ATAC-seq_iN_CONTROL1-2 Organism: Homo sapiens Source name: induced neuron Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616894 Sample Accession: GSM3986467 ID: 303986467 6495. ATAC-seq_iN_DEL3-1 Organism: Homo sapiens Source name: induced neuron Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616893 Sample Accession: GSM3986466 ID: 303986466 6496. ATAC-seq_iN_DEL2-1 Organism: Homo sapiens Source name: induced neuron Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616892 Sample Accession: GSM3986465 ID: 303986465 6497. ATAC-seq_iN_DEL1-2 Organism: Homo sapiens Source name: induced neuron Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616891 Sample Accession: GSM3986464 ID: 303986464 6498. ATAC-seq_iPSC_CONTROL3-1 Organism: Homo sapiens Source name: iPSC Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616890 Sample Accession: GSM3986463 ID: 303986463 6499. ATAC-seq_iPSC_CONTROL2-2 Organism: Homo sapiens Source name: iPSC Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616889 Sample Accession: GSM3986462 ID: 303986462 6500. ATAC-seq_iPSC_CONTROL1-2 Organism: Homo sapiens Source name: iPSC Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616888 Sample Accession: GSM3986461 ID: 303986461 6501. ATAC-seq_iPSC_DEL3-1 Organism: Homo sapiens Source name: iPSC Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616887 Sample Accession: GSM3986460 ID: 303986460 6502. ATAC-seq_iPSC_DEL2-1 Organism: Homo sapiens Source name: iPSC Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616886 Sample Accession: GSM3986459 ID: 303986459 6503. ATAC-seq_iPSC_DEL1-2 Organism: Homo sapiens Source name: iPSC Platform: GPL18573 Series: GSE135131 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6616885 Sample Accession: GSM3986458 ID: 303986458 6504. PEA2_rep3 (ATAC-seq) Organism: Homo sapiens Source name: PEA2 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156958 Sample Accession: GSM4490954 ID: 304490954 6505. PEA2_rep2 (ATAC-seq) Organism: Homo sapiens Source name: PEA2 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156957 Sample Accession: GSM4490953 ID: 304490953 6506. PEA2_rep1 (ATAC-seq) Organism: Homo sapiens Source name: PEA2 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156956 Sample Accession: GSM4490952 ID: 304490952 6507. PEA1_rep3 (ATAC-seq) Organism: Homo sapiens Source name: PEA1 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156955 Sample Accession: GSM4490951 ID: 304490951 6508. PEA1_rep2 (ATAC-seq) Organism: Homo sapiens Source name: PEA1 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156954 Sample Accession: GSM4490950 ID: 304490950 6509. PEA1_rep1 (ATAC-seq) Organism: Homo sapiens Source name: PEA1 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156953 Sample Accession: GSM4490949 ID: 304490949 6510. PEO4_rep3 (ATAC-seq) Organism: Homo sapiens Source name: PEO4 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156952 Sample Accession: GSM4490948 ID: 304490948 6511. PEO4_rep2 (ATAC-seq) Organism: Homo sapiens Source name: PEO4 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156951 Sample Accession: GSM4490947 ID: 304490947 6512. PEO4_rep1 (ATAC-seq) Organism: Homo sapiens Source name: PEO4 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156950 Sample Accession: GSM4490946 ID: 304490946 6513. PEO1_rep3 (ATAC-seq) Organism: Homo sapiens Source name: PEO1 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156949 Sample Accession: GSM4490945 ID: 304490945 6514. PEO1_rep2 (ATAC-seq) Organism: Homo sapiens Source name: PEO1 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156948 Sample Accession: GSM4490944 ID: 304490944 6515. PEO1_rep1 (ATAC-seq) Organism: Homo sapiens Source name: PEO1 ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156947 Sample Accession: GSM4490943 ID: 304490943 6516. CP70_rep3 (ATAC-seq) Organism: Homo sapiens Source name: CP70 platinum-resistant endometrial/ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156946 Sample Accession: GSM4490942 ID: 304490942 6517. CP70_rep2 (ATAC-seq) Organism: Homo sapiens Source name: CP70 platinum-resistant endometrial/ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156945 Sample Accession: GSM4490941 ID: 304490941 6518. CP70_rep1 (ATAC-seq) Organism: Homo sapiens Source name: CP70 platinum-resistant endometrial/ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156944 Sample Accession: GSM4490940 ID: 304490940 6519. A2780_rep3 (ATAC-seq) Organism: Homo sapiens Source name: A2780 endometrial/ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156943 Sample Accession: GSM4490939 ID: 304490939 6520. A2780_rep2 (ATAC-seq) Organism: Homo sapiens Source name: A2780 endometrial/ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156942 Sample Accession: GSM4490938 ID: 304490938 6521. A2780_rep1 (ATAC-seq) Organism: Homo sapiens Source name: A2780 endometrial/ovarian cancer cells Platform: GPL16791 Series: GSE149145 GSE149147 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8156941 Sample Accession: GSM4490937 ID: 304490937 6522. h1 h2a.w-2 ATAC-seq rep 2 Organism: Arabidopsis thaliana Source name: seedlings Platform: GPL24270 Series: GSE146948 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5081nnn/GSM5081671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10089724 Sample Accession: GSM5081671 ID: 305081671 6523. h1 h2a.w-2 ATAC-seq rep 1 Organism: Arabidopsis thaliana Source name: seedlings Platform: GPL24270 Series: GSE146948 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5081nnn/GSM5081670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10089723 Sample Accession: GSM5081670 ID: 305081670 6524. h1 ATAC-seq rep 2 Organism: Arabidopsis thaliana Source name: seedlings Platform: GPL24270 Series: GSE146948 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5081nnn/GSM5081669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10089722 Sample Accession: GSM5081669 ID: 305081669 6525. h1 ATAC-seq rep 1 Organism: Arabidopsis thaliana Source name: seedlings Platform: GPL24270 Series: GSE146948 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5081nnn/GSM5081668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10089721 Sample Accession: GSM5081668 ID: 305081668 6526. h2a.w-2 ATAC-seq rep 2 Organism: Arabidopsis thaliana Source name: seedlings Platform: GPL24270 Series: GSE146948 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5081nnn/GSM5081667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10089720 Sample Accession: GSM5081667 ID: 305081667 6527. h2a.w-2 ATAC-seq rep 1 Organism: Arabidopsis thaliana Source name: seedlings Platform: GPL24270 Series: GSE146948 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5081nnn/GSM5081666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10089719 Sample Accession: GSM5081666 ID: 305081666 6528. wild-type ATAC-seq rep 2 Organism: Arabidopsis thaliana Source name: seedlings Platform: GPL24270 Series: GSE146948 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5081nnn/GSM5081665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10089718 Sample Accession: GSM5081665 ID: 305081665 6529. wild-type ATAC-seq rep 1 Organism: Arabidopsis thaliana Source name: seedlings Platform: GPL24270 Series: GSE146948 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5081nnn/GSM5081664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10089717 Sample Accession: GSM5081664 ID: 305081664 6530. ATAC-seq Organism: Homo sapiens Source name: iNeuron Platform: GPL21697 Series: GSE167252 GSE167259 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5100nnn/GSM5100364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10151060 Sample Accession: GSM5100364 ID: 305100364 6531. WIBR2_299_ATAC_PRIMED Organism: Homo sapiens Source name: hESCs, WIBR2 29-9 cell line Platform: GPL18573 Series: GSE124614 GSE125555 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5202454 Sample Accession: GSM3537870 ID: 303537870 6532. WIBR3_ATAC_PRIMED Organism: Homo sapiens Source name: hESCs, WIBR3 cell line Platform: GPL18573 Series: GSE124614 GSE125555 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5202453 Sample Accession: GSM3537869 ID: 303537869 6533. BF1_ATAC_PRIMED Organism: Homo sapiens Source name: hiPSCs, BF1 cell line Platform: GPL18573 Series: GSE124614 GSE125555 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5202452 Sample Accession: GSM3537868 ID: 303537868 6534. WIBR3_ATAC_HENSM Organism: Homo sapiens Source name: hESCs, WIBR3 cell line Platform: GPL18573 Series: GSE124614 GSE125555 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5202451 Sample Accession: GSM3537867 ID: 303537867 6535. LIS49_ATAC_HENSM Organism: Homo sapiens Source name: hESCs, LIS49 cell line Platform: GPL18573 Series: GSE124614 GSE125555 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5202450 Sample Accession: GSM3537866 ID: 303537866 6536. LIS41_ATAC_HENSM Organism: Homo sapiens Source name: hESCs, LIS41 cell line Platform: GPL18573 Series: GSE124614 GSE125555 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5202449 Sample Accession: GSM3537865 ID: 303537865 6537. WIBR2_298_ATAC_HENSM Organism: Homo sapiens Source name: hESCs, WIBR2 29-8 cell line Platform: GPL18573 Series: GSE124614 GSE125555 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5202448 Sample Accession: GSM3537864 ID: 303537864 6538. 3--3: BLEO/ML324 03 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664878 Sample Accession: GSM4011098 ID: 304011098 6539. 3--2: BLEO/ML324 02 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664877 Sample Accession: GSM4011097 ID: 304011097 6540. 3--1: BLEO/ML324 01 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664876 Sample Accession: GSM4011096 ID: 304011096 6541. 2--3: BLEO 03 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664875 Sample Accession: GSM4011095 ID: 304011095 6542. 2--2: BLEO 02 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664874 Sample Accession: GSM4011094 ID: 304011094 6543. 2--1: BLEO 01 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664873 Sample Accession: GSM4011093 ID: 304011093 6544. 1--3: CTRL 03 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664872 Sample Accession: GSM4011092 ID: 304011092 6545. 1--2: CTRL 02 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664871 Sample Accession: GSM4011091 ID: 304011091 6546. 1--1: CTRL 01 Organism: Homo sapiens Source name: Prostate stromal cell Platform: GPL24676 Series: GSE135481 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4011nnn/GSM4011090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6664870 Sample Accession: GSM4011090 ID: 304011090 6547. Loucy_ATAC_rep2 Organism: Homo sapiens Source name: cell line Platform: GPL20795 Series: GSE146901 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10338571 Sample Accession: GSM4409265 ID: 304409265 6548. Loucy_ATAC_rep1 Organism: Homo sapiens Source name: cell line Platform: GPL20795 Series: GSE146901 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10338570 Sample Accession: GSM4409264 ID: 304409264 6549. ISC very old rep3 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103815 Sample Accession: GSM4774883 ID: 304774883 6550. ISC very old rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103814 Sample Accession: GSM4774882 ID: 304774882 6551. ISC very old rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103813 Sample Accession: GSM4774881 ID: 304774881 6552. ISC young rep7 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103812 Sample Accession: GSM4774880 ID: 304774880 6553. ISC young rep6 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103811 Sample Accession: GSM4774879 ID: 304774879 6554. ISC young rep5 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103810 Sample Accession: GSM4774878 ID: 304774878 6555. ISC old rep3 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103809 Sample Accession: GSM4774877 ID: 304774877 6556. ISC old rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103808 Sample Accession: GSM4774876 ID: 304774876 6557. ISC old rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103807 Sample Accession: GSM4774875 ID: 304774875 6558. ISC mid age rep3 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103806 Sample Accession: GSM4774874 ID: 304774874 6559. ISC mid age rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103805 Sample Accession: GSM4774873 ID: 304774873 6560. ISC mid age rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103804 Sample Accession: GSM4774872 ID: 304774872 6561. ISC young rep4 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103803 Sample Accession: GSM4774871 ID: 304774871 6562. ISC young rep3 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103802 Sample Accession: GSM4774870 ID: 304774870 6563. ISC young rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103801 Sample Accession: GSM4774869 ID: 304774869 6564. ISC young rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: intestinal stem cells Platform: GPL17275 Series: GSE157776 GSE157796 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9103800 Sample Accession: GSM4774868 ID: 304774868 6565. ATAC-seq_B16_KO_sg2_rep2 Organism: Mus musculus Source name: B16 melanoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918370 Sample Accession: GSM4718317 ID: 304718317 6566. ATAC-seq_B16_KO_sg2_rep1 Organism: Mus musculus Source name: B16 melanoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918369 Sample Accession: GSM4718316 ID: 304718316 6567. ATAC-seq_B16_KO_sg1_rep2 Organism: Mus musculus Source name: B16 melanoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918368 Sample Accession: GSM4718315 ID: 304718315 6568. ATAC-seq_B16_KO_sg1_rep1 Organism: Mus musculus Source name: B16 melanoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918367 Sample Accession: GSM4718314 ID: 304718314 6569. ATAC-seq_B16_control_sg2_rep2 Organism: Mus musculus Source name: B16 melanoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918366 Sample Accession: GSM4718313 ID: 304718313 6570. ATAC-seq_B16_control_sg2_rep1 Organism: Mus musculus Source name: B16 melanoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918365 Sample Accession: GSM4718312 ID: 304718312 6571. ATAC-seq_B16_control_sg1_rep2 Organism: Mus musculus Source name: B16 melanoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918364 Sample Accession: GSM4718311 ID: 304718311 6572. ATAC-seq_B16_control_sg1_rep1 Organism: Mus musculus Source name: B16 melanoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918363 Sample Accession: GSM4718310 ID: 304718310 6573. ATAC-seq_LLC_KO_sg2_rep1 Organism: Mus musculus Source name: Lewis lung carcinoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918362 Sample Accession: GSM4718309 ID: 304718309 6574. ATAC-seq_LLC_KO_sg1_rep1 Organism: Mus musculus Source name: Lewis lung carcinoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918361 Sample Accession: GSM4718308 ID: 304718308 6575. ATAC-seq_LLC_control_sg2_rep1 Organism: Mus musculus Source name: Lewis lung carcinoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918360 Sample Accession: GSM4718307 ID: 304718307 6576. ATAC-seq_LLC_control_sg1_rep1 Organism: Mus musculus Source name: Lewis lung carcinoma - in vitro Platform: GPL19057 Series: GSE155972 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4718nnn/GSM4718306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8918359 Sample Accession: GSM4718306 ID: 304718306 6577. Sox2 overexpression/P53 knockout/p16 knockout mouse esophageal organoids ATAC-seq replicate2 Organism: Mus musculus Source name: Sox2 overexpression/P53 knockout/p16 knockout mouse esophageal organoids replicate2 Platform: GPL19057 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157941 Sample Accession: GSM5102958 ID: 305102958 6578. Sox2 overexpression/P53 knockout/p16 knockout mouse esophageal organoids ATAC-seq replicate1 Organism: Mus musculus Source name: Sox2 overexpression/P53 knockout/p16 knockout mouse esophageal organoids replicate1 Platform: GPL19057 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157940 Sample Accession: GSM5102957 ID: 305102957 6579. Sox2 overexpression mouse esophageal organoids ATAC-seq replicate2 Organism: Mus musculus Source name: Sox2 overexpression mouse esophageal organoids replicate2 Platform: GPL19057 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157939 Sample Accession: GSM5102956 ID: 305102956 6580. Sox2 overexpression mouse esophageal organoids ATAC-seq replicate1 Organism: Mus musculus Source name: Sox2 overexpression mouse esophageal organoids replicate1 Platform: GPL19057 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157938 Sample Accession: GSM5102955 ID: 305102955 6581. P53 knockout/p16 knockout mouse esophageal organoids ATAC-seq replicate2 Organism: Mus musculus Source name: P53 knockout/p16 knockout mouse esophageal organoids replicate2 Platform: GPL19057 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157937 Sample Accession: GSM5102954 ID: 305102954 6582. P53 knockout/p16 knockout mouse esophageal organoids ATAC-seq replicate1 Organism: Mus musculus Source name: P53 knockout/p16 knockout mouse esophageal organoids replicate1 Platform: GPL19057 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157936 Sample Accession: GSM5102953 ID: 305102953 6583. Normal mouse esophageal organoids ATAC-seq replicate2 Organism: Mus musculus Source name: Normal mouse esophageal organoids replicate2 Platform: GPL19057 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157935 Sample Accession: GSM5102952 ID: 305102952 6584. Normal mouse esophageal organoids ATAC-seq replicate1 Organism: Mus musculus Source name: Normal mouse esophageal organoids replicate1 Platform: GPL19057 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157934 Sample Accession: GSM5102951 ID: 305102951 6585. KYSE70 shKLF5 DOX(+) ATAC-seq replicate2 Organism: Homo sapiens Source name: KYSE70 KLF5 knockdown ATAC-seq replicate2 Platform: GPL18573 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157967 Sample Accession: GSM5102984 ID: 305102984 6586. KYSE70 shKLF5 DOX(+) ATAC-seq replicate1 Organism: Homo sapiens Source name: KYSE70 KLF5 knockdown ATAC-seq replicate1 Platform: GPL18573 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157966 Sample Accession: GSM5102983 ID: 305102983 6587. KYSE70 shSOX2 DOX(+) ATAC-seq replicate2 Organism: Homo sapiens Source name: KYSE70 SOX2 knockdown ATAC-seq replicate2 Platform: GPL18573 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157965 Sample Accession: GSM5102982 ID: 305102982 6588. KYSE70 shSOX2 DOX(+) ATAC-seq replicate1 Organism: Homo sapiens Source name: KYSE70 SOX2 knockdown ATAC-seq replicate1 Platform: GPL18573 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157964 Sample Accession: GSM5102981 ID: 305102981 6589. KYSE70 shNT DOX(+) ATAC-seq replicate2 Organism: Homo sapiens Source name: KYSE70 shNT DOX(+) ATAC-seq replicate2 Platform: GPL18573 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157963 Sample Accession: GSM5102980 ID: 305102980 6590. KYSE70 shNT DOX(+) ATAC-seq replicate1 Organism: Homo sapiens Source name: KYSE70 shNT DOX(+) ATAC-seq replicate1 Platform: GPL18573 Series: GSE167366 GSE167367 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157962 Sample Accession: GSM5102979 ID: 305102979 6591. ATAC-seq_24hr_rep2 Organism: Mus musculus Source name: Naïve (CD44int/lo CD62Lhi) CD8+ T cells Platform: GPL13112 Series: GSE166482 GSE166486 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10061350 Sample Accession: GSM5072243 ID: 305072243 6592. ATAC-seq_24hr_rep1 Organism: Mus musculus Source name: Naïve (CD44int/lo CD62Lhi) CD8+ T cells Platform: GPL13112 Series: GSE166482 GSE166486 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10061349 Sample Accession: GSM5072242 ID: 305072242 6593. ATAC-seq_3hr_rep2 Organism: Mus musculus Source name: Naïve (CD44int/lo CD62Lhi) CD8+ T cells Platform: GPL13112 Series: GSE166482 GSE166486 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10061348 Sample Accession: GSM5072241 ID: 305072241 6594. ATAC-seq_3hr_rep1 Organism: Mus musculus Source name: Naïve (CD44int/lo CD62Lhi) CD8+ T cells Platform: GPL13112 Series: GSE166482 GSE166486 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10061347 Sample Accession: GSM5072240 ID: 305072240 6595. ATAC-seq_0hr_rep2 Organism: Mus musculus Source name: Naïve (CD44int/lo CD62Lhi) CD8+ T cells Platform: GPL13112 Series: GSE166482 GSE166486 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10061346 Sample Accession: GSM5072239 ID: 305072239 6596. ATAC-seq_0hr_rep1 Organism: Mus musculus Source name: Naïve (CD44int/lo CD62Lhi) CD8+ T cells Platform: GPL13112 Series: GSE166482 GSE166486 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10061345 Sample Accession: GSM5072238 ID: 305072238 6597. set1_fmn1 ATAC-seq Organism: Saccharomyces cerevisiae Source name: log phase Platform: GPL17342 Series: GSE168913 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10341717 Sample Accession: GSM5172253 ID: 305172253 6598. fmn1 ATAC-seq Organism: Saccharomyces cerevisiae Source name: log phase Platform: GPL17342 Series: GSE168913 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10341716 Sample Accession: GSM5172252 ID: 305172252 6599. set1 ATAC-seq Organism: Saccharomyces cerevisiae Source name: log phase Platform: GPL17342 Series: GSE168913 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10341715 Sample Accession: GSM5172251 ID: 305172251 6600. WT ATAC-seq Organism: Saccharomyces cerevisiae Source name: log phase Platform: GPL17342 Series: GSE168913 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10341714 Sample Accession: GSM5172250 ID: 305172250 6601. Endodermal cells treated with BMS 3 somites rep3 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348124 Sample Accession: GSM5172806 ID: 305172806 6602. Endodermal cells treated with BMS 3 somites rep2 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348123 Sample Accession: GSM5172805 ID: 305172805 6603. Endodermal cells treated with BMS 3 somites rep1 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348122 Sample Accession: GSM5172804 ID: 305172804 6604. Endodermal cells treated with RA 3 somites rep3 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348121 Sample Accession: GSM5172803 ID: 305172803 6605. Endodermal cells treated with RA 3 somites rep2 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348120 Sample Accession: GSM5172802 ID: 305172802 6606. Endodermal cells treated with RA 3 somites rep1 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348119 Sample Accession: GSM5172801 ID: 305172801 6607. Endodermal cells treated with DMSO 3 somites rep3 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348118 Sample Accession: GSM5172800 ID: 305172800 6608. Endodermal cells treated with DMSO 3 somites rep2 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348117 Sample Accession: GSM5172799 ID: 305172799 6609. Endodermal cells treated with DMSO 3 somites rep1 ATAC-seq Organism: Danio rerio Source name: Endodermal cells (sox17:GFP +) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348116 Sample Accession: GSM5172798 ID: 305172798 6610. Non endodermal cells 3 somites rep3 ATAC-seq Organism: Danio rerio Source name: Non endodermal cells (sox17:GFP -) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348115 Sample Accession: GSM5172797 ID: 305172797 6611. Non endodermal cells 3 somites rep2 ATAC-seq Organism: Danio rerio Source name: Non endodermal cells (sox17:GFP -) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348114 Sample Accession: GSM5172796 ID: 305172796 6612. Non endodermal cells 3 somites rep1 ATAC-seq Organism: Danio rerio Source name: Non endodermal cells (sox17:GFP -) Platform: GPL20828 Series: GSE168960 GSE168969 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5172nnn/GSM5172795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10348113 Sample Accession: GSM5172795 ID: 305172795 6613. ATAC-seq_THP1_PMA_IRF1 KO_LPS_6hr Organism: Homo sapiens Source name: THP-1 cells +PMA Platform: GPL21697 Series: GSE147308 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963350 Sample Accession: GSM4425569 ID: 304425569 6614. ATAC-seq_THP1_PMA_IRF1 KO_LPS_3hr Organism: Homo sapiens Source name: THP-1 cells +PMA Platform: GPL21697 Series: GSE147308 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963349 Sample Accession: GSM4425568 ID: 304425568 6615. ATAC-seq_THP1_PMA_IRF1 KO_LPS_1hr Organism: Homo sapiens Source name: THP-1 cells +PMA Platform: GPL21697 Series: GSE147308 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963348 Sample Accession: GSM4425567 ID: 304425567 6616. ATAC-seq_THP1_PMA_IRF1 KO_unstimulated Organism: Homo sapiens Source name: THP-1 cells +PMA Platform: GPL21697 Series: GSE147308 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963347 Sample Accession: GSM4425566 ID: 304425566 6617. ATAC-seq_THP1_PMA_ctrl_LPS_6hr Organism: Homo sapiens Source name: THP-1 cells +PMA Platform: GPL21697 Series: GSE147308 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963346 Sample Accession: GSM4425565 ID: 304425565 6618. ATAC-seq_THP1_PMA_ctrl_LPS_3hr Organism: Homo sapiens Source name: THP-1 cells +PMA Platform: GPL21697 Series: GSE147308 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963345 Sample Accession: GSM4425564 ID: 304425564 6619. ATAC-seq_THP1_PMA_ctrl_LPS_1hr Organism: Homo sapiens Source name: THP-1 cells +PMA Platform: GPL21697 Series: GSE147308 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963344 Sample Accession: GSM4425563 ID: 304425563 6620. ATAC-seq_THP1_PMA_ctrl_unstimulated Organism: Homo sapiens Source name: THP-1 cells +PMA Platform: GPL21697 Series: GSE147308 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963343 Sample Accession: GSM4425562 ID: 304425562 6621. ATAC-seq_D6_MDMs_LPS_18h Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147307 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963341 Sample Accession: GSM4425561 ID: 304425561 6622. ATAC-seq_D6_MDMs_LPS_6h Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147307 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963340 Sample Accession: GSM4425560 ID: 304425560 6623. ATAC-seq_D6_MDMs_LPS_1h Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147307 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963339 Sample Accession: GSM4425559 ID: 304425559 6624. ATAC-seq_D6_MDMs_unstimulated Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147307 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963338 Sample Accession: GSM4425558 ID: 304425558 6625. ATAC-seq_D6_mono_LPS_18h Organism: Homo sapiens Source name: Human monocytes Platform: GPL21697 Series: GSE147307 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963337 Sample Accession: GSM4425557 ID: 304425557 6626. ATAC-seq_D6_mono_LPS_6h Organism: Homo sapiens Source name: Human monocytes Platform: GPL21697 Series: GSE147307 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425556/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963336 Sample Accession: GSM4425556 ID: 304425556 6627. ATAC-seq_D6_mono_LPS_1h Organism: Homo sapiens Source name: Human monocytes Platform: GPL21697 Series: GSE147307 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963335 Sample Accession: GSM4425555 ID: 304425555 6628. ATAC-seq_D6_mono_unstimulated Organism: Homo sapiens Source name: Human monocytes Platform: GPL21697 Series: GSE147307 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963334 Sample Accession: GSM4425554 ID: 304425554 6629. ATAC-seq_MDDCs_7day Organism: Homo sapiens Source name: Human monocyte-derived dendritic cells Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963331 Sample Accession: GSM4425553 ID: 304425553 6630. ATAC-seq_MDDCs_6day Organism: Homo sapiens Source name: Human monocyte-derived dendritic cells Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963330 Sample Accession: GSM4425552 ID: 304425552 6631. ATAC-seq_MDDCs_5day Organism: Homo sapiens Source name: Human monocyte-derived dendritic cells Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963329 Sample Accession: GSM4425551 ID: 304425551 6632. ATAC-seq_MDDCs_4day Organism: Homo sapiens Source name: Human monocyte-derived dendritic cells Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963328 Sample Accession: GSM4425550 ID: 304425550 6633. ATAC-seq_MDDCs_3day Organism: Homo sapiens Source name: Human monocyte-derived dendritic cells Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963327 Sample Accession: GSM4425549 ID: 304425549 6634. ATAC-seq_MDDCs_2day Organism: Homo sapiens Source name: Human monocyte-derived dendritic cells Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963326 Sample Accession: GSM4425548 ID: 304425548 6635. ATAC-seq_MDDCs_1day Organism: Homo sapiens Source name: Human monocyte-derived dendritic cells Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963325 Sample Accession: GSM4425547 ID: 304425547 6636. ATAC-seq_MDDCs_4hours Organism: Homo sapiens Source name: Human monocyte-derived dendritic cells Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963324 Sample Accession: GSM4425546 ID: 304425546 6637. ATAC-seq_MDMs_7day Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963323 Sample Accession: GSM4425545 ID: 304425545 6638. ATAC-seq_MDMs_6day Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963322 Sample Accession: GSM4425544 ID: 304425544 6639. ATAC-seq_MDMs_5day Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963321 Sample Accession: GSM4425543 ID: 304425543 6640. ATAC-seq_MDMs_4day Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963320 Sample Accession: GSM4425542 ID: 304425542 6641. ATAC-seq_MDMs_3day Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963319 Sample Accession: GSM4425541 ID: 304425541 6642. ATAC-seq_MDMs_2day Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963318 Sample Accession: GSM4425540 ID: 304425540 6643. ATAC-seq_MDMs_1day Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963317 Sample Accession: GSM4425539 ID: 304425539 6644. ATAC-seq_MDMs_4hours Organism: Homo sapiens Source name: Human monocyte-derived macrophages Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963316 Sample Accession: GSM4425538 ID: 304425538 6645. ATAC-seq_mono Organism: Homo sapiens Source name: Human monocytes Platform: GPL21697 Series: GSE147306 GSE147314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4425nnn/GSM4425537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7963315 Sample Accession: GSM4425537 ID: 304425537 6646. DZC ATAC Seq Replicate2 Organism: Bos taurus Source name: bovine deep zone articular chondrocytes (DZC) Platform: GPL23055 Series: GSE132379 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3861nnn/GSM3861284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5985882 Sample Accession: GSM3861284 ID: 303861284 6647. DZC ATAC Seq Replicate1 Organism: Bos taurus Source name: bovine deep zone articular chondrocytes (DZC) Platform: GPL23055 Series: GSE132379 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3861nnn/GSM3861283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5985881 Sample Accession: GSM3861283 ID: 303861283 6648. SZC ATAC Seq Replicate2 Organism: Bos taurus Source name: bovine superficial zone articular chondrocytes (SZC) Platform: GPL23055 Series: GSE132379 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3861nnn/GSM3861282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5985880 Sample Accession: GSM3861282 ID: 303861282 6649. SZC ATAC Seq Replicate1 Organism: Bos taurus Source name: bovine superficial zone articular chondrocytes (SZC) Platform: GPL23055 Series: GSE132379 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3861nnn/GSM3861281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5985879 Sample Accession: GSM3861281 ID: 303861281 6650. Single Cell ATAC-seq scATAC_K562_TimeCourse_Day9 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337398 Sample Accession: GSM5171462 ID: 305171462 6651. Single Cell ATAC-seq scATAC_K562_TimeCourse_Day6 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337397 Sample Accession: GSM5171461 ID: 305171461 6652. Single Cell ATAC-seq scATAC_K562_TimeCourse_Day3 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337396 Sample Accession: GSM5171460 ID: 305171460 6653. Single Cell ATAC-seq scATAC_K562_TimeCourse_Day21 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337395 Sample Accession: GSM5171459 ID: 305171459 6654. Single Cell ATAC-seq scATAC_MCF7_LargeScreen_Rep4 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337394 Sample Accession: GSM5171458 ID: 305171458 6655. Single Cell ATAC-seq scATAC_MCF7_LargeScreen_Rep3 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337393 Sample Accession: GSM5171457 ID: 305171457 6656. Single Cell ATAC-seq scATAC_MCF7_LargeScreen_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337392 Sample Accession: GSM5171456 ID: 305171456 6657. Single Cell ATAC-seq scATAC_MCF7_LargeScreen_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337391 Sample Accession: GSM5171455 ID: 305171455 6658. Single Cell ATAC-seq scATAC_K562_Pilot_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337390 Sample Accession: GSM5171454 ID: 305171454 6659. Single Cell ATAC-seq scATAC_K562_LargeScreen_Rep6 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337389 Sample Accession: GSM5171453 ID: 305171453 6660. Single Cell ATAC-seq scATAC_K562_LargeScreen_Rep5 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337388 Sample Accession: GSM5171452 ID: 305171452 6661. Single Cell ATAC-seq scATAC_K562_LargeScreen_Rep4 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337387 Sample Accession: GSM5171451 ID: 305171451 6662. Single Cell ATAC-seq scATAC_K562_LargeScreen_Rep3 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337386 Sample Accession: GSM5171450 ID: 305171450 6663. Single Cell ATAC-seq scATAC_K562_LargeScreen_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171449/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337385 Sample Accession: GSM5171449 ID: 305171449 6664. Single Cell ATAC-seq scATAC_K562_LargeScreen_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337384 Sample Accession: GSM5171448 ID: 305171448 6665. Single Cell ATAC-seq scATAC_GM_LargeScreen_Rep4 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171447/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337383 Sample Accession: GSM5171447 ID: 305171447 6666. Single Cell ATAC-seq scATAC_GM_LargeScreen_Rep3 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337382 Sample Accession: GSM5171446 ID: 305171446 6667. Single Cell ATAC-seq scATAC_GM_LargeScreen_Rep2 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337381 Sample Accession: GSM5171445 ID: 305171445 6668. Single Cell ATAC-seq scATAC_GM_LargeScreen_Rep1 Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL21697 Series: GSE168851 FTP download: GEO (CSV, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5171nnn/GSM5171444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10337380 Sample Accession: GSM5171444 ID: 305171444 6669. ATAC-seq_P3 Lung CD45-depleted Organism: Mus musculus Source name: P3 Atac Platform: GPL17021 Series: GSE149563 FTP download: GEO (CSV, H5, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4504nnn/GSM4504968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8202419 Sample Accession: GSM4504968 ID: 304504968 6670. H1-hESC-R2 Organism: Homo sapiens Source name: H1-hESC Platform: GPL18573 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995820 Sample Accession: GSM5057563 ID: 305057563 6671. H1-hESC-R1 Organism: Homo sapiens Source name: H1-hESC Platform: GPL18573 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995819 Sample Accession: GSM5057562 ID: 305057562 6672. U54-HFFc6-NS-AT-R2-T1 Organism: Homo sapiens Source name: HFFc6 Platform: GPL20301 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995810 Sample Accession: GSM5057553 ID: 305057553 6673. U54-HFFc6-NS-AT-R2-T2 Organism: Homo sapiens Source name: HFFc6 Platform: GPL20301 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995809 Sample Accession: GSM5057552 ID: 305057552 6674. U54-HFFc6-NS-AT-R2-T3 Organism: Homo sapiens Source name: HFFc6 Platform: GPL20301 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995808 Sample Accession: GSM5057551 ID: 305057551 6675. U54-HFFc6-NS-AT-R2-T4 Organism: Homo sapiens Source name: HFFc6 Platform: GPL20301 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995807 Sample Accession: GSM5057550 ID: 305057550 6676. U54-HFFc6-NS-AT-R1-T1 Organism: Homo sapiens Source name: HFFc6 Platform: GPL20301 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995806 Sample Accession: GSM5057549 ID: 305057549 6677. U54-HFFc6-NS-AT-R1-T2 Organism: Homo sapiens Source name: HFFc6 Platform: GPL20301 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995805 Sample Accession: GSM5057548 ID: 305057548 6678. U54-HFFc6-NS-AT-R1-T3 Organism: Homo sapiens Source name: HFFc6 Platform: GPL20301 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995804 Sample Accession: GSM5057547 ID: 305057547 6679. U54-HFFc6-NS-AT-R1-T4 Organism: Homo sapiens Source name: HFFc6 Platform: GPL20301 Series: GSE163666 GSE165895 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9995803 Sample Accession: GSM5057546 ID: 305057546 6680. donor2 ILCs ATAC-Seq Organism: Homo sapiens Source name: human PBMCs Platform: GPL18573 Series: GSE168212 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5134nnn/GSM5134083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10235923 Sample Accession: GSM5134083 ID: 305134083 6681. donor2 CD56negNK cells ATAC-Seq Organism: Homo sapiens Source name: human PBMCs Platform: GPL18573 Series: GSE168212 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5134nnn/GSM5134082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10235922 Sample Accession: GSM5134082 ID: 305134082 6682. donor2 CD56dimNK cells ATAC-Seq Organism: Homo sapiens Source name: human PBMCs Platform: GPL18573 Series: GSE168212 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5134nnn/GSM5134081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10235921 Sample Accession: GSM5134081 ID: 305134081 6683. donor2 CD56hiNK cells ATAC-Seq Organism: Homo sapiens Source name: human PBMCs Platform: GPL18573 Series: GSE168212 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5134nnn/GSM5134080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10235920 Sample Accession: GSM5134080 ID: 305134080 6684. donor1 ILCs ATAC-Seq Organism: Homo sapiens Source name: human PBMCs Platform: GPL18573 Series: GSE168212 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5134nnn/GSM5134079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10235919 Sample Accession: GSM5134079 ID: 305134079 6685. donor1 CD56negNK cells ATAC-Seq Organism: Homo sapiens Source name: human PBMCs Platform: GPL18573 Series: GSE168212 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5134nnn/GSM5134078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10235918 Sample Accession: GSM5134078 ID: 305134078 6686. donor1 CD56dimNK cells ATAC-Seq Organism: Homo sapiens Source name: human PBMCs Platform: GPL18573 Series: GSE168212 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5134nnn/GSM5134077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10235917 Sample Accession: GSM5134077 ID: 305134077 6687. donor1 CD56hiNK cells ATAC-Seq Organism: Homo sapiens Source name: human PBMCs Platform: GPL18573 Series: GSE168212 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5134nnn/GSM5134076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10235916 Sample Accession: GSM5134076 ID: 305134076 6688. ATAC_TX1072_XO_d4_r2 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157227 Sample Accession: GSM5102638 ID: 305102638 6689. ATAC_TX1072_XO_d4_r1 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157226 Sample Accession: GSM5102637 ID: 305102637 6690. ATAC_TX1072_XO_d2_r2 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157225 Sample Accession: GSM5102636 ID: 305102636 6691. ATAC_TX1072_XO_d2_r1 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157224 Sample Accession: GSM5102635 ID: 305102635 6692. ATAC_TX1072_XO_d0_r2 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157223 Sample Accession: GSM5102634 ID: 305102634 6693. ATAC_TX1072_XO_d0_r1 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157222 Sample Accession: GSM5102633 ID: 305102633 6694. ATAC_TX1072_XXdXic_d4_r2 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157221 Sample Accession: GSM5102632 ID: 305102632 6695. ATAC_TX1072_XXdXic_d4_r1 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157220 Sample Accession: GSM5102631 ID: 305102631 6696. ATAC_TX1072_XXdXic_d2_r2 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157219 Sample Accession: GSM5102630 ID: 305102630 6697. ATAC_TX1072_XXdXic_d2_r1 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157218 Sample Accession: GSM5102629 ID: 305102629 6698. ATAC_TX1072_XXdXic_d0_r2 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157217 Sample Accession: GSM5102628 ID: 305102628 6699. ATAC_TX1072_XXdXic_d0_r1 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL21103 Series: GSE167350 GSE167358 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5102nnn/GSM5102627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10157216 Sample Accession: GSM5102627 ID: 305102627 6700. ATAC-Seq 1575 Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196784 Sample Accession: GSM5117466 ID: 305117466 6701. ATAC-Seq 1573 Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196783 Sample Accession: GSM5117465 ID: 305117465 6702. ATAC-Seq 1563 Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196782 Sample Accession: GSM5117464 ID: 305117464 6703. ATAC-Seq 1563-fresh Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196781 Sample Accession: GSM5117463 ID: 305117463 6704. ATAC-Seq 1562 Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196780 Sample Accession: GSM5117462 ID: 305117462 6705. ATAC-Seq 1562-fresh Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196779 Sample Accession: GSM5117461 ID: 305117461 6706. ATAC-Seq 1561 Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196778 Sample Accession: GSM5117460 ID: 305117460 6707. ATAC-Seq 1560-fresh Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196777 Sample Accession: GSM5117459 ID: 305117459 6708. ATAC-Seq 1557 Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196776 Sample Accession: GSM5117458 ID: 305117458 6709. ATAC-Seq 1557-fresh Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196775 Sample Accession: GSM5117457 ID: 305117457 6710. ATAC-Seq 1555 Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196774 Sample Accession: GSM5117456 ID: 305117456 6711. ATAC-Seq 1555-fresh Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196773 Sample Accession: GSM5117455 ID: 305117455 6712. ATAC-Seq 1539 Organism: Homo sapiens Source name: multiple myeloma patient bone marrow aspirates Platform: GPL20301 Series: GSE167967 GSE167969 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10196772 Sample Accession: GSM5117454 ID: 305117454 6713. MM047 ATAC-seq B Organism: Homo sapiens Source name: MM047 ATAC-seq Platform: GPL24676 Series: GSE159965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9350644 Sample Accession: GSM4851832 ID: 304851832 6714. MM047 ATAC-seq A Organism: Homo sapiens Source name: MM047 ATAC-seq Platform: GPL24676 Series: GSE159965 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4851nnn/GSM4851831/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9350643 Sample Accession: GSM4851831 ID: 304851831 6715. A375 ATAC-seq B Organism: Homo sapiens Source name: A375 ATAC-seq Platform: GPL24676 Series: GSE159965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9350642 Sample Accession: GSM4851830 ID: 304851830 6716. A375 ATAC-seq A Organism: Homo sapiens Source name: A375 ATAC-seq Platform: GPL24676 Series: GSE159965 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4851nnn/GSM4851829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9350641 Sample Accession: GSM4851829 ID: 304851829 6717. U937_stim_2-Tag-30_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867532 Sample Accession: GSM4706140 ID: 304706140 6718. U937_stim_1-Tag-30_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867531 Sample Accession: GSM4706139 ID: 304706139 6719. U937_ctrl_2-Tag-30_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867528 Sample Accession: GSM4706136 ID: 304706136 6720. U937_ctrl_1-Tag-30_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867527 Sample Accession: GSM4706135 ID: 304706135 6721. THP_pmaLPS_ATAC_17_96h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867524 Sample Accession: GSM4706132 ID: 304706132 6722. THP_pmaLPS_ATAC_15_72h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867521 Sample Accession: GSM4706129 ID: 304706129 6723. THP_pmaLPS_ATAC_7_6h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867518 Sample Accession: GSM4706126 ID: 304706126 6724. THP_pmaLPS_ATAC_14_48h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867515 Sample Accession: GSM4706123 ID: 304706123 6725. THP_pmaLPS_ATAC_13_48h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867514 Sample Accession: GSM4706122 ID: 304706122 6726. THP_pmaLPS_ATAC_6_2h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867511 Sample Accession: GSM4706119 ID: 304706119 6727. THP_pmaLPS_ATAC_5_2h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867510 Sample Accession: GSM4706118 ID: 304706118 6728. THP_pmaLPS_ATAC_12_24h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867507 Sample Accession: GSM4706115 ID: 304706115 6729. THP_pmaLPS_ATAC_11_24h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867506 Sample Accession: GSM4706114 ID: 304706114 6730. THP_pmaLPS_ATAC_4_1h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867503 Sample Accession: GSM4706111 ID: 304706111 6731. THP_pmaLPS_ATAC_9_12h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867500 Sample Accession: GSM4706108 ID: 304706108 6732. THP_pmaLPS_ATAC_10_12h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867499 Sample Accession: GSM4706107 ID: 304706107 6733. THP_pmaLPS_ATAC_20_120h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867496 Sample Accession: GSM4706104 ID: 304706104 6734. THP_pmaLPS_ATAC_19_120h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867495 Sample Accession: GSM4706103 ID: 304706103 6735. THP_pmaLPS_ATAC_2_0h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867492 Sample Accession: GSM4706100 ID: 304706100 6736. THP_pmaLPS_ATAC_1_0h_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867491 Sample Accession: GSM4706099 ID: 304706099 6737. THP_stim_2-Tag-30_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867488 Sample Accession: GSM4706096 ID: 304706096 6738. THP_stim_1-Tag-30_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867487 Sample Accession: GSM4706095 ID: 304706095 6739. THP1_ctrl_2-Tag-30_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867484 Sample Accession: GSM4706092 ID: 304706092 6740. THP1_ctrl_1-Tag-30_ATAC Organism: Homo sapiens Source name: monocytic cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867483 Sample Accession: GSM4706091 ID: 304706091 6741. Jurkat_stim_2-Tag-30_ATAC Organism: Homo sapiens Source name: T cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867481 Sample Accession: GSM4706089 ID: 304706089 6742. Jurkat_stim_1-Tag-30_ATAC Organism: Homo sapiens Source name: T cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706088/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867480 Sample Accession: GSM4706088 ID: 304706088 6743. Jurkat_ctrl_2-Tag-30_ATAC Organism: Homo sapiens Source name: T cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867477 Sample Accession: GSM4706085 ID: 304706085 6744. Jurkat_ctrl_1-Tag-30_ATAC Organism: Homo sapiens Source name: T cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867476 Sample Accession: GSM4706084 ID: 304706084 6745. BJAB_stim_2-Tag-30_ATAC Organism: Homo sapiens Source name: B cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867473 Sample Accession: GSM4706081 ID: 304706081 6746. BJAB_stim_1-Tag-30_ATAC Organism: Homo sapiens Source name: B cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867472 Sample Accession: GSM4706080 ID: 304706080 6747. BJAB_ctrl_2-Tag-30_ATAC Organism: Homo sapiens Source name: B cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867469 Sample Accession: GSM4706077 ID: 304706077 6748. BJAB_ctrl_1-Tag-30_ATAC Organism: Homo sapiens Source name: B cell line Platform: GPL16791 Series: GSE155555 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4706nnn/GSM4706076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8867468 Sample Accession: GSM4706076 ID: 304706076 6749. Vpr_SORT Organism: Homo sapiens Source name: Pooled Vpr target knockout library Platform: GPL22790 Series: GSE156630 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8983812 Sample Accession: GSM4735310 ID: 304735310 6750. Vpr_LIB Organism: Homo sapiens Source name: Pooled Vpr target knockout library Platform: GPL22790 Series: GSE156630 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8983811 Sample Accession: GSM4735309 ID: 304735309 6751. WTVprVLP Organism: Homo sapiens Source name: WT Jurkat + RAL + virus + Vpr VLP Platform: GPL24676 Series: GSE156630 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4735nnn/GSM4735314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8983810 Sample Accession: GSM4735314 ID: 304735314 6752. WTConVLP Organism: Homo sapiens Source name: WT Jurkat + RAL + virus + control VLP Platform: GPL24676 Series: GSE156630 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4735nnn/GSM4735313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8983809 Sample Accession: GSM4735313 ID: 304735313 6753. WTnoVLP Organism: Homo sapiens Source name: WT Jurkat + RAL + virus Platform: GPL24676 Series: GSE156630 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4735nnn/GSM4735312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8983808 Sample Accession: GSM4735312 ID: 304735312 6754. WTnovi Organism: Homo sapiens Source name: Uninfected WT Jurkat Platform: GPL24676 Series: GSE156630 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4735nnn/GSM4735311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8983807 Sample Accession: GSM4735311 ID: 304735311 6755. CdLS Patient764P [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289080 Sample Accession: GSM4523080 ID: 304523080 6756. CdLS Patient744P [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289079 Sample Accession: GSM4523079 ID: 304523079 6757. CdLS Patient380P [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289078 Sample Accession: GSM4523078 ID: 304523078 6758. healthy control Patient3011 [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289077 Sample Accession: GSM4523077 ID: 304523077 6759. healthy control Patient2308 [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289076 Sample Accession: GSM4523076 ID: 304523076 6760. healthy control Patient4715 [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289075 Sample Accession: GSM4523075 ID: 304523075 6761. CdLS Patient2082 [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289074 Sample Accession: GSM4523074 ID: 304523074 6762. healthy control Patient1739 [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523073/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289073 Sample Accession: GSM4523073 ID: 304523073 6763. healthy control Patient4788 [ATAC-seq] Organism: Homo sapiens Source name: cortical non-neuronal nuclei Platform: GPL16791 Series: GSE150079 GSE150130 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4523nnn/GSM4523072/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8289072 Sample Accession: GSM4523072 ID: 304523072 6764. ATAC-Seq splenic NK - MUT 29 Organism: Mus musculus Source name: splenic NK cells Platform: GPL24247 Series: GSE167549 GSE167552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5107nnn/GSM5107413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10170257 Sample Accession: GSM5107413 ID: 305107413 6765. ATAC-Seq splenic NK - MUT 28 Organism: Mus musculus Source name: splenic NK cells Platform: GPL24247 Series: GSE167549 GSE167552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5107nnn/GSM5107412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10170256 Sample Accession: GSM5107412 ID: 305107412 6766. ATAC-Seq splenic NK - MUT 27 Organism: Mus musculus Source name: splenic NK cells Platform: GPL24247 Series: GSE167549 GSE167552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5107nnn/GSM5107411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10170255 Sample Accession: GSM5107411 ID: 305107411 6767. ATAC-Seq splenic NK - MUT 26 Organism: Mus musculus Source name: splenic NK cells Platform: GPL24247 Series: GSE167549 GSE167552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5107nnn/GSM5107410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10170254 Sample Accession: GSM5107410 ID: 305107410 6768. ATAC-Seq splenic NK - WT 7 Organism: Mus musculus Source name: splenic NK cells Platform: GPL24247 Series: GSE167549 GSE167552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5107nnn/GSM5107409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10170253 Sample Accession: GSM5107409 ID: 305107409 6769. ATAC-Seq splenic NK - WT 6 Organism: Mus musculus Source name: splenic NK cells Platform: GPL24247 Series: GSE167549 GSE167552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5107nnn/GSM5107408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10170252 Sample Accession: GSM5107408 ID: 305107408 6770. ATAC-Seq splenic NK - WT 5 Organism: Mus musculus Source name: splenic NK cells Platform: GPL24247 Series: GSE167549 GSE167552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5107nnn/GSM5107407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10170251 Sample Accession: GSM5107407 ID: 305107407 6771. ATAC-Seq splenic NK - WT 4 Organism: Mus musculus Source name: splenic NK cells Platform: GPL24247 Series: GSE167549 GSE167552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5107nnn/GSM5107406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10170250 Sample Accession: GSM5107406 ID: 305107406 6772. HS_Rep2 93-11 ATAC-seq Organism: Oryza sativa Source name: 3-week-old seedling Platform: GPL24468 Series: GSE144564 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4290nnn/GSM4290977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7652847 Sample Accession: GSM4290977 ID: 304290977 6773. HS_Rep1 93-11 ATAC-seq Organism: Oryza sativa Source name: 3-week-old seedling Platform: GPL24468 Series: GSE144564 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4290nnn/GSM4290976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7652846 Sample Accession: GSM4290976 ID: 304290976 6774. Normal_Rep2 93-11 ATAC-seq Organism: Oryza sativa Source name: 3-week-old seedling Platform: GPL24468 Series: GSE144564 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4290nnn/GSM4290975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7652845 Sample Accession: GSM4290975 ID: 304290975 6775. Normal_Rep1 93-11 ATAC-seq Organism: Oryza sativa Source name: 3-week-old seedling Platform: GPL24468 Series: GSE144564 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4290nnn/GSM4290974/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7652844 Sample Accession: GSM4290974 ID: 304290974 6776. HS_Rep2 Nipponbare ATAC-seq Organism: Oryza sativa Source name: 3-week-old seedling Platform: GPL24468 Series: GSE144564 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4290nnn/GSM4290973/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7652843 Sample Accession: GSM4290973 ID: 304290973 6777. HS_Rep1 Nipponbare ATAC-seq Organism: Oryza sativa Source name: 3-week-old seedling Platform: GPL24468 Series: GSE144564 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4290nnn/GSM4290972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7652842 Sample Accession: GSM4290972 ID: 304290972 6778. Normal_Rep2 Nipponbare ATAC-seq Organism: Oryza sativa Source name: 3-week-old seedling Platform: GPL24468 Series: GSE144564 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4290nnn/GSM4290971/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7652841 Sample Accession: GSM4290971 ID: 304290971 6779. Normal_Rep1 Nipponbare ATAC-seq Organism: Oryza sativa Source name: 3-week-old seedling Platform: GPL24468 Series: GSE144564 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4290nnn/GSM4290970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7652840 Sample Accession: GSM4290970 ID: 304290970 6780. ATAC-seq_gata2b ko 4 Organism: Danio rerio Source name: unsorted whole kidney marrow cells Platform: GPL24995 Series: GSE151230 GSE151232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8401954 Sample Accession: GSM4568906 ID: 304568906 6781. ATAC-seq_gata2b ko3 Organism: Danio rerio Source name: unsorted whole kidney marrow cells Platform: GPL24995 Series: GSE151230 GSE151232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8401953 Sample Accession: GSM4568905 ID: 304568905 6782. ATAC-seq_gata2b ko 2 Organism: Danio rerio Source name: unsorted whole kidney marrow cells Platform: GPL24995 Series: GSE151230 GSE151232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8401952 Sample Accession: GSM4568904 ID: 304568904 6783. ATAC-seq_gata2b het 2 Organism: Danio rerio Source name: unsorted whole kidney marrow cells Platform: GPL24995 Series: GSE151230 GSE151232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8401951 Sample Accession: GSM4568903 ID: 304568903 6784. ATAC-seq_gata2b het 1 Organism: Danio rerio Source name: unsorted whole kidney marrow cells Platform: GPL24995 Series: GSE151230 GSE151232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8401950 Sample Accession: GSM4568902 ID: 304568902 6785. ATAC-seq_wildtype 4 Organism: Danio rerio Source name: unsorted whole kidney marrow cells Platform: GPL24995 Series: GSE151230 GSE151232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8401949 Sample Accession: GSM4568901 ID: 304568901 6786. ATAC-seq_wildtype 3 Organism: Danio rerio Source name: unsorted whole kidney marrow cells Platform: GPL24995 Series: GSE151230 GSE151232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8401948 Sample Accession: GSM4568900 ID: 304568900 6787. ATAC-seq_wildtype 2 Organism: Danio rerio Source name: unsorted whole kidney marrow cells Platform: GPL24995 Series: GSE151230 GSE151232 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8401947 Sample Accession: GSM4568899 ID: 304568899 6788. P14 Thy1.1 Thy1.2 Kdm6b KO_BR3 DNA Organism: Mus musculus Source name: P14 Thy1.1 Thy1.2 cells from d4 LCMV infected mice Platform: GPL24247 Series: GSE161842 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9534692 Sample Accession: GSM4915760 ID: 304915760 6789. P14 Thy1.1 Thy1.2 Kdm6b KO_BR2 DNA Organism: Mus musculus Source name: P14 Thy1.1 Thy1.2 cells from d4 LCMV infected mice Platform: GPL24247 Series: GSE161842 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9534691 Sample Accession: GSM4915759 ID: 304915759 6790. P14 Thy1.1 Thy1.2 Kdm6b KO_BR1 DNA Organism: Mus musculus Source name: P14 Thy1.1 Thy1.2 cells from d4 LCMV infected mice Platform: GPL24247 Series: GSE161842 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9534690 Sample Accession: GSM4915758 ID: 304915758 6791. P14 Thy1.1 WT_BR3 DNA Organism: Mus musculus Source name: P14 Thy1.1 cells from d4 LCMV infected mice Platform: GPL24247 Series: GSE161842 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9534689 Sample Accession: GSM4915757 ID: 304915757 6792. P14 Thy1.1 WT_BR2 DNA Organism: Mus musculus Source name: P14 Thy1.1 cells from d4 LCMV infected mice Platform: GPL24247 Series: GSE161842 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9534688 Sample Accession: GSM4915756 ID: 304915756 6793. P14 Thy1.1 WT_BR1 DNA Organism: Mus musculus Source name: P14 Thy1.1 cells from d4 LCMV infected mice Platform: GPL24247 Series: GSE161842 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9534687 Sample Accession: GSM4915755 ID: 304915755 6794. ATACT3 Organism: Homo sapiens Source name: Tumor tissue from patient 3 (ATAC-seq) Platform: GPL24676 Series: GSE167488 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10167199 Sample Accession: GSM5106085 ID: 305106085 6795. ATACT2 Organism: Homo sapiens Source name: Tumor tissue from patient 2 (ATAC-seq) Platform: GPL24676 Series: GSE167488 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10167198 Sample Accession: GSM5106084 ID: 305106084 6796. ATACT1 Organism: Homo sapiens Source name: Tumor tissue from patient 1 (ATAC-seq) Platform: GPL24676 Series: GSE167488 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10167197 Sample Accession: GSM5106083 ID: 305106083 6797. ATACN3 Organism: Homo sapiens Source name: Normal tissue from patient 3 (ATAC-seq) Platform: GPL24676 Series: GSE167488 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10167196 Sample Accession: GSM5106082 ID: 305106082 6798. ATACN2 Organism: Homo sapiens Source name: Normal tissue from patient 2 (ATAC-seq) Platform: GPL24676 Series: GSE167488 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10167195 Sample Accession: GSM5106081 ID: 305106081 6799. ATACN1 Organism: Homo sapiens Source name: Normal tissue from patient 1 (ATAC-seq) Platform: GPL24676 Series: GSE167488 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5106nnn/GSM5106080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10167194 Sample Accession: GSM5106080 ID: 305106080 6800. Cranial tissue, E9.5 KO (ATAC-seq) Organism: Mus musculus Source name: Cranial tissue Platform: GPL19057 Series: GSE167454 GSE167456 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5105nnn/GSM5105441/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10164788 Sample Accession: GSM5105441 ID: 305105441 6801. Cranial tissue, E9.5 WT (ATAC-seq) Organism: Mus musculus Source name: Cranial tissue Platform: GPL19057 Series: GSE167454 GSE167456 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5105nnn/GSM5105440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10164787 Sample Accession: GSM5105440 ID: 305105440 6802. OT-I ATAC-seq 60 min. unstimulated rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152772 Sample Accession: GSM5101140 ID: 305101140 6803. OT-I ATAC-seq 60 min. T4 peptide rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152771 Sample Accession: GSM5101139 ID: 305101139 6804. OT-I ATAC-seq 60 min. T4 peptide PRN-694 rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152770 Sample Accession: GSM5101138 ID: 305101138 6805. OT-I ATAC-seq 60 min. N4 peptide rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152769 Sample Accession: GSM5101137 ID: 305101137 6806. OT-I ATAC-seq 60 min. N4 peptide PRN-694 rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152768 Sample Accession: GSM5101136 ID: 305101136 6807. OT-I ATAC-seq 30 min. unstimulated rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152767 Sample Accession: GSM5101135 ID: 305101135 6808. OT-I ATAC-seq 30 min. T4 peptide rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152766 Sample Accession: GSM5101134 ID: 305101134 6809. OT-I ATAC-seq 30 min. T4 peptide PRN-694 rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152765 Sample Accession: GSM5101133 ID: 305101133 6810. OT-I ATAC-seq 30 min. N4 peptide rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152764 Sample Accession: GSM5101132 ID: 305101132 6811. OT-I ATAC-seq 30 min. N4 peptide PRN-694 rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152763 Sample Accession: GSM5101131 ID: 305101131 6812. OT-I ATAC-seq 120 min. unstimulated rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152762 Sample Accession: GSM5101130 ID: 305101130 6813. OT-I ATAC-seq 120 min. T4 peptide rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152761 Sample Accession: GSM5101129 ID: 305101129 6814. OT-I ATAC-seq 120 min. T4 peptide PRN-694 rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152760 Sample Accession: GSM5101128 ID: 305101128 6815. OT-I ATAC-seq 120 min. N4 peptide rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152759 Sample Accession: GSM5101127 ID: 305101127 6816. OT-I ATAC-seq 120 min. N4 peptide PRN-694 rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152758 Sample Accession: GSM5101126 ID: 305101126 6817. OT-I ATAC-seq 0 min. unstimulated rep2 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152757 Sample Accession: GSM5101125 ID: 305101125 6818. OT-I ATAC-seq 60 min. unstimulated rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152756 Sample Accession: GSM5101124 ID: 305101124 6819. OT-I ATAC-seq 60 min. T4 peptide rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152755 Sample Accession: GSM5101123 ID: 305101123 6820. OT-I ATAC-seq 60 min. T4 peptide PRN-694 rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152754 Sample Accession: GSM5101122 ID: 305101122 6821. OT-I ATAC-seq 60 min. N4 peptide rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152753 Sample Accession: GSM5101121 ID: 305101121 6822. OT-I ATAC-seq 60 min. N4 peptide PRN-694 rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152752 Sample Accession: GSM5101120 ID: 305101120 6823. OT-I ATAC-seq 30 min. unstimulated rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152751 Sample Accession: GSM5101119 ID: 305101119 6824. OT-I ATAC-seq 30 min. T4 peptide rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152750 Sample Accession: GSM5101118 ID: 305101118 6825. OT-I ATAC-seq 30 min. T4 peptide PRN-694 rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152749 Sample Accession: GSM5101117 ID: 305101117 6826. OT-I ATAC-seq 30 min. N4 peptide rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152748 Sample Accession: GSM5101116 ID: 305101116 6827. OT-I ATAC-seq 30 min. N4 peptide PRN-694 rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152747 Sample Accession: GSM5101115 ID: 305101115 6828. OT-I ATAC-seq 120 min. unstimulated rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152746 Sample Accession: GSM5101114 ID: 305101114 6829. OT-I ATAC-seq 120 min. T4 peptide rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152745 Sample Accession: GSM5101113 ID: 305101113 6830. OT-I ATAC-seq 120 min. T4 peptide PRN-694 rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152744 Sample Accession: GSM5101112 ID: 305101112 6831. OT-I ATAC-seq 120 min. N4 peptide rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152743 Sample Accession: GSM5101111 ID: 305101111 6832. OT-I ATAC-seq 120 min. N4 peptide PRN-694 rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152742 Sample Accession: GSM5101110 ID: 305101110 6833. OT-I ATAC-seq 0 min. unstimulated rep1 Organism: Mus musculus Source name: CD8+ OT-I T cells Platform: GPL19057 Series: GSE167302 GSE167304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10152741 Sample Accession: GSM5101109 ID: 305101109 6834. Dek_cKO3 [ATAC-seq] Organism: Mus musculus Source name: Dek_cKO_HSCs Platform: GPL13112 Series: GSE166432 GSE166434 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058272 Sample Accession: GSM5071148 ID: 305071148 6835. Dek_cKO2 [ATAC-seq] Organism: Mus musculus Source name: Dek_cKO_HSCs Platform: GPL13112 Series: GSE166432 GSE166434 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058271 Sample Accession: GSM5071147 ID: 305071147 6836. Dek_cKO1 [ATAC-seq] Organism: Mus musculus Source name: Dek_cKO_HSCs Platform: GPL13112 Series: GSE166432 GSE166434 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058270 Sample Accession: GSM5071146 ID: 305071146 6837. Dek_fl3 [ATAC-seq] Organism: Mus musculus Source name: Dek_fl_HSCs Platform: GPL13112 Series: GSE166432 GSE166434 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058269 Sample Accession: GSM5071145 ID: 305071145 6838. Dek_fl2 [ATAC-seq] Organism: Mus musculus Source name: Dek_fl_HSCs Platform: GPL13112 Series: GSE166432 GSE166434 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058268 Sample Accession: GSM5071144 ID: 305071144 6839. Dek_fl1 [ATAC-seq] Organism: Mus musculus Source name: Dek_fl_HSCs Platform: GPL13112 Series: GSE166432 GSE166434 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5071nnn/GSM5071143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX10058267 Sample Accession: GSM5071143 ID: 305071143 6840. WT RAGKO ATAC-seq rep2 Organism: Mus musculus Source name: WT RAGKO ATAC-seq Platform: GPL17021 Series: GSE157603 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088981 Sample Accession: GSM4771514 ID: 304771514 6841. WT RAGKO ATAC-seq rep1 Organism: Mus musculus Source name: WT RAGKO ATAC-seq Platform: GPL17021 Series: GSE157603 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088980 Sample Accession: GSM4771513 ID: 304771513 6842. IL7Ra-/- RAGKO ATAC-seq rep2 Organism: Mus musculus Source name: IL7Ra-/- RAGKO ATAC-seq Platform: GPL17021 Series: GSE157603 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088977 Sample Accession: GSM4771510 ID: 304771510 6843. IL7Ra-/- RAGKO ATAC-seq rep1 Organism: Mus musculus Source name: IL7Ra-/- RAGKO ATAC-seq Platform: GPL17021 Series: GSE157603 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9088976 Sample Accession: GSM4771509 ID: 304771509 6844. d7klrg1hi_ATAC_FOXO1KO Organism: Mus musculus Source name: Virus-peptide-specfic CD8 T cell (P14) Platform: GPL13112 Series: GSE163723 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9719156 Sample Accession: GSM4984561 ID: 304984561 6845. d7klrg1hi_ATAC_WT Organism: Mus musculus Source name: Virus-peptide-specfic CD8 T cell (P14) Platform: GPL13112 Series: GSE163723 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9719155 Sample Accession: GSM4984560 ID: 304984560 6846. d7klrg1lo_ATAC_FOXO1KO Organism: Mus musculus Source name: Virus-peptide-specfic CD8 T cell (P14) Platform: GPL13112 Series: GSE163723 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9719154 Sample Accession: GSM4984559 ID: 304984559 6847. d7klrg1lo_ATAC_WT Organism: Mus musculus Source name: Virus-peptide-specfic CD8 T cell (P14) Platform: GPL13112 Series: GSE163723 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9719153 Sample Accession: GSM4984558 ID: 304984558 6848. Naïve_ATAC_FOXO1KO Organism: Mus musculus Source name: Virus-peptide-specfic CD8 T cell (P14) Platform: GPL13112 Series: GSE163723 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9719152 Sample Accession: GSM4984557 ID: 304984557 6849. Naïve_ATAC_WT Organism: Mus musculus Source name: Virus-peptide-specfic CD8 T cell (P14) Platform: GPL13112 Series: GSE163723 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9719151 Sample Accession: GSM4984556 ID: 304984556 6850. ATAC-seq_Yap-3 Organism: Mus musculus Source name: mouse skeletal muscle Platform: GPL24247 Series: GSE144137 GSE144138 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7623259 Sample Accession: GSM4282013 ID: 304282013 6851. ATAC-seq_Yap-2 Organism: Mus musculus Source name: mouse skeletal muscle Platform: GPL24247 Series: GSE144137 GSE144138 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7623258 Sample Accession: GSM4282012 ID: 304282012 6852. ATAC-seq_Yap-1 Organism: Mus musculus Source name: mouse skeletal muscle Platform: GPL24247 Series: GSE144137 GSE144138 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7623257 Sample Accession: GSM4282011 ID: 304282011 6853. ATAC-seq_LacZ-3 Organism: Mus musculus Source name: mouse skeletal muscle Platform: GPL24247 Series: GSE144137 GSE144138 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7623256 Sample Accession: GSM4282010 ID: 304282010 6854. ATAC-seq_LacZ-2 Organism: Mus musculus Source name: mouse skeletal muscle Platform: GPL24247 Series: GSE144137 GSE144138 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7623255 Sample Accession: GSM4282009 ID: 304282009 6855. ATAC-seq_LacZ-1 Organism: Mus musculus Source name: mouse skeletal muscle Platform: GPL24247 Series: GSE144137 GSE144138 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7623254 Sample Accession: GSM4282008 ID: 304282008 6856. p53 KO 5-FU 300um treated 24h rep2 [ATAC-seq] Organism: Homo sapiens Source name: p53 KO 5-FU 300um treated 24h Platform: GPL16791 Series: GSE157949 GSE158021 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9124342 Sample Accession: GSM4781641 ID: 304781641 6857. p53 KO 5-FU non treated rep2 [ATAC-seq] Organism: Homo sapiens Source name: p53 KO 5-FU non treated Platform: GPL16791 Series: GSE157949 GSE158021 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9124341 Sample Accession: GSM4781640 ID: 304781640 6858. p53 WT 5-FU 300um treated 24h rep2 [ATAC-seq] Organism: Homo sapiens Source name: p53 WT 5-FU 300um treated 24h Platform: GPL16791 Series: GSE157949 GSE158021 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9124340 Sample Accession: GSM4781639 ID: 304781639 6859. p53 WT 5-FU non treated rep2 [ATAC-seq] Organism: Homo sapiens Source name: p53 WT 5-FU non treated Platform: GPL16791 Series: GSE157949 GSE158021 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9124339 Sample Accession: GSM4781638 ID: 304781638 6860. p53 KO 5-FU 300um treated 24h rep1 [ATAC-seq] Organism: Homo sapiens Source name: p53 KO 5-FU 300um treated 24h Platform: GPL16791 Series: GSE157949 GSE158021 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4781nnn/GSM4781637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9124338 Sample Accession: GSM4781637 ID: 304781637 6861. p53 KO 5-FU non treated rep1 [ATAC-seq] Organism: Homo sapiens Source name: p53 KO 5-FU non treated Platform: GPL16791 Series: GSE157949 GSE158021 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4781nnn/GSM4781636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9124337 Sample Accession: GSM4781636 ID: 304781636 6862. p53 WT 5-FU 300um treated 24h rep1 [ATAC-seq] Organism: Homo sapiens Source name: p53 WT 5-FU 300um treated 24h Platform: GPL16791 Series: GSE157949 GSE158021 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4781nnn/GSM4781635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9124336 Sample Accession: GSM4781635 ID: 304781635 6863. p53 WT 5-FU non treated rep1 [ATAC-seq] Organism: Homo sapiens Source name: p53 WT 5-FU non treated Platform: GPL16791 Series: GSE157949 GSE158021 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4781nnn/GSM4781634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9124335 Sample Accession: GSM4781634 ID: 304781634 6864. E18 cortex single cell ATAC-seq Organism: Mus musculus Source name: mouse cortex Platform: GPL24247 Series: GSE161132 FTP download: GEO (CSV, H5, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4890nnn/GSM4890020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9463247 Sample Accession: GSM4890020 ID: 304890020 6865. Mutant_clone2_ATACseq Organism: Homo sapiens Source name: Mutant_clone2_ATACseq Platform: GPL20301 Series: GSE157310 GSE157311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4761nnn/GSM4761271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9055448 Sample Accession: GSM4761271 ID: 304761271 6866. Mutant_clone1_ATACseq Organism: Homo sapiens Source name: Mutant_clone1_ATACseq Platform: GPL20301 Series: GSE157310 GSE157311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4761nnn/GSM4761270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9055447 Sample Accession: GSM4761270 ID: 304761270 6867. HUDEP2_ATACseq_rep3 Organism: Homo sapiens Source name: HUDEP2_ATACseq_rep3 Platform: GPL20301 Series: GSE157310 GSE157311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4761nnn/GSM4761269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9055446 Sample Accession: GSM4761269 ID: 304761269 6868. HUDEP2_ATACseq_rep2 Organism: Homo sapiens Source name: HUDEP2_ATACseq_rep2 Platform: GPL20301 Series: GSE157310 GSE157311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4761nnn/GSM4761268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9055445 Sample Accession: GSM4761268 ID: 304761268 6869. HUDEP2_ATACseq_rep1 Organism: Homo sapiens Source name: HUDEP2_ATACseq_rep1 Platform: GPL20301 Series: GSE157310 GSE157311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4761nnn/GSM4761267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9055444 Sample Accession: GSM4761267 ID: 304761267 6870. HUDEP1_ATACseq_rep3 Organism: Homo sapiens Source name: HUDEP1_ATACseq_rep3 Platform: GPL20301 Series: GSE157310 GSE157311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4761nnn/GSM4761266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9055443 Sample Accession: GSM4761266 ID: 304761266 6871. HUDEP1_ATACseq_rep2 Organism: Homo sapiens Source name: HUDEP1_ATACseq_rep2 Platform: GPL20301 Series: GSE157310 GSE157311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4761nnn/GSM4761265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9055442 Sample Accession: GSM4761265 ID: 304761265 6872. HUDEP1_ATACseq_rep1 Organism: Homo sapiens Source name: HUDEP1_ATACseq_rep1 Platform: GPL20301 Series: GSE157310 GSE157311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4761nnn/GSM4761264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9055441 Sample Accession: GSM4761264 ID: 304761264 6873. ATAC-seq Mouse HS2HS3 fetal liver cells replicate 3 Organism: Mus musculus Source name: Differentiated CD117+ mouse fetal liver erythroid cells Platform: GPL19057 Series: GSE138357 GSE138359 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6942055 Sample Accession: GSM4105977 ID: 304105977 6874. ATAC-seq Mouse HS2HS3 fetal liver cells replicate 2 Organism: Mus musculus Source name: Differentiated CD117+ mouse fetal liver erythroid cells Platform: GPL19057 Series: GSE138357 GSE138359 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6942054 Sample Accession: GSM4105976 ID: 304105976 6875. ATAC-seq Mouse HS2HS3 fetal liver cells replicate 1 Organism: Mus musculus Source name: Differentiated CD117+ mouse fetal liver erythroid cells Platform: GPL19057 Series: GSE138357 GSE138359 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6942053 Sample Accession: GSM4105975 ID: 304105975 6876. ATAC-seq Mouse Wildtype fetal liver cells replicate 3 Organism: Mus musculus Source name: Differentiated CD117+ mouse fetal liver erythroid cells Platform: GPL19057 Series: GSE138357 GSE138359 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6942052 Sample Accession: GSM4105974 ID: 304105974 6877. ATAC-seq Mouse Wildtype fetal liver cells replicate 2 Organism: Mus musculus Source name: Differentiated CD117+ mouse fetal liver erythroid cells Platform: GPL19057 Series: GSE138357 GSE138359 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6942051 Sample Accession: GSM4105973 ID: 304105973 6878. ATAC-seq Mouse Wildtype fetal liver cells replicate 1 Organism: Mus musculus Source name: Differentiated CD117+ mouse fetal liver erythroid cells Platform: GPL19057 Series: GSE138357 GSE138359 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6942050 Sample Accession: GSM4105972 ID: 304105972 6879. LSECs, FFC_4 (ATAC-seq) Organism: Mus musculus Source name: Liver sinusodial endothelial cells Platform: GPL21103 Series: GSE164008 GSE164085 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4994nnn/GSM4994798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9751838 Sample Accession: GSM4994798 ID: 304994798 6880. LSECs, FFC_3 (ATAC-seq) Organism: Mus musculus Source name: Liver sinusodial endothelial cells Platform: GPL21103 Series: GSE164008 GSE164085 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4994nnn/GSM4994797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9751837 Sample Accession: GSM4994797 ID: 304994797 6881. LSECs, FFC_2 (ATAC-seq) Organism: Mus musculus Source name: Liver sinusodial endothelial cells Platform: GPL21103 Series: GSE164008 GSE164085 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4994nnn/GSM4994796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9751836 Sample Accession: GSM4994796 ID: 304994796 6882. LSECs, FFC_1 (ATAC-seq) Organism: Mus musculus Source name: Liver sinusodial endothelial cells Platform: GPL21103 Series: GSE164008 GSE164085 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4994nnn/GSM4994795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9751835 Sample Accession: GSM4994795 ID: 304994795 6883. LSECs, Chow_4 (ATAC-seq) Organism: Mus musculus Source name: Liver sinusodial endothelial cells Platform: GPL21103 Series: GSE164008 GSE164085 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4994nnn/GSM4994794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9751834 Sample Accession: GSM4994794 ID: 304994794 6884. LSECs, Chow_3 (ATAC-seq) Organism: Mus musculus Source name: Liver sinusodial endothelial cells Platform: GPL21103 Series: GSE164008 GSE164085 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4994nnn/GSM4994793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9751833 Sample Accession: GSM4994793 ID: 304994793 6885. LSECs, Chow_2 (ATAC-seq) Organism: Mus musculus Source name: Liver sinusodial endothelial cells Platform: GPL21103 Series: GSE164008 GSE164085 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4994nnn/GSM4994792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9751832 Sample Accession: GSM4994792 ID: 304994792 6886. LSECs, Chow_1 (ATAC-seq) Organism: Mus musculus Source name: Liver sinusodial endothelial cells Platform: GPL21103 Series: GSE164008 GSE164085 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4994nnn/GSM4994791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9751831 Sample Accession: GSM4994791 ID: 304994791 6887. ATACseq_WT11 Organism: Homo sapiens Source name: Breast cancer cell line; adenocarcinoma derived Platform: GPL20795 Series: GSE132749 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3891nnn/GSM3891271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6071764 Sample Accession: GSM3891271 ID: 303891271 6888. ATACseq_WT6 Organism: Homo sapiens Source name: Breast cancer cell line; adenocarcinoma derived Platform: GPL20795 Series: GSE132749 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3891nnn/GSM3891270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6071763 Sample Accession: GSM3891270 ID: 303891270 6889. ATACseq_E76K6 Organism: Homo sapiens Source name: Breast cancer cell line; adenocarcinoma derived Platform: GPL20795 Series: GSE132749 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3891nnn/GSM3891269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6071762 Sample Accession: GSM3891269 ID: 303891269 6890. ATACseq_E76K1 Organism: Homo sapiens Source name: Breast cancer cell line; adenocarcinoma derived Platform: GPL20795 Series: GSE132749 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3891nnn/GSM3891268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6071761 Sample Accession: GSM3891268 ID: 303891268 6891. chondrocyte [S19] Organism: Mus musculus Source name: Col2a1+ScxGFP- FACS sorted forelimb from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636061 Sample Accession: GSM4285554 ID: 304285554 6892. chondrocyte [S2] Organism: Mus musculus Source name: Col2a1+ScxGFP- FACS sorted from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636060 Sample Accession: GSM4285553 ID: 304285553 6893. attachment [E7_TG] Organism: Mus musculus Source name: Scx+Sox9+ FACS sorted humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636059 Sample Accession: GSM4285552 ID: 304285552 6894. attachment [E5_TG] Organism: Mus musculus Source name: Scx+Sox9+ FACS sorted humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636058 Sample Accession: GSM4285551 ID: 304285551 6895. attachment [E4_TG] Organism: Mus musculus Source name: Scx+Sox9+ FACS sorted humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636057 Sample Accession: GSM4285550 ID: 304285550 6896. attachment [E3_TG] Organism: Mus musculus Source name: Scx+Sox9+ FACS sorted humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636056 Sample Accession: GSM4285549 ID: 304285549 6897. tenocyte [E7_GFP] Organism: Mus musculus Source name: Scx+ FACS sorted from humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636055 Sample Accession: GSM4285548 ID: 304285548 6898. tenocyte [E5_GFP] Organism: Mus musculus Source name: Scx+ FACS sorted from humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636054 Sample Accession: GSM4285547 ID: 304285547 6899. tenocyte [E4_GFP] Organism: Mus musculus Source name: Scx+ FACS sorted from humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636053 Sample Accession: GSM4285546 ID: 304285546 6900. tenocyte [E3_GFP] Organism: Mus musculus Source name: Scx+ FACS sorted from humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636052 Sample Accession: GSM4285545 ID: 304285545 6901. tenocyte [E1_GFP] Organism: Mus musculus Source name: Scx+ FACS sorted from humeral deltoid tuberosity and greater tuberosity from E13.5 forelimb Platform: GPL19057 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636051 Sample Accession: GSM4285544 ID: 304285544 6902. attachment [E2] Organism: Mus musculus Source name: Scx-Col2- LCM isolated attachment cells from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636050 Sample Accession: GSM4285543 ID: 304285543 6903. attachment [E1] Organism: Mus musculus Source name: Scx-Col2- LCM isolated attachment cells from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636049 Sample Accession: GSM4285542 ID: 304285542 6904. adjacent chondrocyte [D2] Organism: Mus musculus Source name: Col2a1+ LCM from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636048 Sample Accession: GSM4285541 ID: 304285541 6905. remote chondrocyte [C2] Organism: Mus musculus Source name: Col2a1+ LCM from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636047 Sample Accession: GSM4285540 ID: 304285540 6906. remote chondrocyte [C1] Organism: Mus musculus Source name: Col2a1+ LCM from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636046 Sample Accession: GSM4285539 ID: 304285539 6907. adjacent tenocyte [B2] Organism: Mus musculus Source name: Scx+ LCM from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636045 Sample Accession: GSM4285538 ID: 304285538 6908. adjacent tenocyte [B1] Organism: Mus musculus Source name: Scx+ LCM from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636044 Sample Accession: GSM4285537 ID: 304285537 6909. remote tenocyte [A2] Organism: Mus musculus Source name: Scx+ LCM from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636043 Sample Accession: GSM4285536 ID: 304285536 6910. remote tenocyte [A1] Organism: Mus musculus Source name: Scx+ LCM from prominent deltoid tuberosity and greater tuberosity of the humerus from E14.5 forelimb Platform: GPL17021 Series: GSE144306 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7636042 Sample Accession: GSM4285535 ID: 304285535 6911. CRISPR_GPS2_KO_ATAC_seq_rp3 Organism: Mus musculus Source name: RAW264.7 cells Platform: GPL21626 Series: GSE130383 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4848nnn/GSM4848642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9344942 Sample Accession: GSM4848642 ID: 304848642 6912. CRISPR_GPS2_KO_ATAC_seq_rp2 Organism: Mus musculus Source name: RAW264.7 cells Platform: GPL21626 Series: GSE130383 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4848nnn/GSM4848641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9344941 Sample Accession: GSM4848641 ID: 304848641 6913. CRISPR_GPS2_KO_ATAC_seq_rp1 Organism: Mus musculus Source name: RAW264.7 cells Platform: GPL21626 Series: GSE130383 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4848nnn/GSM4848640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9344940 Sample Accession: GSM4848640 ID: 304848640 6914. CRISPR_KO_Ctrl_ATAC_seq_rp3 Organism: Mus musculus Source name: RAW264.7 cells Platform: GPL21626 Series: GSE130383 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4848nnn/GSM4848639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9344939 Sample Accession: GSM4848639 ID: 304848639 6915. CRISPR_KO_Ctrl_ATAC_seq_rp2 Organism: Mus musculus Source name: RAW264.7 cells Platform: GPL21626 Series: GSE130383 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4848nnn/GSM4848638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9344938 Sample Accession: GSM4848638 ID: 304848638 6916. CRISPR_KO_Ctrl_ATAC_seq_rp1 Organism: Mus musculus Source name: RAW264.7 cells Platform: GPL21626 Series: GSE130383 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4848nnn/GSM4848637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9344937 Sample Accession: GSM4848637 ID: 304848637 6917. ATAC-seq in Neuron 14-17hrs embryo Rep2 Organism: Drosophila melanogaster Source name: Neuron 14-17hrs embryo Platform: GPL13304 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394948/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712927 Sample Accession: GSM3394948 ID: 303394948 6918. ATAC-seq in Neuron 14-17hrs embryo Rep1 Organism: Drosophila melanogaster Source name: Neuron 14-17hrs embryo Platform: GPL13304 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712926 Sample Accession: GSM3394947 ID: 303394947 6919. ATAC-seq in Muscle 14-17hrs embryo Rep2 Organism: Drosophila melanogaster Source name: Muscle 14-17hrs embryo Platform: GPL13304 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712925 Sample Accession: GSM3394946 ID: 303394946 6920. ATAC-seq in Muscle 14-17hrs embryo Rep1 Organism: Drosophila melanogaster Source name: Muscle 14-17hrs embryo Platform: GPL13304 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712924 Sample Accession: GSM3394945 ID: 303394945 6921. ATAC-seq in Epidermis 14-17hrs embryo Rep2 Organism: Drosophila melanogaster Source name: Epidermis 14-17hrs embryo Platform: GPL13304 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712923 Sample Accession: GSM3394944 ID: 303394944 6922. ATAC-seq in Epidermis 14-17hrs embryo Rep1 Organism: Drosophila melanogaster Source name: Epidermis 14-17hrs embryo Platform: GPL13304 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712922 Sample Accession: GSM3394943 ID: 303394943 6923. ATAC-seq in Trachea 14-17hrs embryo Rep2 Organism: Drosophila melanogaster Source name: Trachea 14-17hrs embryo Platform: GPL19132 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712931 Sample Accession: GSM3394952 ID: 303394952 6924. ATAC-seq in Trachea 14-17hrs embryo Rep1 Organism: Drosophila melanogaster Source name: Trachea 14-17hrs embryo Platform: GPL19132 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712930 Sample Accession: GSM3394951 ID: 303394951 6925. ATAC-seq in Gut 14-17hrs embryo Rep2 Organism: Drosophila melanogaster Source name: Gut 14-17hrs embryo Platform: GPL19132 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712929 Sample Accession: GSM3394950 ID: 303394950 6926. ATAC-seq in Gut 14-17hrs embryo Rep1 Organism: Drosophila melanogaster Source name: Gut 14-17hrs embryo Platform: GPL19132 Series: GSE120151 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712928 Sample Accession: GSM3394949 ID: 303394949 6927. ATAC-seq in 14-17hrs embryo Rep2 Organism: Drosophila melanogaster Source name: 14-17hrs embryo Platform: GPL19132 Series: GSE120150 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712921 Sample Accession: GSM3394942 ID: 303394942 6928. ATAC-seq in 14-17hrs embryo Rep1 Organism: Drosophila melanogaster Source name: 14-17hrs embryo Platform: GPL19132 Series: GSE120150 GSE120157 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3394nnn/GSM3394941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712920 Sample Accession: GSM3394941 ID: 303394941 6929. B cells 2 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336504 Sample Accession: GSM3591808 ID: 303591808 6930. B cells 1 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336503 Sample Accession: GSM3591807 ID: 303591807 6931. Activated CD8+ T cells 2 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336502 Sample Accession: GSM3591806 ID: 303591806 6932. Activated CD8+ T cells 1 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336501 Sample Accession: GSM3591805 ID: 303591805 6933. Activated CD4+ T cells 2 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336500 Sample Accession: GSM3591804 ID: 303591804 6934. Activated CD4+ T cells 1 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336499 Sample Accession: GSM3591803 ID: 303591803 6935. Naive CD8+ T cells 2 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336498 Sample Accession: GSM3591802 ID: 303591802 6936. Naive CD8+ T cells 1 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336497 Sample Accession: GSM3591801 ID: 303591801 6937. Naive CD4+ T cells 2 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336496 Sample Accession: GSM3591800 ID: 303591800 6938. Naive CD4+ T cells 1 ATAC-Seq Organism: Homo sapiens Source name: Peripheral blood Platform: GPL18573 Series: GSE126113 GSE126117 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3591nnn/GSM3591799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5336495 Sample Accession: GSM3591799 ID: 303591799 6939. ChIPseq-GRKO-GFP-GRmon_abGFP_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579755 Sample Accession: GSM2907273 ID: 302907273 6940. ChIPseq-GRKO-GFP-GRmon_abGFP_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579754 Sample Accession: GSM2907272 ID: 302907272 6941. ChIPseq-GRKO-GFP-GRmon_abGFP_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, non-treated, GFP ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579753 Sample Accession: GSM2907271 ID: 302907271 6942. ChIPseq-GRKO-GFP-GRmon_abGFP_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, non-treated, GFP ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579752 Sample Accession: GSM2907270 ID: 302907270 6943. ChIPseq-GRKO-GFP-GRdim_abSMARCA4_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, SMARCA4 ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579751 Sample Accession: GSM2907255 ID: 302907255 6944. ChIPseq-GRKO-GFP-GRdim_abSMARCA4_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, SMARCA4 ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579750 Sample Accession: GSM2907254 ID: 302907254 6945. ChIPseq-GRKO-GFP-GRdim_abH3K4me1_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579749 Sample Accession: GSM2907253 ID: 302907253 6946. ChIPseq-GRKO-GFP-GRdim_abH3K4me1_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579748 Sample Accession: GSM2907252 ID: 302907252 6947. ChIPseq-GRKO-GFP-GRdim_abH3K4me1_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579747 Sample Accession: GSM2907251 ID: 302907251 6948. ChIPseq-GRKO-GFP-GRdim_abH3K4me1_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579746 Sample Accession: GSM2907250 ID: 302907250 6949. ChIPseq-GRKO-GFP-GRdim_abH3K27ac_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579745 Sample Accession: GSM2907249 ID: 302907249 6950. ChIPseq-GRKO-GFP-GRdim_abH3K27ac_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579744 Sample Accession: GSM2907248 ID: 302907248 6951. ChIPseq-GRKO-GFP-GRdim_abH3K27ac_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579743 Sample Accession: GSM2907247 ID: 302907247 6952. ChIPseq-GRKO-GFP-GRdim_abH3K27ac_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579742 Sample Accession: GSM2907246 ID: 302907246 6953. ChIPseq-GRKO-GFP-GRdim_abGFP_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579741 Sample Accession: GSM2907245 ID: 302907245 6954. ChIPseq-GRKO-GFP-GRdim_abGFP_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579740 Sample Accession: GSM2907244 ID: 302907244 6955. ChIPseq-GRKO-GFP-GRdim_abGFP_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, GFP ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579739 Sample Accession: GSM2907243 ID: 302907243 6956. ChIPseq-GRKO-GFP-GRdim_abGFP_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, GFP ChIP Platform: GPL19057 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579738 Sample Accession: GSM2907242 ID: 302907242 6957. RNAseq-GRKO-GFP-GRdim_TNF+DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, TNF+Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882085 Sample Accession: GSM4088867 ID: 304088867 6958. RNAseq-GRKO-GFP-GRdim_TNF+DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, TNF+Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882084 Sample Accession: GSM4088866 ID: 304088866 6959. RNAseq-GRKO-GFP-GRdim_TNF_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, TNF-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882083 Sample Accession: GSM4088865 ID: 304088865 6960. RNAseq-GRKO-GFP-GRdim_TNF_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, TNF-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882082 Sample Accession: GSM4088864 ID: 304088864 6961. RNAseq-GRKO-GFP-GRdim_TNF_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, TNF-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088863/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882081 Sample Accession: GSM4088863 ID: 304088863 6962. RNAseq-GRKO-GFP-GRwt_TNF+DEX_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, TNF+Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088862/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882080 Sample Accession: GSM4088862 ID: 304088862 6963. RNAseq-GRKO-GFP-GRwt_TNF+DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, TNF+Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088861/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882079 Sample Accession: GSM4088861 ID: 304088861 6964. RNAseq-GRKO-GFP-GRwt_TNF+DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, TNF+Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882078 Sample Accession: GSM4088860 ID: 304088860 6965. RNAseq-GRKO-GFP-GRwt_TNF_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, TNF-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882077 Sample Accession: GSM4088859 ID: 304088859 6966. RNAseq-GRKO-GFP-GRwt_TNF_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, TNF-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882076 Sample Accession: GSM4088858 ID: 304088858 6967. RNAseq-GRKO-GFP-GRwt_TNF_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, TNF-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4088nnn/GSM4088857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6882075 Sample Accession: GSM4088857 ID: 304088857 6968. RNAseq-GRKO-GFP-GRmon_DEX_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579770 Sample Accession: GSM2907317 ID: 302907317 6969. RNAseq-GRKO-GFP-GRmon_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579769 Sample Accession: GSM2907316 ID: 302907316 6970. RNAseq-GRKO-GFP-GRmon_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579768 Sample Accession: GSM2907315 ID: 302907315 6971. RNAseq-GRKO-GFP-GRmon_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, non-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579767 Sample Accession: GSM2907314 ID: 302907314 6972. RNAseq-GRKO-GFP-GRmon_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T/I634A GFP-GRmon, non-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579766 Sample Accession: GSM2907313 ID: 302907313 6973. RNAseq-GRKO-GFP-GRdim_DEX_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579765 Sample Accession: GSM2907306 ID: 302907306 6974. RNAseq-GRKO-GFP-GRdim_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579764 Sample Accession: GSM2907305 ID: 302907305 6975. RNAseq-GRKO-GFP-GRdim_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579763 Sample Accession: GSM2907304 ID: 302907304 6976. RNAseq-GRKO-GFP-GRdim_NT_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579762 Sample Accession: GSM2907303 ID: 302907303 6977. RNAseq-GRKO-GFP-GRdim_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579761 Sample Accession: GSM2907302 ID: 302907302 6978. RNAseq-GRKO-GFP-GRdim_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, RNA Platform: GPL17021 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579760 Sample Accession: GSM2907301 ID: 302907301 6979. ATACseq-GRKO-GFP-GRdim_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, ATAC Platform: GPL21103 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579759 Sample Accession: GSM2907291 ID: 302907291 6980. ATACseq-GRKO-GFP-GRdim_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, Dex-treated, ATAC Platform: GPL21103 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579758 Sample Accession: GSM2907290 ID: 302907290 6981. ATACseq-GRKO-GFP-GRdim_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, ATAC Platform: GPL21103 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579757 Sample Accession: GSM2907289 ID: 302907289 6982. ATACseq-GRKO-GFP-GRdim_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated A465T GFP-GRdim, non-treated, ATAC Platform: GPL21103 Series: GSE117661 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4579756 Sample Accession: GSM2907288 ID: 302907288 6983. ATAC-seq_patient-812_time-D15_D11OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860491 Sample Accession: GSM5023646 ID: 305023646 6984. ATAC-seq_patient-812_time-D15_D7OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860490 Sample Accession: GSM5023645 ID: 305023645 6985. ATAC-seq_patient-812_time-D15_ON_Nivo Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860489 Sample Accession: GSM5023644 ID: 305023644 6986. ATAC-seq_patient-812_time-D15_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860488 Sample Accession: GSM5023643 ID: 305023643 6987. ATAC-seq_patient-812_time-D15_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860487 Sample Accession: GSM5023642 ID: 305023642 6988. ATAC-seq_patient-352_time-D15_D11OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860486 Sample Accession: GSM5023641 ID: 305023641 6989. ATAC-seq_patient-352_time-D15_D7OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860485 Sample Accession: GSM5023640 ID: 305023640 6990. ATAC-seq_patient-352_time-D15_ON_Nivo Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860484 Sample Accession: GSM5023639 ID: 305023639 6991. ATAC-seq_patient-352_time-D15_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860483 Sample Accession: GSM5023638 ID: 305023638 6992. ATAC-seq_patient-352_time-D15_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860482 Sample Accession: GSM5023637 ID: 305023637 6993. ATAC-seq_patient-176_time-D15_D11OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860481 Sample Accession: GSM5023636 ID: 305023636 6994. ATAC-seq_patient-176_time-D15_D7OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860480 Sample Accession: GSM5023635 ID: 305023635 6995. ATAC-seq_patient-176_time-D15_ON_Nivo Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860479 Sample Accession: GSM5023634 ID: 305023634 6996. ATAC-seq_patient-176_time-D15_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860478 Sample Accession: GSM5023633 ID: 305023633 6997. ATAC-seq_patient-176_time-D15_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860477 Sample Accession: GSM5023632 ID: 305023632 6998. ATAC-seq_patient-812_time-D11_D7OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860476 Sample Accession: GSM5023631 ID: 305023631 6999. ATAC-seq_patient-812_time-D11_ON_Nivo Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860475 Sample Accession: GSM5023630 ID: 305023630 7000. ATAC-seq_patient-812_time-D11_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860474 Sample Accession: GSM5023629 ID: 305023629 7001. ATAC-seq_patient-812_time-D11_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860473 Sample Accession: GSM5023628 ID: 305023628 7002. ATAC-seq_patient-352_time-D11_D7OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860472 Sample Accession: GSM5023627 ID: 305023627 7003. ATAC-seq_patient-352_time-D11_ON_Nivo Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860471 Sample Accession: GSM5023626 ID: 305023626 7004. ATAC-seq_patient-352_time-D11_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860470 Sample Accession: GSM5023625 ID: 305023625 7005. ATAC-seq_patient-352_time-D11_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860469 Sample Accession: GSM5023624 ID: 305023624 7006. ATAC-seq_patient-176_time-D11_D7OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860468 Sample Accession: GSM5023623 ID: 305023623 7007. ATAC-seq_patient-176_time-D11_ON_Nivo Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860467 Sample Accession: GSM5023622 ID: 305023622 7008. ATAC-seq_patient-176_time-D11_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860466 Sample Accession: GSM5023621 ID: 305023621 7009. ATAC-seq_patient-176_time-D11_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860465 Sample Accession: GSM5023620 ID: 305023620 7010. ATAC-seq_patient-812_time-D7_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860464 Sample Accession: GSM5023619 ID: 305023619 7011. ATAC-seq_patient-812_time-D7_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860463 Sample Accession: GSM5023618 ID: 305023618 7012. ATAC-seq_patient-352_time-D7_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860462 Sample Accession: GSM5023617 ID: 305023617 7013. ATAC-seq_patient-352_time-D7_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860461 Sample Accession: GSM5023616 ID: 305023616 7014. ATAC-seq_patient-176_time-D7_OFF Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860460 Sample Accession: GSM5023615 ID: 305023615 7015. ATAC-seq_patient-176_time-D7_ON Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860459 Sample Accession: GSM5023614 ID: 305023614 7016. ATAC-seq_patient-812_time-D0_naive Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860458 Sample Accession: GSM5023613 ID: 305023613 7017. ATAC-seq_patient-352_time-D0_naive Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860457 Sample Accession: GSM5023612 ID: 305023612 7018. ATAC-seq_patient-176_time-D0_naive Organism: Homo sapiens Source name: Cultured CAR-T cells Platform: GPL20301 Series: GSE164946 GSE164950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9860456 Sample Accession: GSM5023611 ID: 305023611 7019. ATAC-seq, day 21 of EBV infection, donor 2 Organism: Homo sapiens Source name: day 21 of EBV infection Platform: GPL18573 Series: GSE155345 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4699nnn/GSM4699555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8843457 Sample Accession: GSM4699555 ID: 304699555 7020. ATAC-seq, day 21 of EBV infection, donor 1 Organism: Homo sapiens Source name: day 21 of EBV infection Platform: GPL18573 Series: GSE155345 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4699nnn/GSM4699554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8843456 Sample Accession: GSM4699554 ID: 304699554 7021. ATAC-seq, day 7 of EBV infection, donor 2 Organism: Homo sapiens Source name: day 7 of EBV infection Platform: GPL18573 Series: GSE155345 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4699nnn/GSM4699553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8843455 Sample Accession: GSM4699553 ID: 304699553 7022. ATAC-seq, day 7 of EBV infection, donor 1 Organism: Homo sapiens Source name: day 7 of EBV infection Platform: GPL18573 Series: GSE155345 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4699nnn/GSM4699552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8843454 Sample Accession: GSM4699552 ID: 304699552 7023. ATAC-seq, day 2 of EBV infection, donor 2 Organism: Homo sapiens Source name: day 2 of EBV infection Platform: GPL18573 Series: GSE155345 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4699nnn/GSM4699551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8843453 Sample Accession: GSM4699551 ID: 304699551 7024. ATAC-seq, day 2 of EBV infection, donor 1 Organism: Homo sapiens Source name: day 2 of EBV infection Platform: GPL18573 Series: GSE155345 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4699nnn/GSM4699550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8843452 Sample Accession: GSM4699550 ID: 304699550 7025. ATAC-seq, day 0 of EBV infection, donor 2 Organism: Homo sapiens Source name: day 0 of EBV infection Platform: GPL18573 Series: GSE155345 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4699nnn/GSM4699549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8843451 Sample Accession: GSM4699549 ID: 304699549 7026. ATAC-seq, day 0 of EBV infection, donor 1 Organism: Homo sapiens Source name: day 0 of EBV infection Platform: GPL18573 Series: GSE155345 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4699nnn/GSM4699548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8843450 Sample Accession: GSM4699548 ID: 304699548 7027. ATAC_seq_Meristems_rep6 Organism: Solanum lycopersicum Source name: anantha inflorescences Platform: GPL20585 Series: GSE164297 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9785724 Sample Accession: GSM5006006 ID: 305006006 7028. ATAC_seq_Meristems_rep5 Organism: Solanum lycopersicum Source name: anantha inflorescences Platform: GPL20585 Series: GSE164297 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9785723 Sample Accession: GSM5006005 ID: 305006005 7029. ATAC_seq_Meristems_rep4 Organism: Solanum lycopersicum Source name: anantha inflorescences Platform: GPL20585 Series: GSE164297 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9785722 Sample Accession: GSM5006004 ID: 305006004 7030. ATAC_seq_Meristems_rep3 Organism: Solanum lycopersicum Source name: anantha inflorescences Platform: GPL20585 Series: GSE164297 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9785721 Sample Accession: GSM5006003 ID: 305006003 7031. ATAC_seq_Meristems_rep2 Organism: Solanum lycopersicum Source name: anantha inflorescences Platform: GPL20585 Series: GSE164297 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9785720 Sample Accession: GSM5006002 ID: 305006002 7032. ATAC_seq_Meristems_rep1 Organism: Solanum lycopersicum Source name: anantha inflorescences Platform: GPL20585 Series: GSE164297 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9785719 Sample Accession: GSM5006001 ID: 305006001 7033. middle-aged LT-HSC + IGF1 rep 2 Organism: Mus musculus Source name: bone marrow Platform: GPL19057 Series: GSE164609 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9823536 Sample Accession: GSM5014799 ID: 305014799 7034. middle-aged LT-HSC + IGF1 rep 1 Organism: Mus musculus Source name: bone marrow Platform: GPL19057 Series: GSE164609 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9823535 Sample Accession: GSM5014798 ID: 305014798 7035. middle-aged LT-HSC rep 2 Organism: Mus musculus Source name: bone marrow Platform: GPL19057 Series: GSE164609 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9823534 Sample Accession: GSM5014797 ID: 305014797 7036. middle-aged LT-HSC rep 1 Organism: Mus musculus Source name: bone marrow Platform: GPL19057 Series: GSE164609 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9823533 Sample Accession: GSM5014796 ID: 305014796 7037. ATAC_Mapk8-KO_S2 Organism: Mus musculus Source name: Whole skin Platform: GPL24247 Series: GSE164579 GSE164581 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5014nnn/GSM5014389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9822230 Sample Accession: GSM5014389 ID: 305014389 7038. ATAC_Mapk8-KO_S1 Organism: Mus musculus Source name: Whole skin Platform: GPL24247 Series: GSE164579 GSE164581 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5014nnn/GSM5014388/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9822229 Sample Accession: GSM5014388 ID: 305014388 7039. ATAC_WT_S2 Organism: Mus musculus Source name: Whole skin Platform: GPL24247 Series: GSE164579 GSE164581 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5014nnn/GSM5014387/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9822228 Sample Accession: GSM5014387 ID: 305014387 7040. ATAC_WT_S1 Organism: Mus musculus Source name: Whole skin Platform: GPL24247 Series: GSE164579 GSE164581 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM5014nnn/GSM5014386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9822227 Sample Accession: GSM5014386 ID: 305014386 7041. Fgf13cko rep2 [ATAC-seq] Organism: Mus musculus Source name: Hippocampus Platform: GPL21273 Series: GSE143172 GSE143178 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4251nnn/GSM4251636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7506016 Sample Accession: GSM4251636 ID: 304251636 7042. Fgf13cko rep1 [ATAC-seq] Organism: Mus musculus Source name: Hippocampus Platform: GPL21273 Series: GSE143172 GSE143178 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4251nnn/GSM4251635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7506015 Sample Accession: GSM4251635 ID: 304251635 7043. CTRL rep2 [ATAC-seq] Organism: Mus musculus Source name: Hippocampus Platform: GPL21273 Series: GSE143172 GSE143178 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4251nnn/GSM4251634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7506014 Sample Accession: GSM4251634 ID: 304251634 7044. CTRL rep1 [ATAC-seq] Organism: Mus musculus Source name: Hippocampus Platform: GPL21273 Series: GSE143172 GSE143178 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4251nnn/GSM4251633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7506013 Sample Accession: GSM4251633 ID: 304251633 7045. HT1376_ATACSeq_2 Organism: Homo sapiens Source name: Cell Platform: GPL9052 Series: GSE148079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8055087 Sample Accession: GSM4453790 ID: 304453790 7046. HT1376_ATACSeq_1 Organism: Homo sapiens Source name: Cell Platform: GPL9052 Series: GSE148079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8055086 Sample Accession: GSM4453789 ID: 304453789 7047. SCABER_ATACSeq_2 Organism: Homo sapiens Source name: Cell Platform: GPL9052 Series: GSE148079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8055085 Sample Accession: GSM4453788 ID: 304453788 7048. SCABER_ATACSeq_1 Organism: Homo sapiens Source name: Cell Platform: GPL9052 Series: GSE148079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8055084 Sample Accession: GSM4453787 ID: 304453787 7049. RT4_ATACSeq_2 Organism: Homo sapiens Source name: Cell Platform: GPL9052 Series: GSE148079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8055083 Sample Accession: GSM4453786 ID: 304453786 7050. RT4_ATACSeq_1 Organism: Homo sapiens Source name: Cell Platform: GPL9052 Series: GSE148079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8055082 Sample Accession: GSM4453785 ID: 304453785 7051. Arabidopsis thaliana Tsu-0 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770868 Sample Accession: GSM4998573 ID: 304998573 7052. Arabidopsis thaliana Tsu-0 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770867 Sample Accession: GSM4998572 ID: 304998572 7053. Arabidopsis thaliana Tsu-0 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770866 Sample Accession: GSM4998571 ID: 304998571 7054. Arabidopsis thaliana Tsu-0 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770865 Sample Accession: GSM4998570 ID: 304998570 7055. Arabidopsis thaliana Per-1 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770864 Sample Accession: GSM4998569 ID: 304998569 7056. Arabidopsis thaliana Per-1 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770863 Sample Accession: GSM4998568 ID: 304998568 7057. Arabidopsis thaliana Per-1 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770862 Sample Accession: GSM4998567 ID: 304998567 7058. Arabidopsis thaliana Per-1 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770861 Sample Accession: GSM4998566 ID: 304998566 7059. Arabidopsis thaliana old rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770860 Sample Accession: GSM4998565 ID: 304998565 7060. Arabidopsis thaliana old rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770859 Sample Accession: GSM4998564 ID: 304998564 7061. Arabidopsis thaliana old rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770858 Sample Accession: GSM4998563 ID: 304998563 7062. Arabidopsis thaliana old rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770857 Sample Accession: GSM4998562 ID: 304998562 7063. Arabidopsis thaliana Og rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770856 Sample Accession: GSM4998561 ID: 304998561 7064. Arabidopsis thaliana Og rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770855 Sample Accession: GSM4998560 ID: 304998560 7065. Arabidopsis thaliana Og rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770854 Sample Accession: GSM4998559 ID: 304998559 7066. Arabidopsis thaliana Og rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770853 Sample Accession: GSM4998558 ID: 304998558 7067. Arabidopsis thaliana Nw rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770852 Sample Accession: GSM4998557 ID: 304998557 7068. Arabidopsis thaliana Nw rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998556/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770851 Sample Accession: GSM4998556 ID: 304998556 7069. Arabidopsis thaliana Nw rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770850 Sample Accession: GSM4998555 ID: 304998555 7070. Arabidopsis thaliana Nw rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770849 Sample Accession: GSM4998554 ID: 304998554 7071. Arabidopsis thaliana No rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770848 Sample Accession: GSM4998553 ID: 304998553 7072. Arabidopsis thaliana No rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770847 Sample Accession: GSM4998552 ID: 304998552 7073. Arabidopsis thaliana No rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770846 Sample Accession: GSM4998551 ID: 304998551 7074. Arabidopsis thaliana No rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770845 Sample Accession: GSM4998550 ID: 304998550 7075. Arabidopsis thaliana Mt rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770840 Sample Accession: GSM4998545 ID: 304998545 7076. Arabidopsis thaliana Mt rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770839 Sample Accession: GSM4998544 ID: 304998544 7077. Arabidopsis thaliana Mt rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770838 Sample Accession: GSM4998543 ID: 304998543 7078. Arabidopsis thaliana Mt rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770837 Sample Accession: GSM4998542 ID: 304998542 7079. Arabidopsis thaliana Ler-0 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770836 Sample Accession: GSM4998541 ID: 304998541 7080. Arabidopsis thaliana Ler-0 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770835 Sample Accession: GSM4998540 ID: 304998540 7081. Arabidopsis thaliana Ler-0 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770834 Sample Accession: GSM4998539 ID: 304998539 7082. Arabidopsis thaliana Ler-0 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770833 Sample Accession: GSM4998538 ID: 304998538 7083. Arabidopsis thaliana Kn rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770832 Sample Accession: GSM4998537 ID: 304998537 7084. Arabidopsis thaliana Kn rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770831 Sample Accession: GSM4998536 ID: 304998536 7085. Arabidopsis thaliana Kn rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770830 Sample Accession: GSM4998535 ID: 304998535 7086. Arabidopsis thaliana Kn rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770829 Sample Accession: GSM4998534 ID: 304998534 7087. Arabidopsis thaliana Kil rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770828 Sample Accession: GSM4998533 ID: 304998533 7088. Arabidopsis thaliana Kil rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770827 Sample Accession: GSM4998532 ID: 304998532 7089. Arabidopsis thaliana Kil rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770826 Sample Accession: GSM4998531 ID: 304998531 7090. Arabidopsis thaliana Kil rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770825 Sample Accession: GSM4998530 ID: 304998530 7091. Arabidopsis thaliana Jm rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770824 Sample Accession: GSM4998529 ID: 304998529 7092. Arabidopsis thaliana Jm rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770823 Sample Accession: GSM4998528 ID: 304998528 7093. Arabidopsis thaliana Jm rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770822 Sample Accession: GSM4998527 ID: 304998527 7094. Arabidopsis thaliana Jm rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770821 Sample Accession: GSM4998526 ID: 304998526 7095. Arabidopsis thaliana Is rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770820 Sample Accession: GSM4998525 ID: 304998525 7096. Arabidopsis thaliana Is rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770819 Sample Accession: GSM4998524 ID: 304998524 7097. Arabidopsis thaliana Is rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998523/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770818 Sample Accession: GSM4998523 ID: 304998523 7098. Arabidopsis thaliana Is rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770817 Sample Accession: GSM4998522 ID: 304998522 7099. Arabidopsis thaliana Hi rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770816 Sample Accession: GSM4998521 ID: 304998521 7100. Arabidopsis thaliana Hi rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770815 Sample Accession: GSM4998520 ID: 304998520 7101. Arabidopsis thaliana Hi rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998519/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770814 Sample Accession: GSM4998519 ID: 304998519 7102. Arabidopsis thaliana Hi rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770813 Sample Accession: GSM4998518 ID: 304998518 7103. Arabidopsis thaliana Gr-1 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770812 Sample Accession: GSM4998517 ID: 304998517 7104. Arabidopsis thaliana Gr-1 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998516/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770811 Sample Accession: GSM4998516 ID: 304998516 7105. Arabidopsis thaliana Gr-1 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770810 Sample Accession: GSM4998515 ID: 304998515 7106. Arabidopsis thaliana Gr-1 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770809 Sample Accession: GSM4998514 ID: 304998514 7107. Arabidopsis thaliana Gd-1 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998513/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770808 Sample Accession: GSM4998513 ID: 304998513 7108. Arabidopsis thaliana Gd-1 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770807 Sample Accession: GSM4998512 ID: 304998512 7109. Arabidopsis thaliana Gd-1 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770806 Sample Accession: GSM4998511 ID: 304998511 7110. Arabidopsis thaliana Gd-1 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770805 Sample Accession: GSM4998510 ID: 304998510 7111. Arabidopsis thaliana Est rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998509/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770804 Sample Accession: GSM4998509 ID: 304998509 7112. Arabidopsis thaliana Est rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998508/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770803 Sample Accession: GSM4998508 ID: 304998508 7113. Arabidopsis thaliana Est rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770802 Sample Accession: GSM4998507 ID: 304998507 7114. Arabidopsis thaliana Est rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998506/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770801 Sample Accession: GSM4998506 ID: 304998506 7115. Arabidopsis thaliana En-2 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770800 Sample Accession: GSM4998505 ID: 304998505 7116. Arabidopsis thaliana En-2 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998504/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770799 Sample Accession: GSM4998504 ID: 304998504 7117. Arabidopsis thaliana En-2 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770798 Sample Accession: GSM4998503 ID: 304998503 7118. Arabidopsis thaliana En-2 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998502/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770797 Sample Accession: GSM4998502 ID: 304998502 7119. Arabidopsis thaliana Cvi-0 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998501/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770796 Sample Accession: GSM4998501 ID: 304998501 7120. Arabidopsis thaliana Cvi-0 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770795 Sample Accession: GSM4998500 ID: 304998500 7121. Arabidopsis thaliana Cvi-0 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770794 Sample Accession: GSM4998499 ID: 304998499 7122. Arabidopsis thaliana Cvi-0 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770793 Sample Accession: GSM4998498 ID: 304998498 7123. Arabidopsis thaliana Col-0 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770792 Sample Accession: GSM4998497 ID: 304998497 7124. Arabidopsis thaliana Col-0 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770791 Sample Accession: GSM4998496 ID: 304998496 7125. Arabidopsis thaliana Col-0 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770790 Sample Accession: GSM4998495 ID: 304998495 7126. Arabidopsis thaliana Col-0 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770789 Sample Accession: GSM4998494 ID: 304998494 7127. Arabidopsis thaliana Chat-1 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770788 Sample Accession: GSM4998493 ID: 304998493 7128. Arabidopsis thaliana Chat-1 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998492/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770787 Sample Accession: GSM4998492 ID: 304998492 7129. Arabidopsis thaliana Chat-1 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770786 Sample Accession: GSM4998491 ID: 304998491 7130. Arabidopsis thaliana Chat-1 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770785 Sample Accession: GSM4998490 ID: 304998490 7131. Arabidopsis thaliana Bur rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770784 Sample Accession: GSM4998489 ID: 304998489 7132. Arabidopsis thaliana Bur rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770783 Sample Accession: GSM4998488 ID: 304998488 7133. Arabidopsis thaliana Bur rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770782 Sample Accession: GSM4998487 ID: 304998487 7134. Arabidopsis thaliana Bur rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770781 Sample Accession: GSM4998486 ID: 304998486 7135. Arabidopsis thaliana Bd-0 rep4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998485/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770780 Sample Accession: GSM4998485 ID: 304998485 7136. Arabidopsis thaliana Bd-0 rep3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998484/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770779 Sample Accession: GSM4998484 ID: 304998484 7137. Arabidopsis thaliana Bd-0 rep2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998483/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770778 Sample Accession: GSM4998483 ID: 304998483 7138. Arabidopsis thaliana Bd-0 rep1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770777 Sample Accession: GSM4998482 ID: 304998482 7139. Arabidopsis thaliana Ad-0 rep 4 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770776 Sample Accession: GSM4998481 ID: 304998481 7140. Arabidopsis thaliana Ad-0 rep 3 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770775 Sample Accession: GSM4998480 ID: 304998480 7141. Arabidopsis thaliana Ad-0 rep 2 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770774 Sample Accession: GSM4998479 ID: 304998479 7142. Arabidopsis thaliana Ad-0 rep 1 Organism: Arabidopsis thaliana Source name: Leaf Platform: GPL19580 Series: GSE164159 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4998nnn/GSM4998478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9770773 Sample Accession: GSM4998478 ID: 304998478 7143. SS32 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442477 Sample Accession: GSM4232787 ID: 304232787 7144. SS30 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442476 Sample Accession: GSM4232786 ID: 304232786 7145. SS24 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442475 Sample Accession: GSM4232785 ID: 304232785 7146. SS23 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442474 Sample Accession: GSM4232784 ID: 304232784 7147. SS16 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442473 Sample Accession: GSM4232783 ID: 304232783 7148. SS15 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442472 Sample Accession: GSM4232782 ID: 304232782 7149. SS03 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442471 Sample Accession: GSM4232781 ID: 304232781 7150. SS27 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442470 Sample Accession: GSM4232780 ID: 304232780 7151. SS31 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442469 Sample Accession: GSM4232779 ID: 304232779 7152. SS26 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442468 Sample Accession: GSM4232778 ID: 304232778 7153. SS25 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442467 Sample Accession: GSM4232777 ID: 304232777 7154. SS22 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442466 Sample Accession: GSM4232776 ID: 304232776 7155. SS21 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442465 Sample Accession: GSM4232775 ID: 304232775 7156. SS20 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442464 Sample Accession: GSM4232774 ID: 304232774 7157. SS19 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442463 Sample Accession: GSM4232773 ID: 304232773 7158. SS18 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442462 Sample Accession: GSM4232772 ID: 304232772 7159. SS17 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442461 Sample Accession: GSM4232771 ID: 304232771 7160. SS14 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442460 Sample Accession: GSM4232770 ID: 304232770 7161. SS09 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442459 Sample Accession: GSM4232769 ID: 304232769 7162. SS07 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442458 Sample Accession: GSM4232768 ID: 304232768 7163. SS05 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442457 Sample Accession: GSM4232767 ID: 304232767 7164. SS02 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442456 Sample Accession: GSM4232766 ID: 304232766 7165. SS29 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442455 Sample Accession: GSM4232765 ID: 304232765 7166. SS28 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442454 Sample Accession: GSM4232764 ID: 304232764 7167. SS13 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442453 Sample Accession: GSM4232763 ID: 304232763 7168. SS12 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442452 Sample Accession: GSM4232762 ID: 304232762 7169. SS10 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442451 Sample Accession: GSM4232761 ID: 304232761 7170. SS08 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442450 Sample Accession: GSM4232760 ID: 304232760 7171. SS06 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442449 Sample Accession: GSM4232759 ID: 304232759 7172. SS04 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442448 Sample Accession: GSM4232758 ID: 304232758 7173. SS11 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442447 Sample Accession: GSM4232757 ID: 304232757 7174. SS01 ATAC-seq Organism: Homo sapiens Source name: Peripheral blood CD8+ T cells Platform: GPL18573 Series: GSE142604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442446 Sample Accession: GSM4232756 ID: 304232756 7175. senescent rep2 (ATAC-seq) Organism: Homo sapiens Source name: HUVECs Platform: GPL20795 Series: GSE157867 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4777nnn/GSM4777220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9110853 Sample Accession: GSM4777220 ID: 304777220 7176. senescent rep1 (ATAC-seq) Organism: Homo sapiens Source name: HUVECs Platform: GPL20795 Series: GSE157867 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4777nnn/GSM4777219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9110852 Sample Accession: GSM4777219 ID: 304777219 7177. mid-aged rep2 (ATAC-seq) Organism: Homo sapiens Source name: HUVECs Platform: GPL20795 Series: GSE157867 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4777nnn/GSM4777218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9110851 Sample Accession: GSM4777218 ID: 304777218 7178. mid-aged rep1 (ATAC-seq) Organism: Homo sapiens Source name: HUVECs Platform: GPL20795 Series: GSE157867 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4777nnn/GSM4777217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9110850 Sample Accession: GSM4777217 ID: 304777217 7179. young rep2 (ATAC-seq) Organism: Homo sapiens Source name: HUVECs Platform: GPL20795 Series: GSE157867 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4777nnn/GSM4777216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9110849 Sample Accession: GSM4777216 ID: 304777216 7180. young rep1 (ATAC-seq) Organism: Homo sapiens Source name: HUVECs Platform: GPL20795 Series: GSE157867 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4777nnn/GSM4777215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9110848 Sample Accession: GSM4777215 ID: 304777215 7181. ETV4AAA-2 [ATAC-seq] Organism: Mus musculus Source name: primary prostate cells_ETV4AAA Platform: GPL11002 Series: GSE130311 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735716 Sample Accession: GSM3735907 ID: 303735907 7182. ETV4AAA-1 [ATAC-seq] Organism: Mus musculus Source name: primary prostate cells_ETV4AAA Platform: GPL11002 Series: GSE130311 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735715 Sample Accession: GSM3735906 ID: 303735906 7183. EYFP-2 [ATAC-seq] Organism: Mus musculus Source name: primary prostate cells_EYFP Platform: GPL11002 Series: GSE130311 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735714 Sample Accession: GSM3735905 ID: 303735905 7184. EYFP-1 [ATAC-seq] Organism: Mus musculus Source name: primary prostate cells_EYFP Platform: GPL11002 Series: GSE130311 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735713 Sample Accession: GSM3735904 ID: 303735904 7185. ETV4WT-2 [ATAC-seq] Organism: Mus musculus Source name: primary prostate cells_ETV4WT Platform: GPL11002 Series: GSE130311 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735712 Sample Accession: GSM3735903 ID: 303735903 7186. ETV4WT-1 [ATAC-seq] Organism: Mus musculus Source name: primary prostate cells_ETV4WT Platform: GPL11002 Series: GSE130311 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735711 Sample Accession: GSM3735902 ID: 303735902 7187. MM.1S dCBP-1 ATAC-Seq rep3 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390296 Sample Accession: GSM4871745 ID: 304871745 7188. MM.1S dCBP-1 ATAC-Seq rep2 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390295 Sample Accession: GSM4871744 ID: 304871744 7189. MM.1S dCBP-1 ATAC-Seq rep1 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390294 Sample Accession: GSM4871743 ID: 304871743 7190. MM.1S A485_GNE781 ATAC-Seq rep3 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390293 Sample Accession: GSM4871742 ID: 304871742 7191. MM.1S A485_GNE781 ATAC-Seq rep2 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390292 Sample Accession: GSM4871741 ID: 304871741 7192. MM.1S A485-GNE781 ATAC-Seq rep1 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390291 Sample Accession: GSM4871740 ID: 304871740 7193. MM.1S GNE-781 ATAC-Seq rep3 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390290 Sample Accession: GSM4871739 ID: 304871739 7194. MM.1S GNE-781 ATAC-Seq rep2 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390289 Sample Accession: GSM4871738 ID: 304871738 7195. MM.1S GNE-781 ATAC-Seq rep1 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390288 Sample Accession: GSM4871737 ID: 304871737 7196. MM.1S A-485 ATAC-Seq rep3 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390287 Sample Accession: GSM4871736 ID: 304871736 7197. MM.1S A-485 ATAC-Seq rep2 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390286 Sample Accession: GSM4871735 ID: 304871735 7198. MM.1S A-485 ATAC-Seq rep1 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390285 Sample Accession: GSM4871734 ID: 304871734 7199. MM.1S DMSO ATAC-Seq rep3 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390284 Sample Accession: GSM4871733 ID: 304871733 7200. MM.1S DMSO ATAC-Seq rep2 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390283 Sample Accession: GSM4871732 ID: 304871732 7201. MM.1S DMSO ATAC-Seq rep1 Organism: Homo sapiens Source name: MM1.S multiple myeloma cell line Platform: GPL18573 Series: GSE160333 GSE160337 FTP download: GEO (BB, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4871nnn/GSM4871731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390282 Sample Accession: GSM4871731 ID: 304871731 7202. cMYC-overexpressed NCI-H1963 cells_3 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955908 Sample Accession: GSM4729173 ID: 304729173 7203. cMYC-overexpressed NCI-H1963 cells_2 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955907 Sample Accession: GSM4729172 ID: 304729172 7204. cMYC-overexpressed NCI-H1963 cells_1 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955906 Sample Accession: GSM4729171 ID: 304729171 7205. LacZ-overexpressed NCI-H1963 cells_3 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955905 Sample Accession: GSM4729170 ID: 304729170 7206. LacZ-overexpressed NCI-H1963 cells_2 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955904 Sample Accession: GSM4729169 ID: 304729169 7207. LacZ-overexpressed NCI-H1963 cells_1 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955903 Sample Accession: GSM4729168 ID: 304729168 7208. ATAC for NCIH82 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955896 Sample Accession: GSM4729161 ID: 304729161 7209. ATAC for NCIH2171 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955895 Sample Accession: GSM4729160 ID: 304729160 7210. ATAC for NCIH524 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955894 Sample Accession: GSM4729159 ID: 304729159 7211. ATAC for NCIH209 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955893 Sample Accession: GSM4729158 ID: 304729158 7212. ATAC for NCIH1963 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955892 Sample Accession: GSM4729157 ID: 304729157 7213. ATAC for CORL88 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL18573 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955891 Sample Accession: GSM4729156 ID: 304729156 7214. LMyc-overexpressed with MYC gRNA 3 NCI-H82 cells_2 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL11154 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955902 Sample Accession: GSM4729167 ID: 304729167 7215. LMyc-overexpressed with MYC gRNA 2 NCI-H82 cells_2 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL11154 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955901 Sample Accession: GSM4729166 ID: 304729166 7216. LMyc-overexpressed with MYC gRNA 1 NCI-H82 cells_2 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL11154 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955900 Sample Accession: GSM4729165 ID: 304729165 7217. LacZ-overexpressed with non-target gRNA NCI-H82 cells_3 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL11154 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955899 Sample Accession: GSM4729164 ID: 304729164 7218. LacZ-overexpressed with non-target gRNA NCI-H82 cells_2 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL11154 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955898 Sample Accession: GSM4729163 ID: 304729163 7219. LacZ-overexpressed NCI-H82 cells_1 [ATAC-seq] Organism: Homo sapiens Source name: small cell lung cancer Platform: GPL11154 Series: GSE156333 GSE156334 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4729nnn/GSM4729162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8955897 Sample Accession: GSM4729162 ID: 304729162 7220. ATAC-seq_hir1_t8_3 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085023 Sample Accession: GSM4770666 ID: 304770666 7221. ATAC-seq_hir1_t8_2 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085022 Sample Accession: GSM4770665 ID: 304770665 7222. ATAC-seq_hir1_t8_1 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085021 Sample Accession: GSM4770664 ID: 304770664 7223. ATAC-seq_wt_t8_3 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085020 Sample Accession: GSM4770663 ID: 304770663 7224. ATAC-seq_wt_t8_2 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085019 Sample Accession: GSM4770662 ID: 304770662 7225. ATAC-seq_wt_t8_1 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085018 Sample Accession: GSM4770661 ID: 304770661 7226. ATAC-seq_hir1_t4_3 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085017 Sample Accession: GSM4770660 ID: 304770660 7227. ATAC-seq_hir1_t4_2 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085016 Sample Accession: GSM4770659 ID: 304770659 7228. ATAC-seq_hir1_t4_1 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085015 Sample Accession: GSM4770658 ID: 304770658 7229. ATAC-seq_wt_t4_3 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085014 Sample Accession: GSM4770657 ID: 304770657 7230. ATAC-seq_wt_t4_2 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085013 Sample Accession: GSM4770656 ID: 304770656 7231. ATAC-seq_wt_t4_1 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085012 Sample Accession: GSM4770655 ID: 304770655 7232. ATAC-seq_hir1_t0_3 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085011 Sample Accession: GSM4770654 ID: 304770654 7233. ATAC-seq_hir1_t0_2 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085010 Sample Accession: GSM4770653 ID: 304770653 7234. ATAC-seq_hir1_t0_1 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085009 Sample Accession: GSM4770652 ID: 304770652 7235. ATAC-seq_wt_t0_3 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085008 Sample Accession: GSM4770651 ID: 304770651 7236. ATAC-seq_wt_t0_2 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085007 Sample Accession: GSM4770650 ID: 304770650 7237. ATAC-seq_wt_t0_1 Organism: Candida albicans Source name: fungal cells Platform: GPL27827 Series: GSE157568 GSE157599 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9085006 Sample Accession: GSM4770649 ID: 304770649 7238. BIN67_BRG1_ATACseq_Rep4 Organism: Homo sapiens Source name: Cell Line Platform: GPL16791 Series: GSE151014 GSE151026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379128 Sample Accession: GSM4564174 ID: 304564174 7239. BIN67_BRG1_ATACseq_Rep3 Organism: Homo sapiens Source name: Cell Line Platform: GPL16791 Series: GSE151014 GSE151026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379127 Sample Accession: GSM4564173 ID: 304564173 7240. BIN67_BRG1_ATACseq_Rep2 Organism: Homo sapiens Source name: Cell Line Platform: GPL16791 Series: GSE151014 GSE151026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379126 Sample Accession: GSM4564172 ID: 304564172 7241. BIN67_BRG1_ATACseq_Rep1 Organism: Homo sapiens Source name: Cell Line Platform: GPL16791 Series: GSE151014 GSE151026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379125 Sample Accession: GSM4564171 ID: 304564171 7242. BIN67_Control_ATACseq_Rep4 Organism: Homo sapiens Source name: Cell Line Platform: GPL16791 Series: GSE151014 GSE151026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379124 Sample Accession: GSM4564170 ID: 304564170 7243. BIN67_Control_ATACseq_Rep3 Organism: Homo sapiens Source name: Cell Line Platform: GPL16791 Series: GSE151014 GSE151026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379123 Sample Accession: GSM4564169 ID: 304564169 7244. BIN67_Control_ATACseq_Rep2 Organism: Homo sapiens Source name: Cell Line Platform: GPL16791 Series: GSE151014 GSE151026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379122 Sample Accession: GSM4564168 ID: 304564168 7245. BIN67_Control_ATACseq_Rep1 Organism: Homo sapiens Source name: Cell Line Platform: GPL16791 Series: GSE151014 GSE151026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379121 Sample Accession: GSM4564167 ID: 304564167 7246. BEAS-2B_1b Organism: Homo sapiens Source name: BEAS-2B airway epithelial cells Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090252 Sample Accession: GSM4771544 ID: 304771544 7247. BEAS-2B_1a Organism: Homo sapiens Source name: BEAS-2B airway epithelial cells Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090251 Sample Accession: GSM4771543 ID: 304771543 7248. Brush-1b Organism: Homo sapiens Source name: fresh bronchial brush Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090250 Sample Accession: GSM4771542 ID: 304771542 7249. Brush-1a Organism: Homo sapiens Source name: fresh bronchial brush Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090249 Sample Accession: GSM4771541 ID: 304771541 7250. ILD-1b Organism: Homo sapiens Source name: primary airway epithelial cells Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090248 Sample Accession: GSM4771540 ID: 304771540 7251. ILD-1a Organism: Homo sapiens Source name: primary airway epithelial cells Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090247 Sample Accession: GSM4771539 ID: 304771539 7252. Norm-2b Organism: Homo sapiens Source name: primary airway epithelial cells Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090246 Sample Accession: GSM4771538 ID: 304771538 7253. Norm-2a Organism: Homo sapiens Source name: primary airway epithelial cells Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090245 Sample Accession: GSM4771537 ID: 304771537 7254. Norm-1b Organism: Homo sapiens Source name: primary airway epithelial cells Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090244 Sample Accession: GSM4771536 ID: 304771536 7255. Norm-1a Organism: Homo sapiens Source name: primary airway epithelial cells Platform: GPL18573 Series: GSE157606 GSE157691 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4771nnn/GSM4771535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9090243 Sample Accession: GSM4771535 ID: 304771535 7256. ATAC_mTOR_KO_Myc_Het_2 Organism: Mus musculus Source name: mTOR KO;c-Myc Het HSC cells Platform: GPL17021 Series: GSE134316 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9104698 Sample Accession: GSM4775057 ID: 304775057 7257. ATAC_mTOR_KO_2 Organism: Mus musculus Source name: mTOR KO HSC cells Platform: GPL17021 Series: GSE134316 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9104697 Sample Accession: GSM4775056 ID: 304775056 7258. ATAC_mTOR_WT_2 Organism: Mus musculus Source name: mTOR WT HSC cells Platform: GPL17021 Series: GSE134316 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9104696 Sample Accession: GSM4775055 ID: 304775055 7259. ATAC_mTOR_KO_Myc_Het Organism: Mus musculus Source name: mTOR KO;c-Myc Het HSC cells Platform: GPL17021 Series: GSE134316 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4775nnn/GSM4775054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9104695 Sample Accession: GSM4775054 ID: 304775054 7260. ATAC_mTOR_WT_Rapamycin Organism: Mus musculus Source name: mTOR WT HSC cells Platform: GPL17021 Series: GSE134317 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3942nnn/GSM3942120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6449251 Sample Accession: GSM3942120 ID: 303942120 7261. ATAC_mTOR_WT_AZD Organism: Mus musculus Source name: mTOR WT HSC cells Platform: GPL17021 Series: GSE134317 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3942nnn/GSM3942119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6449250 Sample Accession: GSM3942119 ID: 303942119 7262. ATAC_mTOR_WT_DMSO Organism: Mus musculus Source name: mTOR WT HSC cells Platform: GPL17021 Series: GSE134317 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3942nnn/GSM3942118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6449249 Sample Accession: GSM3942118 ID: 303942118 7263. R2_6h_control Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178806 Sample Accession: GSM4800886 ID: 304800886 7264. R2_6h_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178805 Sample Accession: GSM4800885 ID: 304800885 7265. R2_6h_BI_protac Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178804 Sample Accession: GSM4800884 ID: 304800884 7266. R2_5min_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178803 Sample Accession: GSM4800883 ID: 304800883 7267. R2_5min_DMSO Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178802 Sample Accession: GSM4800882 ID: 304800882 7268. R2_30min_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178801 Sample Accession: GSM4800881 ID: 304800881 7269. R2_24h_control Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178800 Sample Accession: GSM4800880 ID: 304800880 7270. R2_24h_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178799 Sample Accession: GSM4800879 ID: 304800879 7271. R2_24h_DMSO Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178798 Sample Accession: GSM4800878 ID: 304800878 7272. R2_24h_BI_protac Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178797 Sample Accession: GSM4800877 ID: 304800877 7273. R2_1h_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178796 Sample Accession: GSM4800876 ID: 304800876 7274. R2_10min_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178795 Sample Accession: GSM4800875 ID: 304800875 7275. R1_6h_control Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178794 Sample Accession: GSM4800874 ID: 304800874 7276. R1_6h_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178793 Sample Accession: GSM4800873 ID: 304800873 7277. R1_6h_BI_protac Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178792 Sample Accession: GSM4800872 ID: 304800872 7278. R1_5min_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178791 Sample Accession: GSM4800871 ID: 304800871 7279. R1_5min_DMSO Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178790 Sample Accession: GSM4800870 ID: 304800870 7280. R1_30min_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178789 Sample Accession: GSM4800869 ID: 304800869 7281. R1_24h_control Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178788 Sample Accession: GSM4800868 ID: 304800868 7282. R1_24h_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178787 Sample Accession: GSM4800867 ID: 304800867 7283. R1_24h_DMSO Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178786 Sample Accession: GSM4800866 ID: 304800866 7284. R1_24h_BI_protac Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178785 Sample Accession: GSM4800865 ID: 304800865 7285. R1_1h_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178784 Sample Accession: GSM4800864 ID: 304800864 7286. R1_10min_N Organism: Homo sapiens Source name: HAP1 Platform: GPL21290 Series: GSE148175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9178783 Sample Accession: GSM4800863 ID: 304800863 7287. ATAC-seq in LNCaP Organism: Homo sapiens Source name: Human prostate cancer cell line Platform: GPL24676 Series: GSE163624 GSE163632 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4983nnn/GSM4983061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9711163 Sample Accession: GSM4983061 ID: 304983061 7288. ATAC-seq in H1437 Organism: Homo sapiens Source name: Human lung cancer cell line Platform: GPL24676 Series: GSE163624 GSE163632 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4983nnn/GSM4983060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9711162 Sample Accession: GSM4983060 ID: 304983060 7289. ATAC-seq in H2126 Organism: Homo sapiens Source name: Human lung cancer cell line Platform: GPL24676 Series: GSE163624 GSE163632 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4983nnn/GSM4983059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9711161 Sample Accession: GSM4983059 ID: 304983059 7290. ATAC-seq in A549 Organism: Homo sapiens Source name: Human lung cancer cell line Platform: GPL24676 Series: GSE163624 GSE163632 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4983nnn/GSM4983058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9711160 Sample Accession: GSM4983058 ID: 304983058 7291. Tr1_Prdm1/Maf DKO_3 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208557 Sample Accession: GSM4808338 ID: 304808338 7292. Tr1_Prdm1/Maf DKO_2 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208556 Sample Accession: GSM4808337 ID: 304808337 7293. Tr1_Prdm1/Maf DKO_1 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208555 Sample Accession: GSM4808336 ID: 304808336 7294. Tr1_Maf_cKO_3 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208554 Sample Accession: GSM4808335 ID: 304808335 7295. Tr1_Maf_cKO_2 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208553 Sample Accession: GSM4808334 ID: 304808334 7296. Tr1_Maf_cKO_1 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208552 Sample Accession: GSM4808333 ID: 304808333 7297. Tr1_Prdm1 cKO_4 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208551 Sample Accession: GSM4808332 ID: 304808332 7298. Tr1_Prdm1 cKO_3 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208550 Sample Accession: GSM4808331 ID: 304808331 7299. Tr1_Prdm1 cKO_2 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208549 Sample Accession: GSM4808330 ID: 304808330 7300. Tr1_Prdm1 cKO_1 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208548 Sample Accession: GSM4808329 ID: 304808329 7301. Tr1_control_5 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208547 Sample Accession: GSM4808328 ID: 304808328 7302. Tr1_control_4 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208546 Sample Accession: GSM4808327 ID: 304808327 7303. Tr1_control_3 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208545 Sample Accession: GSM4808326 ID: 304808326 7304. Tr1_control_2 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208544 Sample Accession: GSM4808325 ID: 304808325 7305. Tr1_control_1 Organism: Mus musculus Source name: Tr1 cells derived in vitro with IL-27 Platform: GPL21626 Series: GSE158701 GSE159208 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9208543 Sample Accession: GSM4808324 ID: 304808324 7306. IRF8KO_MDP_rep2 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511850/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241969 Sample Accession: GSM4511850 ID: 304511850 7307. IRF8KO_MDP_rep1 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241968 Sample Accession: GSM4511849 ID: 304511849 7308. WT_CDP_rep2 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241967 Sample Accession: GSM4511848 ID: 304511848 7309. WT_CDP_rep1 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241966 Sample Accession: GSM4511847 ID: 304511847 7310. WT_MDP_rep2 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241965 Sample Accession: GSM4511846 ID: 304511846 7311. WT_MDP_rep1 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241964 Sample Accession: GSM4511845 ID: 304511845 7312. WT_LMPP_rep2 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241963 Sample Accession: GSM4511844 ID: 304511844 7313. WT_LMPP_rep1 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241962 Sample Accession: GSM4511843 ID: 304511843 7314. WT_LT-HSC_rep2 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241961 Sample Accession: GSM4511842 ID: 304511842 7315. WT_LT-HSC_rep1 [ATAC-Seq] Organism: Mus musculus Source name: bone marrow cells Platform: GPL19057 Series: GSE149756 GSE149762 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4511nnn/GSM4511841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8241960 Sample Accession: GSM4511841 ID: 304511841 7316. SF_429_TNF: ATAC-seq, Primary FLS, TNF stimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705943 Sample Accession: GSM4981528 ID: 304981528 7317. SF_429: ATAC-seq, Primary FLS, unstimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705942 Sample Accession: GSM4981527 ID: 304981527 7318. SF_427_TNF: ATAC-seq, Primary FLS, TNF stimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705941 Sample Accession: GSM4981526 ID: 304981526 7319. SF_427: ATAC-seq, Primary FLS, unstimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705940 Sample Accession: GSM4981525 ID: 304981525 7320. SF_424_TNF: ATAC-seq, Primary FLS, TNF stimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705939 Sample Accession: GSM4981524 ID: 304981524 7321. SF_424: ATAC-seq, Primary FLS, unstimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705938 Sample Accession: GSM4981523 ID: 304981523 7322. SF_420_TNF: ATAC-seq, Primary FLS, TNF stimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705937 Sample Accession: GSM4981522 ID: 304981522 7323. SF_420: ATAC-seq, Primary FLS, unstimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705936 Sample Accession: GSM4981521 ID: 304981521 7324. SF_415B_TNF: ATAC-seq, Primary FLS, TNF stimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705935 Sample Accession: GSM4981520 ID: 304981520 7325. SF_415B: ATAC-seq, Primary FLS, unstimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705934 Sample Accession: GSM4981519 ID: 304981519 7326. SF_346_TNF: ATAC-seq, Primary FLS, TNF stimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705933 Sample Accession: GSM4981518 ID: 304981518 7327. SF_346: ATAC-seq, Primary FLS, unstimulated Organism: Homo sapiens Source name: Primary FLS Platform: GPL20301 Series: GSE163548 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9705932 Sample Accession: GSM4981517 ID: 304981517 7328. ATAC-seq 24h 9/27/17 Organism: Drosophila melanogaster Source name: optic lobe Platform: GPL19132 Series: GSE163307 GSE163311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4976nnn/GSM4976914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9689643 Sample Accession: GSM4976914 ID: 304976914 7329. ATAC-seq 24h 9/26/17 Organism: Drosophila melanogaster Source name: optic lobe Platform: GPL19132 Series: GSE163307 GSE163311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4976nnn/GSM4976913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9689642 Sample Accession: GSM4976913 ID: 304976913 7330. ATAC-seq 24h 9/25/17 Organism: Drosophila melanogaster Source name: optic lobe Platform: GPL19132 Series: GSE163307 GSE163311 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4976nnn/GSM4976912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9689641 Sample Accession: GSM4976912 ID: 304976912 7331. ATAC-seq mut06-2 Organism: Mus musculus Source name: CAR T cell Platform: GPL19057 Series: GSE142506 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7431040 Sample Accession: GSM4230651 ID: 304230651 7332. ATAC-seq mut06-1 Organism: Mus musculus Source name: CAR T cell Platform: GPL19057 Series: GSE142506 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7431039 Sample Accession: GSM4230650 ID: 304230650 7333. ATAC-seq m19hBBz-2 Organism: Mus musculus Source name: CAR T cell Platform: GPL19057 Series: GSE142506 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7431038 Sample Accession: GSM4230649 ID: 304230649 7334. ATAC-seq m19hBBz-1 Organism: Mus musculus Source name: CAR T cell Platform: GPL19057 Series: GSE142506 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7431037 Sample Accession: GSM4230648 ID: 304230648 7335. ATAC-seq m1928z-2 Organism: Mus musculus Source name: CAR T cell Platform: GPL19057 Series: GSE142506 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7431036 Sample Accession: GSM4230647 ID: 304230647 7336. ATAC-seq m1928z-1 Organism: Mus musculus Source name: CAR T cell Platform: GPL19057 Series: GSE142506 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7431035 Sample Accession: GSM4230646 ID: 304230646 7337. KOinGP_Day21_rep2 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213727 Sample Accession: GSM4506460 ID: 304506460 7338. KOinGP_Day21_rep1 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213726 Sample Accession: GSM4506459 ID: 304506459 7339. KOinWT_Day21_rep2 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213725 Sample Accession: GSM4506458 ID: 304506458 7340. KOinWT_Day21_rep1 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213724 Sample Accession: GSM4506457 ID: 304506457 7341. WTinGP_Day21_rep2 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213723 Sample Accession: GSM4506456 ID: 304506456 7342. WTinGP_Day21_rep1 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213722 Sample Accession: GSM4506455 ID: 304506455 7343. WTinGP_Day7_rep2 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213721 Sample Accession: GSM4506454 ID: 304506454 7344. WTinGP_Day7_rep1 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213720 Sample Accession: GSM4506453 ID: 304506453 7345. WTinWT_Day21_rep2 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213719 Sample Accession: GSM4506452 ID: 304506452 7346. WTinWT_Day21_rep1 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213718 Sample Accession: GSM4506451 ID: 304506451 7347. WTinWT_Day7_rep2 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213717 Sample Accession: GSM4506450 ID: 304506450 7348. WTinWT_Day7_rep1 [ATAC-Seq] Organism: Mus musculus Source name: P14 CD8+ T cells Platform: GPL21103 Series: GSE149642 GSE149643 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506449/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213716 Sample Accession: GSM4506449 ID: 304506449 7349. ATAC_IL23 Organism: Mus musculus Source name: FACS-purified total mouse skin ILC Platform: GPL21626 Series: GSE149622 FTP download: GEO (BED, MTX, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8209016 Sample Accession: GSM4506043 ID: 304506043 7350. ATAC_naive Organism: Mus musculus Source name: FACS-purified total mouse skin ILC Platform: GPL21626 Series: GSE149622 FTP download: GEO (BED, MTX, TBI, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8209015 Sample Accession: GSM4506042 ID: 304506042 7351. Dbt/iP3F - 24 hr Dox - ATAC-seq - rep2 Organism: Homo sapiens Source name: Dbt/iP3F Platform: GPL20301 Series: GSE163068 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674636 Sample Accession: GSM4971635 ID: 304971635 7352. Dbt/iP3F - 24 hr Dox - ATAC-seq - rep1 Organism: Homo sapiens Source name: Dbt/iP3F Platform: GPL20301 Series: GSE163068 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674635 Sample Accession: GSM4971634 ID: 304971634 7353. Dbt/iP3F - 8 hr Dox - ATAC-seq - rep2 Organism: Homo sapiens Source name: Dbt/iP3F Platform: GPL20301 Series: GSE163068 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674634 Sample Accession: GSM4971633 ID: 304971633 7354. Dbt/iP3F - 8 hr Dox - ATAC-seq - rep1 Organism: Homo sapiens Source name: Dbt/iP3F Platform: GPL20301 Series: GSE163068 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674633 Sample Accession: GSM4971632 ID: 304971632 7355. Dbt/iP3F - 0 hr Dox - ATAC-seq - rep2 Organism: Homo sapiens Source name: Dbt/iP3F Platform: GPL20301 Series: GSE163068 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674632 Sample Accession: GSM4971631 ID: 304971631 7356. Dbt/iP3F - 0 hr Dox - ATAC-seq - rep1 Organism: Homo sapiens Source name: Dbt/iP3F Platform: GPL20301 Series: GSE163068 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674631 Sample Accession: GSM4971630 ID: 304971630 7357. RH4 - ATAC-seq Organism: Homo sapiens Source name: RH4 Platform: GPL20301 Series: GSE163068 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4971nnn/GSM4971629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9674630 Sample Accession: GSM4971629 ID: 304971629 7358. ATAC-seq WT - rep4 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390805 Sample Accession: GSM4872019 ID: 304872019 7359. ATAC-seq WT - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390804 Sample Accession: GSM4872018 ID: 304872018 7360. ATAC-seq WT - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390803 Sample Accession: GSM4872017 ID: 304872017 7361. ATAC-seq WT - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390802 Sample Accession: GSM4872016 ID: 304872016 7362. ATAC-seq set2 deletion - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390801 Sample Accession: GSM4872015 ID: 304872015 7363. ATAC-seq set2 deletion - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390800 Sample Accession: GSM4872014 ID: 304872014 7364. ATAC-seq set2 deletion - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390799 Sample Accession: GSM4872013 ID: 304872013 7365. ATAC-seq H3K36A - rep4 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390798 Sample Accession: GSM4872012 ID: 304872012 7366. ATAC-seq H3K36A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390797 Sample Accession: GSM4872011 ID: 304872011 7367. ATAC-seq H3K36A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390796 Sample Accession: GSM4872010 ID: 304872010 7368. ATAC-seq H3K36A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390795 Sample Accession: GSM4872009 ID: 304872009 7369. ATAC-seq H3K122A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390794 Sample Accession: GSM4872008 ID: 304872008 7370. ATAC-seq H3K122A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390793 Sample Accession: GSM4872007 ID: 304872007 7371. ATAC-seq H3K122A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390792 Sample Accession: GSM4872006 ID: 304872006 7372. WT - rep4 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390791 Sample Accession: GSM4872005 ID: 304872005 7373. WT - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390790 Sample Accession: GSM4872004 ID: 304872004 7374. WT - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390789 Sample Accession: GSM4872003 ID: 304872003 7375. WT - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390788 Sample Accession: GSM4872002 ID: 304872002 7376. H4Y88F - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390787 Sample Accession: GSM4872001 ID: 304872001 7377. H4Y88F - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390786 Sample Accession: GSM4872000 ID: 304872000 7378. H4Y88F - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390785 Sample Accession: GSM4871999 ID: 304871999 7379. H4Y88A - rep4 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390784 Sample Accession: GSM4871998 ID: 304871998 7380. H4Y88A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390783 Sample Accession: GSM4871997 ID: 304871997 7381. H4Y88A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390782 Sample Accession: GSM4871996 ID: 304871996 7382. H4Y88A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390781 Sample Accession: GSM4871995 ID: 304871995 7383. H4R55A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390780 Sample Accession: GSM4871994 ID: 304871994 7384. H4R55A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390779 Sample Accession: GSM4871993 ID: 304871993 7385. H4R55A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390778 Sample Accession: GSM4871992 ID: 304871992 7386. H4K91R - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390777 Sample Accession: GSM4871991 ID: 304871991 7387. H4K91R - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390776 Sample Accession: GSM4871990 ID: 304871990 7388. H4K91R - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390775 Sample Accession: GSM4871989 ID: 304871989 7389. H4K91Q - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390774 Sample Accession: GSM4871988 ID: 304871988 7390. H4K91Q - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390773 Sample Accession: GSM4871987 ID: 304871987 7391. H4K91Q - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390772 Sample Accession: GSM4871986 ID: 304871986 7392. H4K44R - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390771 Sample Accession: GSM4871985 ID: 304871985 7393. H4K44R - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390770 Sample Accession: GSM4871984 ID: 304871984 7394. H4K44R - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390769 Sample Accession: GSM4871983 ID: 304871983 7395. H4K44Q - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390768 Sample Accession: GSM4871982 ID: 304871982 7396. H4K44Q - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390767 Sample Accession: GSM4871981 ID: 304871981 7397. H4K44Q - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390766 Sample Accession: GSM4871980 ID: 304871980 7398. H3T3D - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390765 Sample Accession: GSM4871979 ID: 304871979 7399. H3T3D - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390764 Sample Accession: GSM4871978 ID: 304871978 7400. H3T3A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390763 Sample Accession: GSM4871977 ID: 304871977 7401. H3T3A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390762 Sample Accession: GSM4871976 ID: 304871976 7402. H3S86D - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390761 Sample Accession: GSM4871975 ID: 304871975 7403. H3S86D - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390760 Sample Accession: GSM4871974 ID: 304871974 7404. H3S86D - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390759 Sample Accession: GSM4871973 ID: 304871973 7405. H3S86A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390758 Sample Accession: GSM4871972 ID: 304871972 7406. H3S86A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390757 Sample Accession: GSM4871971 ID: 304871971 7407. H3S86A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390756 Sample Accession: GSM4871970 ID: 304871970 7408. H3S31D - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390755 Sample Accession: GSM4871969 ID: 304871969 7409. H3S31D - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390754 Sample Accession: GSM4871968 ID: 304871968 7410. H3S31D - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390753 Sample Accession: GSM4871967 ID: 304871967 7411. H3R40K - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390752 Sample Accession: GSM4871966 ID: 304871966 7412. H3R40K - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390751 Sample Accession: GSM4871965 ID: 304871965 7413. H3R40K - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390750 Sample Accession: GSM4871964 ID: 304871964 7414. H3K4R - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390749 Sample Accession: GSM4871963 ID: 304871963 7415. H3K4R - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390748 Sample Accession: GSM4871962 ID: 304871962 7416. H3K4R - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390747 Sample Accession: GSM4871961 ID: 304871961 7417. H3K4Q - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390746 Sample Accession: GSM4871960 ID: 304871960 7418. H3K4Q - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390745 Sample Accession: GSM4871959 ID: 304871959 7419. H3K4Q - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390744 Sample Accession: GSM4871958 ID: 304871958 7420. H3K37R - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390743 Sample Accession: GSM4871957 ID: 304871957 7421. H3K37R - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390742 Sample Accession: GSM4871956 ID: 304871956 7422. H3K37R - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390741 Sample Accession: GSM4871955 ID: 304871955 7423. H3K37Q - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390740 Sample Accession: GSM4871954 ID: 304871954 7424. H3K37Q - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390739 Sample Accession: GSM4871953 ID: 304871953 7425. H3K37Q - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390738 Sample Accession: GSM4871952 ID: 304871952 7426. H3K36R - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390737 Sample Accession: GSM4871951 ID: 304871951 7427. H3K36R - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390736 Sample Accession: GSM4871950 ID: 304871950 7428. H3K36R - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390735 Sample Accession: GSM4871949 ID: 304871949 7429. H3K36Q - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390734 Sample Accession: GSM4871948 ID: 304871948 7430. H3K36Q - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390733 Sample Accession: GSM4871947 ID: 304871947 7431. H3K36Q - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390732 Sample Accession: GSM4871946 ID: 304871946 7432. H3K36A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390731 Sample Accession: GSM4871945 ID: 304871945 7433. H3K36A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390730 Sample Accession: GSM4871944 ID: 304871944 7434. H3K36A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390729 Sample Accession: GSM4871943 ID: 304871943 7435. H3K18A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390728 Sample Accession: GSM4871942 ID: 304871942 7436. H3K18A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390727 Sample Accession: GSM4871941 ID: 304871941 7437. H3K18A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390726 Sample Accession: GSM4871940 ID: 304871940 7438. H3K122Q - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390725 Sample Accession: GSM4871939 ID: 304871939 7439. H3K122Q - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390724 Sample Accession: GSM4871938 ID: 304871938 7440. H3K122Q - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390723 Sample Accession: GSM4871937 ID: 304871937 7441. H3K122A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390722 Sample Accession: GSM4871936 ID: 304871936 7442. H3K122A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390721 Sample Accession: GSM4871935 ID: 304871935 7443. H3K122A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390720 Sample Accession: GSM4871934 ID: 304871934 7444. H3K121R - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390719 Sample Accession: GSM4871933 ID: 304871933 7445. H3K121R - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390718 Sample Accession: GSM4871932 ID: 304871932 7446. H3K121R - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390717 Sample Accession: GSM4871931 ID: 304871931 7447. H3K121Q - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390716 Sample Accession: GSM4871930 ID: 304871930 7448. H3K121Q - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390715 Sample Accession: GSM4871929 ID: 304871929 7449. H3K121Q - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390714 Sample Accession: GSM4871928 ID: 304871928 7450. H3K121A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390713 Sample Accession: GSM4871927 ID: 304871927 7451. H3K121A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390712 Sample Accession: GSM4871926 ID: 304871926 7452. H3K121A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390711 Sample Accession: GSM4871925 ID: 304871925 7453. H3K115R - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390710 Sample Accession: GSM4871924 ID: 304871924 7454. H3K115R - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390709 Sample Accession: GSM4871923 ID: 304871923 7455. H3K115R - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390708 Sample Accession: GSM4871922 ID: 304871922 7456. H3K115Q - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390707 Sample Accession: GSM4871921 ID: 304871921 7457. H3K115Q - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390706 Sample Accession: GSM4871920 ID: 304871920 7458. H3K115Q - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390705 Sample Accession: GSM4871919 ID: 304871919 7459. H3K115A - rep3 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390704 Sample Accession: GSM4871918 ID: 304871918 7460. H3K115A - rep2 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390703 Sample Accession: GSM4871917 ID: 304871917 7461. H3K115A - rep1 Organism: Saccharomyces cerevisiae Source name: Budding yeast cells Platform: GPL21656 Series: GSE160350 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9390702 Sample Accession: GSM4871916 ID: 304871916 7462. SK_VD4_REP3 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650355 Sample Accession: GSM4964178 ID: 304964178 7463. SK_VD4_REP2 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650354 Sample Accession: GSM4964177 ID: 304964177 7464. SK_VD4_REP1 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650353 Sample Accession: GSM4964176 ID: 304964176 7465. SK_ETH4_REP3 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650352 Sample Accession: GSM4964175 ID: 304964175 7466. SK_ETH4_REP2 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650351 Sample Accession: GSM4964174 ID: 304964174 7467. SK_ETH4_REP1 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650350 Sample Accession: GSM4964173 ID: 304964173 7468. SK_VD18_REP3 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650349 Sample Accession: GSM4964172 ID: 304964172 7469. SK_VD18_REP2 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650348 Sample Accession: GSM4964171 ID: 304964171 7470. SK_VD18_REP1 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650347 Sample Accession: GSM4964170 ID: 304964170 7471. SK_ETH18_REP3 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650346 Sample Accession: GSM4964169 ID: 304964169 7472. SK_ETH18_REP2 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650345 Sample Accession: GSM4964168 ID: 304964168 7473. SK_ETH18_REP1 Organism: Homo sapiens Source name: colonic organoid Platform: GPL20301 Series: GSE162856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650344 Sample Accession: GSM4964167 ID: 304964167 7474. Lega_45_scATAC Organism: Homo sapiens Source name: Brodmann Area 38 Platform: GPL18573 Series: GSE139914 FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4649nnn/GSM4649024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8651457 Sample Accession: GSM4649024 ID: 304649024 7475. Lega_42_scATAC Organism: Homo sapiens Source name: Brodmann Area 38 Platform: GPL18573 Series: GSE139914 FTP download: GEO (H5) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4649nnn/GSM4649023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8651456 Sample Accession: GSM4649023 ID: 304649023 7476. Lega_90_scATAC Organism: Homo sapiens Source name: Brodmann Area 38 Platform: GPL18573 Series: GSE139914 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099411 Sample Accession: GSM4148757 ID: 304148757 7477. SK_VD24_REP3 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650367 Sample Accession: GSM4964190 ID: 304964190 7478. SK_VD24_REP2 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650366 Sample Accession: GSM4964189 ID: 304964189 7479. SK_VD24_REP1 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650365 Sample Accession: GSM4964188 ID: 304964188 7480. SK_ETH24_REP3 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650364 Sample Accession: GSM4964187 ID: 304964187 7481. SK_ETH24_REP2 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650363 Sample Accession: GSM4964186 ID: 304964186 7482. SK_ETH24_REP1 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650362 Sample Accession: GSM4964185 ID: 304964185 7483. SK_VD6_REP3 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650361 Sample Accession: GSM4964184 ID: 304964184 7484. SK_VD6_REP2 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650360 Sample Accession: GSM4964183 ID: 304964183 7485. SK_VD6_REP1 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650359 Sample Accession: GSM4964182 ID: 304964182 7486. SK_ETH6_REP3 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650358 Sample Accession: GSM4964181 ID: 304964181 7487. SK_ETH6_REP2 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650357 Sample Accession: GSM4964180 ID: 304964180 7488. SK_ETH6_REP1 Organism: Homo sapiens Source name: colonic organoid Platform: GPL24676 Series: GSE162856 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4964nnn/GSM4964179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9650356 Sample Accession: GSM4964179 ID: 304964179 7489. ATAC-Seq 0copy_3 Organism: Mus musculus Source name: murine ESC Platform: GPL19057 Series: GSE143993 GSE149531 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4504nnn/GSM4504492/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8199963 Sample Accession: GSM4504492 ID: 304504492 7490. ATAC-Seq 0copy_2 Organism: Mus musculus Source name: murine ESC Platform: GPL19057 Series: GSE143993 GSE149531 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4504nnn/GSM4504491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8199962 Sample Accession: GSM4504491 ID: 304504491 7491. ATAC-Seq 0copy_1 Organism: Mus musculus Source name: murine ESC Platform: GPL19057 Series: GSE143993 GSE149531 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4504nnn/GSM4504490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8199961 Sample Accession: GSM4504490 ID: 304504490 7492. ATAC-Seq wt_3 Organism: Mus musculus Source name: murine ESC Platform: GPL19057 Series: GSE143993 GSE149531 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4504nnn/GSM4504489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8199960 Sample Accession: GSM4504489 ID: 304504489 7493. ATAC-Seq wt_2 Organism: Mus musculus Source name: murine ESC Platform: GPL19057 Series: GSE143993 GSE149531 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4504nnn/GSM4504488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8199959 Sample Accession: GSM4504488 ID: 304504488 7494. ATAC-Seq wt_1 Organism: Mus musculus Source name: murine ESC Platform: GPL19057 Series: GSE143993 GSE149531 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4504nnn/GSM4504487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8199958 Sample Accession: GSM4504487 ID: 304504487 7495. LSC_ATAC_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948993 Sample Accession: GSM4728094 ID: 304728094 7496. LSC_ATAC_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948992 Sample Accession: GSM4728093 ID: 304728093 7497. LSC_SMAD3_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948991 Sample Accession: GSM4728092 ID: 304728092 7498. LSC_SMAD3_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948990 Sample Accession: GSM4728091 ID: 304728091 7499. LSC_PAX6_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948989 Sample Accession: GSM4728090 ID: 304728090 7500. LSC_PAX6_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948988 Sample Accession: GSM4728089 ID: 304728089 7501. LSC_RUNX1_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728088/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948987 Sample Accession: GSM4728088 ID: 304728088 7502. LSC_RUNX1_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728087/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948986 Sample Accession: GSM4728087 ID: 304728087 7503. LSC_shRUNX1_H3K27me3_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728086/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948985 Sample Accession: GSM4728086 ID: 304728086 7504. LSC_shRUNX1_H3K27me3_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948984 Sample Accession: GSM4728085 ID: 304728085 7505. LSC_scr_H3K27me3_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948983 Sample Accession: GSM4728084 ID: 304728084 7506. LSC_scr_H3K27me3_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948982 Sample Accession: GSM4728083 ID: 304728083 7507. LSC_shRUNX1_H3K4me3_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948981 Sample Accession: GSM4728082 ID: 304728082 7508. LSC_shRUNX1_H3K4me3_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948980 Sample Accession: GSM4728081 ID: 304728081 7509. LSC_scr_H3K4me3_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948979 Sample Accession: GSM4728080 ID: 304728080 7510. LSC_scr_H3K4me3_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948978 Sample Accession: GSM4728079 ID: 304728079 7511. LSC_shRUNX1_H3K4me1_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948977 Sample Accession: GSM4728078 ID: 304728078 7512. LSC_shRUNX1_H3K4me1_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948976 Sample Accession: GSM4728077 ID: 304728077 7513. LSC_scr_H3K4me1_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948975 Sample Accession: GSM4728076 ID: 304728076 7514. LSC_scr_H3K4me1_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948974 Sample Accession: GSM4728075 ID: 304728075 7515. LSC_shRUNX1_H3K27AC_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948973 Sample Accession: GSM4728074 ID: 304728074 7516. LSC_shRUNX1_H3K27AC_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728073/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948972 Sample Accession: GSM4728073 ID: 304728073 7517. LSC_scr_H3K27AC_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728072/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948971 Sample Accession: GSM4728072 ID: 304728072 7518. LSC_scr_H3K27AC_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728071/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948970 Sample Accession: GSM4728071 ID: 304728071 7519. LSC_H3K27me3_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728070/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948969 Sample Accession: GSM4728070 ID: 304728070 7520. LSC_H3K27me3_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728069/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948968 Sample Accession: GSM4728069 ID: 304728069 7521. LSC_H3K4me3_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728068/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948967 Sample Accession: GSM4728068 ID: 304728068 7522. LSC_H3K4me3_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728067/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948966 Sample Accession: GSM4728067 ID: 304728067 7523. LSC_H3K4me1_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728066/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948965 Sample Accession: GSM4728066 ID: 304728066 7524. LSC_H3K4me1_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948964 Sample Accession: GSM4728065 ID: 304728065 7525. LSC_H3K27AC_rep2 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728064/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948963 Sample Accession: GSM4728064 ID: 304728064 7526. LSC_H3K27AC_rep1 Organism: Homo sapiens Source name: limbal stem cells Platform: GPL20795 Series: GSE156272 GSE156273 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4728nnn/GSM4728063/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8948962 Sample Accession: GSM4728063 ID: 304728063 7527. BulkATAC_THP1-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633386 Sample Accession: GSM4957260 ID: 304957260 7528. BulkATAC_THP1-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633385 Sample Accession: GSM4957259 ID: 304957259 7529. BulkATAC_T24-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633384 Sample Accession: GSM4957258 ID: 304957258 7530. BulkATAC_T24-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633383 Sample Accession: GSM4957257 ID: 304957257 7531. BulkATAC_MCF7-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633382 Sample Accession: GSM4957256 ID: 304957256 7532. BulkATAC_MCF7-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633381 Sample Accession: GSM4957255 ID: 304957255 7533. BulkATAC_MCF10A-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633380 Sample Accession: GSM4957254 ID: 304957254 7534. BulkATAC_MCF10A-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633379 Sample Accession: GSM4957253 ID: 304957253 7535. BulkATAC_K562-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633378 Sample Accession: GSM4957252 ID: 304957252 7536. BulkATAC_K562-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633377 Sample Accession: GSM4957251 ID: 304957251 7537. BulkATAC_Jurkat-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633376 Sample Accession: GSM4957250 ID: 304957250 7538. BulkATAC_Jurkat-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633375 Sample Accession: GSM4957249 ID: 304957249 7539. BulkATAC_HT1080-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633374 Sample Accession: GSM4957248 ID: 304957248 7540. BulkATAC_HT1080-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633373 Sample Accession: GSM4957247 ID: 304957247 7541. BulkATAC_HeLa-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633372 Sample Accession: GSM4957246 ID: 304957246 7542. BulkATAC_HeLa-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633371 Sample Accession: GSM4957245 ID: 304957245 7543. BulkATAC_GM12878-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633370 Sample Accession: GSM4957244 ID: 304957244 7544. BulkATAC_GM12878-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633369 Sample Accession: GSM4957243 ID: 304957243 7545. BulkATAC_293T-RepB Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633368 Sample Accession: GSM4957242 ID: 304957242 7546. BulkATAC_293T-RepA Organism: Homo sapiens Source name: Immortalized cell line Platform: GPL20301 Series: GSE162690 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9633367 Sample Accession: GSM4957241 ID: 304957241 7547. ER-HOXA9 Combo treated Day 2 rep2 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4951nnn/GSM4951003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610831 Sample Accession: GSM4951003 ID: 304951003 7548. ER-HOXA9 Combo treated Day 2 rep1 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4951nnn/GSM4951002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610830 Sample Accession: GSM4951002 ID: 304951002 7549. ER-HOXA9 CER treated Day 2 rep2 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4951nnn/GSM4951001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610829 Sample Accession: GSM4951001 ID: 304951001 7550. ER-HOXA9 CER treated Day 2 rep1 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4951nnn/GSM4951000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610828 Sample Accession: GSM4951000 ID: 304951000 7551. ER-HOXA9 6MP treated Day 2 rep2 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4950nnn/GSM4950999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610827 Sample Accession: GSM4950999 ID: 304950999 7552. ER-HOXA9 6MP treated Day 2 rep1 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4950nnn/GSM4950998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610826 Sample Accession: GSM4950998 ID: 304950998 7553. ER-HOXA9 LSD1i treated Day 2 rep2 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4950nnn/GSM4950997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610825 Sample Accession: GSM4950997 ID: 304950997 7554. ER-HOXA9 LSD1i treated Day 2 rep1 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4950nnn/GSM4950996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610824 Sample Accession: GSM4950996 ID: 304950996 7555. ER-HOXA9 Veh treated Day 2 rep2 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4950nnn/GSM4950995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610823 Sample Accession: GSM4950995 ID: 304950995 7556. ER-HOXA9 Veh treated Day 2 rep1 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4950nnn/GSM4950994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610822 Sample Accession: GSM4950994 ID: 304950994 7557. ER-HOXA9 Non-treated Day 0 rep2 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4950nnn/GSM4950993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610821 Sample Accession: GSM4950993 ID: 304950993 7558. ER-HOXA9 Non-treated Day 0 rep1 [ATAC-Seq] Organism: Mus musculus Source name: Granulocyte-monocyte progenitor Platform: GPL21103 Series: GSE162397 GSE162398 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4950nnn/GSM4950992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9610820 Sample Accession: GSM4950992 ID: 304950992 7559. ATAC-Seq F106-C27-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620056 Sample Accession: GSM4953493 ID: 304953493 7560. ATAC-Seq F104-C35-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620055 Sample Accession: GSM4953492 ID: 304953492 7561. ATAC-Seq F103-C35-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620054 Sample Accession: GSM4953491 ID: 304953491 7562. ATAC-Seq F102-C34-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620053 Sample Accession: GSM4953490 ID: 304953490 7563. ATAC-Seq F101-C34-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620052 Sample Accession: GSM4953489 ID: 304953489 7564. ATAC-Seq F100-C33-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620051 Sample Accession: GSM4953488 ID: 304953488 7565. ATAC-Seq F099-C32-T2 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620050 Sample Accession: GSM4953487 ID: 304953487 7566. ATAC-Seq F097-C31-M3 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620049 Sample Accession: GSM4953486 ID: 304953486 7567. ATAC-Seq F096-C31-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620048 Sample Accession: GSM4953485 ID: 304953485 7568. ATAC-Seq F095-C31-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620047 Sample Accession: GSM4953484 ID: 304953484 7569. ATAC-Seq F093-C31-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620046 Sample Accession: GSM4953483 ID: 304953483 7570. ATAC-Seq F092-C30-M3 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620045 Sample Accession: GSM4953482 ID: 304953482 7571. ATAC-Seq F091-C30-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620044 Sample Accession: GSM4953481 ID: 304953481 7572. ATAC-Seq F090-C30-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620043 Sample Accession: GSM4953480 ID: 304953480 7573. ATAC-Seq F089-C30-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620042 Sample Accession: GSM4953479 ID: 304953479 7574. ATAC-Seq F088-C30-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620041 Sample Accession: GSM4953478 ID: 304953478 7575. ATAC-Seq F087-C29-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620040 Sample Accession: GSM4953477 ID: 304953477 7576. ATAC-Seq F086-C29-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620039 Sample Accession: GSM4953476 ID: 304953476 7577. ATAC-Seq F085-C28-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620038 Sample Accession: GSM4953475 ID: 304953475 7578. ATAC-Seq F084-C28-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620037 Sample Accession: GSM4953474 ID: 304953474 7579. ATAC-Seq F083-C28-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620036 Sample Accession: GSM4953473 ID: 304953473 7580. ATAC-Seq F082-C28-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620035 Sample Accession: GSM4953472 ID: 304953472 7581. ATAC-Seq F081-C27-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620034 Sample Accession: GSM4953471 ID: 304953471 7582. ATAC-Seq F080-C27-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620033 Sample Accession: GSM4953470 ID: 304953470 7583. ATAC-Seq F079-C27-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620032 Sample Accession: GSM4953469 ID: 304953469 7584. ATAC-Seq F078-C26-M3 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620031 Sample Accession: GSM4953468 ID: 304953468 7585. ATAC-Seq F077-C26-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620030 Sample Accession: GSM4953467 ID: 304953467 7586. ATAC-Seq F076-C26-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620029 Sample Accession: GSM4953466 ID: 304953466 7587. ATAC-Seq F075-C26-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620028 Sample Accession: GSM4953465 ID: 304953465 7588. ATAC-Seq F074-C26-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620027 Sample Accession: GSM4953464 ID: 304953464 7589. ATAC-Seq F073-C25-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620026 Sample Accession: GSM4953463 ID: 304953463 7590. ATAC-Seq F072-C25-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620025 Sample Accession: GSM4953462 ID: 304953462 7591. ATAC-Seq F071-C25-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620024 Sample Accession: GSM4953461 ID: 304953461 7592. ATAC-Seq F070-C25-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620023 Sample Accession: GSM4953460 ID: 304953460 7593. ATAC-Seq F069-C24-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620022 Sample Accession: GSM4953459 ID: 304953459 7594. ATAC-Seq F068-C24-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620021 Sample Accession: GSM4953458 ID: 304953458 7595. ATAC-Seq F067-C23-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620020 Sample Accession: GSM4953457 ID: 304953457 7596. ATAC-Seq F066-C23-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620019 Sample Accession: GSM4953456 ID: 304953456 7597. ATAC-Seq F065-C23-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620018 Sample Accession: GSM4953455 ID: 304953455 7598. ATAC-Seq F064-C23-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620017 Sample Accession: GSM4953454 ID: 304953454 7599. ATAC-Seq F063-C22-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620191 Sample Accession: GSM4953453 ID: 304953453 7600. ATAC-Seq F062-C22-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620190 Sample Accession: GSM4953452 ID: 304953452 7601. ATAC-Seq F061-C21-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620189 Sample Accession: GSM4953451 ID: 304953451 7602. ATAC-Seq F060-C21-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620188 Sample Accession: GSM4953450 ID: 304953450 7603. ATAC-Seq F059-C21-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620187 Sample Accession: GSM4953449 ID: 304953449 7604. ATAC-Seq F056-C19-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620186 Sample Accession: GSM4953448 ID: 304953448 7605. ATAC-Seq F055-C19-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620185 Sample Accession: GSM4953447 ID: 304953447 7606. ATAC-Seq F054-C18-M3 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620184 Sample Accession: GSM4953446 ID: 304953446 7607. ATAC-Seq F052-C18-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620183 Sample Accession: GSM4953445 ID: 304953445 7608. ATAC-Seq F051-C18-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620182 Sample Accession: GSM4953444 ID: 304953444 7609. ATAC-Seq F050-C18-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620181 Sample Accession: GSM4953443 ID: 304953443 7610. ATAC-Seq F049-C17-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620180 Sample Accession: GSM4953442 ID: 304953442 7611. ATAC-Seq F048-C17-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620179 Sample Accession: GSM4953441 ID: 304953441 7612. ATAC-Seq F047-C16-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620178 Sample Accession: GSM4953440 ID: 304953440 7613. ATAC-Seq F046-C16-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620177 Sample Accession: GSM4953439 ID: 304953439 7614. ATAC-Seq F045-C15-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620176 Sample Accession: GSM4953438 ID: 304953438 7615. ATAC-Seq F044-C15-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620175 Sample Accession: GSM4953437 ID: 304953437 7616. ATAC-Seq F043-C14-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620174 Sample Accession: GSM4953436 ID: 304953436 7617. ATAC-Seq F042-C13-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620173 Sample Accession: GSM4953435 ID: 304953435 7618. ATAC-Seq F041-C13-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620172 Sample Accession: GSM4953434 ID: 304953434 7619. ATAC-Seq F040-C12-M3 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620171 Sample Accession: GSM4953433 ID: 304953433 7620. ATAC-Seq F039-C12-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620170 Sample Accession: GSM4953432 ID: 304953432 7621. ATAC-Seq F038-C12-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620169 Sample Accession: GSM4953431 ID: 304953431 7622. ATAC-Seq F037-C12-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620168 Sample Accession: GSM4953430 ID: 304953430 7623. ATAC-Seq F036-C12-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620136 Sample Accession: GSM4953429 ID: 304953429 7624. ATAC-Seq F035-C11-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620135 Sample Accession: GSM4953428 ID: 304953428 7625. ATAC-Seq F034-C11-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620134 Sample Accession: GSM4953427 ID: 304953427 7626. ATAC-Seq F033-C11-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620133 Sample Accession: GSM4953426 ID: 304953426 7627. ATAC-Seq F032-C11-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620132 Sample Accession: GSM4953425 ID: 304953425 7628. ATAC-Seq F030-C10-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620131 Sample Accession: GSM4953424 ID: 304953424 7629. ATAC-Seq F029-C10-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620130 Sample Accession: GSM4953423 ID: 304953423 7630. ATAC-Seq F028-C10-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620129 Sample Accession: GSM4953422 ID: 304953422 7631. ATAC-Seq F026-C10-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620128 Sample Accession: GSM4953421 ID: 304953421 7632. ATAC-Seq F025-C9-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620127 Sample Accession: GSM4953420 ID: 304953420 7633. ATAC-Seq F024-C9-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620126 Sample Accession: GSM4953419 ID: 304953419 7634. ATAC-Seq F023-C8-M2 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620125 Sample Accession: GSM4953418 ID: 304953418 7635. ATAC-Seq F022-C8-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620124 Sample Accession: GSM4953417 ID: 304953417 7636. ATAC-Seq F021-C8-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620123 Sample Accession: GSM4953416 ID: 304953416 7637. ATAC-Seq F020-C8-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620122 Sample Accession: GSM4953415 ID: 304953415 7638. ATAC-Seq F019-C7-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620121 Sample Accession: GSM4953414 ID: 304953414 7639. ATAC-Seq F018-C7-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620120 Sample Accession: GSM4953413 ID: 304953413 7640. ATAC-Seq F017-C7-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620119 Sample Accession: GSM4953412 ID: 304953412 7641. ATAC-Seq F014-C5-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620118 Sample Accession: GSM4953411 ID: 304953411 7642. ATAC-Seq F010-C4-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620117 Sample Accession: GSM4953410 ID: 304953410 7643. ATAC-Seq F009-C4-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620116 Sample Accession: GSM4953409 ID: 304953409 7644. ATAC-Seq F007-C3-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620115 Sample Accession: GSM4953408 ID: 304953408 7645. ATAC-Seq F005-C2-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620114 Sample Accession: GSM4953407 ID: 304953407 7646. ATAC-Seq F004-C2-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620113 Sample Accession: GSM4953406 ID: 304953406 7647. ATAC-Seq F003-C1-M1 Organism: Homo sapiens Source name: Cervical LymphNode Metastases Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620016 Sample Accession: GSM4953405 ID: 304953405 7648. ATAC-Seq F002-C1-N1 Organism: Homo sapiens Source name: Normal thyroid Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620015 Sample Accession: GSM4953404 ID: 304953404 7649. ATAC-Seq F001-C1-T1 Organism: Homo sapiens Source name: Thyroid tumor Platform: GPL24676 Series: GSE162515 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9620014 Sample Accession: GSM4953403 ID: 304953403 7650. P0 Lhx6-GFP bulk-ATAC-Seq-Hypothalamus-2 Organism: Mus musculus Source name: P0 Lhx6-GFP bulk-ATAC-Seq-Hypothalamus Platform: GPL17021 Series: GSE150687 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8350408 Sample Accession: GSM4556486 ID: 304556486 7651. P0 Lhx6-GFP bulk-ATAC-Seq-Hypothalamus-1 Organism: Mus musculus Source name: P0 Lhx6-GFP bulk-ATAC-Seq-Hypothalamus Platform: GPL17021 Series: GSE150687 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8350407 Sample Accession: GSM4556485 ID: 304556485 7652. P0 Lhx6-GFP bulk-ATAC-Seq-Cortex-2 Organism: Mus musculus Source name: P0 Lhx6-GFP bulk-ATAC-Seq-Cortex Platform: GPL17021 Series: GSE150687 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8350406 Sample Accession: GSM4556484 ID: 304556484 7653. P0 Lhx6-GFP bulk-ATAC-Seq-Cortex-1 Organism: Mus musculus Source name: P0 Lhx6-GFP bulk-ATAC-Seq-Cortex Platform: GPL17021 Series: GSE150687 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8350405 Sample Accession: GSM4556483 ID: 304556483 7654. E15.5 Lhx6-GFP bulk-ATAC-Seq-Hypothalamus-2 Organism: Mus musculus Source name: E15.5 Lhx6-GFP bulk-ATAC-Seq-Hypothalamus Platform: GPL17021 Series: GSE150687 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8350404 Sample Accession: GSM4556482 ID: 304556482 7655. E15.5 Lhx6-GFP bulk-ATAC-Seq-Hypothalamus-1 Organism: Mus musculus Source name: E15.5 Lhx6-GFP bulk-ATAC-Seq-Hypothalamus Platform: GPL17021 Series: GSE150687 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8350403 Sample Accession: GSM4556481 ID: 304556481 7656. E15.5 Lhx6-GFP bulk-ATAC-Seq-Cortex-2 Organism: Mus musculus Source name: E15.5 Lhx6-GFP bulk-ATAC-Seq-Cortex Platform: GPL17021 Series: GSE150687 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8350402 Sample Accession: GSM4556480 ID: 304556480 7657. E15.5 Lhx6-GFP bulk-ATAC-Seq-Cortex-1 Organism: Mus musculus Source name: E15.5 Lhx6-GFP bulk-ATAC-Seq-Cortex Platform: GPL17021 Series: GSE150687 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8350401 Sample Accession: GSM4556479 ID: 304556479 7658. ATACseq_WT Organism: Mus musculus Source name: B cell Platform: GPL9185 Series: GSE143711 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4809nnn/GSM4809918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9215489 Sample Accession: GSM4809918 ID: 304809918 7659. ATACseq_Homo Organism: Mus musculus Source name: B cell Platform: GPL9185 Series: GSE143711 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4809nnn/GSM4809917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9215488 Sample Accession: GSM4809917 ID: 304809917 7660. hTCEpi_R2 Organism: Homo sapiens Source name: cell line from primary human corneal ketratocytes Platform: GPL11154 Series: GSE150064 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4522nnn/GSM4522961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8288536 Sample Accession: GSM4522961 ID: 304522961 7661. hTCEpi_R1 Organism: Homo sapiens Source name: cell line from primary human corneal ketratocytes Platform: GPL11154 Series: GSE150064 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4522nnn/GSM4522960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8288535 Sample Accession: GSM4522960 ID: 304522960 7662. hTK_R2 Organism: Homo sapiens Source name: cell line from primary human corneal epithelium Platform: GPL11154 Series: GSE150064 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4522nnn/GSM4522959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8288534 Sample Accession: GSM4522959 ID: 304522959 7663. hTK_R1 Organism: Homo sapiens Source name: cell line from primary human corneal epithelium Platform: GPL11154 Series: GSE150064 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4522nnn/GSM4522958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8288533 Sample Accession: GSM4522958 ID: 304522958 7664. iCell_ATAC_KCl-2hr_B3_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, 2hr post-KCl stim, biorep 3, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780852 Sample Accession: GSM4054642 ID: 304054642 7665. iCell_ATAC_KCl-2hr_B2_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, 2hr post-KCl stim, biorep 2, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780851 Sample Accession: GSM4054641 ID: 304054641 7666. iCell_ATAC_KCl-2hr_B1_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, 2hr post-KCl stim, biorep 1, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780850 Sample Accession: GSM4054640 ID: 304054640 7667. iCell_ATAC_KCl-15m_B3_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, 15m post-KCl stim, biorep 3, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780849 Sample Accession: GSM4054639 ID: 304054639 7668. iCell_ATAC_KCl-15m_B2_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, 15m post-KCl stim, biorep 2, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780848 Sample Accession: GSM4054638 ID: 304054638 7669. iCell_ATAC_KCl-15m_B1_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, 15m post-KCl stim, biorep 1, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780847 Sample Accession: GSM4054637 ID: 304054637 7670. iCell_ATAC_KCl-0hr_B3_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, unstimulated, biorep 3, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780846 Sample Accession: GSM4054636 ID: 304054636 7671. iCell_ATAC_KCl-0hr_B2_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, unstimulated, biorep 2, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780845 Sample Accession: GSM4054635 ID: 304054635 7672. iCell_ATAC_KCl-0hr_B1_1 Organism: Homo sapiens Source name: iCell neurons, ATAC-Seq, unstimulated, biorep 1, tech rep 1 Platform: GPL18573 Series: GSE136656 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780844 Sample Accession: GSM4054634 ID: 304054634 7673. ATAC-Seq Cdk6_Knockout_p185_transformed Organism: Mus musculus Source name: BCR-ABL+ cell lines Platform: GPL21103 Series: GSE156966 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4748nnn/GSM4748864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9022291 Sample Accession: GSM4748864 ID: 304748864 7674. ATAC-Seq Cdk6_Wildtype_p185_transformed Organism: Mus musculus Source name: BCR-ABL+ cell lines Platform: GPL21103 Series: GSE156966 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4748nnn/GSM4748863/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9022290 Sample Accession: GSM4748863 ID: 304748863 7675. MONO [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562028/ Sample Accession: GSM3562028 ID: 303562028 7676. GPA [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562027/ Sample Accession: GSM3562027 ID: 303562027 7677. GRA [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562026/ Sample Accession: GSM3562026 ID: 303562026 7678. NK [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562025/ Sample Accession: GSM3562025 ID: 303562025 7679. T [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562024/ Sample Accession: GSM3562024 ID: 303562024 7680. B [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562023/ Sample Accession: GSM3562023 ID: 303562023 7681. DC [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562022/ Sample Accession: GSM3562022 ID: 303562022 7682. MEP [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562021/ Sample Accession: GSM3562021 ID: 303562021 7683. MLP [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562020/ Sample Accession: GSM3562020 ID: 303562020 7684. GMP [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562019/ Sample Accession: GSM3562019 ID: 303562019 7685. CMP [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562018/ Sample Accession: GSM3562018 ID: 303562018 7686. ST_HSC [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562017/ Sample Accession: GSM3562017 ID: 303562017 7687. LT_HSC [ATAC-Seq] Organism: Homo sapiens Source name: human cord blood cells Platform: GPL16791 Series: GSE125060 GSE125064 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3562nnn/GSM3562016/ Sample Accession: GSM3562016 ID: 303562016 7688. ATAC-P17-KO-3 Organism: Mus musculus Source name: Quadriceps muscle Platform: GPL19057 Series: GSE154847 GSE154850 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4681nnn/GSM4681518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8785520 Sample Accession: GSM4681518 ID: 304681518 7689. ATAC-P17-KO-2 Organism: Mus musculus Source name: Quadriceps muscle Platform: GPL19057 Series: GSE154847 GSE154850 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4681nnn/GSM4681517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8785519 Sample Accession: GSM4681517 ID: 304681517 7690. ATAC-P17-KO-1 Organism: Mus musculus Source name: Quadriceps muscle Platform: GPL19057 Series: GSE154847 GSE154850 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4681nnn/GSM4681516/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8785518 Sample Accession: GSM4681516 ID: 304681516 7691. ATAC-P17-WT-3 Organism: Mus musculus Source name: Quadriceps muscle Platform: GPL19057 Series: GSE154847 GSE154850 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4681nnn/GSM4681515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8785517 Sample Accession: GSM4681515 ID: 304681515 7692. ATAC-P17-WT-2 Organism: Mus musculus Source name: Quadriceps muscle Platform: GPL19057 Series: GSE154847 GSE154850 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4681nnn/GSM4681514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8785516 Sample Accession: GSM4681514 ID: 304681514 7693. ATAC-P17-WT-1 Organism: Mus musculus Source name: Quadriceps muscle Platform: GPL19057 Series: GSE154847 GSE154850 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4681nnn/GSM4681513/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8785515 Sample Accession: GSM4681513 ID: 304681513 7694. WTNS_FM_Rep2 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486968 Sample Accession: GSM3962432 ID: 303962432 7695. WTNS_FM_Rep1 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962431/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486967 Sample Accession: GSM3962431 ID: 303962431 7696. WTNS_E2_Rep2 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486966 Sample Accession: GSM3962430 ID: 303962430 7697. WTNS_E2_Rep1 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962429/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486965 Sample Accession: GSM3962429 ID: 303962429 7698. WTNS_DMSO_Rep2 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486964 Sample Accession: GSM3962428 ID: 303962428 7699. WTNS_DMSO_Rep1 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486963 Sample Accession: GSM3962427 ID: 303962427 7700. SY242CS_FM_Rep2 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486962 Sample Accession: GSM3962426 ID: 303962426 7701. SY242CS_FM_Rep1 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962425/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486961 Sample Accession: GSM3962425 ID: 303962425 7702. SY242CS_E2_Rep2 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486960 Sample Accession: GSM3962424 ID: 303962424 7703. SY242CS_E2_Rep1 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486959 Sample Accession: GSM3962423 ID: 303962423 7704. SY242CS_DMSO_Rep2 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486958 Sample Accession: GSM3962422 ID: 303962422 7705. SY242CS_DMSO_Rep1 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486957 Sample Accession: GSM3962421 ID: 303962421 7706. S250F_FM_Rep2 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486956 Sample Accession: GSM3962420 ID: 303962420 7707. S250F_FM_Rep1 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486955 Sample Accession: GSM3962419 ID: 303962419 7708. S250F_E2_Rep2 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486954 Sample Accession: GSM3962418 ID: 303962418 7709. S250F_E2_Rep1 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486953 Sample Accession: GSM3962417 ID: 303962417 7710. S250F_DMSO_Rep2 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486952 Sample Accession: GSM3962416 ID: 303962416 7711. S250F_DMSO_Rep1 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486951 Sample Accession: GSM3962415 ID: 303962415 7712. H247Y_FM_Rep2 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486950 Sample Accession: GSM3962414 ID: 303962414 7713. H247Y_FM_Rep1 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486949 Sample Accession: GSM3962413 ID: 303962413 7714. H247Y_E2_Rep2 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486948 Sample Accession: GSM3962412 ID: 303962412 7715. H247Y_E2_Rep1 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486947 Sample Accession: GSM3962411 ID: 303962411 7716. H247Y_DMSO_Rep2 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486946 Sample Accession: GSM3962410 ID: 303962410 7717. H247Y_DMSO_Rep1 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486945 Sample Accession: GSM3962409 ID: 303962409 7718. F266L_FM_Rep2 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486944 Sample Accession: GSM3962408 ID: 303962408 7719. F266L_FM_Rep1 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486943 Sample Accession: GSM3962407 ID: 303962407 7720. F266L_E2_Rep2 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486942 Sample Accession: GSM3962406 ID: 303962406 7721. F266L_E2_Rep1 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486941 Sample Accession: GSM3962405 ID: 303962405 7722. F266L_DMSO_Rep2 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486940 Sample Accession: GSM3962404 ID: 303962404 7723. F266L_DMSO_Rep1 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486939 Sample Accession: GSM3962403 ID: 303962403 7724. EV_FM_Rep2 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486938 Sample Accession: GSM3962402 ID: 303962402 7725. EV_FM_Rep1 ATAC-Seq Organism: Homo sapiens Source name: Full media Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962401/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486937 Sample Accession: GSM3962401 ID: 303962401 7726. EV_E2_Rep2 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486936 Sample Accession: GSM3962400 ID: 303962400 7727. EV_E2_Rep1 ATAC-Seq Organism: Homo sapiens Source name: E2 1h Induction Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486935 Sample Accession: GSM3962399 ID: 303962399 7728. EV_DMSO_Rep2 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486934 Sample Accession: GSM3962398 ID: 303962398 7729. EV_DMSO_Rep1 ATAC-Seq Organism: Homo sapiens Source name: DMSO control Platform: GPL16791 Series: GSE134654 GSE134657 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3962nnn/GSM3962397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6486933 Sample Accession: GSM3962397 ID: 303962397 7730. ATACseq in EB-Day4[D0+RA+SAG][NoDox] replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies+4D RA+SAG control Platform: GPL19057 Series: GSE142375 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9522140 Sample Accession: GSM4911726 ID: 304911726 7731. ATACseq in EB-Day4[D0+RA+SAG][NoDox] replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies+4D RA+SAG control Platform: GPL19057 Series: GSE142375 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4911nnn/GSM4911725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9522139 Sample Accession: GSM4911725 ID: 304911725 7732. BT12 cells, mithramycin 18h_C, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843204 Sample Accession: GSM4078526 ID: 304078526 7733. BT12 cells, mithramycin 18h_B, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843203 Sample Accession: GSM4078525 ID: 304078525 7734. BT12 cells, mithramycin 18h_A, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843202 Sample Accession: GSM4078524 ID: 304078524 7735. BT12 cells, mithramycin 8h_C, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078523/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843201 Sample Accession: GSM4078523 ID: 304078523 7736. BT12 cells, mithramycin 8h_B, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843200 Sample Accession: GSM4078522 ID: 304078522 7737. BT12 cells, mithramycin 8h_A, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843199 Sample Accession: GSM4078521 ID: 304078521 7738. BT12 cells, Solv_C, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843198 Sample Accession: GSM4078520 ID: 304078520 7739. BT12 cells, Solv_B, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078519/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843197 Sample Accession: GSM4078519 ID: 304078519 7740. BT12 cells, Solv_A, ATAC-seq Organism: Homo sapiens Source name: Atypical Teratoid/Rhabdoid Tumor Platform: GPL18573 Series: GSE137397 GSE137404 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4078nnn/GSM4078518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6843196 Sample Accession: GSM4078518 ID: 304078518 7741. 12d-TNFa treatment+withdraw-10d+12h TNFa, ATAC-seq, rep2 Organism: Homo sapiens Source name: 12d-TNFa treated HEK 293 cells+withdraw-10d+12h-TNFa Platform: GPL24676 Series: GSE152146 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4904nnn/GSM4904187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9486246 Sample Accession: GSM4904187 ID: 304904187 7742. 12d-TNFa treatment+withdraw-10d+12h TNFa, ATAC-seq, rep1 Organism: Homo sapiens Source name: 12d-TNFa treated HEK 293 cells+withdraw-10d+12h-TNFa Platform: GPL24676 Series: GSE152146 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4904nnn/GSM4904186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9486245 Sample Accession: GSM4904186 ID: 304904186 7743. 12d-TNFa treatment+withdraw-10d, ATAC-seq, rep2 Organism: Homo sapiens Source name: 12d-TNFa treated HEK 293 cells+withdraw-10d Platform: GPL24676 Series: GSE152146 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4904nnn/GSM4904185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9486244 Sample Accession: GSM4904185 ID: 304904185 7744. 12d-TNFa treatment+withdraw-10d, ATAC-seq, rep1 Organism: Homo sapiens Source name: 12d-TNFa treated HEK 293 cells+withdraw-10d Platform: GPL24676 Series: GSE152146 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4904nnn/GSM4904184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9486243 Sample Accession: GSM4904184 ID: 304904184 7745. 12h-TNFa treatment, ATAC-seq, rep2 Organism: Homo sapiens Source name: 12h-TNFa treated HEK 293 cells Platform: GPL24676 Series: GSE152146 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4904nnn/GSM4904183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9486242 Sample Accession: GSM4904183 ID: 304904183 7746. 12h-TNFa treatment, ATAC-seq, rep1 Organism: Homo sapiens Source name: 12h-TNFa treated HEK 293 cells Platform: GPL24676 Series: GSE152146 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4904nnn/GSM4904182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9486241 Sample Accession: GSM4904182 ID: 304904182 7747. non-treated control, ATAC-seq, rep2 Organism: Homo sapiens Source name: non-treated HEK 293 Platform: GPL24676 Series: GSE152146 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4904nnn/GSM4904181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9486248 Sample Accession: GSM4904181 ID: 304904181 7748. non-treated control, ATAC-seq, rep1 Organism: Homo sapiens Source name: non-treated HEK 293 Platform: GPL24676 Series: GSE152146 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4904nnn/GSM4904180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9486247 Sample Accession: GSM4904180 ID: 304904180 7749. WT_ChIPseq_H3K27me2me3 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737837 Sample Accession: GSM4672253 ID: 304672253 7750. WT_ChIPseq_hH3-3xFLAG-Input Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737836 Sample Accession: GSM4672252 ID: 304672252 7751. WT_ChIPseq_hH3-3xFLAG-8h Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737835 Sample Accession: GSM4672251 ID: 304672251 7752. WT_ChIPseq_hH3-3xFLAG-0h Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737834 Sample Accession: GSM4672250 ID: 304672250 7753. WT_ChIPseq_H3K9me3 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737833 Sample Accession: GSM4672249 ID: 304672249 7754. WT_ChIPseq_H3K36me3 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737832 Sample Accession: GSM4672248 ID: 304672248 7755. WT_ChIPseq_H3K4me3 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737831 Sample Accession: GSM4672247 ID: 304672247 7756. WT_ChIPseq_H3K4me2 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737830 Sample Accession: GSM4672246 ID: 304672246 7757. WT_ChIPseq_H3K4me1 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737829 Sample Accession: GSM4672245 ID: 304672245 7758. WT_ChIPseq_H3K27ac Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737828 Sample Accession: GSM4672244 ID: 304672244 7759. dWC2_ATACseq_Rep2 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737827 Sample Accession: GSM4672243 ID: 304672243 7760. dWC2_ATACseq_Rep1 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737826 Sample Accession: GSM4672242 ID: 304672242 7761. dHTZ_ATACseq_Rep2 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737825 Sample Accession: GSM4672241 ID: 304672241 7762. dHTZ_ATACseq_Rep1 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737824 Sample Accession: GSM4672240 ID: 304672240 7763. WT_ATACseq_Rep2 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737823 Sample Accession: GSM4672239 ID: 304672239 7764. WT_ ATACseq_Rep1 Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737822 Sample Accession: GSM4672238 ID: 304672238 7765. WT_ATACseq_sortedNuclei Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737821 Sample Accession: GSM4672237 ID: 304672237 7766. WT_ATACseq_unsortedNuclei Organism: Neurospora crassa Source name: Mycelium Platform: GPL20660 Series: GSE154497 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737820 Sample Accession: GSM4672236 ID: 304672236 7767. ATAC-seq activated Treg rep4 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769889 Sample Accession: GSM4677052 ID: 304677052 7768. ATAC-seq activated Treg rep3 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769888 Sample Accession: GSM4677051 ID: 304677051 7769. ATAC-seq activated Treg rep2 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769887 Sample Accession: GSM4677050 ID: 304677050 7770. ATAC-seq activated Treg rep1 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677049/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769886 Sample Accession: GSM4677049 ID: 304677049 7771. ATAC-seq resting Treg rep4 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769885 Sample Accession: GSM4677048 ID: 304677048 7772. ATAC-seq resting Treg rep3 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769884 Sample Accession: GSM4677047 ID: 304677047 7773. ATAC-seq resting Treg rep2 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769883 Sample Accession: GSM4677046 ID: 304677046 7774. ATAC-seq resting Treg rep1 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769882 Sample Accession: GSM4677045 ID: 304677045 7775. ATAC-seq activated Tcon rep4 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769881 Sample Accession: GSM4677044 ID: 304677044 7776. ATAC-seq activated Tcon rep3 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769880 Sample Accession: GSM4677043 ID: 304677043 7777. ATAC-seq activated Tcon rep2 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769879 Sample Accession: GSM4677042 ID: 304677042 7778. ATAC-seq activated Tcon rep1 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769878 Sample Accession: GSM4677041 ID: 304677041 7779. ATAC-seq resting Tcon rep4 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769877 Sample Accession: GSM4677040 ID: 304677040 7780. ATAC-seq resting Tcon rep3 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769876 Sample Accession: GSM4677039 ID: 304677039 7781. ATAC-seq resting Tcon rep2 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769875 Sample Accession: GSM4677038 ID: 304677038 7782. ATAC-seq resting Tcon rep1 Organism: Mus musculus Source name: Foxp3GFP-DTR/Y Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769874 Sample Accession: GSM4677037 ID: 304677037 7783. ATAC-seq activated Foxp3-GFPKO rep3 Organism: Mus musculus Source name: Foxp3GFPKO/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769849 Sample Accession: GSM4677012 ID: 304677012 7784. ATAC-seq activated Foxp3-GFPKO rep2 Organism: Mus musculus Source name: Foxp3GFPKO/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769848 Sample Accession: GSM4677011 ID: 304677011 7785. ATAC-seq activated Foxp3-GFPKO rep1 Organism: Mus musculus Source name: Foxp3GFPKO/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769847 Sample Accession: GSM4677010 ID: 304677010 7786. ATAC-seq activated Treg GFP-DTR/WT rep3 Organism: Mus musculus Source name: Foxp3GFP-DTR/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769846 Sample Accession: GSM4677009 ID: 304677009 7787. ATAC-seq activated Treg GFP-DTR/WT rep2 Organism: Mus musculus Source name: Foxp3GFP-DTR/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769845 Sample Accession: GSM4677008 ID: 304677008 7788. ATAC-seq activated Treg GFP-DTR/WT rep1 Organism: Mus musculus Source name: Foxp3GFP-DTR/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769844 Sample Accession: GSM4677007 ID: 304677007 7789. ATAC-seq resting Foxp3-GFPKO rep2 Organism: Mus musculus Source name: Foxp3GFPKO/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769843 Sample Accession: GSM4677006 ID: 304677006 7790. ATAC-seq resting Foxp3-GFPKO rep1 Organism: Mus musculus Source name: Foxp3GFPKO/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677005/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769842 Sample Accession: GSM4677005 ID: 304677005 7791. ATAC-seq resting Treg GFP-DTR/WT rep3 Organism: Mus musculus Source name: Foxp3GFP-DTR/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769841 Sample Accession: GSM4677004 ID: 304677004 7792. ATAC-seq resting Treg GFP-DTR/WT rep2 Organism: Mus musculus Source name: Foxp3GFP-DTR/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769840 Sample Accession: GSM4677003 ID: 304677003 7793. ATAC-seq resting Treg GFP-DTR/WT rep1 Organism: Mus musculus Source name: Foxp3GFP-DTR/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4677nnn/GSM4677002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769839 Sample Accession: GSM4677002 ID: 304677002 7794. ATAC-seq Tcf7 heterozygous resting Foxp3-GFP-Cre-KO rep3 Organism: Mus musculus Source name: Foxp3ΔEGFPiCre/WT Tcf7fl/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769826 Sample Accession: GSM4676989 ID: 304676989 7795. ATAC-seq Tcf7 heterozygous resting Foxp3-GFP-Cre-KO rep2 Organism: Mus musculus Source name: Foxp3ΔEGFPiCre/WT Tcf7fl/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769825 Sample Accession: GSM4676988 ID: 304676988 7796. ATAC-seq Tcf7 heterozygous resting Foxp3-GFP-Cre-KO rep1 Organism: Mus musculus Source name: Foxp3ΔEGFPiCre/WT Tcf7fl/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769824 Sample Accession: GSM4676987 ID: 304676987 7797. ATAC-seq Wild-type resting Foxp3-GFP-Cre-KO rep3 Organism: Mus musculus Source name: Foxp3ΔEGFPiCre/WT Tcf7WT/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769823 Sample Accession: GSM4676986 ID: 304676986 7798. ATAC-seq Wild-type resting Foxp3-GFP-Cre-KO rep2 Organism: Mus musculus Source name: Foxp3ΔEGFPiCre/WT Tcf7WT/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769822 Sample Accession: GSM4676985 ID: 304676985 7799. ATAC-seq Wild-type resting Foxp3-GFP-Cre-KO rep1 Organism: Mus musculus Source name: Foxp3ΔEGFPiCre/WT Tcf7WT/WT Platform: GPL21103 Series: GSE154680 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8769821 Sample Accession: GSM4676984 ID: 304676984 7800. ATAC-seq for CD127low monocytes D95 Organism: Homo sapiens Source name: Buffy coat Platform: GPL20795 Series: GSE159118 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4819nnn/GSM4819759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9250969 Sample Accession: GSM4819759 ID: 304819759 7801. ATAC-seq for CD127high monocytes D95 Organism: Homo sapiens Source name: Buffy coat Platform: GPL20795 Series: GSE159118 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4819nnn/GSM4819758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9250968 Sample Accession: GSM4819758 ID: 304819758 7802. ATAC-seq for CD127low monocytes D94 Organism: Homo sapiens Source name: Buffy coat Platform: GPL20795 Series: GSE159118 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4819nnn/GSM4819757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9250967 Sample Accession: GSM4819757 ID: 304819757 7803. ATAC-seq for CD127high monocytes D94 Organism: Homo sapiens Source name: Buffy coat Platform: GPL20795 Series: GSE159118 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4819nnn/GSM4819756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9250966 Sample Accession: GSM4819756 ID: 304819756 7804. ATAC-seq for CD127low monocytes D92 Organism: Homo sapiens Source name: Buffy coat Platform: GPL20795 Series: GSE159118 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4819nnn/GSM4819755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9250965 Sample Accession: GSM4819755 ID: 304819755 7805. ATAC-seq for CD127high monocytes D92 Organism: Homo sapiens Source name: Buffy coat Platform: GPL20795 Series: GSE159118 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4819nnn/GSM4819754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9250964 Sample Accession: GSM4819754 ID: 304819754 7806. Dot1L-BKO 2 ATAC-seq Organism: Mus musculus Source name: brown adipose tissue Platform: GPL21103 Series: GSE159645 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9312285 Sample Accession: GSM4836753 ID: 304836753 7807. Dot1L-BKO 1 ATAC-seq Organism: Mus musculus Source name: brown adipose tissue Platform: GPL21103 Series: GSE159645 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9312284 Sample Accession: GSM4836752 ID: 304836752 7808. WT 2 ATAC-seq Organism: Mus musculus Source name: brown adipose tissue Platform: GPL21103 Series: GSE159645 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9312283 Sample Accession: GSM4836750 ID: 304836750 7809. WT 1 ATAC-seq Organism: Mus musculus Source name: brown adipose tissue Platform: GPL21103 Series: GSE159645 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9312282 Sample Accession: GSM4836749 ID: 304836749 7810. ATAC_R61_R3 Organism: Mus musculus Source name: Mice hippocampus Platform: GPL21103 Series: GSE139884 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7098850 Sample Accession: GSM4148201 ID: 304148201 7811. ATAC_R61_R2 Organism: Mus musculus Source name: Mice hippocampus Platform: GPL21103 Series: GSE139884 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7098849 Sample Accession: GSM4148200 ID: 304148200 7812. ATAC_R61_R1 Organism: Mus musculus Source name: Mice hippocampus Platform: GPL21103 Series: GSE139884 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7098848 Sample Accession: GSM4148199 ID: 304148199 7813. ATAC_WT_R3 Organism: Mus musculus Source name: Mice hippocampus Platform: GPL21103 Series: GSE139884 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7098847 Sample Accession: GSM4148198 ID: 304148198 7814. ATAC_WT_R2 Organism: Mus musculus Source name: Mice hippocampus Platform: GPL21103 Series: GSE139884 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7098846 Sample Accession: GSM4148197 ID: 304148197 7815. ATAC_WT_R1 Organism: Mus musculus Source name: Mice hippocampus Platform: GPL21103 Series: GSE139884 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7098845 Sample Accession: GSM4148196 ID: 304148196 7816. ATAC-seq LMNB1-KO Organism: Homo sapiens Source name: MDA-MB-231 breast cancer cells Platform: GPL20795 Series: GSE124409 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4557nnn/GSM4557169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8353673 Sample Accession: GSM4557169 ID: 304557169 7817. ATAC-seq WT Organism: Homo sapiens Source name: MDA-MB-231 breast cancer cells Platform: GPL20795 Series: GSE124409 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4557nnn/GSM4557168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8353672 Sample Accession: GSM4557168 ID: 304557168 7818. P1 ATAC-seq Organism: Homo sapiens Source name: In vitro differentiated human B cells Platform: GPL20301 Series: GSE136989 GSE136990 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6811447 Sample Accession: GSM4064961 ID: 304064961 7819. P2/CD23- ATAC-seq Organism: Homo sapiens Source name: In vitro differentiated human B cells Platform: GPL20301 Series: GSE136989 GSE136990 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6811446 Sample Accession: GSM4064960 ID: 304064960 7820. P2/CD23+ ATAC-seq Organism: Homo sapiens Source name: In vitro differentiated human B cells Platform: GPL20301 Series: GSE136989 GSE136990 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6811445 Sample Accession: GSM4064959 ID: 304064959 7821. D4lo ATAC-seq Organism: Homo sapiens Source name: In vitro differentiated human B cells Platform: GPL20301 Series: GSE136989 GSE136990 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6811444 Sample Accession: GSM4064958 ID: 304064958 7822. K562-Cas9 chromatin remodeling complexes, ATAC-seq library Organism: Homo sapiens Source name: K562-Cas9 cells Platform: GPL16791 Series: GSE161002 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4887nnn/GSM4887679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9451237 Sample Accession: GSM4887679 ID: 304887679 7823. K562-Cas9 cancer chromatin modifiers, ATAC-seq library Organism: Homo sapiens Source name: K562-Cas9 cells Platform: GPL16791 Series: GSE161002 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4887nnn/GSM4887677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9451235 Sample Accession: GSM4887677 ID: 304887677 7824. Species mixing experiment, ATAC-seq library Organism: Mus musculus; Homo sapiens Source name: HEK293T and NIH3T3 cells Platform: GPL19969 Series: GSE161002 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4887nnn/GSM4887675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9451233 Sample Accession: GSM4887675 ID: 304887675 7825. WT mESCs - ATAC-seq Organism: Mus musculus Source name: WT mESCs - ATAC-seq Platform: GPL21626 Series: GSE160816 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4879nnn/GSM4879720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9431028 Sample Accession: GSM4879720 ID: 304879720 7826. RI rep2 [ATAC-seq] Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE160835 GSE160840 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4880nnn/GSM4880206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9432589 Sample Accession: GSM4880206 ID: 304880206 7827. IBET rep2 [ATAC-seq] Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE160835 GSE160840 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4880nnn/GSM4880205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9432588 Sample Accession: GSM4880205 ID: 304880205 7828. RANKL rep2 [ATAC-seq] Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE160835 GSE160840 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4880nnn/GSM4880204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9432587 Sample Accession: GSM4880204 ID: 304880204 7829. Raw rep2 [ATAC-seq] Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE160835 GSE160840 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4880nnn/GSM4880203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9432586 Sample Accession: GSM4880203 ID: 304880203 7830. RI rep1 [ATAC-seq] Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE160835 GSE160840 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4880nnn/GSM4880202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9432585 Sample Accession: GSM4880202 ID: 304880202 7831. RANKL rep1 [ATAC-seq] Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE160835 GSE160840 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4880nnn/GSM4880201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9432584 Sample Accession: GSM4880201 ID: 304880201 7832. Raw rep1 [ATAC-seq] Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE160835 GSE160840 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4880nnn/GSM4880200/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9432583 Sample Accession: GSM4880200 ID: 304880200 7833. ATAC-seq_KHYG1_299_rep2 Organism: Homo sapiens Source name: NK cells Platform: GPL24676 Series: GSE160750 GSE160755 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4878nnn/GSM4878497/ Sample Accession: GSM4878497 ID: 304878497 7834. ATAC-seq_KHYG1_299_rep1 Organism: Homo sapiens Source name: NK cells Platform: GPL24676 Series: GSE160750 GSE160755 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4878nnn/GSM4878496/ Sample Accession: GSM4878496 ID: 304878496 7835. ATAC-seq_KHYG1_DMSO_rep2 Organism: Homo sapiens Source name: NK cells Platform: GPL24676 Series: GSE160750 GSE160755 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4878nnn/GSM4878495/ Sample Accession: GSM4878495 ID: 304878495 7836. ATAC-seq_KHYG1_DMSO_rep1 Organism: Homo sapiens Source name: NK cells Platform: GPL24676 Series: GSE160750 GSE160755 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4878nnn/GSM4878494/ Sample Accession: GSM4878494 ID: 304878494 7837. Ery_d13_UPID27_tech2 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254983 Sample Accession: GSM3564619 ID: 303564619 7838. Ery_d13_UPID27_tech1 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254982 Sample Accession: GSM3564618 ID: 303564618 7839. Ery_d13_UPID26_tech2 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254981 Sample Accession: GSM3564617 ID: 303564617 7840. Ery_d13_UPID26_tech1 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254980 Sample Accession: GSM3564616 ID: 303564616 7841. Ery_d13_UPID25_tech2 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254979 Sample Accession: GSM3564615 ID: 303564615 7842. Ery_d13_UPID25_tech1 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254978 Sample Accession: GSM3564614 ID: 303564614 7843. Ery_d13_UPID22_tech1 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254977 Sample Accession: GSM3564613 ID: 303564613 7844. Ery_d13_UPID20_tech1 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254976 Sample Accession: GSM3564612 ID: 303564612 7845. Ery_d13_UPID16_tech1 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254975 Sample Accession: GSM3564611 ID: 303564611 7846. Ery_d13_UPID06_tech1 Organism: Homo sapiens Source name: Erythroid culture day 13 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254974 Sample Accession: GSM3564610 ID: 303564610 7847. Ery_d11_UPID27_tech2 Organism: Homo sapiens Source name: Erythroid culture day 11 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254973 Sample Accession: GSM3564609 ID: 303564609 7848. Ery_d11_UPID27_tech1 Organism: Homo sapiens Source name: Erythroid culture day 11 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254972 Sample Accession: GSM3564608 ID: 303564608 7849. Ery_d11_UPID26_tech2 Organism: Homo sapiens Source name: Erythroid culture day 11 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254971 Sample Accession: GSM3564607 ID: 303564607 7850. Ery_d11_UPID26_tech1 Organism: Homo sapiens Source name: Erythroid culture day 11 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254970 Sample Accession: GSM3564606 ID: 303564606 7851. Ery_d11_UPID25_tech2 Organism: Homo sapiens Source name: Erythroid culture day 11 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254969 Sample Accession: GSM3564605 ID: 303564605 7852. Ery_d11_UPID25_tech1 Organism: Homo sapiens Source name: Erythroid culture day 11 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254968 Sample Accession: GSM3564604 ID: 303564604 7853. Ery_d10_UPID27_tech2 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254967 Sample Accession: GSM3564603 ID: 303564603 7854. Ery_d10_UPID27_tech1 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254966 Sample Accession: GSM3564602 ID: 303564602 7855. Ery_d10_UPID26_tech2 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254965 Sample Accession: GSM3564601 ID: 303564601 7856. Ery_d10_UPID26_tech1 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254964 Sample Accession: GSM3564599 ID: 303564599 7857. Ery_d10_UPID25_tech2 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254963 Sample Accession: GSM3564598 ID: 303564598 7858. Ery_d10_UPID25_tech1 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254962 Sample Accession: GSM3564596 ID: 303564596 7859. Ery_d10_UPID22_tech1 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254961 Sample Accession: GSM3564595 ID: 303564595 7860. Ery_d10_UPID20_tech1 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254960 Sample Accession: GSM3564593 ID: 303564593 7861. Ery_d10_UPID16_tech1 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254959 Sample Accession: GSM3564592 ID: 303564592 7862. Ery_d10_UPID06_tech1 Organism: Homo sapiens Source name: Erythroid culture day 10 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254958 Sample Accession: GSM3564590 ID: 303564590 7863. Ery_d07_UPID27_tech2 Organism: Homo sapiens Source name: Erythroid culture day 7 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254957 Sample Accession: GSM3564589 ID: 303564589 7864. Ery_d07_UPID27_tech1 Organism: Homo sapiens Source name: Erythroid culture day 7 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254956 Sample Accession: GSM3564587 ID: 303564587 7865. Ery_d07_UPID26_tech2 Organism: Homo sapiens Source name: Erythroid culture day 7 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254955 Sample Accession: GSM3564586 ID: 303564586 7866. Ery_d07_UPID26_tech1 Organism: Homo sapiens Source name: Erythroid culture day 7 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254954 Sample Accession: GSM3564584 ID: 303564584 7867. Ery_d07_UPID25_tech2 Organism: Homo sapiens Source name: Erythroid culture day 7 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254953 Sample Accession: GSM3564583 ID: 303564583 7868. Ery_d07_UPID25_tech1 Organism: Homo sapiens Source name: Erythroid culture day 7 Platform: GPL18573 Series: GSE125175 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254952 Sample Accession: GSM3564581 ID: 303564581 7869. GM12878 ATAC-seq, Tn5-FLAG, Rep 2 Organism: Homo sapiens Source name: GM12878 cells Platform: GPL18573 Series: GSE158346 GSE158350 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4798nnn/GSM4798182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9172079 Sample Accession: GSM4798182 ID: 304798182 7870. GM12878 ATAC-seq, Tn5-FLAG, Rep 1 Organism: Homo sapiens Source name: GM12878 cells Platform: GPL18573 Series: GSE158346 GSE158350 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4798nnn/GSM4798181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9172078 Sample Accession: GSM4798181 ID: 304798181 7871. GM12878 ATAC-seq, Nextera Tn5, Rep 2 Organism: Homo sapiens Source name: GM12878 cells Platform: GPL18573 Series: GSE158346 GSE158350 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4798nnn/GSM4798180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9172077 Sample Accession: GSM4798180 ID: 304798180 7872. GM12878 ATAC-seq, Nextera Tn5, Rep 1 Organism: Homo sapiens Source name: GM12878 cells Platform: GPL18573 Series: GSE158346 GSE158350 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4798nnn/GSM4798179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9172076 Sample Accession: GSM4798179 ID: 304798179 7873. 3 prime HS1 Inverted HUDEP2 clone G3 ATAC-seq Organism: Homo sapiens Source name: Erythroid progenitor Platform: GPL20301 Series: GSE160421 GSE160425 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4873nnn/GSM4873112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9399199 Sample Accession: GSM4873112 ID: 304873112 7874. 3 prime HS1 inverted HUDEP2 clone A2 ATAC-seq Organism: Homo sapiens Source name: Erythroid progenitor Platform: GPL20301 Series: GSE160421 GSE160425 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4873nnn/GSM4873111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9399198 Sample Accession: GSM4873111 ID: 304873111 7875. 3 prime HS1 deleted HUDEP2 clone D3 ATAC-seq Organism: Homo sapiens Source name: Erythroid progenitor Platform: GPL20301 Series: GSE160421 GSE160425 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4873nnn/GSM4873110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9399197 Sample Accession: GSM4873110 ID: 304873110 7876. 3 prime HS1 deleted HUDEP2 clone B6 ATAC-seq Organism: Homo sapiens Source name: Erythroid progenitor Platform: GPL20301 Series: GSE160421 GSE160425 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4873nnn/GSM4873109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9399196 Sample Accession: GSM4873109 ID: 304873109 7877. WT-HUDEP2 cells ATAC-seq Organism: Homo sapiens Source name: Erythroid progenitor Platform: GPL20301 Series: GSE160421 GSE160425 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4873nnn/GSM4873108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9399195 Sample Accession: GSM4873108 ID: 304873108 7878. ATAC_input Organism: Homo sapiens Source name: HeLa cells Platform: GPL18573 Series: GSE150194 GSE150199 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8299217 Sample Accession: GSM4542939 ID: 304542939 7879. ATAC-seq_7_days_washout Organism: Homo sapiens Source name: HeLa cells Platform: GPL18573 Series: GSE150194 GSE150199 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4542nnn/GSM4542938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8299216 Sample Accession: GSM4542938 ID: 304542938 7880. ATAC-seq_2_days_washout Organism: Homo sapiens Source name: HeLa cells Platform: GPL18573 Series: GSE150194 GSE150199 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4542nnn/GSM4542937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8299215 Sample Accession: GSM4542937 ID: 304542937 7881. ATAC-seq_priming Organism: Homo sapiens Source name: HeLa cells Platform: GPL18573 Series: GSE150194 GSE150199 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4542nnn/GSM4542936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8299214 Sample Accession: GSM4542936 ID: 304542936 7882. ATAC-seq_naive Organism: Homo sapiens Source name: HeLa cells Platform: GPL18573 Series: GSE150194 GSE150199 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4542nnn/GSM4542935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8299213 Sample Accession: GSM4542935 ID: 304542935 7883. GM12878 rep3 (ATAC-Seq) Organism: Homo sapiens Source name: GM12878 Platform: GPL24676 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124442 Sample Accession: GSM4156592 ID: 304156592 7884. mouse skin late anagen (ATAC-Seq) Organism: Mus musculus Source name: mouse skin late anagen Platform: GPL24247 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124447 Sample Accession: GSM4156597 ID: 304156597 7885. K562 Raw species mixing human (ATAC-Seq) Organism: Homo sapiens Source name: K562 Raw species mixing human Platform: GPL21697 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124445 Sample Accession: GSM4156595 ID: 304156595 7886. GM12878 3T3 species mixing human (ATAC-Seq) Organism: Homo sapiens Source name: GM12878 3T3 species mixing human Platform: GPL21697 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124443 Sample Accession: GSM4156593 ID: 304156593 7887. GM12878 rep2 (ATAC-Seq) Organism: Homo sapiens Source name: GM12878 Platform: GPL21697 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124441 Sample Accession: GSM4156591 ID: 304156591 7888. GM12878 rep1 (ATAC-Seq) Organism: Homo sapiens Source name: GM12878 Platform: GPL21697 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124440 Sample Accession: GSM4156590 ID: 304156590 7889. mouse lung (ATAC-Seq) Organism: Mus musculus Source name: mouse lung Platform: GPL21626 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124450 Sample Accession: GSM4156600 ID: 304156600 7890. mouse brain (ATAC-Seq) Organism: Mus musculus Source name: mouse brain Platform: GPL21626 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124449 Sample Accession: GSM4156599 ID: 304156599 7891. K562 Raw species mixing mouse (ATAC-Seq) Organism: Mus musculus Source name: K562 Raw species mixing mouse Platform: GPL21626 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124446 Sample Accession: GSM4156596 ID: 304156596 7892. GM12878 3T3 species mixing mouse (ATAC-Seq) Organism: Mus musculus Source name: GM12878 3T3 species mixing mouse Platform: GPL21626 Series: GSE140203 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4156nnn/GSM4156594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7124444 Sample Accession: GSM4156594 ID: 304156594 7893. ATAC-seq_SDHC_KO_vehicle_2 Organism: Mus musculus Source name: immortalized mouse embryonic fibroblast cell line, SDHC KO + vehicle Platform: GPL21103 Series: GSE129956 GSE145754 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4332nnn/GSM4332247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7784191 Sample Accession: GSM4332247 ID: 304332247 7894. ATAC-seq_SDHC_KO_vehicle_1 Organism: Mus musculus Source name: immortalized mouse embryonic fibroblast cell line, SDHC KO + vehicle Platform: GPL21103 Series: GSE129956 GSE145754 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4332nnn/GSM4332246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7784190 Sample Accession: GSM4332246 ID: 304332246 7895. ATAC-seq_SDHC_KO_HATi_2 Organism: Mus musculus Source name: immortalized mouse embryonic fibroblast cell line, SDHC KO + HATi Platform: GPL21103 Series: GSE129956 GSE145754 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4332nnn/GSM4332245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7784189 Sample Accession: GSM4332245 ID: 304332245 7896. ATAC-seq_SDHC_KO_HATi_1 Organism: Mus musculus Source name: immortalized mouse embryonic fibroblast cell line, SDHC KO + HATi Platform: GPL21103 Series: GSE129956 GSE145754 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4332nnn/GSM4332244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7784188 Sample Accession: GSM4332244 ID: 304332244 7897. ATAC-seq_SDHC_KO_3 Organism: Mus musculus Source name: immortalized mouse embryonic fibroblast cell line Platform: GPL21103 Series: GSE129953 GSE129956 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3728nnn/GSM3728537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705536 Sample Accession: GSM3728537 ID: 303728537 7898. ATAC-seq_SDHC_KO_1 Organism: Mus musculus Source name: immortalized mouse embryonic fibroblast cell line Platform: GPL21103 Series: GSE129953 GSE129956 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3728nnn/GSM3728536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705535 Sample Accession: GSM3728536 ID: 303728536 7899. ATAC-seq_Control_2 Organism: Mus musculus Source name: immortalized mouse embryonic fibroblast cell line Platform: GPL21103 Series: GSE129953 GSE129956 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3728nnn/GSM3728535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705534 Sample Accession: GSM3728535 ID: 303728535 7900. ATAC-seq_Control_1 Organism: Mus musculus Source name: immortalized mouse embryonic fibroblast cell line Platform: GPL21103 Series: GSE129953 GSE129956 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3728nnn/GSM3728534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705533 Sample Accession: GSM3728534 ID: 303728534 7901. CASTAT5 tumor CD4+ T cells ATAC-seq Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525399 Sample Accession: GSM4609819 ID: 304609819 7902. Control tumor CD4+ T cells ATAC-seq Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609818/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525398 Sample Accession: GSM4609818 ID: 304609818 7903. CASTAT5 spleen CD4+ T cells ATAC-seq Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525397 Sample Accession: GSM4609817 ID: 304609817 7904. Control spleen CD4+ T cells ATAC-seq Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525396 Sample Accession: GSM4609816 ID: 304609816 7905. CASTAT5 in vitor CD4+ T cells ATAC-seq Organism: Mus musculus Source name: in vitro CASTAT5-transduced CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525395 Sample Accession: GSM4609815 ID: 304609815 7906. Control in vitro CD4+ T cells ATAC-seq Organism: Mus musculus Source name: in vitro activated CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609814/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525394 Sample Accession: GSM4609814 ID: 304609814 7907. CASTAT5 spleen CD4+ T cells ATAC-seq 3 Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525393 Sample Accession: GSM4609813 ID: 304609813 7908. CASTAT5 spleen CD4+ T cells ATAC-seq 2 Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525392 Sample Accession: GSM4609812 ID: 304609812 7909. CASTAT5 spleen CD4+ T cells ATAC-seq 1 Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609811/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525391 Sample Accession: GSM4609811 ID: 304609811 7910. Control spleen CD4+ T cells ATAC-seq 3 Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525390 Sample Accession: GSM4609810 ID: 304609810 7911. Control spleen CD4+ T cells ATAC-seq 2 Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609809/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525389 Sample Accession: GSM4609809 ID: 304609809 7912. Control spleen CD4+ T cells ATAC-seq 1 Organism: Mus musculus Source name: FACS_sorted CD4 T cells Platform: GPL19057 Series: GSE152240 GSE152242 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4609nnn/GSM4609808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8525388 Sample Accession: GSM4609808 ID: 304609808 7913. WT_OPC_ATAC_B Organism: Mus musculus Source name: Oligodendrocyte progenitor cells (OPCs) Platform: GPL21103 Series: GSE143474 GSE155366 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8844229 Sample Accession: GSM4700192 ID: 304700192 7914. WT_OPC_ATAC_A Organism: Mus musculus Source name: Oligodendrocyte progenitor cells (OPCs) Platform: GPL21103 Series: GSE143474 GSE155366 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8844228 Sample Accession: GSM4700191 ID: 304700191 7915. Mac_SSc_Back_F_1183 Organism: Homo sapiens Source name: human macrophage cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884574 Sample Accession: GSM2650714 ID: 302650714 7916. Mac_SSc_Arm_F_1183 Organism: Homo sapiens Source name: human macrophage cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884573 Sample Accession: GSM2650713 ID: 302650713 7917. Mac_SSc_Arm_F_1181 Organism: Homo sapiens Source name: human macrophage cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884572 Sample Accession: GSM2650712 ID: 302650712 7918. Fib_SSc_Back_M_29 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884571 Sample Accession: GSM2650711 ID: 302650711 7919. Fib_SSc_Back_F_1205 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884570 Sample Accession: GSM2650710 ID: 302650710 7920. Fib_SSc_Arm_M_29 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884569 Sample Accession: GSM2650709 ID: 302650709 7921. Fib_SSc_Arm_M_25 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884568 Sample Accession: GSM2650708 ID: 302650708 7922. Fib_SSc_Arm_F_1205 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884567 Sample Accession: GSM2650707 ID: 302650707 7923. Fib_SSc_Arm_F_1202 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884566 Sample Accession: GSM2650706 ID: 302650706 7924. DC_SSc_Back_F_1183 Organism: Homo sapiens Source name: human denditic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884565 Sample Accession: GSM2650705 ID: 302650705 7925. DC_SSc_Back_F_1181 Organism: Homo sapiens Source name: human denditic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884564 Sample Accession: GSM2650704 ID: 302650704 7926. DC_SSc_Arm_M_25_rep2 Organism: Homo sapiens Source name: human denditic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884563 Sample Accession: GSM2650703 ID: 302650703 7927. DC_SSc_Arm_M_25_rep1 Organism: Homo sapiens Source name: human denditic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884562 Sample Accession: GSM2650702 ID: 302650702 7928. DC_SSc_Arm_F_28 Organism: Homo sapiens Source name: human denditic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884561 Sample Accession: GSM2650701 ID: 302650701 7929. DC_SSc_Arm_F_1181 Organism: Homo sapiens Source name: human denditic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884560 Sample Accession: GSM2650700 ID: 302650700 7930. CD8_SSc_Back_M_29_rep2 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884559 Sample Accession: GSM2650699 ID: 302650699 7931. CD8_SSc_Back_M_29_rep1 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884558 Sample Accession: GSM2650698 ID: 302650698 7932. CD8_SSc_Back_M_25 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884557 Sample Accession: GSM2650697 ID: 302650697 7933. CD8_SSc_Back_F_1183 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884556 Sample Accession: GSM2650696 ID: 302650696 7934. CD8_SSc_Arm_M_25_rep2 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884555 Sample Accession: GSM2650695 ID: 302650695 7935. CD8_SSc_Arm_M_25_rep1 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884554 Sample Accession: GSM2650694 ID: 302650694 7936. CD8_SSc_Arm_F_28_rep2 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884553 Sample Accession: GSM2650693 ID: 302650693 7937. CD8_SSc_Arm_F_28_rep1 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884552 Sample Accession: GSM2650692 ID: 302650692 7938. CD8_SSc_Arm_F_1181 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884551 Sample Accession: GSM2650691 ID: 302650691 7939. CD4_SSc_Back_M_29_rep2 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884550 Sample Accession: GSM2650690 ID: 302650690 7940. CD4_SSc_Back_M_29_rep1 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884549 Sample Accession: GSM2650689 ID: 302650689 7941. CD4_SSc_Back_F_1183 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884548 Sample Accession: GSM2650688 ID: 302650688 7942. CD4_SSc_Back_F_1181 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884547 Sample Accession: GSM2650687 ID: 302650687 7943. CD4_SSc_Arm_M_25_rep3 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884546 Sample Accession: GSM2650686 ID: 302650686 7944. CD4_SSc_Arm_M_25_rep2 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884545 Sample Accession: GSM2650685 ID: 302650685 7945. CD4_SSc_Arm_M_25_rep1 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884544 Sample Accession: GSM2650684 ID: 302650684 7946. CD4_SSc_Arm_F_28_rep2 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884543 Sample Accession: GSM2650683 ID: 302650683 7947. CD4_SSc_Arm_F_28_rep1 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884542 Sample Accession: GSM2650682 ID: 302650682 7948. CD4_SSc_Arm_F_1181 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884541 Sample Accession: GSM2650681 ID: 302650681 7949. EC_SSc_Back_F_1205 Organism: Homo sapiens Source name: human endotheliocyte Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884540 Sample Accession: GSM2650680 ID: 302650680 7950. EC_SSc_Arm_F_1205 Organism: Homo sapiens Source name: human endotheliocyte Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884539 Sample Accession: GSM2650679 ID: 302650679 7951. Pericyte_NormSkin_M_27 Organism: Homo sapiens Source name: human pericyte cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884538 Sample Accession: GSM2650678 ID: 302650678 7952. Mac_NormSkin_M_34 Organism: Homo sapiens Source name: human macrophage cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884537 Sample Accession: GSM2650677 ID: 302650677 7953. LC_NormSkin_54 Organism: Homo sapiens Source name: human langerhans cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884536 Sample Accession: GSM2650676 ID: 302650676 7954. LC_NormSkin_51 Organism: Homo sapiens Source name: human langerhans cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884535 Sample Accession: GSM2650675 ID: 302650675 7955. KC_NormSkin_54 Organism: Homo sapiens Source name: human keratinocyte cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884534 Sample Accession: GSM2650674 ID: 302650674 7956. KC_NormSkin_48 Organism: Homo sapiens Source name: human keratinocyte cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884533 Sample Accession: GSM2650673 ID: 302650673 7957. KC_NormSkin_47 Organism: Homo sapiens Source name: human keratinocyte cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884532 Sample Accession: GSM2650672 ID: 302650672 7958. Fib_NormSkin_M_43 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884531 Sample Accession: GSM2650671 ID: 302650671 7959. Fib_NormSkin_M_24 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884530 Sample Accession: GSM2650670 ID: 302650670 7960. Fib_NormSkin_F_44 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884529 Sample Accession: GSM2650669 ID: 302650669 7961. Fib_NormSkin_F_42 Organism: Homo sapiens Source name: human fibroblast cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884528 Sample Accession: GSM2650668 ID: 302650668 7962. DC_NormSkin_M_34 Organism: Homo sapiens Source name: human dendritic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884527 Sample Accession: GSM2650667 ID: 302650667 7963. DC_NormSkin_M_24 Organism: Homo sapiens Source name: human dendritic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884526 Sample Accession: GSM2650666 ID: 302650666 7964. DC_NormSkin_M_21 Organism: Homo sapiens Source name: human dendritic cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884525 Sample Accession: GSM2650665 ID: 302650665 7965. CD8_NormSkin_M_43 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884524 Sample Accession: GSM2650664 ID: 302650664 7966. CD8_NormSkin_M_34 Organism: Homo sapiens Source name: human CD8+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884523 Sample Accession: GSM2650663 ID: 302650663 7967. CD4_NormSkin_M_43 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884522 Sample Accession: GSM2650662 ID: 302650662 7968. CD4_NormSkin_M_34 Organism: Homo sapiens Source name: human CD4+ T cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884521 Sample Accession: GSM2650661 ID: 302650661 7969. EC_NormSkin_M_43 Organism: Homo sapiens Source name: human endotheliocyte Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884520 Sample Accession: GSM2650660 ID: 302650660 7970. EC_NormSkin_F_44 Organism: Homo sapiens Source name: human endotheliocyte cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884519 Sample Accession: GSM2650659 ID: 302650659 7971. EC_NormSkin_F_42 Organism: Homo sapiens Source name: human endotheliocyte cell Platform: GPL11154 Series: GSE99702 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2884518 Sample Accession: GSM2650658 ID: 302650658 7972. Tcf7 Lef1 KO rep2 [ATAC-Seq] Organism: Mus musculus Source name: T follicular helper cells Platform: GPL13112 Series: GSE146421 GSE146428 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4385nnn/GSM4385294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7855811 Sample Accession: GSM4385294 ID: 304385294 7973. Tcf7 Lef1 KO rep1 [ATAC-Seq] Organism: Mus musculus Source name: T follicular helper cells Platform: GPL13112 Series: GSE146421 GSE146428 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4385nnn/GSM4385293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7855810 Sample Accession: GSM4385293 ID: 304385293 7974. WT rep2 [ATAC-Seq] Organism: Mus musculus Source name: T follicular helper cells Platform: GPL13112 Series: GSE146421 GSE146428 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4385nnn/GSM4385292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7855809 Sample Accession: GSM4385292 ID: 304385292 7975. WT rep1 [ATAC-Seq] Organism: Mus musculus Source name: T follicular helper cells Platform: GPL13112 Series: GSE146421 GSE146428 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4385nnn/GSM4385291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7855808 Sample Accession: GSM4385291 ID: 304385291 7976. Mut_G2M_ATAC-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158115 Sample Accession: GSM4491318 ID: 304491318 7977. WT_G2M_ATAC-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158114 Sample Accession: GSM4491317 ID: 304491317 7978. Mut_G1_MNase-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158110 Sample Accession: GSM4491316 ID: 304491316 7979. Mut_BrdU-IP-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158113 Sample Accession: GSM4491315 ID: 304491315 7980. Mut_MCM_ChIP-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158112 Sample Accession: GSM4491314 ID: 304491314 7981. Mut_ORC_ChIP-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158111 Sample Accession: GSM4491313 ID: 304491313 7982. WT_G1_MNase-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158109 Sample Accession: GSM4491312 ID: 304491312 7983. WT_BrdU-IP-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158108 Sample Accession: GSM4491311 ID: 304491311 7984. WT_MCM_ChIP-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158107 Sample Accession: GSM4491310 ID: 304491310 7985. WT_ORC_ChIP-seq Organism: Saccharomyces cerevisiae Source name: budding yeast cells Platform: GPL19756 Series: GSE149163 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4491nnn/GSM4491309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8158106 Sample Accession: GSM4491309 ID: 304491309 7986. ATAC-Seq LIver41_CD49a_neg_stim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183045 Sample Accession: GSM4801596 ID: 304801596 7987. ATAC-Seq LIver41_CD49a_pos_stim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183044 Sample Accession: GSM4801595 ID: 304801595 7988. ATAC-Seq LIver40_CD49a_pos_stim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183043 Sample Accession: GSM4801594 ID: 304801594 7989. ATAC-Seq LIver40_CD49a_neg_stim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183042 Sample Accession: GSM4801593 ID: 304801593 7990. ATAC-Seq LIver39_CD49a_pos_stim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183041 Sample Accession: GSM4801592 ID: 304801592 7991. ATAC-Seq LIver39_CD49a_neg_stim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183040 Sample Accession: GSM4801591 ID: 304801591 7992. ATAC-Seq LIver41_CD49a_pos_unstim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183039 Sample Accession: GSM4801590 ID: 304801590 7993. ATAC-Seq LIver41_CD49a_neg_unstim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183038 Sample Accession: GSM4801589 ID: 304801589 7994. ATAC-Seq LIver40_CD49a_pos_unstim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183037 Sample Accession: GSM4801588 ID: 304801588 7995. ATAC-Seq LIver40_CD49a_neg_unstim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183036 Sample Accession: GSM4801587 ID: 304801587 7996. ATAC-Seq LIver39_CD49a_pos_unstim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183035 Sample Accession: GSM4801586 ID: 304801586 7997. ATAC-Seq LIver39_CD49a_neg_unstim Organism: Homo sapiens Source name: NK cells Platform: GPL21290 Series: GSE158485 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4801nnn/GSM4801585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9183034 Sample Accession: GSM4801585 ID: 304801585 7998. ATAC-SEQ-MONO-rep2 Organism: Homo sapiens Source name: PERIPHERAL MONOCYTES Platform: GPL18573 Series: GSE136216 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4827nnn/GSM4827621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9279231 Sample Accession: GSM4827621 ID: 304827621 7999. ATAC-SEQ-MACRO-rep2 Organism: Homo sapiens Source name: DIFFERENTIATING MACROPHAGES Platform: GPL18573 Series: GSE136216 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4827nnn/GSM4827620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9279230 Sample Accession: GSM4827620 ID: 304827620 8000. ATAC-seq KD_HBVneg_rep2 Organism: Homo sapiens Source name: KD_HBVneg_rep2 Platform: GPL16791 Series: GSE131257 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4818nnn/GSM4818346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9246486 Sample Accession: GSM4818346 ID: 304818346 8001. ATAC-seq KD_HBVneg_rep1 Organism: Homo sapiens Source name: KD_HBVneg_rep1 Platform: GPL16791 Series: GSE131257 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4818nnn/GSM4818345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9246485 Sample Accession: GSM4818345 ID: 304818345 8002. ATAC-seq WT_HBVneg_rep2 Organism: Homo sapiens Source name: WT_HBVneg_rep2 Platform: GPL16791 Series: GSE131257 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4818nnn/GSM4818344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9246484 Sample Accession: GSM4818344 ID: 304818344 8003. ATAC-seq WT_HBVneg_rep1 Organism: Homo sapiens Source name: WT_HBVneg_rep1 Platform: GPL16791 Series: GSE131257 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4818nnn/GSM4818343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9246483 Sample Accession: GSM4818343 ID: 304818343 8004. ATAC-seq - ABa 350 minutes #2 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 350 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845648 Sample Accession: GSM4700941 ID: 304700941 8005. ATAC-seq - ABp 350 minutes #2 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 350 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845647 Sample Accession: GSM4700940 ID: 304700940 8006. ATAC-seq - ABa 200 minutes #2 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 200 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845646 Sample Accession: GSM4700939 ID: 304700939 8007. ATAC-seq - ABp 200 minutes #2 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 200 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845645 Sample Accession: GSM4700938 ID: 304700938 8008. ATAC-seq - ABa 90 minutes #2 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 90 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845644 Sample Accession: GSM4700937 ID: 304700937 8009. ATAC-seq - ABp 90 minutes #2 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 90 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845643 Sample Accession: GSM4700936 ID: 304700936 8010. ATAC-seq - ABp 350 minutes #1 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 350 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845642 Sample Accession: GSM4700935 ID: 304700935 8011. ATAC-seq - ABa 350 minutes #1 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 350 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845641 Sample Accession: GSM4700934 ID: 304700934 8012. ATAC-seq - ABp 200 minutes #1 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 200 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845640 Sample Accession: GSM4700933 ID: 304700933 8013. ATAC-seq - ABa 200 minutes #1 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 200 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845639 Sample Accession: GSM4700932 ID: 304700932 8014. ATAC-seq - ABp 90 minutes #1 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 90 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845638 Sample Accession: GSM4700931 ID: 304700931 8015. ATAC-seq - ABa 90 minutes #1 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 90 minutes Platform: GPL18245 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845637 Sample Accession: GSM4700930 ID: 304700930 8016. ATAC-seq - ASEL/R (delta150) #2 Organism: Caenorhabditis elegans Source name: ASEL/R (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845630 Sample Accession: GSM4700961 ID: 304700961 8017. ATAC-seq - ASEL/R (delta150) #1 Organism: Caenorhabditis elegans Source name: ASEL/R (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845629 Sample Accession: GSM4700960 ID: 304700960 8018. ATAC-seq - ABp 350 minutes (delta150) #2 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 350 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845628 Sample Accession: GSM4700959 ID: 304700959 8019. ATAC-seq - ABa 350 minutes (delta150) #2 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 350 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845627 Sample Accession: GSM4700958 ID: 304700958 8020. ATAC-seq - ABp 350 minutes (delta150) #1 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 350 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845626 Sample Accession: GSM4700957 ID: 304700957 8021. ATAC-seq - ABa 350 minutes (delta150) #1 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 350 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845625 Sample Accession: GSM4700956 ID: 304700956 8022. ATAC-seq - ABp 200 minutes (delta150) #2 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 200 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845624 Sample Accession: GSM4700955 ID: 304700955 8023. ATAC-seq - ABa 200 minutes (delta150) #2 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 200 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845623 Sample Accession: GSM4700954 ID: 304700954 8024. ATAC-seq - ABp 200 minutes (delta150) #1 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 200 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845622 Sample Accession: GSM4700953 ID: 304700953 8025. ATAC-seq - ABa 200 minutes (delta150) #1 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 200 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845621 Sample Accession: GSM4700952 ID: 304700952 8026. ATAC-seq - ABp 90 minutes (delta150) #2 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 90 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845620 Sample Accession: GSM4700951 ID: 304700951 8027. ATAC-seq - ABa 90 minutes (delta150) #2 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 90 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845657 Sample Accession: GSM4700950 ID: 304700950 8028. ATAC-seq - ABp 90 minutes (delta150) #1 Organism: Caenorhabditis elegans Source name: Embryo (ABp) - 90 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845656 Sample Accession: GSM4700949 ID: 304700949 8029. ATAC-seq - ABa 90 minutes (delta150) #1 Organism: Caenorhabditis elegans Source name: Embryo (ABa) - 90 minutes (delta150) Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700948/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845655 Sample Accession: GSM4700948 ID: 304700948 8030. ATAC-seq - ASER #3 Organism: Caenorhabditis elegans Source name: ASER Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845654 Sample Accession: GSM4700947 ID: 304700947 8031. ATAC-seq - ASEL #3 Organism: Caenorhabditis elegans Source name: ASEL Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845653 Sample Accession: GSM4700946 ID: 304700946 8032. ATAC-seq - ASER #2 Organism: Caenorhabditis elegans Source name: ASER Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845652 Sample Accession: GSM4700945 ID: 304700945 8033. ATAC-seq - ASEL #2 Organism: Caenorhabditis elegans Source name: ASEL Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845651 Sample Accession: GSM4700944 ID: 304700944 8034. ATAC-seq - ASER #1 Organism: Caenorhabditis elegans Source name: ASER Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845650 Sample Accession: GSM4700943 ID: 304700943 8035. ATAC-seq - ASEL #1 Organism: Caenorhabditis elegans Source name: ASEL Platform: GPL27998 Series: GSE155392 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4700nnn/GSM4700942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8845649 Sample Accession: GSM4700942 ID: 304700942 8036. 22RV1_DMSO_ATAC_3 Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL18573 Series: GSE156881 GSE156885 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4746nnn/GSM4746071/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9006809 Sample Accession: GSM4746071 ID: 304746071 8037. 22RV1_DMSO_ATAC_2 Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL18573 Series: GSE156881 GSE156885 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4746nnn/GSM4746070/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9006808 Sample Accession: GSM4746070 ID: 304746070 8038. 22RV1_DMSO_ATAC_1 Organism: Homo sapiens Source name: castration resistant prostate cancer Platform: GPL18573 Series: GSE156881 GSE156885 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4746nnn/GSM4746069/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9006807 Sample Accession: GSM4746069 ID: 304746069 8039. D18-270048: OLE1.24M rep3 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722024 Sample Accession: GSM4669124 ID: 304669124 8040. D18-270047: OLE1.24M rep2 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722023 Sample Accession: GSM4669123 ID: 304669123 8041. D18-270046: OLE1.24M rep1 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722022 Sample Accession: GSM4669122 ID: 304669122 8042. D18-270045: DAS2.24M rep3 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722021 Sample Accession: GSM4669121 ID: 304669121 8043. D18-270044: DAS2.24M rep2 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722020 Sample Accession: GSM4669120 ID: 304669120 8044. D18-270043: DAS2.24M rep1 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722019 Sample Accession: GSM4669119 ID: 304669119 8045. D18-270042: AOX1.24M rep3 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722018 Sample Accession: GSM4669118 ID: 304669118 8046. D18-270041: AOX1.24M rep2 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722017 Sample Accession: GSM4669117 ID: 304669117 8047. D18-270040: AOX1.24M rep1 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722016 Sample Accession: GSM4669116 ID: 304669116 8048. D18-270039: WT.24M rep3 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722015 Sample Accession: GSM4669115 ID: 304669115 8049. D18-270038: WT.24M rep2 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722014 Sample Accession: GSM4669114 ID: 304669114 8050. D18-270037: WT.24M rep1 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722013 Sample Accession: GSM4669113 ID: 304669113 8051. D18-270012: OLE1.24G rep3 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722012 Sample Accession: GSM4669112 ID: 304669112 8052. D18-270011: OLE1.24G rep2 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722011 Sample Accession: GSM4669111 ID: 304669111 8053. D18-270010: OLE1.24G rep1 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722010 Sample Accession: GSM4669110 ID: 304669110 8054. D18-270009: DAS2.24G rep3 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722009 Sample Accession: GSM4669109 ID: 304669109 8055. D18-270008: DAS2.24G rep2 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722008 Sample Accession: GSM4669108 ID: 304669108 8056. D18-270007: DAS2.24G rep1 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722007 Sample Accession: GSM4669107 ID: 304669107 8057. D18-270006: AOX1.24G rep3 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722006 Sample Accession: GSM4669106 ID: 304669106 8058. D18-270005: AOX1.24G rep2 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722005 Sample Accession: GSM4669105 ID: 304669105 8059. D18-270004: AOX1.24G rep1 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722004 Sample Accession: GSM4669104 ID: 304669104 8060. D18-270003: WT.24G rep3 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722003 Sample Accession: GSM4669103 ID: 304669103 8061. D18-270002: WT.24G rep2 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722002 Sample Accession: GSM4669102 ID: 304669102 8062. D18-270001: WT.24G rep1 Organism: Komagataella phaffii Source name: bulk yeast cell culture Platform: GPL23539 Series: GSE154330 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8722001 Sample Accession: GSM4669101 ID: 304669101 8063. ATAC-seq_3591T Organism: Homo sapiens Source name: Monocolony HEK293T cell carrying [A/A] genotype at rs4420550. Platform: GPL20795 Series: GSE152177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8517495 Sample Accession: GSM4605467 ID: 304605467 8064. ATAC-seq_3589T Organism: Homo sapiens Source name: Monocolony HEK293T cell carrying [A/A] genotype at rs4420550. Platform: GPL20795 Series: GSE152177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8517494 Sample Accession: GSM4605466 ID: 304605466 8065. ATAC-seq_3015T Organism: Homo sapiens Source name: Monocolony HEK293T cell carrying [A/A] genotype at rs4420550. Platform: GPL20795 Series: GSE152177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8517493 Sample Accession: GSM4605465 ID: 304605465 8066. ATAC-seq_3010T Organism: Homo sapiens Source name: Monocolony HEK293T cell carrying [A/A] genotype at rs4420550. Platform: GPL20795 Series: GSE152177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8517492 Sample Accession: GSM4605464 ID: 304605464 8067. ATAC-seq_3612C Organism: Homo sapiens Source name: Monocolony HEK293T cell edited by CRISPR/cas9 carrying [G/G] genotype at rs4420550. Platform: GPL20795 Series: GSE152177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8517491 Sample Accession: GSM4605463 ID: 304605463 8068. ATAC-seq_3602C Organism: Homo sapiens Source name: Monocolony HEK293T cell edited by CRISPR/cas9 carrying [G/G] genotype at rs4420550. Platform: GPL20795 Series: GSE152177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8517490 Sample Accession: GSM4605462 ID: 304605462 8069. ATAC-seq_3546C Organism: Homo sapiens Source name: Monocolony HEK293T cell edited by CRISPR/cas9 carrying [G/G] genotype at rs4420550. Platform: GPL20795 Series: GSE152177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8517489 Sample Accession: GSM4605461 ID: 304605461 8070. ATAC-seq_3531C Organism: Homo sapiens Source name: Monocolony HEK293T cell edited by CRISPR/cas9 carrying [G/G] genotype at rs4420550. Platform: GPL20795 Series: GSE152177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8517488 Sample Accession: GSM4605460 ID: 304605460 8071. ATAC-skm Organism: Mus musculus Source name: ATAC-seq in mouse skeletal muscle Platform: GPL21103 Series: GSE142796 GSE151790 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4590nnn/GSM4590964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8468924 Sample Accession: GSM4590964 ID: 304590964 8072. ATAC-seq_WT_rep2 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149836 GSE149839 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4514nnn/GSM4514048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245974 Sample Accession: GSM4514048 ID: 304514048 8073. ATAC-seq_WT_rep1 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149836 GSE149839 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4514nnn/GSM4514047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245973 Sample Accession: GSM4514047 ID: 304514047 8074. ATAC-seq_Fli1KO_rep4 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149836 GSE149839 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4514nnn/GSM4514046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245972 Sample Accession: GSM4514046 ID: 304514046 8075. ATAC-seq_Fli1KO_rep3 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149836 GSE149839 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4514nnn/GSM4514045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245971 Sample Accession: GSM4514045 ID: 304514045 8076. ATAC-seq_Fli1KO_rep2 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149836 GSE149839 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4514nnn/GSM4514044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245970 Sample Accession: GSM4514044 ID: 304514044 8077. ATAC-seq_Fli1KO_rep1 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149836 GSE149839 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4514nnn/GSM4514043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245969 Sample Accession: GSM4514043 ID: 304514043 8078. MUT Lm-T4 ATAC-Seq rep2 Organism: Mus musculus Source name: Spleen Platform: GPL13112 Series: GSE152392 GSE152394 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4614nnn/GSM4614265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8538601 Sample Accession: GSM4614265 ID: 304614265 8079. MUT Lm-T4 ATAC-Seq rep1 Organism: Mus musculus Source name: Spleen Platform: GPL13112 Series: GSE152392 GSE152394 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4614nnn/GSM4614264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8538600 Sample Accession: GSM4614264 ID: 304614264 8080. WT Lm-T4 ATAC-Seq rep2 Organism: Mus musculus Source name: Spleen Platform: GPL13112 Series: GSE152392 GSE152394 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4614nnn/GSM4614263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8538599 Sample Accession: GSM4614263 ID: 304614263 8081. WT Lm-T4 ATAC-Seq rep1 Organism: Mus musculus Source name: Spleen Platform: GPL13112 Series: GSE152392 GSE152394 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4614nnn/GSM4614262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8538598 Sample Accession: GSM4614262 ID: 304614262 8082. MUT Lm-N4 ATAC-Seq rep2 Organism: Mus musculus Source name: Spleen Platform: GPL13112 Series: GSE152392 GSE152394 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4614nnn/GSM4614261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8538597 Sample Accession: GSM4614261 ID: 304614261 8083. MUT Lm-N4 ATAC-Seq rep1 Organism: Mus musculus Source name: Spleen Platform: GPL13112 Series: GSE152392 GSE152394 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4614nnn/GSM4614260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8538596 Sample Accession: GSM4614260 ID: 304614260 8084. WT Lm-N4 ATAC-Seq rep2 Organism: Mus musculus Source name: Spleen Platform: GPL13112 Series: GSE152392 GSE152394 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4614nnn/GSM4614259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8538595 Sample Accession: GSM4614259 ID: 304614259 8085. WT Lm-N4 ATAC-Seq rep1 Organism: Mus musculus Source name: Spleen Platform: GPL13112 Series: GSE152392 GSE152394 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4614nnn/GSM4614258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8538594 Sample Accession: GSM4614258 ID: 304614258 8086. WT_oct4_96hr_ATACseq Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL17021 Series: GSE140909 GSE140911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4190nnn/GSM4190161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7208144 Sample Accession: GSM4190161 ID: 304190161 8087. WT_oct4_24hr_ATACseq Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL17021 Series: GSE140909 GSE140911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4190nnn/GSM4190160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7208143 Sample Accession: GSM4190160 ID: 304190160 8088. WT_oct4_8hr_ATACseq Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL17021 Series: GSE140909 GSE140911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4190nnn/GSM4190159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7208142 Sample Accession: GSM4190159 ID: 304190159 8089. WT_oct4_0hr_ATACseq Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL17021 Series: GSE140909 GSE140911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4190nnn/GSM4190158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7208140 Sample Accession: GSM4190158 ID: 304190158 8090. ATAC-seq from Luminal2/BMP k.o CAF-FOXA1 o.e tumor Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262454 Sample Accession: GSM4201676 ID: 304201676 8091. ATAC-seq from Luminal1/BMP k.o CAF-FOXA1 o.e tumor Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262453 Sample Accession: GSM4201675 ID: 304201675 8092. ATAC-seq from Luminal2/BMP k.o CAF Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262452 Sample Accession: GSM4201674 ID: 304201674 8093. ATAC-seq from Luminal1/BMP k.o CAF Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262451 Sample Accession: GSM4201673 ID: 304201673 8094. ATAC-seq from Luminal2/FOXA1 k.o tumor Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262450 Sample Accession: GSM4201672 ID: 304201672 8095. ATAC-seq from Luminal1/FOXA1 k.o tumor Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262449 Sample Accession: GSM4201671 ID: 304201671 8096. ATAC-seq from Luminal2 Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262448 Sample Accession: GSM4201670 ID: 304201670 8097. ATAC-seq from Luminal1 Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262447 Sample Accession: GSM4201669 ID: 304201669 8098. ATAC-seq from Basal2/BMP o.e CAF-FOXA1 k.o tumor Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262446 Sample Accession: GSM4201668 ID: 304201668 8099. ATAC-seq from Basal1/BMP o.e CAF-FOXA1 k.o tumor Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262445 Sample Accession: GSM4201667 ID: 304201667 8100. ATAC-seq from Basal2/BMP o.e CAF Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262444 Sample Accession: GSM4201666 ID: 304201666 8101. ATAC-seq from Basal1/BMP o.e CAF Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262443 Sample Accession: GSM4201665 ID: 304201665 8102. ATAC-seq from Basal2/FOXA1 o.e tumor Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262442 Sample Accession: GSM4201664 ID: 304201664 8103. ATAC-seq from Basal1/FOXA1 o.e tumor Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262441 Sample Accession: GSM4201663 ID: 304201663 8104. ATAC-seq from Basal2 Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262440 Sample Accession: GSM4201662 ID: 304201662 8105. ATAC-seq from Basal1 Organism: Homo sapiens Source name: Human bladder tumor organoid Platform: GPL16791 Series: GSE141351 GSE141356 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4201nnn/GSM4201661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7262439 Sample Accession: GSM4201661 ID: 304201661 8106. day0_3 ATAC-seq Organism: Canis lupus familiaris Source name: MDCKII cells Platform: GPL21400 Series: GSE129822 GSE129824 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5686003 Sample Accession: GSM3722648 ID: 303722648 8107. day0_2 ATAC-seq Organism: Canis lupus familiaris Source name: MDCKII cells Platform: GPL21400 Series: GSE129822 GSE129824 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5686002 Sample Accession: GSM3722647 ID: 303722647 8108. day0_1 ATAC-seq Organism: Canis lupus familiaris Source name: MDCKII cells Platform: GPL21400 Series: GSE129822 GSE129824 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5686001 Sample Accession: GSM3722646 ID: 303722646 8109. 2D_2 ATAC-seq Organism: Canis lupus familiaris Source name: MDCKII cells Platform: GPL21400 Series: GSE129822 GSE129824 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5686000 Sample Accession: GSM3722645 ID: 303722645 8110. 2D_1 ATAC-seq Organism: Canis lupus familiaris Source name: MDCKII cells Platform: GPL21400 Series: GSE129822 GSE129824 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5685999 Sample Accession: GSM3722644 ID: 303722644 8111. 3D_2 ATAC-seq Organism: Canis lupus familiaris Source name: MDCKII cells Platform: GPL21400 Series: GSE129822 GSE129824 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5685998 Sample Accession: GSM3722643 ID: 303722643 8112. 3D_1 ATAC-seq Organism: Canis lupus familiaris Source name: MDCKII cells Platform: GPL21400 Series: GSE129822 GSE129824 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5685997 Sample Accession: GSM3722642 ID: 303722642 8113. ATAC-seq from UC Davis FAANG pig spleen rep P350 Organism: Sus scrofa Source name: Spleen Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176805 Sample Accession: GSM4799636 ID: 304799636 8114. ATAC-seq from UC Davis FAANG pig spleen rep P348 Organism: Sus scrofa Source name: Spleen Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176804 Sample Accession: GSM4799635 ID: 304799635 8115. ATAC-seq from UC Davis FAANG pig skeletal muscle rep P350 Organism: Sus scrofa Source name: Muscle Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176801 Sample Accession: GSM4799632 ID: 304799632 8116. ATAC-seq from UC Davis FAANG pig skeletal muscle rep P348 Organism: Sus scrofa Source name: Muscle Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176800 Sample Accession: GSM4799631 ID: 304799631 8117. ATAC-seq from UC Davis FAANG pig lung rep P350 Organism: Sus scrofa Source name: Lung Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176797 Sample Accession: GSM4799628 ID: 304799628 8118. ATAC-seq from UC Davis FAANG pig lung rep P348 Organism: Sus scrofa Source name: Lung Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176796 Sample Accession: GSM4799627 ID: 304799627 8119. ATAC-seq from UC Davis FAANG pig liver rep P350 Organism: Sus scrofa Source name: Liver Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176793 Sample Accession: GSM4799624 ID: 304799624 8120. ATAC-seq from UC Davis FAANG pig liver rep P348 Organism: Sus scrofa Source name: Liver Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176792 Sample Accession: GSM4799623 ID: 304799623 8121. ATAC-seq from UC Davis FAANG pig hypothalamus rep P350 Organism: Sus scrofa Source name: Hypothalamus Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176789 Sample Accession: GSM4799620 ID: 304799620 8122. ATAC-seq from UC Davis FAANG pig hypothalamus rep P348 Organism: Sus scrofa Source name: Hypothalamus Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176788 Sample Accession: GSM4799619 ID: 304799619 8123. ATAC-seq from UC Davis FAANG pig cerebral cortex rep P350 Organism: Sus scrofa Source name: Cortex Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176785 Sample Accession: GSM4799616 ID: 304799616 8124. ATAC-seq from UC Davis FAANG pig cerebral cortex rep P348 Organism: Sus scrofa Source name: Cortex Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176784 Sample Accession: GSM4799615 ID: 304799615 8125. ATAC-seq from UC Davis FAANG pig cerebellum rep P350 Organism: Sus scrofa Source name: Cerebellum Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176781 Sample Accession: GSM4799612 ID: 304799612 8126. ATAC-seq from UC Davis FAANG pig cerebellum rep P348 Organism: Sus scrofa Source name: Cerebellum Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176780 Sample Accession: GSM4799611 ID: 304799611 8127. ATAC-seq from UC Davis FAANG pig adipose rep P350 Organism: Sus scrofa Source name: Adipose Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176778 Sample Accession: GSM4799609 ID: 304799609 8128. ATAC-seq from UC Davis FAANG pig adipose rep P348 Organism: Sus scrofa Source name: Adipose Platform: GPL29175 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176777 Sample Accession: GSM4799608 ID: 304799608 8129. ATAC-seq from UC Davis FAANG cattle spleen rep M22 Organism: Bos taurus Source name: Spleen Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176803 Sample Accession: GSM4799634 ID: 304799634 8130. ATAC-seq from UC Davis FAANG cattle spleen rep M08 Organism: Bos taurus Source name: Spleen Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176802 Sample Accession: GSM4799633 ID: 304799633 8131. ATAC-seq from UC Davis FAANG cattle skeletal muscle rep M22 Organism: Bos taurus Source name: Muscle Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176799 Sample Accession: GSM4799630 ID: 304799630 8132. ATAC-seq from UC Davis FAANG cattle skeletal muscle rep M08 Organism: Bos taurus Source name: Muscle Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176798 Sample Accession: GSM4799629 ID: 304799629 8133. ATAC-seq from UC Davis FAANG cattle lung rep M22 Organism: Bos taurus Source name: Lung Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176795 Sample Accession: GSM4799626 ID: 304799626 8134. ATAC-seq from UC Davis FAANG cattle lung rep M08 Organism: Bos taurus Source name: Lung Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176794 Sample Accession: GSM4799625 ID: 304799625 8135. ATAC-seq from UC Davis FAANG cattle liver rep M22 Organism: Bos taurus Source name: Liver Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176791 Sample Accession: GSM4799622 ID: 304799622 8136. ATAC-seq from UC Davis FAANG cattle liver rep M08 Organism: Bos taurus Source name: Liver Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176790 Sample Accession: GSM4799621 ID: 304799621 8137. ATAC-seq from UC Davis FAANG cattle hypothalamus rep M22 Organism: Bos taurus Source name: Hypothalamus Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176787 Sample Accession: GSM4799618 ID: 304799618 8138. ATAC-seq from UC Davis FAANG cattle hypothalamus rep M08 Organism: Bos taurus Source name: Hypothalamus Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176786 Sample Accession: GSM4799617 ID: 304799617 8139. ATAC-seq from UC Davis FAANG cattle cerebral cortex rep M22 Organism: Bos taurus Source name: Cortex Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176783 Sample Accession: GSM4799614 ID: 304799614 8140. ATAC-seq from UC Davis FAANG cattle cerebral cortex rep M08 Organism: Bos taurus Source name: Cortex Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176782 Sample Accession: GSM4799613 ID: 304799613 8141. ATAC-seq from UC Davis FAANG cattle cerebellum rep M22 Organism: Bos taurus Source name: Cerebellum Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176779 Sample Accession: GSM4799610 ID: 304799610 8142. ATAC-seq from UC Davis FAANG cattle adipose rep M22 Organism: Bos taurus Source name: Adipose Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176776 Sample Accession: GSM4799607 ID: 304799607 8143. ATAC-seq from UC Davis FAANG cattle adipose rep M08 Organism: Bos taurus Source name: Adipose Platform: GPL27907 Series: GSE158414 GSE158430 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4799nnn/GSM4799606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9176775 Sample Accession: GSM4799606 ID: 304799606 8144. Treatment Patient 3 [ATAC-Seq] Organism: Homo sapiens Source name: Endometrial mesenchyme stem cells Platform: GPL18460 Series: GSE146065 GSE146067 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7815161 Sample Accession: GSM4363908 ID: 304363908 8145. Treatment Patient 2 [ATAC-Seq] Organism: Homo sapiens Source name: Endometrial mesenchyme stem cells Platform: GPL18460 Series: GSE146065 GSE146067 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7815160 Sample Accession: GSM4363907 ID: 304363907 8146. Treatment Patient 1 [ATAC-Seq] Organism: Homo sapiens Source name: Endometrial mesenchyme stem cells Platform: GPL18460 Series: GSE146065 GSE146067 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7815159 Sample Accession: GSM4363906 ID: 304363906 8147. Control Patient 3 [ATAC-Seq] Organism: Homo sapiens Source name: Endometrial mesenchyme stem cells Platform: GPL18460 Series: GSE146065 GSE146067 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7815158 Sample Accession: GSM4363905 ID: 304363905 8148. Control Patient 2 [ATAC-Seq] Organism: Homo sapiens Source name: Endometrial mesenchyme stem cells Platform: GPL18460 Series: GSE146065 GSE146067 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7815157 Sample Accession: GSM4363904 ID: 304363904 8149. Control Patient 1 [ATAC-Seq] Organism: Homo sapiens Source name: Endometrial mesenchyme stem cells Platform: GPL18460 Series: GSE146065 GSE146067 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7815156 Sample Accession: GSM4363903 ID: 304363903 8150. T-cell_ATAC_seq_rep2 Organism: Homo sapiens Source name: Human primary CD4/CD8 T cells Platform: GPL20301 Series: GSE149361 GSE149363 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8177653 Sample Accession: GSM4498612 ID: 304498612 8151. T-cell_ATAC_seq_rep1 Organism: Homo sapiens Source name: Human primary CD4/CD8 T cells Platform: GPL20301 Series: GSE149361 GSE149363 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4498nnn/GSM4498611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8177652 Sample Accession: GSM4498611 ID: 304498611 8152. TGFb12h, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: NMuMG_TGFb12h Platform: GPL19057 Series: GSE140548 GSE140552 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7175372 Sample Accession: GSM4174024 ID: 304174024 8153. TGFb12h, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: NMuMG_TGFb12h Platform: GPL19057 Series: GSE140548 GSE140552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4174nnn/GSM4174023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7175371 Sample Accession: GSM4174023 ID: 304174023 8154. TGFb2h, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: NMuMG_TGFb2h Platform: GPL19057 Series: GSE140548 GSE140552 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7175370 Sample Accession: GSM4174022 ID: 304174022 8155. TGFb2h, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: NMuMG_TGFb2h Platform: GPL19057 Series: GSE140548 GSE140552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4174nnn/GSM4174021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7175369 Sample Accession: GSM4174021 ID: 304174021 8156. veh, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: NMuMG_vehicle Platform: GPL19057 Series: GSE140548 GSE140552 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7175368 Sample Accession: GSM4174020 ID: 304174020 8157. veh, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: NMuMG_vehicle Platform: GPL19057 Series: GSE140548 GSE140552 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4174nnn/GSM4174019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7175367 Sample Accession: GSM4174019 ID: 304174019 8158. IMIQpDC_omni_D8_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902890 Sample Accession: GSM4409174 ID: 304409174 8159. IMIQpDC_omni_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902889 Sample Accession: GSM4409173 ID: 304409173 8160. IMIQpDC_omni_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902888 Sample Accession: GSM4409172 ID: 304409172 8161. IMIQpDC_omni_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902887 Sample Accession: GSM4409171 ID: 304409171 8162. CD40LpDC_omni_D8_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902886 Sample Accession: GSM4409170 ID: 304409170 8163. CD40LpDC_omni_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902885 Sample Accession: GSM4409169 ID: 304409169 8164. CD40LpDC_omni_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902884 Sample Accession: GSM4409168 ID: 304409168 8165. CD40LpDC_omni_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902883 Sample Accession: GSM4409167 ID: 304409167 8166. CD11chitDC_omni_D8_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902882 Sample Accession: GSM4409166 ID: 304409166 8167. CD11chitDC_omni_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902881 Sample Accession: GSM4409165 ID: 304409165 8168. CD11chitDC_omni_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902880 Sample Accession: GSM4409164 ID: 304409164 8169. CD11chitDC_omni_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902879 Sample Accession: GSM4409163 ID: 304409163 8170. CD11clotDC_omni_D8_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902878 Sample Accession: GSM4409162 ID: 304409162 8171. CD11clotDC_omni_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902877 Sample Accession: GSM4409161 ID: 304409161 8172. CD11clotDC_omni_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902876 Sample Accession: GSM4409160 ID: 304409160 8173. CD11clotDC_omni_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902875 Sample Accession: GSM4409159 ID: 304409159 8174. pDC_omni_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902874 Sample Accession: GSM4409158 ID: 304409158 8175. pDC_omni_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902873 Sample Accession: GSM4409157 ID: 304409157 8176. pDC_omni_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902872 Sample Accession: GSM4409156 ID: 304409156 8177. Mono_D7_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902871 Sample Accession: GSM4409155 ID: 304409155 8178. Mono_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902870 Sample Accession: GSM4409154 ID: 304409154 8179. Mono_D5_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902869 Sample Accession: GSM4409153 ID: 304409153 8180. Mono_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902868 Sample Accession: GSM4409152 ID: 304409152 8181. Mono_D3_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902867 Sample Accession: GSM4409151 ID: 304409151 8182. Mono_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902866 Sample Accession: GSM4409150 ID: 304409150 8183. Mono_D2_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902865 Sample Accession: GSM4409149 ID: 304409149 8184. Mono_D2_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902864 Sample Accession: GSM4409148 ID: 304409148 8185. Mono_D1_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902863 Sample Accession: GSM4409147 ID: 304409147 8186. Mono_D1_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902862 Sample Accession: GSM4409146 ID: 304409146 8187. cDC2_D7_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902861 Sample Accession: GSM4409145 ID: 304409145 8188. cDC2_D7_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902860 Sample Accession: GSM4409144 ID: 304409144 8189. cDC2_D6_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902859 Sample Accession: GSM4409143 ID: 304409143 8190. cDC2_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902858 Sample Accession: GSM4409142 ID: 304409142 8191. cDC2_D5_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902857 Sample Accession: GSM4409141 ID: 304409141 8192. cDC2_D5_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902856 Sample Accession: GSM4409140 ID: 304409140 8193. cDC2_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902855 Sample Accession: GSM4409139 ID: 304409139 8194. cDC2_D3_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902854 Sample Accession: GSM4409138 ID: 304409138 8195. cDC2_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902853 Sample Accession: GSM4409137 ID: 304409137 8196. cDC2_D2_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902852 Sample Accession: GSM4409136 ID: 304409136 8197. cDC2_D2_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902851 Sample Accession: GSM4409135 ID: 304409135 8198. cDC2_D1_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902850 Sample Accession: GSM4409134 ID: 304409134 8199. cDC2_D1_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902849 Sample Accession: GSM4409133 ID: 304409133 8200. cDC1_D7_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902848 Sample Accession: GSM4409132 ID: 304409132 8201. cDC1_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902847 Sample Accession: GSM4409131 ID: 304409131 8202. cDC1_D5_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902846 Sample Accession: GSM4409130 ID: 304409130 8203. cDC1_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902845 Sample Accession: GSM4409129 ID: 304409129 8204. cDC1_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902844 Sample Accession: GSM4409128 ID: 304409128 8205. cDC1_D2_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409127/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902843 Sample Accession: GSM4409127 ID: 304409127 8206. cDC1_D2_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902842 Sample Accession: GSM4409126 ID: 304409126 8207. pDC_D7_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902841 Sample Accession: GSM4409125 ID: 304409125 8208. pDC_D7_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902840 Sample Accession: GSM4409124 ID: 304409124 8209. pDC_D6_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902839 Sample Accession: GSM4409123 ID: 304409123 8210. pDC_D6_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902838 Sample Accession: GSM4409122 ID: 304409122 8211. pDC_D5_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902837 Sample Accession: GSM4409121 ID: 304409121 8212. pDC_D5_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902836 Sample Accession: GSM4409120 ID: 304409120 8213. pDC_D4_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902835 Sample Accession: GSM4409119 ID: 304409119 8214. pDC_D4_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902834 Sample Accession: GSM4409118 ID: 304409118 8215. pDC_D3_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902833 Sample Accession: GSM4409117 ID: 304409117 8216. pDC_D3_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902832 Sample Accession: GSM4409116 ID: 304409116 8217. pDC_D2_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902831 Sample Accession: GSM4409115 ID: 304409115 8218. pDC_D2_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902830 Sample Accession: GSM4409114 ID: 304409114 8219. pDC_D1_rep2 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902829 Sample Accession: GSM4409113 ID: 304409113 8220. pDC_D1_rep1 Organism: Homo sapiens Source name: peripheral blood mononuclear cells Platform: GPL18573 Series: GSE146896 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4409nnn/GSM4409112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7902828 Sample Accession: GSM4409112 ID: 304409112 8221. Repolarization: 72h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137926 Sample Accession: GSM4792170 ID: 304792170 8222. Repolarization: 72h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137925 Sample Accession: GSM4792169 ID: 304792169 8223. Repolarization: 72h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137924 Sample Accession: GSM4792168 ID: 304792168 8224. Repolarization: 72h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137923 Sample Accession: GSM4792167 ID: 304792167 8225. Repolarization: 72h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137922 Sample Accession: GSM4792166 ID: 304792166 8226. Repolarization: 72h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137921 Sample Accession: GSM4792165 ID: 304792165 8227. Repolarization: 72h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137920 Sample Accession: GSM4792164 ID: 304792164 8228. Repolarization: 72h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137919 Sample Accession: GSM4792163 ID: 304792163 8229. Repolarization: 72h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137918 Sample Accession: GSM4792162 ID: 304792162 8230. Repolarization: 72h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137917 Sample Accession: GSM4792161 ID: 304792161 8231. Repolarization: 72h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137916 Sample Accession: GSM4792160 ID: 304792160 8232. Repolarization: 72h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137915 Sample Accession: GSM4792159 ID: 304792159 8233. Repolarization: 72h M2→M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137914 Sample Accession: GSM4792158 ID: 304792158 8234. Repolarization: 72h M2→M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137913 Sample Accession: GSM4792157 ID: 304792157 8235. Repolarization: 72h M2→M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137912 Sample Accession: GSM4792156 ID: 304792156 8236. Repolarization: 72h M1→M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137831 Sample Accession: GSM4792155 ID: 304792155 8237. Repolarization: 72h M1→M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137830 Sample Accession: GSM4792154 ID: 304792154 8238. Repolarization: 72h M1→M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137829 Sample Accession: GSM4792153 ID: 304792153 8239. Repolarization: 72h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 4 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137828 Sample Accession: GSM4792152 ID: 304792152 8240. Repolarization: 72h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137827 Sample Accession: GSM4792151 ID: 304792151 8241. Repolarization: 72h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137826 Sample Accession: GSM4792150 ID: 304792150 8242. Repolarization: 72h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137825 Sample Accession: GSM4792149 ID: 304792149 8243. Repolarization: 24h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137824 Sample Accession: GSM4792148 ID: 304792148 8244. Repolarization: 24h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137823 Sample Accession: GSM4792147 ID: 304792147 8245. Repolarization: 24h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137822 Sample Accession: GSM4792146 ID: 304792146 8246. Repolarization: 24h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137821 Sample Accession: GSM4792145 ID: 304792145 8247. Repolarization: 24h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137820 Sample Accession: GSM4792144 ID: 304792144 8248. Repolarization: 24h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137819 Sample Accession: GSM4792143 ID: 304792143 8249. Repolarization: 24h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137818 Sample Accession: GSM4792142 ID: 304792142 8250. Repolarization: 24h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137817 Sample Accession: GSM4792141 ID: 304792141 8251. Repolarization: 24h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137816 Sample Accession: GSM4792140 ID: 304792140 8252. Repolarization: 24h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137863 Sample Accession: GSM4792139 ID: 304792139 8253. Repolarization: 24h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137862 Sample Accession: GSM4792138 ID: 304792138 8254. Repolarization: 24h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137861 Sample Accession: GSM4792137 ID: 304792137 8255. Repolarization: 24h M2→M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137860 Sample Accession: GSM4792136 ID: 304792136 8256. Repolarization: 24h M2→M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137859 Sample Accession: GSM4792135 ID: 304792135 8257. Repolarization: 24h M2→M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137858 Sample Accession: GSM4792134 ID: 304792134 8258. Repolarization: 24h M1→M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137857 Sample Accession: GSM4792133 ID: 304792133 8259. Repolarization: 24h M1→M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137856 Sample Accession: GSM4792132 ID: 304792132 8260. Repolarization: 24h M1→M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137855 Sample Accession: GSM4792131 ID: 304792131 8261. Repolarization: 24h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137854 Sample Accession: GSM4792130 ID: 304792130 8262. Repolarization: 24h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137853 Sample Accession: GSM4792129 ID: 304792129 8263. Repolarization: 12h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137852 Sample Accession: GSM4792128 ID: 304792128 8264. Repolarization: 12h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137851 Sample Accession: GSM4792127 ID: 304792127 8265. Repolarization: 12h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137850 Sample Accession: GSM4792126 ID: 304792126 8266. Repolarization: 12h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137849 Sample Accession: GSM4792125 ID: 304792125 8267. Repolarization: 12h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137848 Sample Accession: GSM4792124 ID: 304792124 8268. Repolarization: 12h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137879 Sample Accession: GSM4792123 ID: 304792123 8269. Repolarization: 12h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137878 Sample Accession: GSM4792122 ID: 304792122 8270. Repolarization: 12h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137877 Sample Accession: GSM4792121 ID: 304792121 8271. Repolarization: 12h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137876 Sample Accession: GSM4792120 ID: 304792120 8272. Repolarization: 12h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137875 Sample Accession: GSM4792119 ID: 304792119 8273. Repolarization: 12h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137874 Sample Accession: GSM4792118 ID: 304792118 8274. Repolarization: 12h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137873 Sample Accession: GSM4792117 ID: 304792117 8275. Repolarization: 6h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137872 Sample Accession: GSM4792116 ID: 304792116 8276. Repolarization: 6h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137871 Sample Accession: GSM4792115 ID: 304792115 8277. Repolarization: 6h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137870 Sample Accession: GSM4792114 ID: 304792114 8278. Repolarization: 6h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137869 Sample Accession: GSM4792113 ID: 304792113 8279. Repolarization: 6h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137868 Sample Accession: GSM4792112 ID: 304792112 8280. Repolarization: 6h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137867 Sample Accession: GSM4792111 ID: 304792111 8281. Repolarization: 6h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137866 Sample Accession: GSM4792110 ID: 304792110 8282. Repolarization: 6h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137865 Sample Accession: GSM4792109 ID: 304792109 8283. Repolarization: 6h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137864 Sample Accession: GSM4792108 ID: 304792108 8284. Repolarization: 6h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137911 Sample Accession: GSM4792107 ID: 304792107 8285. Repolarization: 6h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137910 Sample Accession: GSM4792106 ID: 304792106 8286. Repolarization: 6h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137909 Sample Accession: GSM4792105 ID: 304792105 8287. Repolarization: 4h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 4 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137908 Sample Accession: GSM4792104 ID: 304792104 8288. Repolarization: 4h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137907 Sample Accession: GSM4792103 ID: 304792103 8289. Repolarization: 4h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137906 Sample Accession: GSM4792102 ID: 304792102 8290. Repolarization: 4h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137905 Sample Accession: GSM4792101 ID: 304792101 8291. Repolarization: 4h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137904 Sample Accession: GSM4792100 ID: 304792100 8292. Repolarization: 4h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137903 Sample Accession: GSM4792099 ID: 304792099 8293. Repolarization: 4h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137902 Sample Accession: GSM4792098 ID: 304792098 8294. Repolarization: 4h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137901 Sample Accession: GSM4792097 ID: 304792097 8295. Repolarization: 4h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137900 Sample Accession: GSM4792096 ID: 304792096 8296. Repolarization: 4h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137899 Sample Accession: GSM4792095 ID: 304792095 8297. Repolarization: 4h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137898 Sample Accession: GSM4792094 ID: 304792094 8298. Repolarization: 4h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137897 Sample Accession: GSM4792093 ID: 304792093 8299. Repolarization: 4h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137896 Sample Accession: GSM4792092 ID: 304792092 8300. Repolarization: 2h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137942 Sample Accession: GSM4792091 ID: 304792091 8301. Repolarization: 2h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137941 Sample Accession: GSM4792090 ID: 304792090 8302. Repolarization: 2h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137940 Sample Accession: GSM4792089 ID: 304792089 8303. Repolarization: 2h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137939 Sample Accession: GSM4792088 ID: 304792088 8304. Repolarization: 2h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137938 Sample Accession: GSM4792087 ID: 304792087 8305. Repolarization: 2h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137937 Sample Accession: GSM4792086 ID: 304792086 8306. Repolarization: 2h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137936 Sample Accession: GSM4792085 ID: 304792085 8307. Repolarization: 2h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137935 Sample Accession: GSM4792084 ID: 304792084 8308. Repolarization: 2h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137934 Sample Accession: GSM4792083 ID: 304792083 8309. Repolarization: 2h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137933 Sample Accession: GSM4792082 ID: 304792082 8310. Repolarization: 2h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137932 Sample Accession: GSM4792081 ID: 304792081 8311. Repolarization: 2h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137931 Sample Accession: GSM4792080 ID: 304792080 8312. Repolarization: 1h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137930 Sample Accession: GSM4792079 ID: 304792079 8313. Repolarization: 1h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137929 Sample Accession: GSM4792078 ID: 304792078 8314. Repolarization: 1h M2→M1-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137928 Sample Accession: GSM4792077 ID: 304792077 8315. Repolarization: 1h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137927 Sample Accession: GSM4792076 ID: 304792076 8316. Repolarization: 1h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137847 Sample Accession: GSM4792075 ID: 304792075 8317. Repolarization: 1h M1→M2-repolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137846 Sample Accession: GSM4792074 ID: 304792074 8318. Repolarization: 1h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137845 Sample Accession: GSM4792073 ID: 304792073 8319. Repolarization: 1h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137844 Sample Accession: GSM4792072 ID: 304792072 8320. Repolarization: 1h M2→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137843 Sample Accession: GSM4792071 ID: 304792071 8321. Repolarization: 1h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137842 Sample Accession: GSM4792070 ID: 304792070 8322. Repolarization: 1h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137841 Sample Accession: GSM4792069 ID: 304792069 8323. Repolarization: 1h M1→M0-depolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137840 Sample Accession: GSM4792068 ID: 304792068 8324. Polarization: 24h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137839 Sample Accession: GSM4792067 ID: 304792067 8325. Polarization: 24h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137838 Sample Accession: GSM4792066 ID: 304792066 8326. Polarization: 24h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137837 Sample Accession: GSM4792065 ID: 304792065 8327. Polarization: 24h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137836 Sample Accession: GSM4792064 ID: 304792064 8328. Polarization: 24h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137835 Sample Accession: GSM4792063 ID: 304792063 8329. Polarization: 24h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137834 Sample Accession: GSM4792062 ID: 304792062 8330. Polarization: 24h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137833 Sample Accession: GSM4792061 ID: 304792061 8331. Polarization: 24h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137832 Sample Accession: GSM4792060 ID: 304792060 8332. Polarization: 24h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137895 Sample Accession: GSM4792059 ID: 304792059 8333. Polarization: 12h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137894 Sample Accession: GSM4792058 ID: 304792058 8334. Polarization: 12h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137893 Sample Accession: GSM4792057 ID: 304792057 8335. Polarization: 12h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137892 Sample Accession: GSM4792056 ID: 304792056 8336. Polarization: 12h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137891 Sample Accession: GSM4792055 ID: 304792055 8337. Polarization: 12h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137890 Sample Accession: GSM4792054 ID: 304792054 8338. Polarization: 12h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137889 Sample Accession: GSM4792053 ID: 304792053 8339. Polarization: 6h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137888 Sample Accession: GSM4792052 ID: 304792052 8340. Polarization: 6h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137887 Sample Accession: GSM4792051 ID: 304792051 8341. Polarization: 6h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137886 Sample Accession: GSM4792050 ID: 304792050 8342. Polarization: 6h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137885 Sample Accession: GSM4792049 ID: 304792049 8343. Polarization: 6h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137884 Sample Accession: GSM4792048 ID: 304792048 8344. Polarization: 6h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137883 Sample Accession: GSM4792047 ID: 304792047 8345. Polarization: 4h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137882 Sample Accession: GSM4792046 ID: 304792046 8346. Polarization: 4h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137881 Sample Accession: GSM4792045 ID: 304792045 8347. Polarization: 4h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137880 Sample Accession: GSM4792044 ID: 304792044 8348. Polarization: 4h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137799 Sample Accession: GSM4792043 ID: 304792043 8349. Polarization: 4h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137798 Sample Accession: GSM4792042 ID: 304792042 8350. Polarization: 4h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137797 Sample Accession: GSM4792041 ID: 304792041 8351. Polarization: 2h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137796 Sample Accession: GSM4792040 ID: 304792040 8352. Polarization: 2h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137795 Sample Accession: GSM4792039 ID: 304792039 8353. Polarization: 2h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137794 Sample Accession: GSM4792038 ID: 304792038 8354. Polarization: 2h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137793 Sample Accession: GSM4792037 ID: 304792037 8355. Polarization: 2h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137792 Sample Accession: GSM4792036 ID: 304792036 8356. Polarization: 2h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137791 Sample Accession: GSM4792035 ID: 304792035 8357. Polarization: 1h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137790 Sample Accession: GSM4792034 ID: 304792034 8358. Polarization: 1h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137789 Sample Accession: GSM4792033 ID: 304792033 8359. Polarization: 1h M2-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137788 Sample Accession: GSM4792032 ID: 304792032 8360. Polarization: 1h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137787 Sample Accession: GSM4792031 ID: 304792031 8361. Polarization: 1h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137786 Sample Accession: GSM4792030 ID: 304792030 8362. Polarization: 1h M1-polarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137785 Sample Accession: GSM4792029 ID: 304792029 8363. Polarization: 0h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137784 Sample Accession: GSM4792028 ID: 304792028 8364. Polarization: 0h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137815 Sample Accession: GSM4792027 ID: 304792027 8365. Polarization: 0h unpolarized mouse BMDMs, bulk RNA-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137814 Sample Accession: GSM4792026 ID: 304792026 8366. 72h M1→M0-depolarized mouse BMDMs, bulk ATAC-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137813 Sample Accession: GSM4792025 ID: 304792025 8367. 72h M1→M0-depolarized mouse BMDMs, bulk ATAC-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137812 Sample Accession: GSM4792024 ID: 304792024 8368. 72h M1→M0-depolarized mouse BMDMs, bulk ATAC-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137811 Sample Accession: GSM4792023 ID: 304792023 8369. 24h M1-polarized mouse BMDMs, bulk ATAC-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137810 Sample Accession: GSM4792022 ID: 304792022 8370. 24h M1-polarized mouse BMDMs, bulk ATAC-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137809 Sample Accession: GSM4792021 ID: 304792021 8371. 24h M1-polarized mouse BMDMs, bulk ATAC-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137808 Sample Accession: GSM4792020 ID: 304792020 8372. 0h unpolarized mouse BMDMs, bulk ATAC-seq, biological replicate 3 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137807 Sample Accession: GSM4792019 ID: 304792019 8373. 0h unpolarized mouse BMDMs, bulk ATAC-seq, biological replicate 2 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137806 Sample Accession: GSM4792018 ID: 304792018 8374. 0h unpolarized mouse BMDMs, bulk ATAC-seq, biological replicate 1 Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137805 Sample Accession: GSM4792017 ID: 304792017 8375. 24h M2-polarized mouse BMDMs, 10X single-cell RNA-seq Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137804 Sample Accession: GSM4792016 ID: 304792016 8376. 24h M1-polarized mouse BMDMs, 10X single-cell RNA-seq Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137803 Sample Accession: GSM4792015 ID: 304792015 8377. 24h unpolarized mouse BMDMs, 10X single-cell RNA-seq Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137802 Sample Accession: GSM4792014 ID: 304792014 8378. 6h M2-polarized mouse BMDMs, 10X single-cell RNA-seq Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137801 Sample Accession: GSM4792013 ID: 304792013 8379. 6h M1-polarized mouse BMDMs, 10X single-cell RNA-seq Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137800 Sample Accession: GSM4792012 ID: 304792012 8380. 6h unpolarized mouse BMDMs, 10X single-cell RNA-seq Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137783 Sample Accession: GSM4792011 ID: 304792011 8381. 0h unpolarized mouse BMDMs, 10X single-cell RNA-seq Organism: Mus musculus Source name: bone-marrow derived macrophages (BMDMs) from 6-10 week old C57BL/6J mice Platform: GPL19057 Series: GSE158094 FTP download: GEO (MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4792nnn/GSM4792010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9137782 Sample Accession: GSM4792010 ID: 304792010 8382. SK-N-AS [ATAC-Seq] Organism: Homo sapiens Source name: Neuroblastoma cell lines Platform: GPL11154 Series: GSE136209 GSE136279 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4043nnn/GSM4043955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6756144 Sample Accession: GSM4043955 ID: 304043955 8383. KELLY [ATAC-Seq] Organism: Homo sapiens Source name: Neuroblastoma cell lines Platform: GPL11154 Series: GSE136209 GSE136279 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4043nnn/GSM4043954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6756143 Sample Accession: GSM4043954 ID: 304043954 8384. Egr2fl/fl 24-h IL-4 treated BMDM ATAC-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379069 Sample Accession: GSM4564322 ID: 304564322 8385. Egr2fl/fl 24-h IL-4 treated BMDM ATAC-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379068 Sample Accession: GSM4564321 ID: 304564321 8386. Egr2fl/fl unstimulated BMDM ATAC-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379067 Sample Accession: GSM4564320 ID: 304564320 8387. Egr2fl/fl unstimulated BMDM ATAC-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379066 Sample Accession: GSM4564319 ID: 304564319 8388. Wild-type IL-4 24h BMDM ATAC-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379065 Sample Accession: GSM4564318 ID: 304564318 8389. Wild-type IL-4 24h BMDM ATAC-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379064 Sample Accession: GSM4564317 ID: 304564317 8390. Wild-type unstimulated BMDM ATAC-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379063 Sample Accession: GSM4564316 ID: 304564316 8391. Wild-type unstimulated BMDM ATAC-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379062 Sample Accession: GSM4564315 ID: 304564315 8392. Egr2fl/fl 24-h IL-4 treated BMDM RNAPIIpS2 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379061 Sample Accession: GSM4564314 ID: 304564314 8393. Egr2fl/fl 24-h IL-4 treated BMDM RNAPIIpS2 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379060 Sample Accession: GSM4564313 ID: 304564313 8394. Egr2fl/fl unstimulated BMDM RNAPIIpS2 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379059 Sample Accession: GSM4564312 ID: 304564312 8395. Egr2fl/fl unstimulated BMDM RNAPIIpS2 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379058 Sample Accession: GSM4564311 ID: 304564311 8396. Wild-type IL-4 24h BMDM RNAPIIpS2 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379057 Sample Accession: GSM4564310 ID: 304564310 8397. Wild-type IL-4 24h BMDM RNAPIIpS2 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379056 Sample Accession: GSM4564309 ID: 304564309 8398. Wild-type unstimulated BMDM RNAPIIpS2 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379055 Sample Accession: GSM4564308 ID: 304564308 8399. Wild-type unstimulated BMDM RNAPIIpS2 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379054 Sample Accession: GSM4564307 ID: 304564307 8400. Egr2fl/fl 24-h IL-4 treated BMDM BRM ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379053 Sample Accession: GSM4564306 ID: 304564306 8401. Egr2fl/fl 24-h IL-4 treated BMDM BRM ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379052 Sample Accession: GSM4564305 ID: 304564305 8402. Egr2fl/fl unstimulated BMDM BRM ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379051 Sample Accession: GSM4564304 ID: 304564304 8403. Egr2fl/fl unstimulated BMDM BRM ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379050 Sample Accession: GSM4564303 ID: 304564303 8404. Wild-type IL-4 24h BMDM BRM ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379049 Sample Accession: GSM4564302 ID: 304564302 8405. Wild-type IL-4 24h BMDM BRM ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379048 Sample Accession: GSM4564301 ID: 304564301 8406. Wild-type unstimulated BMDM BRM ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379047 Sample Accession: GSM4564300 ID: 304564300 8407. Wild-type unstimulated BMDM BRM ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379046 Sample Accession: GSM4564299 ID: 304564299 8408. Egr2fl/fl 24-h IL-4 treated BMDM BRD4 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379045 Sample Accession: GSM4564298 ID: 304564298 8409. Egr2fl/fl 24-h IL-4 treated BMDM BRD4 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379044 Sample Accession: GSM4564297 ID: 304564297 8410. Egr2fl/fl unstimulated BMDM BRD4 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379043 Sample Accession: GSM4564296 ID: 304564296 8411. Egr2fl/fl unstimulated BMDM BRD4 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379042 Sample Accession: GSM4564295 ID: 304564295 8412. Wild-type IL-4 24h BMDM BRD4 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379041 Sample Accession: GSM4564294 ID: 304564294 8413. Wild-type IL-4 24h BMDM BRD4 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379040 Sample Accession: GSM4564293 ID: 304564293 8414. Wild-type unstimulated BMDM BRD4 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379039 Sample Accession: GSM4564292 ID: 304564292 8415. Wild-type unstimulated BMDM BRD4 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379038 Sample Accession: GSM4564291 ID: 304564291 8416. Egr2fl/fl 24-h IL-4 treated BMDM H3K27ac ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379037 Sample Accession: GSM4564290 ID: 304564290 8417. Egr2fl/fl 24-h IL-4 treated BMDM H3K27ac ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379036 Sample Accession: GSM4564289 ID: 304564289 8418. Egr2fl/fl unstimulated BMDM H3K27ac ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379035 Sample Accession: GSM4564288 ID: 304564288 8419. Egr2fl/fl unstimulated BMDM H3K27ac ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379034 Sample Accession: GSM4564287 ID: 304564287 8420. Wild-type IL-4 24h BMDM H3K27ac ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379033 Sample Accession: GSM4564286 ID: 304564286 8421. Wild-type IL-4 24h BMDM H3K27ac ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379032 Sample Accession: GSM4564285 ID: 304564285 8422. Wild-type unstimulated BMDM H3K27ac ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379031 Sample Accession: GSM4564284 ID: 304564284 8423. Wild-type unstimulated BMDM H3K27ac ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379030 Sample Accession: GSM4564283 ID: 304564283 8424. Egr2fl/fl 24-h IL-4 treated BMDM P300 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379029 Sample Accession: GSM4564282 ID: 304564282 8425. Egr2fl/fl 24-h IL-4 treated BMDM P300 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379028 Sample Accession: GSM4564281 ID: 304564281 8426. Egr2fl/fl unstimulated BMDM P300 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379027 Sample Accession: GSM4564280 ID: 304564280 8427. Egr2fl/fl unstimulated BMDM P300 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379026 Sample Accession: GSM4564279 ID: 304564279 8428. Wild-type IL-4 24h BMDM P300 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379025 Sample Accession: GSM4564278 ID: 304564278 8429. Wild-type IL-4 24h BMDM P300 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379024 Sample Accession: GSM4564277 ID: 304564277 8430. Wild-type unstimulated BMDM P300 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379023 Sample Accession: GSM4564276 ID: 304564276 8431. Wild-type unstimulated BMDM P300 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379022 Sample Accession: GSM4564275 ID: 304564275 8432. WT IL-4 24h BMDM P300 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379021 Sample Accession: GSM4564274 ID: 304564274 8433. WT IL-4 24h BMDM P300 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379020 Sample Accession: GSM4564273 ID: 304564273 8434. WT IL-4 1h BMDM P300 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379019 Sample Accession: GSM4564272 ID: 304564272 8435. WT IL-4 1h BMDM P300 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379018 Sample Accession: GSM4564271 ID: 304564271 8436. WT unstimulated BMDM P300 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379017 Sample Accession: GSM4564270 ID: 304564270 8437. WT unstimulated BMDM P300 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379016 Sample Accession: GSM4564269 ID: 304564269 8438. WT IL-4 24h BMDM Egr2 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379015 Sample Accession: GSM4564268 ID: 304564268 8439. WT IL-4 24h BMDM Egr2 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379014 Sample Accession: GSM4564267 ID: 304564267 8440. WT IL-4 1h BMDM Egr2 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379013 Sample Accession: GSM4564266 ID: 304564266 8441. WT IL-4 1h BMDM Egr2 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379012 Sample Accession: GSM4564265 ID: 304564265 8442. WT unstimulated BMDM Egr2 ChIP-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379011 Sample Accession: GSM4564264 ID: 304564264 8443. WT unstimulated BMDM Egr2 ChIP-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4564nnn/GSM4564263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379010 Sample Accession: GSM4564263 ID: 304564263 8444. Egr2fl/fl 24-h IL-4 treated BMDM RNA-seq replicate 3 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379009 Sample Accession: GSM4564262 ID: 304564262 8445. Egr2fl/fl 24-h IL-4 treated BMDM RNA-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379008 Sample Accession: GSM4564261 ID: 304564261 8446. Egr2fl/fl 24-h IL-4 treated BMDM RNA-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379007 Sample Accession: GSM4564260 ID: 304564260 8447. Egr2fl/fl unstimulated BMDM RNA-seq replicate 3 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379006 Sample Accession: GSM4564259 ID: 304564259 8448. Egr2fl/fl unstimulated BMDM RNA-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379005 Sample Accession: GSM4564258 ID: 304564258 8449. Egr2fl/fl unstimulated BMDM RNA-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379004 Sample Accession: GSM4564257 ID: 304564257 8450. Wild-type 24-h IL-4 treated BMDM RNA-seq replicate 3 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379003 Sample Accession: GSM4564256 ID: 304564256 8451. Wild-type 24-h IL-4 treated BMDM RNA-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379002 Sample Accession: GSM4564255 ID: 304564255 8452. Wild-type 24-h IL-4 treated BMDM RNA-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379001 Sample Accession: GSM4564254 ID: 304564254 8453. Wild-type unstimulated BMDM RNA-seq replicate 3 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8379000 Sample Accession: GSM4564253 ID: 304564253 8454. Wild-type unstimulated BMDM RNA-seq replicate 2 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8378999 Sample Accession: GSM4564252 ID: 304564252 8455. Wild-type unstimulated BMDM RNA-seq replicate 1 Organism: Mus musculus Source name: Bone marrow derived macrophages Platform: GPL19057 Series: GSE151015 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8378998 Sample Accession: GSM4564251 ID: 304564251 8456. H1944_G1232S_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685762 Sample Accession: GSM4299124 ID: 304299124 8457. H1944_G1232S_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685761 Sample Accession: GSM4299123 ID: 304299123 8458. H1944_R1192C_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685760 Sample Accession: GSM4299122 ID: 304299122 8459. H1944_R1192C_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685759 Sample Accession: GSM4299121 ID: 304299121 8460. H1944_A1186T_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685758 Sample Accession: GSM4299120 ID: 304299120 8461. H1944_A1186T_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685757 Sample Accession: GSM4299119 ID: 304299119 8462. H1944_G1162C_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685756 Sample Accession: GSM4299118 ID: 304299118 8463. H1944_G1162C_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685755 Sample Accession: GSM4299117 ID: 304299117 8464. H1944_G1159V_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685754 Sample Accession: GSM4299116 ID: 304299116 8465. H1944_G1159V_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685753 Sample Accession: GSM4299115 ID: 304299115 8466. H1944_R1135W_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685752 Sample Accession: GSM4299114 ID: 304299114 8467. H1944_R1135W_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685751 Sample Accession: GSM4299113 ID: 304299113 8468. H1944_R973L_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685750 Sample Accession: GSM4299112 ID: 304299112 8469. H1944_R973L_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685749 Sample Accession: GSM4299111 ID: 304299111 8470. H1944_T910M_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685748 Sample Accession: GSM4299110 ID: 304299110 8471. H1944_T910M_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685747 Sample Accession: GSM4299109 ID: 304299109 8472. H1944_E882K_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685746 Sample Accession: GSM4299108 ID: 304299108 8473. H1944_E882K_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685745 Sample Accession: GSM4299107 ID: 304299107 8474. H1944_K785R_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299106/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685744 Sample Accession: GSM4299106 ID: 304299106 8475. H1944_K785R_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685743 Sample Accession: GSM4299105 ID: 304299105 8476. H1944_WT_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685742 Sample Accession: GSM4299104 ID: 304299104 8477. H1944_WT_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685741 Sample Accession: GSM4299103 ID: 304299103 8478. H1944_LACZ_shSMARCA2_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685740 Sample Accession: GSM4299102 ID: 304299102 8479. H1944_LACZ_shNTC_R2 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299101/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685739 Sample Accession: GSM4299101 ID: 304299101 8480. H1944_G1232S_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685738 Sample Accession: GSM4299100 ID: 304299100 8481. H1944_G1232S_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685737 Sample Accession: GSM4299099 ID: 304299099 8482. H1944_R1192C_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685736 Sample Accession: GSM4299098 ID: 304299098 8483. H1944_R1192C_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685735 Sample Accession: GSM4299097 ID: 304299097 8484. H1944_A1186T_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685734 Sample Accession: GSM4299096 ID: 304299096 8485. H1944_A1186T_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685733 Sample Accession: GSM4299095 ID: 304299095 8486. H1944_G1162C_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685732 Sample Accession: GSM4299094 ID: 304299094 8487. H1944_G1162C_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685731 Sample Accession: GSM4299093 ID: 304299093 8488. H1944_G1159V_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685730 Sample Accession: GSM4299092 ID: 304299092 8489. H1944_G1159V_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685729 Sample Accession: GSM4299091 ID: 304299091 8490. H1944_R1135W_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685728 Sample Accession: GSM4299090 ID: 304299090 8491. H1944_R1135W_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685727 Sample Accession: GSM4299089 ID: 304299089 8492. H1944_R973L_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299088/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685726 Sample Accession: GSM4299088 ID: 304299088 8493. H1944_R973L_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299087/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685725 Sample Accession: GSM4299087 ID: 304299087 8494. H1944_T910M_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299086/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685724 Sample Accession: GSM4299086 ID: 304299086 8495. H1944_T910M_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685723 Sample Accession: GSM4299085 ID: 304299085 8496. H1944_E882K_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685722 Sample Accession: GSM4299084 ID: 304299084 8497. H1944_E882K_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685721 Sample Accession: GSM4299083 ID: 304299083 8498. H1944_K785R_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685720 Sample Accession: GSM4299082 ID: 304299082 8499. H1944_K785R_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685719 Sample Accession: GSM4299081 ID: 304299081 8500. H1944_WT_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685718 Sample Accession: GSM4299080 ID: 304299080 8501. H1944_WT_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685717 Sample Accession: GSM4299079 ID: 304299079 8502. H1944_LACZ_shSMARCA2_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685716 Sample Accession: GSM4299078 ID: 304299078 8503. H1944_LACZ_shNTC_R1 (ATAC-seq) Organism: Homo sapiens Source name: NCI-H1944 cells Platform: GPL20301 Series: GSE144840 GSE144844 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4299nnn/GSM4299077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7685715 Sample Accession: GSM4299077 ID: 304299077 8504. ATAC_SSCL_V_2 Organism: Homo sapiens Source name: primary human SSCL dermal fibroblast with JUN knock-out Platform: GPL18573 Series: GSE151943 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4594nnn/GSM4594198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8485711 Sample Accession: GSM4594198 ID: 304594198 8505. ATAC_SSCL_V_1 Organism: Homo sapiens Source name: primary human SSCL dermal fibroblast with JUN knock-out Platform: GPL18573 Series: GSE151943 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4594nnn/GSM4594197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8485710 Sample Accession: GSM4594197 ID: 304594197 8506. ATAC_SSCL_KO_2 Organism: Homo sapiens Source name: primary human SSCL dermal fibroblast with JUN knock-out Platform: GPL18573 Series: GSE151943 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4594nnn/GSM4594196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8485709 Sample Accession: GSM4594196 ID: 304594196 8507. ATAC_SSCL_KO_1 Organism: Homo sapiens Source name: primary human SSCL dermal fibroblast with JUN knock-out Platform: GPL18573 Series: GSE151943 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4594nnn/GSM4594195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8485708 Sample Accession: GSM4594195 ID: 304594195 8508. ATAC_SSCL_2 Organism: Homo sapiens Source name: primary human SSCL dermal fibroblast Platform: GPL18573 Series: GSE151943 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4594nnn/GSM4594194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8485707 Sample Accession: GSM4594194 ID: 304594194 8509. ATAC_SSCL_1 Organism: Homo sapiens Source name: primary human SSCL dermal fibroblast Platform: GPL18573 Series: GSE151943 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4594nnn/GSM4594193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8485706 Sample Accession: GSM4594193 ID: 304594193 8510. ATACseq in EB-Day4[D0+RA+SAG][D2+48hDox(iFlag.Hoxc10)] replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies+4D RA+SAG with induced transcription factors Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416011 Sample Accession: GSM4226433 ID: 304226433 8511. ATACseq in EB-Day4[D0+RA+SAG][D2+48hDox(iFlag.Hoxc10)] replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies+4D RA+SAG with induced transcription factors Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4226nnn/GSM4226432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416010 Sample Accession: GSM4226432 ID: 304226432 8512. ATACseq in EB-Day4[D0+RA+SAG][D2+48hDox(iFlag.Hoxc9)] replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies+4D RA+SAG with induced transcription factors Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416009 Sample Accession: GSM4226431 ID: 304226431 8513. ATACseq in EB-Day4[D0+RA+SAG][D2+48hDox(iFlag.Hoxc9)] replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies+4D RA+SAG with induced transcription factors Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4226nnn/GSM4226430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416008 Sample Accession: GSM4226430 ID: 304226430 8514. ATACseq in EB-Day4[D0+RA+SAG][D2+48hDox(iFlag.Hoxc6)] replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies+4D RA+SAG with induced transcription factors Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416007 Sample Accession: GSM4226429 ID: 304226429 8515. ATACseq in EB-Day4[D0+RA+SAG][D2+48hDox(iFlag.Hoxc6)] replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies+4D RA+SAG with induced transcription factors Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4226nnn/GSM4226428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416006 Sample Accession: GSM4226428 ID: 304226428 8516. ATACseq in EB-Day2[D0+RA+SAG]_replicate2 Organism: Mus musculus Source name: ES-derived embryoid bodies+2D RA+SAG Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416005 Sample Accession: GSM4226427 ID: 304226427 8517. ATACseq in EB-Day2[D0+RA+SAG]_replicate1 Organism: Mus musculus Source name: ES-derived embryoid bodies+2D RA+SAG Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4226nnn/GSM4226426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416004 Sample Accession: GSM4226426 ID: 304226426 8518. ATACseq in EB_replicate2 Organism: Mus musculus Source name: ES-derived embryoid bodies Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416003 Sample Accession: GSM4226425 ID: 304226425 8519. ATACseq in EB_replicate1 Organism: Mus musculus Source name: ES-derived embryoid bodies Platform: GPL19057 Series: GSE142375 GSE142379 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4226nnn/GSM4226424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7416002 Sample Accession: GSM4226424 ID: 304226424 8520. YueLab-RNA-seq-Blood-rep2 Organism: Danio rerio Source name: YueLab-RNA-seq-Blood Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688333 Sample Accession: GSM4662086 ID: 304662086 8521. YueLab-RNA-seq-Blood-rep1 Organism: Danio rerio Source name: YueLab-RNA-seq-Blood Platform: GPL24995 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688332 Sample Accession: GSM4662085 ID: 304662085 8522. YueLab-muscle-HiC-rep2 Organism: Danio rerio Source name: YueLab-muscle-HiC Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688331 Sample Accession: GSM4662084 ID: 304662084 8523. YueLab-muscle-HiC-rep1 Organism: Danio rerio Source name: YueLab-muscle-HiC Platform: GPL24995 Series: GSE134055 FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688330 Sample Accession: GSM4662083 ID: 304662083 8524. YueLab-brain-HiC-rep2 Organism: Danio rerio Source name: YueLab-brain-HiC Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688329 Sample Accession: GSM4662082 ID: 304662082 8525. YueLab-Input-Blood-rep2 Organism: Danio rerio Source name: YueLab-Input-Blood Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688316 Sample Accession: GSM4662069 ID: 304662069 8526. YueLab-Input-Blood-rep1 Organism: Danio rerio Source name: YueLab-Input-Blood Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688315 Sample Accession: GSM4662068 ID: 304662068 8527. YueLab-H3K9me3-Blood-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Blood Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688274 Sample Accession: GSM4662027 ID: 304662027 8528. YueLab-H3K9me3-Blood-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Blood Platform: GPL24995 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688273 Sample Accession: GSM4662026 ID: 304662026 8529. YueLab-H3K9me2-Blood-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Blood Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688252 Sample Accession: GSM4662005 ID: 304662005 8530. YueLab-H3K9me2-Blood-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Blood Platform: GPL24995 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688251 Sample Accession: GSM4662004 ID: 304662004 8531. YueLab-H3K4me3-Blood-rep2 Organism: Danio rerio Source name: YueLab-H3K4me3-Blood Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688250 Sample Accession: GSM4662003 ID: 304662003 8532. YueLab-H3K4me3-Blood-rep1 Organism: Danio rerio Source name: YueLab-H3K4me3-Blood Platform: GPL24995 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688249 Sample Accession: GSM4662002 ID: 304662002 8533. YueLab-H3K27ac-Blood-rep2 Organism: Danio rerio Source name: YueLab-H3K27ac-Blood Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688248 Sample Accession: GSM4662001 ID: 304662001 8534. YueLab-H3K27ac-Blood-rep1 Organism: Danio rerio Source name: YueLab-H3K27ac-Blood Platform: GPL24995 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688247 Sample Accession: GSM4662000 ID: 304662000 8535. YueLab-ATACseq-Testis-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Testis Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688246 Sample Accession: GSM4661999 ID: 304661999 8536. YueLab-ATACseq-Spleen-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Spleen Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688244 Sample Accession: GSM4661997 ID: 304661997 8537. YueLab-ATACseq-Skin-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Skin Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688242 Sample Accession: GSM4661995 ID: 304661995 8538. YueLab-ATACseq-Muscle-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Muscle Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688240 Sample Accession: GSM4661993 ID: 304661993 8539. YueLab-ATACseq-Muscle-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Muscle Platform: GPL24995 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688239 Sample Accession: GSM4661992 ID: 304661992 8540. YueLab-ATACseq-Liver-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Liver Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688238 Sample Accession: GSM4661991 ID: 304661991 8541. YueLab-ATACseq-Kidney-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Kidney Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688236 Sample Accession: GSM4661989 ID: 304661989 8542. YueLab-ATACseq-Intestine-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Intestine Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688234 Sample Accession: GSM4661987 ID: 304661987 8543. YueLab-ATACseq-Heart-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Heart Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688232 Sample Accession: GSM4661985 ID: 304661985 8544. YueLab-ATACseq-Colon-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Colon Platform: GPL24995 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688229 Sample Accession: GSM4661982 ID: 304661982 8545. YueLab-ATACseq-Blood-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Blood Platform: GPL24995 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688225 Sample Accession: GSM4661978 ID: 304661978 8546. YueLab-ATACseq-Blood-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Blood Platform: GPL24995 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688224 Sample Accession: GSM4661977 ID: 304661977 8547. YueLab-brain-HiC-rep1 Organism: Danio rerio Source name: YueLab-brain-HiC Platform: GPL23085 Series: GSE134055 FTP download: GEO (HIC) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688328 Sample Accession: GSM4662081 ID: 304662081 8548. YueLab-Testis-WGBS Organism: Danio rerio Source name: YueLab-Testis-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688327 Sample Accession: GSM4662080 ID: 304662080 8549. YueLab-Spleen-WGBS Organism: Danio rerio Source name: YueLab-Spleen-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688326 Sample Accession: GSM4662079 ID: 304662079 8550. YueLab-Skin-WGBS Organism: Danio rerio Source name: YueLab-Skin-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688325 Sample Accession: GSM4662078 ID: 304662078 8551. YueLab-Muscle-WGBS Organism: Danio rerio Source name: YueLab-Muscle-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688324 Sample Accession: GSM4662077 ID: 304662077 8552. YueLab-Liver-WGBS Organism: Danio rerio Source name: YueLab-Liver-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688323 Sample Accession: GSM4662076 ID: 304662076 8553. YueLab-Kidney-WGBS Organism: Danio rerio Source name: YueLab-Kidney-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688322 Sample Accession: GSM4662075 ID: 304662075 8554. YueLab-Intestine-WGBS Organism: Danio rerio Source name: YueLab-Intestine-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688321 Sample Accession: GSM4662074 ID: 304662074 8555. YueLab-Heart-WGBS Organism: Danio rerio Source name: YueLab-Heart-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662073/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688320 Sample Accession: GSM4662073 ID: 304662073 8556. YueLab-Colon-WGBS Organism: Danio rerio Source name: YueLab-Colon-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662072/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688319 Sample Accession: GSM4662072 ID: 304662072 8557. YueLab-Brain-WGBS Organism: Danio rerio Source name: YueLab-Brain-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662071/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688318 Sample Accession: GSM4662071 ID: 304662071 8558. YueLab-Blood-WGBS Organism: Danio rerio Source name: YueLab-Blood-WGBS Platform: GPL23085 Series: GSE134055 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662070/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688317 Sample Accession: GSM4662070 ID: 304662070 8559. YueLab-H3K9me3-H3K9me2-Input-Testis-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Testis Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688314 Sample Accession: GSM4662067 ID: 304662067 8560. YueLab-H3K9me3-H3K9me2-Input-Testis-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Testis Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688313 Sample Accession: GSM4662066 ID: 304662066 8561. YueLab-H3K9me3-H3K9me2-Input-Spleen-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Spleen Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688312 Sample Accession: GSM4662065 ID: 304662065 8562. YueLab-H3K9me3-H3K9me2-Input-Spleen-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Spleen Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688311 Sample Accession: GSM4662064 ID: 304662064 8563. YueLab-H3K9me3-H3K9me2-Input-Skin-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Skin Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688310 Sample Accession: GSM4662063 ID: 304662063 8564. YueLab-H3K9me3-H3K9me2-Input-Skin-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Skin Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688309 Sample Accession: GSM4662062 ID: 304662062 8565. YueLab-H3K9me3-H3K9me2-Input-Muscle-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Muscle Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688308 Sample Accession: GSM4662061 ID: 304662061 8566. YueLab-H3K9me3-H3K9me2-Input-Muscle-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Muscle Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688307 Sample Accession: GSM4662060 ID: 304662060 8567. YueLab-H3K9me3-H3K9me2-Input-Liver-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Liver Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688306 Sample Accession: GSM4662059 ID: 304662059 8568. YueLab-H3K9me3-H3K9me2-Input-Liver-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Liver Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688305 Sample Accession: GSM4662058 ID: 304662058 8569. YueLab-H3K9me3-H3K9me2-Input-Kidney-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Kidney Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688304 Sample Accession: GSM4662057 ID: 304662057 8570. YueLab-H3K9me3-H3K9me2-Input-Kidney-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Kidney Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688303 Sample Accession: GSM4662056 ID: 304662056 8571. YueLab-H3K9me3-H3K9me2-Input-Intestine-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Intestine Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688302 Sample Accession: GSM4662055 ID: 304662055 8572. YueLab-H3K9me3-H3K9me2-Input-Intestine-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Intestine Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688301 Sample Accession: GSM4662054 ID: 304662054 8573. YueLab-H3K9me3-H3K9me2-Input-Heart-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Heart Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688300 Sample Accession: GSM4662053 ID: 304662053 8574. YueLab-H3K9me3-H3K9me2-Input-Heart-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Heart Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688299 Sample Accession: GSM4662052 ID: 304662052 8575. YueLab-H3K9me3-H3K9me2-Input-Colon-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Colon Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688298 Sample Accession: GSM4662051 ID: 304662051 8576. YueLab-H3K9me3-H3K9me2-Input-Colon-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Colon Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688297 Sample Accession: GSM4662050 ID: 304662050 8577. YueLab-H3K9me3-H3K9me2-Input-Brain-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Brain Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688296 Sample Accession: GSM4662049 ID: 304662049 8578. YueLab-H3K9me3-H3K9me2-Input-Brain-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-H3K9me2-Input-Brain Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688295 Sample Accession: GSM4662048 ID: 304662048 8579. YueLab-H3K9me3-Testis-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Testis Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688294 Sample Accession: GSM4662047 ID: 304662047 8580. YueLab-H3K9me3-Testis-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Testis Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688293 Sample Accession: GSM4662046 ID: 304662046 8581. YueLab-H3K9me3-Spleen-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Spleen Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688292 Sample Accession: GSM4662045 ID: 304662045 8582. YueLab-H3K9me3-Spleen-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Spleen Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688291 Sample Accession: GSM4662044 ID: 304662044 8583. YueLab-H3K9me3-Skin-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Skin Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688290 Sample Accession: GSM4662043 ID: 304662043 8584. YueLab-H3K9me3-Skin-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Skin Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688289 Sample Accession: GSM4662042 ID: 304662042 8585. YueLab-H3K9me3-Muscle-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Muscle Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688288 Sample Accession: GSM4662041 ID: 304662041 8586. YueLab-H3K9me3-Muscle-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Muscle Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688287 Sample Accession: GSM4662040 ID: 304662040 8587. YueLab-H3K9me3-Liver-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Liver Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688286 Sample Accession: GSM4662039 ID: 304662039 8588. YueLab-H3K9me3-Liver-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Liver Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688285 Sample Accession: GSM4662038 ID: 304662038 8589. YueLab-H3K9me3-Kidney-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Kidney Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688284 Sample Accession: GSM4662037 ID: 304662037 8590. YueLab-H3K9me3-Kidney-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Kidney Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688283 Sample Accession: GSM4662036 ID: 304662036 8591. YueLab-H3K9me3-Intestine-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Intestine Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688282 Sample Accession: GSM4662035 ID: 304662035 8592. YueLab-H3K9me3-Intestine-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Intestine Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688281 Sample Accession: GSM4662034 ID: 304662034 8593. YueLab-H3K9me3-Heart-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Heart Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688280 Sample Accession: GSM4662033 ID: 304662033 8594. YueLab-H3K9me3-Heart-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Heart Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688279 Sample Accession: GSM4662032 ID: 304662032 8595. YueLab-H3K9me3-Colon-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Colon Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688278 Sample Accession: GSM4662031 ID: 304662031 8596. YueLab-H3K9me3-Colon-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Colon Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688277 Sample Accession: GSM4662030 ID: 304662030 8597. YueLab-H3K9me3-Brain-rep2 Organism: Danio rerio Source name: YueLab-H3K9me3-Brain Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688276 Sample Accession: GSM4662029 ID: 304662029 8598. YueLab-H3K9me3-Brain-rep1 Organism: Danio rerio Source name: YueLab-H3K9me3-Brain Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688275 Sample Accession: GSM4662028 ID: 304662028 8599. YueLab-H3K9me2-Testis-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Testis Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688272 Sample Accession: GSM4662025 ID: 304662025 8600. YueLab-H3K9me2-Testis-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Testis Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688271 Sample Accession: GSM4662024 ID: 304662024 8601. YueLab-H3K9me2-Spleen-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Spleen Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688270 Sample Accession: GSM4662023 ID: 304662023 8602. YueLab-H3K9me2-Spleen-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Spleen Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688269 Sample Accession: GSM4662022 ID: 304662022 8603. YueLab-H3K9me2-Skin-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Skin Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688268 Sample Accession: GSM4662021 ID: 304662021 8604. YueLab-H3K9me2-Skin-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Skin Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688267 Sample Accession: GSM4662020 ID: 304662020 8605. YueLab-H3K9me2-Muscle-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Muscle Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688266 Sample Accession: GSM4662019 ID: 304662019 8606. YueLab-H3K9me2-Muscle-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Muscle Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688265 Sample Accession: GSM4662018 ID: 304662018 8607. YueLab-H3K9me2-Liver-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Liver Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688264 Sample Accession: GSM4662017 ID: 304662017 8608. YueLab-H3K9me2-Liver-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Liver Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688263 Sample Accession: GSM4662016 ID: 304662016 8609. YueLab-H3K9me2-Kidney-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Kidney Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688262 Sample Accession: GSM4662015 ID: 304662015 8610. YueLab-H3K9me2-Kidney-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Kidney Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688261 Sample Accession: GSM4662014 ID: 304662014 8611. YueLab-H3K9me2-Intestine-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Intestine Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688260 Sample Accession: GSM4662013 ID: 304662013 8612. YueLab-H3K9me2-Intestine-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Intestine Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688259 Sample Accession: GSM4662012 ID: 304662012 8613. YueLab-H3K9me2-Heart-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Heart Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688258 Sample Accession: GSM4662011 ID: 304662011 8614. YueLab-H3K9me2-Heart-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Heart Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688257 Sample Accession: GSM4662010 ID: 304662010 8615. YueLab-H3K9me2-Colon-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Colon Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688256 Sample Accession: GSM4662009 ID: 304662009 8616. YueLab-H3K9me2-Colon-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Colon Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688255 Sample Accession: GSM4662008 ID: 304662008 8617. YueLab-H3K9me2-Brain-rep2 Organism: Danio rerio Source name: YueLab-H3K9me2-Brain Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688254 Sample Accession: GSM4662007 ID: 304662007 8618. YueLab-H3K9me2-Brain-rep1 Organism: Danio rerio Source name: YueLab-H3K9me2-Brain Platform: GPL23085 Series: GSE134055 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688253 Sample Accession: GSM4662006 ID: 304662006 8619. YueLab-ATACseq-Testis-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Testis Platform: GPL23085 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688245 Sample Accession: GSM4661998 ID: 304661998 8620. YueLab-ATACseq-Spleen-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Spleen Platform: GPL23085 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688243 Sample Accession: GSM4661996 ID: 304661996 8621. YueLab-ATACseq-Skin-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Skin Platform: GPL23085 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688241 Sample Accession: GSM4661994 ID: 304661994 8622. YueLab-ATACseq-Liver-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Liver Platform: GPL23085 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688237 Sample Accession: GSM4661990 ID: 304661990 8623. YueLab-ATACseq-Kidney-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Kidney Platform: GPL23085 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688235 Sample Accession: GSM4661988 ID: 304661988 8624. YueLab-ATACseq-Intestine-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Intestine Platform: GPL23085 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688233 Sample Accession: GSM4661986 ID: 304661986 8625. YueLab-ATACseq-Heart-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Heart Platform: GPL23085 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688231 Sample Accession: GSM4661984 ID: 304661984 8626. YueLab-ATACseq-Colons-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Colons Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688230 Sample Accession: GSM4661983 ID: 304661983 8627. YueLab-ATACseq-BRAIN-rep3 Organism: Danio rerio Source name: YueLab-ATACseq-BRAIN Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688228 Sample Accession: GSM4661981 ID: 304661981 8628. YueLab-ATACseq-Brain-rep2 Organism: Danio rerio Source name: YueLab-ATACseq-Brain Platform: GPL23085 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688227 Sample Accession: GSM4661980 ID: 304661980 8629. YueLab-ATACseq-Brain-rep1 Organism: Danio rerio Source name: YueLab-ATACseq-Brain Platform: GPL23085 Series: GSE134055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4661nnn/GSM4661979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688226 Sample Accession: GSM4661979 ID: 304661979 8630. brain_scATAC-seq_rep2 Organism: Danio rerio Source name: brain_scATAC-seq_rep2 Platform: GPL14875 Series: GSE134055 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688335 Sample Accession: GSM4662088 ID: 304662088 8631. brain_scATAC-seq_rep1 Organism: Danio rerio Source name: brain_scATAC-seq_rep1 Platform: GPL14875 Series: GSE134055 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4662nnn/GSM4662087/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8688334 Sample Accession: GSM4662087 ID: 304662087 8632. ATAC-seq BFF2 Organism: Bubalus bubalis Source name: Fibroblasts with high cloning efficiency Platform: GPL24849 Series: GSE157250 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4760nnn/GSM4760195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9029046 Sample Accession: GSM4760195 ID: 304760195 8633. ATAC-seq BFF1 Organism: Bubalus bubalis Source name: Fibroblasts with low cloning efficiency Platform: GPL24849 Series: GSE157250 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4760nnn/GSM4760194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9029045 Sample Accession: GSM4760194 ID: 304760194 8634. MDA-MB-361 Abemaciclib 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030905 Sample Accession: GSM4752210 ID: 304752210 8635. MDA-MB-361 Abemaciclib 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030904 Sample Accession: GSM4752209 ID: 304752209 8636. MDA-MB-361 DMSO 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030903 Sample Accession: GSM4752208 ID: 304752208 8637. MDA-MB-361 DMSO 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752207/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030902 Sample Accession: GSM4752207 ID: 304752207 8638. MDA-MB-453 Abemaciclib 24 hours (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030901 Sample Accession: GSM4752206 ID: 304752206 8639. MDA-MB-453 Abemaciclib 24 hours (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030900 Sample Accession: GSM4752205 ID: 304752205 8640. MDA-MB-453 Abemaciclib 12 hours (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030899 Sample Accession: GSM4752204 ID: 304752204 8641. MDA-MB-453 Abemaciclib 12 hours (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030898 Sample Accession: GSM4752203 ID: 304752203 8642. MCF7 shRB Abemaciclib 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030897 Sample Accession: GSM4752202 ID: 304752202 8643. MCF7 shRB Abemaciclib 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030896 Sample Accession: GSM4752201 ID: 304752201 8644. MCF7 shRB DMSO 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752200/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030895 Sample Accession: GSM4752200 ID: 304752200 8645. MCF7 shRB DMSO 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752199/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030894 Sample Accession: GSM4752199 ID: 304752199 8646. MCF7 Abemaciclib 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030893 Sample Accession: GSM4752198 ID: 304752198 8647. MCF7 Abemaciclib 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030892 Sample Accession: GSM4752197 ID: 304752197 8648. MCF7 Abemaciclib 24 hours (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030891 Sample Accession: GSM4752196 ID: 304752196 8649. MCF7 Abemaciclib 24 hours (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030890 Sample Accession: GSM4752195 ID: 304752195 8650. MCF7 Abemaciclib 12 hours (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030889 Sample Accession: GSM4752194 ID: 304752194 8651. MCF7 Abemaciclib 12 hours (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030888 Sample Accession: GSM4752193 ID: 304752193 8652. MCF7 DMSO 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030887 Sample Accession: GSM4752192 ID: 304752192 8653. MCF7 DMSO 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030886 Sample Accession: GSM4752191 ID: 304752191 8654. MDA-MB-468 Abemaciclib 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030885 Sample Accession: GSM4752190 ID: 304752190 8655. MDA-MB-468 Abemaciclib 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030884 Sample Accession: GSM4752189 ID: 304752189 8656. MDA-MB-468 Abemaciclib 24 hours (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030883 Sample Accession: GSM4752188 ID: 304752188 8657. MDA-MB-468 Abemaciclib 24 hours (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030913 Sample Accession: GSM4752187 ID: 304752187 8658. MDA-MB-468 Abemaciclib 12 hours (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030912 Sample Accession: GSM4752186 ID: 304752186 8659. MDA-MB-468 Abemaciclib 12 hours (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030911 Sample Accession: GSM4752185 ID: 304752185 8660. MDA-MB-468 DMSO 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030910 Sample Accession: GSM4752184 ID: 304752184 8661. MDA-MB-468 DMSO 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030909 Sample Accession: GSM4752183 ID: 304752183 8662. MDA-MB-453 Abemaciclib 7 days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030908 Sample Accession: GSM4752182 ID: 304752182 8663. MDA-MB-453 Abemaciclib 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030907 Sample Accession: GSM4752181 ID: 304752181 8664. MDA-MB-453 DMSO 7days (replicate 2) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030906 Sample Accession: GSM4752180 ID: 304752180 8665. MDA-MB-453 DMSO 7 days (replicate 1) Organism: Homo sapiens Source name: Breast carcinoma cell line Platform: GPL18573 Series: GSE157082 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4752nnn/GSM4752179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030882 Sample Accession: GSM4752179 ID: 304752179 8666. 8-week mouse kidney bulk ATAC-seq sample 2 Organism: Mus musculus Source name: 8-week mouse kidney Platform: GPL21493 Series: GSE157079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030830 Sample Accession: GSM4752172 ID: 304752172 8667. 8-week mouse kidney bulk ATAC-seq sample 1 Organism: Mus musculus Source name: 8-week mouse kidney Platform: GPL21493 Series: GSE157079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030819 Sample Accession: GSM4752171 ID: 304752171 8668. 3-week mouse kidney bulk ATAC-seq sample 2 Organism: Mus musculus Source name: 3-week mouse kidney Platform: GPL21493 Series: GSE157079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030818 Sample Accession: GSM4752170 ID: 304752170 8669. 3-week mouse kidney bulk ATAC-seq sample 1 Organism: Mus musculus Source name: 3-week mouse kidney Platform: GPL21493 Series: GSE157079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030829 Sample Accession: GSM4752169 ID: 304752169 8670. P0 mouse kidney bulk ATAC-seq sample 2 Organism: Mus musculus Source name: P0 mouse kidney Platform: GPL21493 Series: GSE157079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030828 Sample Accession: GSM4752168 ID: 304752168 8671. P0 mouse kidney bulk ATAC-seq sample 1 Organism: Mus musculus Source name: P0 mouse kidney Platform: GPL21493 Series: GSE157079 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9030827 Sample Accession: GSM4752167 ID: 304752167 8672. ATAC-Seq T4L3 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024667 Sample Accession: GSM4750152 ID: 304750152 8673. ATAC-Seq T4L2 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024666 Sample Accession: GSM4750151 ID: 304750151 8674. ATAC-Seq T4L1 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024665 Sample Accession: GSM4750150 ID: 304750150 8675. ATAC-Seq T3L3 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024664 Sample Accession: GSM4750149 ID: 304750149 8676. ATAC-Seq T3L2 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024663 Sample Accession: GSM4750148 ID: 304750148 8677. ATAC-Seq T3L1 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024662 Sample Accession: GSM4750147 ID: 304750147 8678. ATAC-Seq T2L3 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024661 Sample Accession: GSM4750146 ID: 304750146 8679. ATAC-Seq T2L2 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024660 Sample Accession: GSM4750145 ID: 304750145 8680. ATAC-Seq T2L1 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024659 Sample Accession: GSM4750144 ID: 304750144 8681. ATAC-Seq T1L3 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024658 Sample Accession: GSM4750143 ID: 304750143 8682. ATAC-Seq T1L2 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024657 Sample Accession: GSM4750142 ID: 304750142 8683. ATAC-Seq T1L1 Organism: Salmo salar Source name: liver Platform: GPL28848 Series: GSE156998 GSE157003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX9024656 Sample Accession: GSM4750141 ID: 304750141 8684. VSMC_ATAC-seq_2 Organism: Homo sapiens Source name: Embryonic stem cell-derived VSMC Platform: GPL20301 Series: GSE119188 GSE119189 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3535nnn/GSM3535589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5191020 Sample Accession: GSM3535589 ID: 303535589 8685. VSMC_ATAC-seq_1 Organism: Homo sapiens Source name: Embryonic stem cell-derived VSMC Platform: GPL20301 Series: GSE119188 GSE119189 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3535nnn/GSM3535588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5191019 Sample Accession: GSM3535588 ID: 303535588 8686. IMR90Induced_ATAC-seq_2 Organism: Homo sapiens Source name: Lung Platform: GPL20301 Series: GSE119188 GSE119189 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3360nnn/GSM3360579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4620931 Sample Accession: GSM3360579 ID: 303360579 8687. IMR90Induced_ATAC-seq_1 Organism: Homo sapiens Source name: Lung Platform: GPL20301 Series: GSE119188 GSE119189 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3360nnn/GSM3360578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4620930 Sample Accession: GSM3360578 ID: 303360578 8688. IMR90C_ATAC-seq_2 Organism: Homo sapiens Source name: Lung Platform: GPL20301 Series: GSE119188 GSE119189 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3360nnn/GSM3360577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4620929 Sample Accession: GSM3360577 ID: 303360577 8689. IMR90C_ATAC-seq_1 Organism: Homo sapiens Source name: Lung Platform: GPL20301 Series: GSE119188 GSE119189 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3360nnn/GSM3360576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4620928 Sample Accession: GSM3360576 ID: 303360576 8690. bulk-ATACseq_CD34+ cells - 48h_donor3 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998100 Sample Accession: GSM4743262 ID: 304743262 8691. bulk-ATACseq_CD34+ cells - 48h_donor2 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998099 Sample Accession: GSM4743261 ID: 304743261 8692. bulk-ATACseq_CD34+ cells - 48h_donor1 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998098 Sample Accession: GSM4743260 ID: 304743260 8693. bulk-ATACseq_CD34+ cells - 24h_donor3 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998097 Sample Accession: GSM4743259 ID: 304743259 8694. bulk-ATACseq_CD34+ cells - 24h_donor2 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998096 Sample Accession: GSM4743258 ID: 304743258 8695. bulk-ATACseq_CD34+ cells - 24h_donor1 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998095 Sample Accession: GSM4743257 ID: 304743257 8696. bulk-ATACseq_CD34+ cells - 5h_donor3 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998094 Sample Accession: GSM4743256 ID: 304743256 8697. bulk-ATACseq_CD34+ cells - 5h_donor2 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998093 Sample Accession: GSM4743255 ID: 304743255 8698. bulk-ATACseq_CD34+ cells - 5h_donor1 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998092 Sample Accession: GSM4743254 ID: 304743254 8699. bulk-ATACseq_CD34+ cells - 0h_donor3 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998091 Sample Accession: GSM4743253 ID: 304743253 8700. bulk-ATACseq_CD34+ cells - 0h_donor2 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998090 Sample Accession: GSM4743252 ID: 304743252 8701. bulk-ATACseq_CD34+ cells - 0h_donor1 Organism: Homo sapiens Source name: Umbilical cord blood Platform: GPL16791 Series: GSE156733 GSE156735 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8998089 Sample Accession: GSM4743251 ID: 304743251 8702. ATAC-seq ASZ_AP1_inh_rep2 Organism: Mus musculus Source name: ASZ001 murine BCC cell line Platform: GPL13112 Series: GSE156764 GSE156855 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8999016 Sample Accession: GSM4743658 ID: 304743658 8703. ATAC-seq ASZ_AP1_inh_rep1 Organism: Mus musculus Source name: ASZ001 murine BCC cell line Platform: GPL13112 Series: GSE156764 GSE156855 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8999015 Sample Accession: GSM4743657 ID: 304743657 8704. ATAC-seq ASZ_con_rep2 Organism: Mus musculus Source name: ASZ001 murine BCC cell line Platform: GPL13112 Series: GSE156764 GSE156855 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8999014 Sample Accession: GSM4743656 ID: 304743656 8705. ATAC-seq ASZ_con_rep1 Organism: Mus musculus Source name: ASZ001 murine BCC cell line Platform: GPL13112 Series: GSE156764 GSE156855 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4743nnn/GSM4743655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8999013 Sample Accession: GSM4743655 ID: 304743655 8706. spH2A.W.4A_rep2 (ATAC-seq) Organism: Schizosaccharomyces pombe Source name: yeast Platform: GPL23689 Series: GSE152081 GSE152086 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8507295 Sample Accession: GSM4602761 ID: 304602761 8707. spH2A.W.4A_rep1 (ATAC-seq) Organism: Schizosaccharomyces pombe Source name: yeast Platform: GPL23689 Series: GSE152081 GSE152086 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8507294 Sample Accession: GSM4602760 ID: 304602760 8708. spH2A.W_rep2 (ATAC-seq) Organism: Schizosaccharomyces pombe Source name: yeast Platform: GPL23689 Series: GSE152081 GSE152086 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8507293 Sample Accession: GSM4602759 ID: 304602759 8709. spH2A.W_rep1 (ATAC-seq) Organism: Schizosaccharomyces pombe Source name: yeast Platform: GPL23689 Series: GSE152081 GSE152086 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8507292 Sample Accession: GSM4602758 ID: 304602758 8710. WT_rep2 (ATAC-seq) Organism: Schizosaccharomyces pombe Source name: yeast Platform: GPL23689 Series: GSE152081 GSE152086 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8507291 Sample Accession: GSM4602757 ID: 304602757 8711. WT_rep1 (ATAC-seq) Organism: Schizosaccharomyces pombe Source name: yeast Platform: GPL23689 Series: GSE152081 GSE152086 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8507290 Sample Accession: GSM4602756 ID: 304602756 8712. Maize_B73_ATAC_root_rep2 Organism: Zea mays Source name: B73 Root Platform: GPL20156 Series: GSE152046 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4600nnn/GSM4600941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8499541 Sample Accession: GSM4600941 ID: 304600941 8713. Maize_B73_ATAC_root_rep1 Organism: Zea mays Source name: B73 Root Platform: GPL20156 Series: GSE152046 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4600nnn/GSM4600940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8499540 Sample Accession: GSM4600940 ID: 304600940 8714. Sostdc1 ko Tfr ATAC-seq Organism: Mus musculus Source name: draining lymph nodes Platform: GPL21273 Series: GSE142523 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4231nnn/GSM4231282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7433641 Sample Accession: GSM4231282 ID: 304231282 8715. WT Tfr ATAC-seq Organism: Mus musculus Source name: draining lymph nodes Platform: GPL21273 Series: GSE142523 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4231nnn/GSM4231281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7433640 Sample Accession: GSM4231281 ID: 304231281 8716. Infnar_mm__P7_HSC_Y5 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108021 ID: 304108021 8717. Infnar_mm__P7_HSC_Y4 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108020 ID: 304108020 8718. Infnar_mm__P7_48+LSK_U3 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108019 ID: 304108019 8719. Infnar_mm__P7_48+LSK_Y2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108018 ID: 304108018 8720. Infnar_mm__P7_48+LSK_Y1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108017 ID: 304108017 8721. BA_P7_HSC_U6 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108016 ID: 304108016 8722. BA_P7_HSC_U5 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108015 ID: 304108015 8723. BA_P7_HSC_U4 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108014 ID: 304108014 8724. BA_P7_48+LSK_U3 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108013 ID: 304108013 8725. BA_P7_48+LSK_U2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108012 ID: 304108012 8726. BA_P7_48+LSK_U1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 Sample Accession: GSM4108011 ID: 304108011 8727. Adult_HPC_WT-3 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565483 Sample Accession: GSM3684474 ID: 303684474 8728. Adult_HPC_WT-2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565482 Sample Accession: GSM3684473 ID: 303684473 8729. Adult_HPC_WT-1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565481 Sample Accession: GSM3684472 ID: 303684472 8730. P21_HPC-2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565480 Sample Accession: GSM3684471 ID: 303684471 8731. P21_HPC-1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565479 Sample Accession: GSM3684470 ID: 303684470 8732. P14_HPC-2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565478 Sample Accession: GSM3684469 ID: 303684469 8733. P14_HPC-1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565477 Sample Accession: GSM3684468 ID: 303684468 8734. P7_HPC-3 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565476 Sample Accession: GSM3684467 ID: 303684467 8735. P7_HPC-2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565475 Sample Accession: GSM3684466 ID: 303684466 8736. P7_HPC-1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565474 Sample Accession: GSM3684465 ID: 303684465 8737. Fetal_HPC-3 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565473 Sample Accession: GSM3684464 ID: 303684464 8738. Fetal_HPC-2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565472 Sample Accession: GSM3684463 ID: 303684463 8739. Fetal_HPC-1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic progenitor cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565471 Sample Accession: GSM3684462 ID: 303684462 8740. adult_HSC_WT-5 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565470 Sample Accession: GSM3684461 ID: 303684461 8741. adult_HSC_WT-4 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565469 Sample Accession: GSM3684460 ID: 303684460 8742. adult_HSC_WT-3 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565468 Sample Accession: GSM3684459 ID: 303684459 8743. adult_HSC_WT-2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565467 Sample Accession: GSM3684458 ID: 303684458 8744. adult_HSC_WT-1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565466 Sample Accession: GSM3684457 ID: 303684457 8745. P14_HSC-3 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565465 Sample Accession: GSM3684456 ID: 303684456 8746. P14_HSC-2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565464 Sample Accession: GSM3684455 ID: 303684455 8747. P14_HSC-1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565463 Sample Accession: GSM3684454 ID: 303684454 8748. fetal_HSC-3 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565462 Sample Accession: GSM3684453 ID: 303684453 8749. fetal_HSC-2 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565461 Sample Accession: GSM3684452 ID: 303684452 8750. fetal_HSC-1 ATAC-seq Organism: Mus musculus Source name: Hematopoietic stem cell Platform: GPL17021 Series: GSE128758 GSE128762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5565460 Sample Accession: GSM3684451 ID: 303684451 8751. Donor 2 D0 ATAC-seq Organism: Homo sapiens Source name: Purified AT2 alveolar epithelial cells Platform: GPL11154 Series: GSE143145 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4250nnn/GSM4250944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7503543 Sample Accession: GSM4250944 ID: 304250944 8752. ATAC-seq_Jurkat_GSI_washout Organism: Homo sapiens Source name: Jurkat Platform: GPL18573 Series: GSE130140 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148442/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099122 Sample Accession: GSM4148442 ID: 304148442 8753. ATAC-seq_Jurkat_GSI_3d Organism: Homo sapiens Source name: Jurkat Platform: GPL18573 Series: GSE130140 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148441/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099121 Sample Accession: GSM4148441 ID: 304148441 8754. ATAC-seq_Jurkat_DMSO Organism: Homo sapiens Source name: Jurkat Platform: GPL18573 Series: GSE130140 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099120 Sample Accession: GSM4148440 ID: 304148440 8755. ATACseq_EedcKO_1 Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE135880 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4451nnn/GSM4451359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8047492 Sample Accession: GSM4451359 ID: 304451359 8756. ATACseq_Control_1 Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE135880 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4451nnn/GSM4451358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8047491 Sample Accession: GSM4451358 ID: 304451358 8757. ATACseq_EedcKO Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE135880 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4037nnn/GSM4037069/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6720804 Sample Accession: GSM4037069 ID: 304037069 8758. ATACseq_Control Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE135880 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4037nnn/GSM4037068/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6720803 Sample Accession: GSM4037068 ID: 304037068 8759. TKO.TSA_ATAC_REP4 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850077 Sample Accession: GSM3772726 ID: 303772726 8760. TKO.DMSO_ATAC_REP4 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850076 Sample Accession: GSM3772725 ID: 303772725 8761. J1.TSA_ATAC_REP4 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850075 Sample Accession: GSM3772724 ID: 303772724 8762. J1.DMSO_ATAC_REP4 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850074 Sample Accession: GSM3772723 ID: 303772723 8763. TKO.TSA_ATAC_REP3 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850073 Sample Accession: GSM3772722 ID: 303772722 8764. TKO.DMSO_ATAC_REP3 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850072 Sample Accession: GSM3772721 ID: 303772721 8765. J1.TSA_ATAC_REP3 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850071 Sample Accession: GSM3772720 ID: 303772720 8766. J1.DMSO_ATAC_REP3 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850070 Sample Accession: GSM3772719 ID: 303772719 8767. TKO.TSA_ATAC_REP2 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850069 Sample Accession: GSM3772718 ID: 303772718 8768. TKO.DMSO_ATAC_REP2 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850068 Sample Accession: GSM3772717 ID: 303772717 8769. J1.TSA_ATAC_REP2 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850067 Sample Accession: GSM3772716 ID: 303772716 8770. J1.DMSO_ATAC_REP2 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850066 Sample Accession: GSM3772715 ID: 303772715 8771. TKO.TSA_ATAC_REP1 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850065 Sample Accession: GSM3772714 ID: 303772714 8772. TKO.DMSO_ATAC_REP1 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850064 Sample Accession: GSM3772713 ID: 303772713 8773. J1.TSA_ATAC_REP1 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850063 Sample Accession: GSM3772712 ID: 303772712 8774. J1.DMSO_ATAC_REP1 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE131366 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5850062 Sample Accession: GSM3772711 ID: 303772711 8775. D14 Large Wound Center scATAC-Seq Organism: Mus musculus Source name: 14 days post injury skin wound Platform: GPL21103 Series: GSE131600 GSE155678 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3790nnn/GSM3790766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5880163 Sample Accession: GSM3790766 ID: 303790766 8776. ATAC_AH31 Organism: Homo sapiens Source name: monocytes from human donnor with Acute on Chronic Liver Failure Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640545 Sample Accession: GSM4002733 ID: 304002733 8777. ATAC_AH32 Organism: Homo sapiens Source name: monocytes from human donnor with Acute on Chronic Liver Failure Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640544 Sample Accession: GSM4002732 ID: 304002732 8778. ATAC_AH17 Organism: Homo sapiens Source name: monocytes from human donnor with Acute on Chronic Liver Failure Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640543 Sample Accession: GSM4002731 ID: 304002731 8779. ATAC_AH30 Organism: Homo sapiens Source name: monocytes from human donnor with Acute on Chronic Liver Failure Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640542 Sample Accession: GSM4002730 ID: 304002730 8780. ATAC_AH49 Organism: Homo sapiens Source name: monocytes from human donnor with Severe Alcoholic Hepatitis Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640541 Sample Accession: GSM4002729 ID: 304002729 8781. ATAC_AH19 Organism: Homo sapiens Source name: monocytes from human donnor with Severe Alcoholic Hepatitis Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640540 Sample Accession: GSM4002728 ID: 304002728 8782. ATAC_AH37 Organism: Homo sapiens Source name: monocytes from human donnor with Severe Alcoholic Hepatitis Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640539 Sample Accession: GSM4002727 ID: 304002727 8783. ATAC_AH21 Organism: Homo sapiens Source name: monocytes from human donnor with Severe Alcoholic Hepatitis Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640538 Sample Accession: GSM4002726 ID: 304002726 8784. ATAC_AH15 Organism: Homo sapiens Source name: monocytes from human donnor with Severe Alcoholic Hepatitis Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640537 Sample Accession: GSM4002725 ID: 304002725 8785. ATAC_HC57 Organism: Homo sapiens Source name: monocytes from healthy human donnor Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640536 Sample Accession: GSM4002724 ID: 304002724 8786. ATAC_HC56 Organism: Homo sapiens Source name: monocytes from healthy human donnor Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640535 Sample Accession: GSM4002723 ID: 304002723 8787. ATAC_HC50 Organism: Homo sapiens Source name: monocytes from healthy human donnor Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640534 Sample Accession: GSM4002722 ID: 304002722 8788. ATAC_HC47 Organism: Homo sapiens Source name: monocytes from healthy human donnor Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640533 Sample Accession: GSM4002721 ID: 304002721 8789. ATAC_HC40 Organism: Homo sapiens Source name: monocytes from healthy human donnor Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640532 Sample Accession: GSM4002720 ID: 304002720 8790. ATAC_HC38 Organism: Homo sapiens Source name: monocytes from healthy human donnor Platform: GPL24676 Series: GSE135284 GSE135286 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640531 Sample Accession: GSM4002719 ID: 304002719 8791. H9ESC_BA_Day24 [ATAC-seq] Organism: Homo sapiens Source name: Derived from human embryonic stem cells (WA09 WiCell, WAe009-A) Platform: GPL18573 Series: GSE131169 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213700 Sample Accession: GSM4506448 ID: 304506448 8792. H9ESC_BA_Day20 [ATAC-seq] Organism: Homo sapiens Source name: Derived from human embryonic stem cells (WA09 WiCell, WAe009-A) Platform: GPL18573 Series: GSE131169 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506447/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213699 Sample Accession: GSM4506447 ID: 304506447 8793. H9ESC_BA_Day15 [ATAC-seq] Organism: Homo sapiens Source name: Derived from human embryonic stem cells (WA09 WiCell, WAe009-A) Platform: GPL18573 Series: GSE131169 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213698 Sample Accession: GSM4506446 ID: 304506446 8794. H9ESC_BA_Day8 [ATAC-seq] Organism: Homo sapiens Source name: Derived from human embryonic stem cells (WA09 WiCell, WAe009-A) Platform: GPL18573 Series: GSE131169 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213697 Sample Accession: GSM4506445 ID: 304506445 8795. H9ESC_BA_Day4 [ATAC-seq] Organism: Homo sapiens Source name: Derived from human embryonic stem cells (WA09 WiCell, WAe009-A) Platform: GPL18573 Series: GSE131169 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213696 Sample Accession: GSM4506444 ID: 304506444 8796. H9ESC_PM [ATAC-seq] Organism: Homo sapiens Source name: Derived from human embryonic stem cells (WA09 WiCell, WAe009-A) Platform: GPL18573 Series: GSE131169 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4506nnn/GSM4506443/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8213695 Sample Accession: GSM4506443 ID: 304506443 8797. mESC_EPZ_ATAC_rep3 Organism: Mus musculus Source name: mouse embryionic stem cells Platform: GPL24247 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4579nnn/GSM4579149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8428267 Sample Accession: GSM4579149 ID: 304579149 8798. mESC_EPZ_ATAC_rep2 Organism: Mus musculus Source name: mouse embryionic stem cells Platform: GPL24247 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4579nnn/GSM4579148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8428266 Sample Accession: GSM4579148 ID: 304579148 8799. mESC_EPZ_ATAC_rep1 Organism: Mus musculus Source name: mouse embryionic stem cells Platform: GPL24247 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4579nnn/GSM4579147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8428265 Sample Accession: GSM4579147 ID: 304579147 8800. mESC_DMSO_ATAC_rep3 Organism: Mus musculus Source name: mouse embryionic stem cells Platform: GPL24247 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4579nnn/GSM4579146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8428264 Sample Accession: GSM4579146 ID: 304579146 8801. mESC_DMSO_ATAC_rep2 Organism: Mus musculus Source name: mouse embryionic stem cells Platform: GPL24247 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4579nnn/GSM4579145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8428263 Sample Accession: GSM4579145 ID: 304579145 8802. mESC_DMSO_ATAC_rep1 Organism: Mus musculus Source name: mouse embryionic stem cells Platform: GPL24247 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4579nnn/GSM4579144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8428262 Sample Accession: GSM4579144 ID: 304579144 8803. NPC48h_EPZ_ATAC_rep2 Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21493 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4005nnn/GSM4005243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6647272 Sample Accession: GSM4005243 ID: 304005243 8804. NPC48h_EPZ_ATAC_rep1 Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21493 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4005nnn/GSM4005242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6647271 Sample Accession: GSM4005242 ID: 304005242 8805. NPC48h_DMSO_ATAC_rep2 Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21493 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4005nnn/GSM4005241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6647270 Sample Accession: GSM4005241 ID: 304005241 8806. NPC48h_DMSO_ATAC_rep1 Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21493 Series: GSE135318 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4005nnn/GSM4005240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6647269 Sample Accession: GSM4005240 ID: 304005240 8807. RNAseq.HC1.D78.Rep3 Organism: Homo sapiens Source name: RNAseq.HC1.D78 Platform: GPL18573 Series: GSE145073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705722 Sample Accession: GSM4306161 ID: 304306161 8808. RNAseq.HC1.D78.Rep2 Organism: Homo sapiens Source name: RNAseq.HC1.D78 Platform: GPL18573 Series: GSE145073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705721 Sample Accession: GSM4306160 ID: 304306160 8809. RNAseq.HC1.D78.Rep1 Organism: Homo sapiens Source name: RNAseq.HC1.D78 Platform: GPL18573 Series: GSE145073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705720 Sample Accession: GSM4306159 ID: 304306159 8810. RNAseq.HC1.D50.Rep2 Organism: Homo sapiens Source name: RNAseq.HC1.D50 Platform: GPL18573 Series: GSE145073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705719 Sample Accession: GSM4306158 ID: 304306158 8811. RNAseq.HC1.D50.Rep1 Organism: Homo sapiens Source name: RNAseq.HC1.D50 Platform: GPL18573 Series: GSE145073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705718 Sample Accession: GSM4306157 ID: 304306157 8812. RNAseq.HC1.D22.Rep3 Organism: Homo sapiens Source name: RNAseq.HC1.D22 Platform: GPL18573 Series: GSE145073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705717 Sample Accession: GSM4306156 ID: 304306156 8813. RNAseq.HC1.D22.Rep2 Organism: Homo sapiens Source name: RNAseq.HC1.D22 Platform: GPL18573 Series: GSE145073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705716 Sample Accession: GSM4306155 ID: 304306155 8814. RNAseq.HC1.D22.Rep1 Organism: Homo sapiens Source name: RNAseq.HC1.D22 Platform: GPL18573 Series: GSE145073 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705715 Sample Accession: GSM4306154 ID: 304306154 8815. ATACseq.HC2.D78.Rep3 Organism: Homo sapiens Source name: ATACseq.HC2.D78 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705714 Sample Accession: GSM4306153 ID: 304306153 8816. ATACseq.HC2.D78.Rep2 Organism: Homo sapiens Source name: ATACseq.HC2.D78 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705713 Sample Accession: GSM4306152 ID: 304306152 8817. ATACseq.HC2.D78.Rep1 Organism: Homo sapiens Source name: ATACseq.HC2.D78 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705712 Sample Accession: GSM4306151 ID: 304306151 8818. ATACseq.HC2.D50.Rep3 Organism: Homo sapiens Source name: ATACseq.HC2.D50 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705711 Sample Accession: GSM4306150 ID: 304306150 8819. ATACseq.HC2.D50.Rep2 Organism: Homo sapiens Source name: ATACseq.HC2.D50 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705710 Sample Accession: GSM4306149 ID: 304306149 8820. ATACseq.HC2.D50.Rep1 Organism: Homo sapiens Source name: ATACseq.HC2.D50 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705709 Sample Accession: GSM4306148 ID: 304306148 8821. ATACseq.HC2.D22.Rep2 Organism: Homo sapiens Source name: ATACseq.HC2.D22 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705708 Sample Accession: GSM4306147 ID: 304306147 8822. ATACseq.HC2.D22.Rep1 Organism: Homo sapiens Source name: ATACseq.HC2.D22 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705707 Sample Accession: GSM4306146 ID: 304306146 8823. ATACseq.HC1.D78.Rep3 Organism: Homo sapiens Source name: ATACseq.HC1.D78 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705706 Sample Accession: GSM4306145 ID: 304306145 8824. ATACseq.HC1.D78.Rep2 Organism: Homo sapiens Source name: ATACseq.HC1.D78 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705705 Sample Accession: GSM4306144 ID: 304306144 8825. ATACseq.HC1.D78.Rep1 Organism: Homo sapiens Source name: ATACseq.HC1.D78 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705704 Sample Accession: GSM4306143 ID: 304306143 8826. ATACseq.HC1.D50.Rep3 Organism: Homo sapiens Source name: ATACseq.HC1.D50 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705703 Sample Accession: GSM4306142 ID: 304306142 8827. ATACseq.HC1.D50.Rep2 Organism: Homo sapiens Source name: ATACseq.HC1.D50 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705702 Sample Accession: GSM4306141 ID: 304306141 8828. ATACseq.HC1.D50.Rep1 Organism: Homo sapiens Source name: ATACseq.HC1.D50 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705701 Sample Accession: GSM4306140 ID: 304306140 8829. ATACseq.HC1.D22.Rep3 Organism: Homo sapiens Source name: ATACseq.HC1.D22 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705700 Sample Accession: GSM4306139 ID: 304306139 8830. ATACseq.HC1.D22.Rep2 Organism: Homo sapiens Source name: ATACseq.HC1.D22 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705699 Sample Accession: GSM4306138 ID: 304306138 8831. ATACseq.HC1.D22.Rep1 Organism: Homo sapiens Source name: ATACseq.HC1.D22 Platform: GPL16791 Series: GSE145073 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4306nnn/GSM4306137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7705698 Sample Accession: GSM4306137 ID: 304306137 8832. ATAC_seq_KC_ZT22_KO_rep4 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546649 Sample Accession: GSM4261423 ID: 304261423 8833. ATAC_seq_KC_ZT22_KO_rep3 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546648 Sample Accession: GSM4261422 ID: 304261422 8834. ATAC_seq_KC_ZT22_KO_rep2 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546647 Sample Accession: GSM4261421 ID: 304261421 8835. ATAC_seq_KC_ZT22_KO_rep1 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546646 Sample Accession: GSM4261420 ID: 304261420 8836. ATAC_seq_KC_ZT10_KO_rep4 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546645 Sample Accession: GSM4261419 ID: 304261419 8837. ATAC_seq_KC_ZT10_KO_rep3 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546644 Sample Accession: GSM4261418 ID: 304261418 8838. ATAC_seq_KC_ZT10_KO_rep2 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546643 Sample Accession: GSM4261417 ID: 304261417 8839. ATAC_seq_KC_ZT10_KO_rep1 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546642 Sample Accession: GSM4261416 ID: 304261416 8840. ATAC_seq_KC_ZT22_WT_rep4 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546641 Sample Accession: GSM4261415 ID: 304261415 8841. ATAC_seq_KC_ZT22_WT_rep3 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546640 Sample Accession: GSM4261414 ID: 304261414 8842. ATAC_seq_KC_ZT22_WT_rep2 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546639 Sample Accession: GSM4261413 ID: 304261413 8843. ATAC_seq_KC_ZT22_WT_rep1 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546638 Sample Accession: GSM4261412 ID: 304261412 8844. ATAC_seq_KC_ZT10_WT_rep4 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546637 Sample Accession: GSM4261411 ID: 304261411 8845. ATAC_seq_KC_ZT10_WT_rep3 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546636 Sample Accession: GSM4261410 ID: 304261410 8846. ATAC_seq_KC_ZT10_WT_rep2 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546635 Sample Accession: GSM4261409 ID: 304261409 8847. ATAC_seq_KC_ZT10_WT_rep1 Organism: Mus musculus Source name: Kupffer cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546634 Sample Accession: GSM4261408 ID: 304261408 8848. ATAC_seq_EC_ZT22_KO_rep4 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546633 Sample Accession: GSM4261407 ID: 304261407 8849. ATAC_seq_EC_ZT22_KO_rep3 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546632 Sample Accession: GSM4261406 ID: 304261406 8850. ATAC_seq_EC_ZT22_KO_rep2 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546631 Sample Accession: GSM4261405 ID: 304261405 8851. ATAC_seq_EC_ZT22_KO_rep1 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546630 Sample Accession: GSM4261404 ID: 304261404 8852. ATAC_seq_EC_ZT10_KO_rep4 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546629 Sample Accession: GSM4261403 ID: 304261403 8853. ATAC_seq_EC_ZT10_KO_rep3 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546628 Sample Accession: GSM4261402 ID: 304261402 8854. ATAC_seq_EC_ZT10_KO_rep2 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546627 Sample Accession: GSM4261401 ID: 304261401 8855. ATAC_seq_EC_ZT10_KO_rep1 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546626 Sample Accession: GSM4261400 ID: 304261400 8856. ATAC_seq_EC_ZT22_WT_rep4 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546625 Sample Accession: GSM4261399 ID: 304261399 8857. ATAC_seq_EC_ZT22_WT_rep3 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546624 Sample Accession: GSM4261398 ID: 304261398 8858. ATAC_seq_EC_ZT22_WT_rep2 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546623 Sample Accession: GSM4261397 ID: 304261397 8859. ATAC_seq_EC_ZT22_WT_rep1 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546622 Sample Accession: GSM4261396 ID: 304261396 8860. ATAC_seq_EC_ZT10_WT_rep4 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546621 Sample Accession: GSM4261395 ID: 304261395 8861. ATAC_seq_EC_ZT10_WT_rep3 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546620 Sample Accession: GSM4261394 ID: 304261394 8862. ATAC_seq_EC_ZT10_WT_rep2 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546619 Sample Accession: GSM4261393 ID: 304261393 8863. ATAC_seq_EC_ZT10_WT_rep1 Organism: Mus musculus Source name: Endothelial cells Platform: GPL19057 Series: GSE143525 GSE143528 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7546618 Sample Accession: GSM4261392 ID: 304261392 8864. plc-WT atac-seq Organism: Homo sapiens Source name: Hepatocellular carcinoma cells Platform: GPL20795 Series: GSE138781 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6981281 Sample Accession: GSM4119259 ID: 304119259 8865. plc-mu atac-seq Organism: Homo sapiens Source name: Hepatocellular carcinoma cells Platform: GPL20795 Series: GSE138781 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6981280 Sample Accession: GSM4119258 ID: 304119258 8866. ATAC seq HPC donor CB D3 Organism: Homo sapiens Source name: Human cord blood CD34+ Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383211 Sample Accession: GSM4565966 ID: 304565966 8867. ATAC seq HPC donor CB D2 Organism: Homo sapiens Source name: Human cord blood CD34+ Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383210 Sample Accession: GSM4565965 ID: 304565965 8868. ATAC seq HPC donor CB D1 Organism: Homo sapiens Source name: Human cord blood CD34+ Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383209 Sample Accession: GSM4565964 ID: 304565964 8869. ATAC seq gamma delta CD1- donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383208 Sample Accession: GSM4565963 ID: 304565963 8870. ATAC seq gamma delta CD1+ donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383207 Sample Accession: GSM4565962 ID: 304565962 8871. ATAC seq SP CD8+ donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383206 Sample Accession: GSM4565961 ID: 304565961 8872. ATAC seq SP CD4+ donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383205 Sample Accession: GSM4565960 ID: 304565960 8873. ATAC seq DP CD3+ donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383204 Sample Accession: GSM4565959 ID: 304565959 8874. ATAC seq DP CD3- donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383203 Sample Accession: GSM4565958 ID: 304565958 8875. ATAC seq ISP CD28+ donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383202 Sample Accession: GSM4565957 ID: 304565957 8876. ATAC seq CD34+ CD4+ donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383201 Sample Accession: GSM4565956 ID: 304565956 8877. ATAC seq CD34+ CD1+ donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383200 Sample Accession: GSM4565955 ID: 304565955 8878. ATAC seq CD34+ CD1- donor D2 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383199 Sample Accession: GSM4565954 ID: 304565954 8879. ATAC seq gamma delta CD1- donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383198 Sample Accession: GSM4565953 ID: 304565953 8880. ATAC seq gamma delta CD1+ donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383197 Sample Accession: GSM4565952 ID: 304565952 8881. ATAC seq SP CD8+ donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383196 Sample Accession: GSM4565951 ID: 304565951 8882. ATAC seq SP CD4+ donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383195 Sample Accession: GSM4565950 ID: 304565950 8883. ATAC seq DP CD3+ donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383194 Sample Accession: GSM4565949 ID: 304565949 8884. ATAC seq DP CD3- donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383193 Sample Accession: GSM4565948 ID: 304565948 8885. ATAC seq ISP CD28+ donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383192 Sample Accession: GSM4565947 ID: 304565947 8886. ATAC seq CD34+ CD4+ donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383191 Sample Accession: GSM4565946 ID: 304565946 8887. ATAC seq CD34+ CD1+ donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383190 Sample Accession: GSM4565945 ID: 304565945 8888. ATAC seq CD34+ CD1- donor D1 Organism: Homo sapiens Source name: Human postnatal thymus Platform: GPL18573 Series: GSE151075 GSE151081 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8383189 Sample Accession: GSM4565944 ID: 304565944 8889. K4H ATAC-Seq Organism: Rattus norvegicus Source name: Hippocampal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342847 Sample Accession: GSM4552867 ID: 304552867 8890. K4C ATAC-Seq Organism: Rattus norvegicus Source name: Cortical neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342846 Sample Accession: GSM4552866 ID: 304552866 8891. K3S ATAC-Seq Organism: Rattus norvegicus Source name: Striatal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342845 Sample Accession: GSM4552865 ID: 304552865 8892. K3C ATAC-Seq Organism: Rattus norvegicus Source name: Cortical neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342844 Sample Accession: GSM4552864 ID: 304552864 8893. K2S ATAC-Seq Organism: Rattus norvegicus Source name: Striatal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342843 Sample Accession: GSM4552863 ID: 304552863 8894. K2H ATAC-Seq Organism: Rattus norvegicus Source name: Hippocampal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342842 Sample Accession: GSM4552862 ID: 304552862 8895. K2C ATAC-Seq Organism: Rattus norvegicus Source name: Cortical neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342841 Sample Accession: GSM4552861 ID: 304552861 8896. K1S ATAC-Seq Organism: Rattus norvegicus Source name: Striatal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342840 Sample Accession: GSM4552860 ID: 304552860 8897. K1H ATAC-Seq Organism: Rattus norvegicus Source name: Hippocampal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342839 Sample Accession: GSM4552859 ID: 304552859 8898. V4S ATAC-Seq Organism: Rattus norvegicus Source name: Striatal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342838 Sample Accession: GSM4552858 ID: 304552858 8899. V4H ATAC-Seq Organism: Rattus norvegicus Source name: Hippocampal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342837 Sample Accession: GSM4552857 ID: 304552857 8900. V3C ATAC-Seq Organism: Rattus norvegicus Source name: Cortical neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342836 Sample Accession: GSM4552856 ID: 304552856 8901. V2S ATAC-Seq Organism: Rattus norvegicus Source name: Striatal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342835 Sample Accession: GSM4552855 ID: 304552855 8902. V2H ATAC-Seq Organism: Rattus norvegicus Source name: Hippocampal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342834 Sample Accession: GSM4552854 ID: 304552854 8903. V2C ATAC-Seq Organism: Rattus norvegicus Source name: Cortical neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342833 Sample Accession: GSM4552853 ID: 304552853 8904. V1S ATAC-Seq Organism: Rattus norvegicus Source name: Striatal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342832 Sample Accession: GSM4552852 ID: 304552852 8905. V1H ATAC-Seq Organism: Rattus norvegicus Source name: Hippocampal neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342831 Sample Accession: GSM4552851 ID: 304552851 8906. V1C ATAC-Seq Organism: Rattus norvegicus Source name: Cortical neuron culture Platform: GPL20084 Series: GSE150589 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8342830 Sample Accession: GSM4552850 ID: 304552850 8907. ATAC_input Organism: Mus musculus Source name: ATAC-seq input Platform: GPL17021 Series: GSE155058 GSE155089 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8818177 Sample Accession: GSM4694522 ID: 304694522 8908. ATAC-Seq_SU-DHL-4-2 Organism: Homo sapiens Source name: B lymphocyte; metastatic to peritoneal effusion Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023042 Sample Accession: GSM4130916 ID: 304130916 8909. ATAC-Seq_SU-DHL-4-1 Organism: Homo sapiens Source name: B lymphocyte; metastatic to peritoneal effusion Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023041 Sample Accession: GSM4130915 ID: 304130915 8910. ATAC-Seq_SU-DHL-2-2 Organism: Homo sapiens Source name: Lymph node; metastatic to peritoneal effusion Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023040 Sample Accession: GSM4130914 ID: 304130914 8911. ATAC-Seq_SU-DHL-2-1 Organism: Homo sapiens Source name: Lymph node; metastatic to peritoneal effusion Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023039 Sample Accession: GSM4130913 ID: 304130913 8912. ATAC-Seq_NP-2 Organism: Homo sapiens Source name: Neural progenitor Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023038 Sample Accession: GSM4130912 ID: 304130912 8913. ATAC-Seq_NP-1 Organism: Homo sapiens Source name: Neural progenitor Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023037 Sample Accession: GSM4130911 ID: 304130911 8914. ATAC-Seq_H1437-2 Organism: Homo sapiens Source name: lung; metastatic site to pleural effusion Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130910/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023036 Sample Accession: GSM4130910 ID: 304130910 8915. ATAC-Seq_H1437-1 Organism: Homo sapiens Source name: lung; metastatic site to pleural effusion Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130909/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023035 Sample Accession: GSM4130909 ID: 304130909 8916. ATAC-Seq_MSLCL-2 Organism: Homo sapiens Source name: B cell; lymphoblastoid Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130908/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023034 Sample Accession: GSM4130908 ID: 304130908 8917. ATAC-Seq_MSLCL-1 Organism: Homo sapiens Source name: B cell; lymphoblastoid Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130907/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023033 Sample Accession: GSM4130907 ID: 304130907 8918. ATAC-Seq_MSIPS-2 Organism: Homo sapiens Source name: iPS Line Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130906/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023032 Sample Accession: GSM4130906 ID: 304130906 8919. ATAC-Seq_MSIPS-1 Organism: Homo sapiens Source name: iPS Line Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023031 Sample Accession: GSM4130905 ID: 304130905 8920. ATAC-Seq_MSFIB-1 Organism: Homo sapiens Source name: skin; fibroblast Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023030 Sample Accession: GSM4130904 ID: 304130904 8921. ATAC-Seq_MCF7-2 Organism: Homo sapiens Source name: mammary gland; metastatic to pleural effusion Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023029 Sample Accession: GSM4130903 ID: 304130903 8922. ATAC-Seq_MCF7-1 Organism: Homo sapiens Source name: mammary gland; metastatic to pleural effusion Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023028 Sample Accession: GSM4130902 ID: 304130902 8923. ATAC-Seq_LX-2 Organism: Homo sapiens Source name: Liver cell Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023027 Sample Accession: GSM4130901 ID: 304130901 8924. ATAC-Seq_LX-1 Organism: Homo sapiens Source name: Liver cell Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023026 Sample Accession: GSM4130900 ID: 304130900 8925. ATAC-Seq_LNCAP-2 Organism: Homo sapiens Source name: prostate; metastatic site to lymph node Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023025 Sample Accession: GSM4130899 ID: 304130899 8926. ATAC-Seq_LNCAP-1 Organism: Homo sapiens Source name: prostate; metastatic site to lymph node Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023024 Sample Accession: GSM4130898 ID: 304130898 8927. ATAC-Seq_KU19-2 Organism: Homo sapiens Source name: urinary bladder transitional cell Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023023 Sample Accession: GSM4130897 ID: 304130897 8928. ATAC-Seq_KU19-1 Organism: Homo sapiens Source name: urinary bladder transitional cell Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023022 Sample Accession: GSM4130896 ID: 304130896 8929. ATAC-Seq_K562-2 Organism: Homo sapiens Source name: bone marrow Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023021 Sample Accession: GSM4130895 ID: 304130895 8930. ATAC-Seq_K562-1 Organism: Homo sapiens Source name: bone marrow Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023020 Sample Accession: GSM4130894 ID: 304130894 8931. ATAC-Seq_K1-1 Organism: Homo sapiens Source name: Thryoid Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023019 Sample Accession: GSM4130893 ID: 304130893 8932. ATAC-Seq_Jurkat-1 Organism: Homo sapiens Source name: T lymphocyte Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023018 Sample Accession: GSM4130892 ID: 304130892 8933. ATAC-Seq_hTERT-HME1-2 Organism: Homo sapiens Source name: mammary gland Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023017 Sample Accession: GSM4130891 ID: 304130891 8934. ATAC-Seq_hTERT-HME1-1 Organism: Homo sapiens Source name: mammary gland Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023016 Sample Accession: GSM4130890 ID: 304130890 8935. ATAC-Seq_H1376-2 Organism: Homo sapiens Source name: urinary bladder Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023015 Sample Accession: GSM4130889 ID: 304130889 8936. ATAC-Seq_H1376-1 Organism: Homo sapiens Source name: urinary bladder Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130888/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023014 Sample Accession: GSM4130888 ID: 304130888 8937. ATAC-Seq_HepG2-1 Organism: Homo sapiens Source name: liver Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023013 Sample Accession: GSM4130887 ID: 304130887 8938. ATAC-Seq_H9-hESC-2 Organism: Homo sapiens Source name: Embryonic Stem Cell Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130886/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023012 Sample Accession: GSM4130886 ID: 304130886 8939. ATAC-Seq_H9-hESC-1 Organism: Homo sapiens Source name: Embryonic Stem Cell Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023011 Sample Accession: GSM4130885 ID: 304130885 8940. ATAC-Seq_H1-hESC-2 Organism: Homo sapiens Source name: Embryonic Stem Cell Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023010 Sample Accession: GSM4130884 ID: 304130884 8941. ATAC-Seq_H1-hESC-1 Organism: Homo sapiens Source name: Embryonic Stem Cell Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023009 Sample Accession: GSM4130883 ID: 304130883 8942. ATAC-Seq_ARPE-19-2 Organism: Homo sapiens Source name: retinal pigmented epithelium Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023008 Sample Accession: GSM4130882 ID: 304130882 8943. ATAC-Seq_ARPE-19-1 Organism: Homo sapiens Source name: retinal pigmented epithelium Platform: GPL20301 Series: GSE134745 GSE139099 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4130nnn/GSM4130881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023007 Sample Accession: GSM4130881 ID: 304130881 8944. OSKMD5 FLAG #2 (ATAC-seq) Organism: Mus musculus Source name: Mouse MEFs, OSKM day 5 Platform: GPL24247 Series: GSE75005 GSE149500 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8189459 Sample Accession: GSM4503996 ID: 304503996 8945. OSKMD10 FLAG #2 (ATAC-seq) Organism: Mus musculus Source name: Mouse MEFs, OSKM day 10 Platform: GPL24247 Series: GSE75005 GSE149500 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8189458 Sample Accession: GSM4503995 ID: 304503995 8946. MEF #2 (ATAC-seq) Organism: Mus musculus Source name: MEFs Platform: GPL24247 Series: GSE75005 GSE149500 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8189457 Sample Accession: GSM4503994 ID: 304503994 8947. ESC #2 (ATAC-seq) Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE75005 GSE149500 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8189456 Sample Accession: GSM4503993 ID: 304503993 8948. OSKMD5 FLAG #1 (ATAC-seq) Organism: Mus musculus Source name: Mouse MEFs, OSKM day 5 Platform: GPL24247 Series: GSE75005 GSE149500 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8189455 Sample Accession: GSM4503992 ID: 304503992 8949. OSKMD10 FLAG #1 (ATAC-seq) Organism: Mus musculus Source name: Mouse MEFs, OSKM day 10 Platform: GPL24247 Series: GSE75005 GSE149500 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8189454 Sample Accession: GSM4503991 ID: 304503991 8950. MEF #1 (ATAC-seq) Organism: Mus musculus Source name: MEFs Platform: GPL24247 Series: GSE75005 GSE149500 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8189453 Sample Accession: GSM4503990 ID: 304503990 8951. ESC #1 (ATAC-seq) Organism: Mus musculus Source name: ESCs Platform: GPL24247 Series: GSE75005 GSE149500 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8189452 Sample Accession: GSM4503989 ID: 304503989 8952. ATAC-seq_MPP6 Organism: Mus musculus Source name: MPP Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757817 Sample Accession: GSM4676838 ID: 304676838 8953. ATAC-seq_MPP5 Organism: Mus musculus Source name: MPP Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757816 Sample Accession: GSM4676837 ID: 304676837 8954. ATAC-seq_MPP4 Organism: Mus musculus Source name: MPP Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757815 Sample Accession: GSM4676836 ID: 304676836 8955. ATAC-seq_MPP3 Organism: Mus musculus Source name: MPP Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676835/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757814 Sample Accession: GSM4676835 ID: 304676835 8956. ATAC-seq_MPP2 Organism: Mus musculus Source name: MPP Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757813 Sample Accession: GSM4676834 ID: 304676834 8957. ATAC-seq_MPP1 Organism: Mus musculus Source name: MPP Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757812 Sample Accession: GSM4676833 ID: 304676833 8958. ATAC-seq_HSC6 Organism: Mus musculus Source name: HSC Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676832/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757811 Sample Accession: GSM4676832 ID: 304676832 8959. ATAC-seq_HSC5 Organism: Mus musculus Source name: HSC Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676831/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757810 Sample Accession: GSM4676831 ID: 304676831 8960. ATAC-seq_HSC4 Organism: Mus musculus Source name: HSC Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757809 Sample Accession: GSM4676830 ID: 304676830 8961. ATAC-seq_HSC3 Organism: Mus musculus Source name: HSC Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757808 Sample Accession: GSM4676829 ID: 304676829 8962. ATAC-seq_HSC2 Organism: Mus musculus Source name: HSC Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757807 Sample Accession: GSM4676828 ID: 304676828 8963. ATAC-seq_HSC1 Organism: Mus musculus Source name: HSC Platform: GPL19057 Series: GSE126793 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4676nnn/GSM4676827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8757806 Sample Accession: GSM4676827 ID: 304676827 8964. ATAC-seq-Rep2 Organism: Homo sapiens Source name: H7 derived cardiomyocytes Platform: GPL16791 Series: GSE101514 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009249 Sample Accession: GSM2705262 ID: 302705262 8965. ATAC-seq-Rep1 Organism: Homo sapiens Source name: H7 derived cardiomyocytes Platform: GPL16791 Series: GSE101514 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009248 Sample Accession: GSM2705261 ID: 302705261 8966. ATAC-seq in human aortic valve interstitial cells Organism: Homo sapiens Source name: Human aortic valve interstitial cells from non-mineralized aortic valves Platform: GPL20301 Series: GSE154510 GSE154513 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672357/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8740249 Sample Accession: GSM4672357 ID: 304672357 8967. ATAC_R1pro_Ebox_mut_proB_2 Organism: Mus musculus Source name: DP cells (CD4+CD8+CD5–CD69–TCRb– ) Platform: GPL21273 Series: GSE141223 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737119 Sample Accession: GSM4672145 ID: 304672145 8968. ATAC_R1pro_Ebox_Cont_proB_2 Organism: Mus musculus Source name: DP cells (CD4+CD8+CD5–CD69–TCRb– ) Platform: GPL21273 Series: GSE141223 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737118 Sample Accession: GSM4672144 ID: 304672144 8969. ATAC_R1pro_Ebox_mut_DN3_2 Organism: Mus musculus Source name: DN3a cells (CD4–CD8–LinnegCD44–CD25+CD28– ) Platform: GPL21273 Series: GSE141223 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737117 Sample Accession: GSM4672143 ID: 304672143 8970. ATAC_R1pro_Ebox_Cont_DN3_2 Organism: Mus musculus Source name: DN3a cells (CD4–CD8–LinnegCD44–CD25+CD28– ) Platform: GPL21273 Series: GSE141223 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4672nnn/GSM4672142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8737116 Sample Accession: GSM4672142 ID: 304672142 8971. PC3_FOXA2_VEH_L002 Organism: Homo sapiens Source name: PC3 Platform: GPL16791 Series: GSE148982 GSE149007 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8147149 Sample Accession: GSM4486908 ID: 304486908 8972. PC3_FOXA2_VEH_L001 Organism: Homo sapiens Source name: PC3 Platform: GPL16791 Series: GSE148982 GSE149007 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8147148 Sample Accession: GSM4486907 ID: 304486907 8973. PC3_FOXA2_GSK_S11_L002 Organism: Homo sapiens Source name: PC3 Platform: GPL16791 Series: GSE148982 GSE149007 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8147147 Sample Accession: GSM4486906 ID: 304486906 8974. PC3_FOXA2_GSK_S11_L001 Organism: Homo sapiens Source name: PC3 Platform: GPL16791 Series: GSE148982 GSE149007 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8147146 Sample Accession: GSM4486905 ID: 304486905 8975. LN_ATAC_VEH_S1_L002 Organism: Homo sapiens Source name: LNCaP Platform: GPL16791 Series: GSE148925 GSE149007 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8147137 Sample Accession: GSM4486191 ID: 304486191 8976. LN_ATAC_VEH_S1_L001 Organism: Homo sapiens Source name: LNCaP Platform: GPL16791 Series: GSE148925 GSE149007 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8147136 Sample Accession: GSM4486190 ID: 304486190 8977. LN_ATAC_GSK_S2_L002 Organism: Homo sapiens Source name: LNCaP Platform: GPL16791 Series: GSE148925 GSE149007 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8147135 Sample Accession: GSM4486189 ID: 304486189 8978. LN_ATAC_GSK_S2_L001 Organism: Homo sapiens Source name: LNCaP Platform: GPL16791 Series: GSE148925 GSE149007 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8147134 Sample Accession: GSM4486188 ID: 304486188 8979. ATAC-seq_wild.type_12dpp Organism: Mus musculus Source name: Spermatocytes Platform: GPL17021 Series: GSE141850 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348087 Sample Accession: GSM4214719 ID: 304214719 8980. APP/PS1 ATAC-Seq rep3 Organism: Mus musculus Source name: Hippocampus Platform: GPL13112 Series: GSE145906 GSE145908 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7800433 Sample Accession: GSM4339181 ID: 304339181 8981. APP/PS1 ATAC-Seq rep2 Organism: Mus musculus Source name: Hippocampus Platform: GPL13112 Series: GSE145906 GSE145908 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7800432 Sample Accession: GSM4339180 ID: 304339180 8982. APP/PS1 ATAC-Seq rep1 Organism: Mus musculus Source name: Hippocampus Platform: GPL13112 Series: GSE145906 GSE145908 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7800431 Sample Accession: GSM4339179 ID: 304339179 8983. WT ATAC-Seq rep3 Organism: Mus musculus Source name: Hippocampus Platform: GPL13112 Series: GSE145906 GSE145908 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7800430 Sample Accession: GSM4339178 ID: 304339178 8984. WT ATAC-Seq rep2 Organism: Mus musculus Source name: Hippocampus Platform: GPL13112 Series: GSE145906 GSE145908 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7800429 Sample Accession: GSM4339177 ID: 304339177 8985. WT ATAC-Seq rep1 Organism: Mus musculus Source name: Hippocampus Platform: GPL13112 Series: GSE145906 GSE145908 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4339nnn/GSM4339176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7800428 Sample Accession: GSM4339176 ID: 304339176 8986. nTreg_ATACseq_sgBrd9_Replicate2 Organism: Mus musculus Source name: nTregs isolated from Foxp3Thy1.1/Rosa-Cas9 mice Platform: GPL19057 Series: GSE129846 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4610nnn/GSM4610611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8530727 Sample Accession: GSM4610611 ID: 304610611 8987. nTreg_ATACseq_sgBrd9_Replicate1 Organism: Mus musculus Source name: nTregs isolated from Foxp3Thy1.1/Rosa-Cas9 mice Platform: GPL19057 Series: GSE129846 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4610nnn/GSM4610610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8530726 Sample Accession: GSM4610610 ID: 304610610 8988. nTreg_ATACseq_sgNT_Replicate2 Organism: Mus musculus Source name: nTregs isolated from Foxp3Thy1.1/Rosa-Cas9 mice Platform: GPL19057 Series: GSE129846 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4610nnn/GSM4610609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8530725 Sample Accession: GSM4610609 ID: 304610609 8989. nTreg_ATACseq_sgNT_Replicate1 Organism: Mus musculus Source name: nTregs isolated from Foxp3Thy1.1/Rosa-Cas9 mice Platform: GPL19057 Series: GSE129846 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4610nnn/GSM4610608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8530724 Sample Accession: GSM4610608 ID: 304610608 8990. shHMGB1 ATAC-Seq Organism: Mus musculus Source name: AB22 cells plus shHMGB1 Platform: GPL19057 Series: GSE134796 GSE134798 FTP download: GEO (BED, BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3970nnn/GSM3970411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6581653 Sample Accession: GSM3970411 ID: 303970411 8991. shCTRL ATAC-Seq Organism: Mus musculus Source name: AB22 cells plus shCTRL Platform: GPL19057 Series: GSE134796 GSE134798 FTP download: GEO (BED, BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3970nnn/GSM3970410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6581652 Sample Accession: GSM3970410 ID: 303970410 8992. ATAC-seq_Homo rep2 Organism: Mus musculus Source name: bone marrow Platform: GPL21103 Series: GSE148201 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4456nnn/GSM4456040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8068506 Sample Accession: GSM4456040 ID: 304456040 8993. ATAC-seq_Control rep2 Organism: Mus musculus Source name: bone marrow Platform: GPL21103 Series: GSE148201 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4456nnn/GSM4456039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8068505 Sample Accession: GSM4456039 ID: 304456039 8994. ATAC-seq_Homo rep1 Organism: Mus musculus Source name: bone marrow Platform: GPL21103 Series: GSE148201 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4456nnn/GSM4456038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8068504 Sample Accession: GSM4456038 ID: 304456038 8995. ATAC-seq_Control rep1 Organism: Mus musculus Source name: bone marrow Platform: GPL21103 Series: GSE148201 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4456nnn/GSM4456037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8068503 Sample Accession: GSM4456037 ID: 304456037 8996. Tumor derived from resistant CT26 clone-B64_B (ATAC-seq) Organism: Mus musculus Source name: CT26 tumor Platform: GPL13112 Series: GSE139473 GSE139476 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4142nnn/GSM4142060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7064318 Sample Accession: GSM4142060 ID: 304142060 8997. Tumor derived from resistant CT26 clone-B64_A (ATAC-seq) Organism: Mus musculus Source name: CT26 tumor Platform: GPL13112 Series: GSE139473 GSE139476 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4142nnn/GSM4142059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7064317 Sample Accession: GSM4142059 ID: 304142059 8998. Tumor derived from resistant CT26 clone-B04_B (ATAC-seq) Organism: Mus musculus Source name: CT26 tumor Platform: GPL13112 Series: GSE139473 GSE139476 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4142nnn/GSM4142058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7064316 Sample Accession: GSM4142058 ID: 304142058 8999. Tumor derived from resistant CT26 clone-B04_A (ATAC-seq) Organism: Mus musculus Source name: CT26 tumor Platform: GPL13112 Series: GSE139473 GSE139476 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4142nnn/GSM4142057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7064315 Sample Accession: GSM4142057 ID: 304142057 9000. Tumor derived from parental line CT26_B (ATAC-seq) Organism: Mus musculus Source name: CT26 tumor Platform: GPL13112 Series: GSE139473 GSE139476 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4142nnn/GSM4142056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7064314 Sample Accession: GSM4142056 ID: 304142056 9001. Tumor derived from parental line CT26_A (ATAC-seq) Organism: Mus musculus Source name: CT26 tumor Platform: GPL13112 Series: GSE139473 GSE139476 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4142nnn/GSM4142055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7064313 Sample Accession: GSM4142055 ID: 304142055 9002. ATACseq2_Mut32 Organism: Homo sapiens Source name: S2VP10_G53D_ATAC-seq Platform: GPL20795 Series: GSE134864 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640699 Sample Accession: GSM4002916 ID: 304002916 9003. ATACseq2_Mut3 Organism: Homo sapiens Source name: S2VP10_G53D_ATAC-seq Platform: GPL20795 Series: GSE134864 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640698 Sample Accession: GSM4002915 ID: 304002915 9004. ATACseq2_WT7 Organism: Homo sapiens Source name: S2VP10_WT_ATAC-seq Platform: GPL20795 Series: GSE134864 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640697 Sample Accession: GSM4002914 ID: 304002914 9005. ATACseq1_Mut32 Organism: Homo sapiens Source name: S2VP10_G53D_ATAC-seq Platform: GPL20795 Series: GSE134864 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640696 Sample Accession: GSM4002913 ID: 304002913 9006. ATACseq1_Mut3 Organism: Homo sapiens Source name: S2VP10_G53D_ATAC-seq Platform: GPL20795 Series: GSE134864 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640695 Sample Accession: GSM4002912 ID: 304002912 9007. ATACseq1_WT16 Organism: Homo sapiens Source name: S2VP10_WT_ATAC-seq Platform: GPL20795 Series: GSE134864 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640694 Sample Accession: GSM4002911 ID: 304002911 9008. ATACseq1_WT7 Organism: Homo sapiens Source name: S2VP10_WT_ATAC-seq Platform: GPL20795 Series: GSE134864 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4002nnn/GSM4002910/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6640693 Sample Accession: GSM4002910 ID: 304002910 9009. 12iF5: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 5, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598074 Sample Accession: GSM4632747 ID: 304632747 9010. 12iF4: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 4, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598073 Sample Accession: GSM4632746 ID: 304632746 9011. 12iF3: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 3, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598072 Sample Accession: GSM4632745 ID: 304632745 9012. 12iF2: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 2, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598071 Sample Accession: GSM4632744 ID: 304632744 9013. 12iF1: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 1, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598070 Sample Accession: GSM4632743 ID: 304632743 9014. 12iH4: Head regeneration ATAC-seq, 12 hours post amputation, replicate 4, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598069 Sample Accession: GSM4632742 ID: 304632742 9015. 12iH3: Head regeneration ATAC-seq, 12 hours post amputation, replicate 3, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598068 Sample Accession: GSM4632741 ID: 304632741 9016. 12iH2: Head regeneration ATAC-seq, 12 hours post amputation, replicate 2, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598067 Sample Accession: GSM4632740 ID: 304632740 9017. 12iH1: Head regeneration ATAC-seq, 12 hours post amputation, replicate 1, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598066 Sample Accession: GSM4632739 ID: 304632739 9018. 8iF4: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 4, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598065 Sample Accession: GSM4632738 ID: 304632738 9019. 8iF3: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 3, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598064 Sample Accession: GSM4632737 ID: 304632737 9020. 8iF2: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 2, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598063 Sample Accession: GSM4632736 ID: 304632736 9021. 8iF1: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 1, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598062 Sample Accession: GSM4632735 ID: 304632735 9022. 8iH5: Head regeneration ATAC-seq, 8 hours post amputation, replicate 5, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598061 Sample Accession: GSM4632734 ID: 304632734 9023. 8iH4: Head regeneration ATAC-seq, 8 hours post amputation, replicate 4, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598060 Sample Accession: GSM4632733 ID: 304632733 9024. 8iH3: Head regeneration ATAC-seq, 8 hours post amputation, replicate 3, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598059 Sample Accession: GSM4632732 ID: 304632732 9025. 8iH2: Head regeneration ATAC-seq, 8 hours post amputation, replicate 2, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598058 Sample Accession: GSM4632731 ID: 304632731 9026. 8iH1: Head regeneration ATAC-seq, 8 hours post amputation, replicate 1, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598057 Sample Accession: GSM4632730 ID: 304632730 9027. 3iF5: Foot regeneration ATAC-seq, 3 hours post amputation, replicate 5, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598056 Sample Accession: GSM4632729 ID: 304632729 9028. 3iF4: Foot regeneration ATAC-seq, 3 hours post amputation, replicate 4, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598055 Sample Accession: GSM4632728 ID: 304632728 9029. 3iF3: Foot regeneration ATAC-seq, 3 hours post amputation, replicate 3, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598054 Sample Accession: GSM4632727 ID: 304632727 9030. 3iF2: Foot regeneration ATAC-seq, 3 hours post amputation, replicate 2, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598053 Sample Accession: GSM4632726 ID: 304632726 9031. 3iF1: Foot regeneration ATAC-seq, 3 hours post amputation, replicate 1, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598052 Sample Accession: GSM4632725 ID: 304632725 9032. 3iH4: Head regeneration ATAC-seq, 3 hours post amputation, replicate 4, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598051 Sample Accession: GSM4632724 ID: 304632724 9033. 3iH3: Head regeneration ATAC-seq, 3 hours post amputation, replicate 3, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598050 Sample Accession: GSM4632723 ID: 304632723 9034. 3iH2: Head regeneration ATAC-seq, 3 hours post amputation, replicate 2, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598049 Sample Accession: GSM4632722 ID: 304632722 9035. 3iH1: Head regeneration ATAC-seq, 3 hours post amputation, replicate 1, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598048 Sample Accession: GSM4632721 ID: 304632721 9036. 0iF4: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 4, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598047 Sample Accession: GSM4632720 ID: 304632720 9037. 0iF3: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 3, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598046 Sample Accession: GSM4632719 ID: 304632719 9038. 0iF2: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 2, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598045 Sample Accession: GSM4632718 ID: 304632718 9039. 0iF1: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 1, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598044 Sample Accession: GSM4632717 ID: 304632717 9040. 0iH4: Head regeneration ATAC-seq, 0 hours post amputation, replicate 4, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598043 Sample Accession: GSM4632716 ID: 304632716 9041. 0iH3: Head regeneration ATAC-seq, 0 hours post amputation, replicate 3, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598042 Sample Accession: GSM4632715 ID: 304632715 9042. 0iH2: Head regeneration ATAC-seq, 0 hours post amputation, replicate 2, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598041 Sample Accession: GSM4632714 ID: 304632714 9043. 0iH1: Head regeneration ATAC-seq, 0 hours post amputation, replicate 1, iCRT14 treated Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598040 Sample Accession: GSM4632713 ID: 304632713 9044. 12F5: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 5 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598039 Sample Accession: GSM4632712 ID: 304632712 9045. 12F4: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 4 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598038 Sample Accession: GSM4632711 ID: 304632711 9046. 12F3: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 3 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598037 Sample Accession: GSM4632710 ID: 304632710 9047. 12F2: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 2 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598036 Sample Accession: GSM4632709 ID: 304632709 9048. 12F1: Foot regeneration ATAC-seq, 12 hours post amputation, replicate 1 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598035 Sample Accession: GSM4632708 ID: 304632708 9049. 12H5: Head regeneration ATAC-seq, 12 hours post amputation, replicate 5 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598034 Sample Accession: GSM4632707 ID: 304632707 9050. 12H4: Head regeneration ATAC-seq, 12 hours post amputation, replicate 4 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598033 Sample Accession: GSM4632706 ID: 304632706 9051. 12H3: Head regeneration ATAC-seq, 12 hours post amputation, replicate 3 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598032 Sample Accession: GSM4632705 ID: 304632705 9052. 12H2: Head regeneration ATAC-seq, 12 hours post amputation, replicate 2 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632704/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598031 Sample Accession: GSM4632704 ID: 304632704 9053. 12H1: Head regeneration ATAC-seq, 12 hours post amputation, replicate 1 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598030 Sample Accession: GSM4632703 ID: 304632703 9054. 8F5: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 5 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598029 Sample Accession: GSM4632702 ID: 304632702 9055. 8F4: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 4 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598028 Sample Accession: GSM4632701 ID: 304632701 9056. 8F3: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 3 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598027 Sample Accession: GSM4632700 ID: 304632700 9057. 8F2: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 2 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632699/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598026 Sample Accession: GSM4632699 ID: 304632699 9058. 8F1: Foot regeneration ATAC-seq, 8 hours post amputation, replicate 1 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598025 Sample Accession: GSM4632698 ID: 304632698 9059. 8H5: Head regeneration ATAC-seq, 8 hours post amputation, replicate 5 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598024 Sample Accession: GSM4632697 ID: 304632697 9060. 8H4: Head regeneration ATAC-seq, 8 hours post amputation, replicate 4 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598023 Sample Accession: GSM4632696 ID: 304632696 9061. 8H3: Head regeneration ATAC-seq, 8 hours post amputation, replicate 3 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598022 Sample Accession: GSM4632695 ID: 304632695 9062. 8H2: Head regeneration ATAC-seq, 8 hours post amputation, replicate 2 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598021 Sample Accession: GSM4632694 ID: 304632694 9063. 8H1: Head regeneration ATAC-seq, 8 hours post amputation, replicate 1 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598020 Sample Accession: GSM4632693 ID: 304632693 9064. 3F3: Foot regeneration ATAC-seq, 3 hours post amputation, replicate 3 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598019 Sample Accession: GSM4632692 ID: 304632692 9065. 3F2: Foot regeneration ATAC-seq, 3 hours post amputation, replicate 2 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598018 Sample Accession: GSM4632691 ID: 304632691 9066. 3F1: Foot regeneration ATAC-seq, 3 hours post amputation, replicate 1 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598017 Sample Accession: GSM4632690 ID: 304632690 9067. 3H3: Head regeneration ATAC-seq, 3 hours post amputation, replicate 3 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598016 Sample Accession: GSM4632689 ID: 304632689 9068. 3H2: Head regeneration ATAC-seq, 3 hours post amputation, replicate 2 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598015 Sample Accession: GSM4632688 ID: 304632688 9069. 3H1: Head regeneration ATAC-seq, 3 hours post amputation, replicate 1 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598014 Sample Accession: GSM4632687 ID: 304632687 9070. 0F5: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 5 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598013 Sample Accession: GSM4632686 ID: 304632686 9071. 0F4: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 4 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598012 Sample Accession: GSM4632685 ID: 304632685 9072. 0F3: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 3 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598011 Sample Accession: GSM4632684 ID: 304632684 9073. 0F2: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 2 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598010 Sample Accession: GSM4632683 ID: 304632683 9074. 0F1: Foot regeneration ATAC-seq, 0 hours post amputation, replicate 1 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598009 Sample Accession: GSM4632682 ID: 304632682 9075. 0H5: Head regeneration ATAC-seq, 0 hours post amputation, replicate 5 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598008 Sample Accession: GSM4632681 ID: 304632681 9076. 0H4: Head regeneration ATAC-seq, 0 hours post amputation, replicate 4 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598007 Sample Accession: GSM4632680 ID: 304632680 9077. 0H3: Head regeneration ATAC-seq, 0 hours post amputation, replicate 3 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598006 Sample Accession: GSM4632679 ID: 304632679 9078. 0H2: Head regeneration ATAC-seq, 0 hours post amputation, replicate 2 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598005 Sample Accession: GSM4632678 ID: 304632678 9079. 0H1: Head regeneration ATAC-seq, 0 hours post amputation, replicate 1 Organism: Hydra vulgaris Source name: Mid-Body Column Tissue Platform: GPL25712 Series: GSE152994 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4632nnn/GSM4632677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8598004 Sample Accession: GSM4632677 ID: 304632677 9080. sgTraf3_2_IFNg_r2 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245787 Sample Accession: GSM4513688 ID: 304513688 9081. sgTraf3_2_IFNg_r1 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245786 Sample Accession: GSM4513687 ID: 304513687 9082. sgTraf3_1_IFNg_r2 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245785 Sample Accession: GSM4513686 ID: 304513686 9083. sgTraf3_1_IFNg_r1 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245784 Sample Accession: GSM4513685 ID: 304513685 9084. sgCtrl_IFNg_r2 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245783 Sample Accession: GSM4513684 ID: 304513684 9085. sgCtrl_IFNg_r1 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245782 Sample Accession: GSM4513683 ID: 304513683 9086. sgTraf3_2_veh_r2 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245781 Sample Accession: GSM4513682 ID: 304513682 9087. sgTraf3_2_veh_r1 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245780 Sample Accession: GSM4513681 ID: 304513681 9088. sgTraf3_1_veh_r2 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245779 Sample Accession: GSM4513680 ID: 304513680 9089. sgTraf3_1_veh_r1 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245778 Sample Accession: GSM4513679 ID: 304513679 9090. sgCtrl_veh_r2 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245777 Sample Accession: GSM4513678 ID: 304513678 9091. sgCtrl_veh_r1 Organism: Mus musculus Source name: B16F10 Platform: GPL17021 Series: GSE149821 GSE149826 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4513nnn/GSM4513677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8245776 Sample Accession: GSM4513677 ID: 304513677 9092. 41508 ATAC-Seq Pro-B Rag2(-/-) Organism: Mus musculus Source name: Pro-B Platform: GPL17021 Series: GSE140975 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4350nnn/GSM4350152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7809287 Sample Accession: GSM4350152 ID: 304350152 9093. 41499 ATAC-Seq Pax5-deficient progenitor Pax5(fl/fl) Rag2(-/-) Vav-Cre Organism: Mus musculus Source name: Pax5-deficient progenitor Platform: GPL17021 Series: GSE140975 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4350nnn/GSM4350151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7809286 Sample Accession: GSM4350151 ID: 304350151 9094. 39312 ATAC-Seq BLP (Pax5+) WT Organism: Mus musculus Source name: BLP (Pax5+) Platform: GPL17021 Series: GSE140975 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4350nnn/GSM4350150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7809285 Sample Accession: GSM4350150 ID: 304350150 9095. 39311 ATAC-Seq BLP (Pax5-) WT Organism: Mus musculus Source name: BLP (Pax5-) Platform: GPL17021 Series: GSE140975 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4350nnn/GSM4350149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7809284 Sample Accession: GSM4350149 ID: 304350149 9096. 39310 ATAC-Seq ALP WT Organism: Mus musculus Source name: ALP Platform: GPL17021 Series: GSE140975 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4350nnn/GSM4350148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7809283 Sample Accession: GSM4350148 ID: 304350148 9097. 39309 ATAC-Seq LSK WT Organism: Mus musculus Source name: LSK Platform: GPL17021 Series: GSE140975 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4350nnn/GSM4350147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7809282 Sample Accession: GSM4350147 ID: 304350147 9098. 26277 ATAC-Seq Mature B Pax5(fl/+) CD23-Cre Organism: Mus musculus Source name: Mature B Platform: GPL17021 Series: GSE140975 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4350nnn/GSM4350146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7809281 Sample Accession: GSM4350146 ID: 304350146 9099. ATAC_GSdelta44_R2 Organism: Homo sapiens Source name: GSΔ44 donor myoblasts Platform: GPL11154 Series: GSE139571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7070029 Sample Accession: GSM4143876 ID: 304143876 9100. ATAC_GSdelta44_R1 Organism: Homo sapiens Source name: GSΔ44 donor myoblasts Platform: GPL11154 Series: GSE139571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7070028 Sample Accession: GSM4143875 ID: 304143875 9101. ATAC_WT_R2 Organism: Homo sapiens Source name: healthy donor myoblasts Platform: GPL11154 Series: GSE139571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7070027 Sample Accession: GSM4143874 ID: 304143874 9102. ATAC_WT_R1 Organism: Homo sapiens Source name: healthy donor myoblasts Platform: GPL11154 Series: GSE139571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7070026 Sample Accession: GSM4143873 ID: 304143873 9103. ATAC-Seq AHR KD Organism: Homo sapiens Source name: HCASMC_ATAC-Seq AHR KD Platform: GPL20301 Series: GSE150768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358268 Sample Accession: GSM4558339 ID: 304558339 9104. ATAC-Seq Control (knockdown) Organism: Homo sapiens Source name: HCASMC_ATAC-Seq Control (knockdown) Platform: GPL20301 Series: GSE150768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358267 Sample Accession: GSM4558338 ID: 304558338 9105. ATAC-Seq AHR OE Organism: Homo sapiens Source name: HCASMC_ATAC-Seq AHR OE Platform: GPL20301 Series: GSE150768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358266 Sample Accession: GSM4558337 ID: 304558337 9106. ATAC-Seq Control (AHR OE) Organism: Homo sapiens Source name: HCASMC_ATAC-Seq Control (AHR OE) Platform: GPL20301 Series: GSE150768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358265 Sample Accession: GSM4558336 ID: 304558336 9107. Liver_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866228 Sample Accession: GSM4395721 ID: 304395721 9108. Liver_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866227 Sample Accession: GSM4395720 ID: 304395720 9109. Liver_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866226 Sample Accession: GSM4395719 ID: 304395719 9110. Liver_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866225 Sample Accession: GSM4395718 ID: 304395718 9111. LargeIntestine_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866224 Sample Accession: GSM4395717 ID: 304395717 9112. LargeIntestine_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866223 Sample Accession: GSM4395716 ID: 304395716 9113. LargeIntestine_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866222 Sample Accession: GSM4395715 ID: 304395715 9114. LargeIntestine_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866221 Sample Accession: GSM4395714 ID: 304395714 9115. LargeIntestine_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866220 Sample Accession: GSM4395713 ID: 304395713 9116. LargeIntestine_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866219 Sample Accession: GSM4395712 ID: 304395712 9117. Kidney_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866218 Sample Accession: GSM4395711 ID: 304395711 9118. Kidney_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866217 Sample Accession: GSM4395710 ID: 304395710 9119. Kidney_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866216 Sample Accession: GSM4395709 ID: 304395709 9120. Kidney_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866215 Sample Accession: GSM4395708 ID: 304395708 9121. Kidney_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866214 Sample Accession: GSM4395707 ID: 304395707 9122. Kidney_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866213 Sample Accession: GSM4395706 ID: 304395706 9123. Heart_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866212 Sample Accession: GSM4395705 ID: 304395705 9124. Heart_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866211 Sample Accession: GSM4395704 ID: 304395704 9125. Heart_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866210 Sample Accession: GSM4395703 ID: 304395703 9126. Heart_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866209 Sample Accession: GSM4395702 ID: 304395702 9127. Heart_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866208 Sample Accession: GSM4395701 ID: 304395701 9128. Heart_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866207 Sample Accession: GSM4395700 ID: 304395700 9129. Caecum_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866206 Sample Accession: GSM4395699 ID: 304395699 9130. Caecum_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866205 Sample Accession: GSM4395698 ID: 304395698 9131. Caecum_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866204 Sample Accession: GSM4395697 ID: 304395697 9132. Brain_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866203 Sample Accession: GSM4395696 ID: 304395696 9133. Brain_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866202 Sample Accession: GSM4395695 ID: 304395695 9134. Brain_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866201 Sample Accession: GSM4395694 ID: 304395694 9135. Brain_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866200 Sample Accession: GSM4395693 ID: 304395693 9136. Brain_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866199 Sample Accession: GSM4395692 ID: 304395692 9137. Brain_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866198 Sample Accession: GSM4395691 ID: 304395691 9138. Caecum_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866267 Sample Accession: GSM4395760 ID: 304395760 9139. Spleen_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866266 Sample Accession: GSM4395759 ID: 304395759 9140. Caecum_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866265 Sample Accession: GSM4395758 ID: 304395758 9141. Caecum_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866264 Sample Accession: GSM4395757 ID: 304395757 9142. Spleen_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866263 Sample Accession: GSM4395756 ID: 304395756 9143. Thymus_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866262 Sample Accession: GSM4395755 ID: 304395755 9144. Thymus_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866261 Sample Accession: GSM4395754 ID: 304395754 9145. Lymphnode_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866260 Sample Accession: GSM4395753 ID: 304395753 9146. Spleen_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866259 Sample Accession: GSM4395752 ID: 304395752 9147. Lymphnode_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866258 Sample Accession: GSM4395751 ID: 304395751 9148. Thymus_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866257 Sample Accession: GSM4395750 ID: 304395750 9149. Spleen_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866256 Sample Accession: GSM4395749 ID: 304395749 9150. Spleen_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866255 Sample Accession: GSM4395748 ID: 304395748 9151. Thymus_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866254 Sample Accession: GSM4395747 ID: 304395747 9152. Spleen_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866253 Sample Accession: GSM4395746 ID: 304395746 9153. Thymus_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866252 Sample Accession: GSM4395745 ID: 304395745 9154. SmallIntestine_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866251 Sample Accession: GSM4395744 ID: 304395744 9155. SmallIntestine_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866250 Sample Accession: GSM4395743 ID: 304395743 9156. SmallIntestine_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866249 Sample Accession: GSM4395742 ID: 304395742 9157. SmallIntestine_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866248 Sample Accession: GSM4395741 ID: 304395741 9158. SmallIntestine_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866247 Sample Accession: GSM4395740 ID: 304395740 9159. SmallIntestine_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866246 Sample Accession: GSM4395739 ID: 304395739 9160. Skin_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866245 Sample Accession: GSM4395738 ID: 304395738 9161. Skin_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866244 Sample Accession: GSM4395737 ID: 304395737 9162. Skin_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866243 Sample Accession: GSM4395736 ID: 304395736 9163. Skin_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866242 Sample Accession: GSM4395735 ID: 304395735 9164. Skin_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866241 Sample Accession: GSM4395734 ID: 304395734 9165. Skin_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866240 Sample Accession: GSM4395733 ID: 304395733 9166. Lymphnode_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866239 Sample Accession: GSM4395732 ID: 304395732 9167. Lymphnode_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866238 Sample Accession: GSM4395731 ID: 304395731 9168. Lymphnode_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866237 Sample Accession: GSM4395730 ID: 304395730 9169. Lung_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866236 Sample Accession: GSM4395729 ID: 304395729 9170. Lung_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866235 Sample Accession: GSM4395728 ID: 304395728 9171. Lung_Endothelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866234 Sample Accession: GSM4395727 ID: 304395727 9172. Lung_Endothelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866233 Sample Accession: GSM4395726 ID: 304395726 9173. Lung_Epithelium_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866232 Sample Accession: GSM4395725 ID: 304395725 9174. Lung_Epithelium_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866231 Sample Accession: GSM4395724 ID: 304395724 9175. Liver_Fibroblasts_SteadyState_ATAC_1 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866230 Sample Accession: GSM4395723 ID: 304395723 9176. Liver_Fibroblasts_SteadyState_ATAC_2 Organism: Mus musculus Source name: Murine structural cells Platform: GPL21103 Series: GSE134648 GSE134663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7866229 Sample Accession: GSM4395722 ID: 304395722 9177. ATAC-Seq_HiraKO_2 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells Platform: GPL19057 Series: GSE125154 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254263 Sample Accession: GSM3564320 ID: 303564320 9178. ATAC-Seq_HiraKO_1 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells Platform: GPL19057 Series: GSE125154 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254262 Sample Accession: GSM3564319 ID: 303564319 9179. ATAC-Seq_WT_2 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells Platform: GPL19057 Series: GSE125154 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254261 Sample Accession: GSM3564318 ID: 303564318 9180. ATAC-Seq_WT_1 Organism: Mus musculus Source name: Hematopoietic stem and progenitor cells Platform: GPL19057 Series: GSE125154 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5254260 Sample Accession: GSM3564317 ID: 303564317 9181. RNA_Macrophages_HO1-KO3 Organism: Mus musculus Source name: Peripheral blood Platform: GPL24247 Series: GSE148583 GSE148585 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111178 Sample Accession: GSM4474541 ID: 304474541 9182. RNA_Macrophages_HO1-KO2 Organism: Mus musculus Source name: Peripheral blood Platform: GPL24247 Series: GSE148583 GSE148585 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111177 Sample Accession: GSM4474540 ID: 304474540 9183. RNA_Macrophages_HO1-KO1 Organism: Mus musculus Source name: Peripheral blood Platform: GPL24247 Series: GSE148583 GSE148585 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111176 Sample Accession: GSM4474539 ID: 304474539 9184. RNA_Macrophages_WT3 Organism: Mus musculus Source name: Peripheral blood Platform: GPL24247 Series: GSE148583 GSE148585 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111175 Sample Accession: GSM4474538 ID: 304474538 9185. RNA_Macrophages_WT2 Organism: Mus musculus Source name: Peripheral blood Platform: GPL24247 Series: GSE148583 GSE148585 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111174 Sample Accession: GSM4474537 ID: 304474537 9186. RNA_Macrophages_WT1 Organism: Mus musculus Source name: Peripheral blood Platform: GPL24247 Series: GSE148583 GSE148585 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111173 Sample Accession: GSM4474536 ID: 304474536 9187. ATAC_Macrophages_WT2 Organism: Mus musculus Source name: Peripheral Blood Platform: GPL24247 Series: GSE148582 GSE148585 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4474nnn/GSM4474535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111172 Sample Accession: GSM4474535 ID: 304474535 9188. ATAC_Macrophages_WT1 Organism: Mus musculus Source name: Peripheral Blood Platform: GPL24247 Series: GSE148582 GSE148585 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4474nnn/GSM4474534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111171 Sample Accession: GSM4474534 ID: 304474534 9189. ATAC_Macrophages_KO2-HO1 Organism: Mus musculus Source name: Peripheral Blood Platform: GPL24247 Series: GSE148582 GSE148585 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4474nnn/GSM4474533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111170 Sample Accession: GSM4474533 ID: 304474533 9190. ATAC_Macrophages_KO1-HO1 Organism: Mus musculus Source name: Peripheral Blood Platform: GPL24247 Series: GSE148582 GSE148585 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4474nnn/GSM4474532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8111169 Sample Accession: GSM4474532 ID: 304474532 9191. TS543_ICRF_2_ATAC-seq Organism: Homo sapiens Source name: TS543 glioma cells Platform: GPL9052 Series: GSE133561 GSE134455 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3948nnn/GSM3948765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459150 Sample Accession: GSM3948765 ID: 303948765 9192. TS543_DMSO_2_ATAC-seq Organism: Homo sapiens Source name: TS543 glioma cells Platform: GPL9052 Series: GSE133561 GSE134455 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3948nnn/GSM3948764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459149 Sample Accession: GSM3948764 ID: 303948764 9193. TS543_ICRF_1_ATAC-seq Organism: Homo sapiens Source name: TS543 glioma cells Platform: GPL9052 Series: GSE133561 GSE134455 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3948nnn/GSM3948763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459148 Sample Accession: GSM3948763 ID: 303948763 9194. TS543_DMSO_1_ATAC-seq Organism: Homo sapiens Source name: TS543 glioma cells Platform: GPL9052 Series: GSE133561 GSE134455 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3948nnn/GSM3948762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459147 Sample Accession: GSM3948762 ID: 303948762 9195. TS543_WT_ATAC-seq Organism: Homo sapiens Source name: TS543 glioma cells Platform: GPL9052 Series: GSE133561 GSE134455 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3948nnn/GSM3948761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459146 Sample Accession: GSM3948761 ID: 303948761 9196. ATAC-seq_retina_48hpf Organism: Danio rerio Source name: retina Platform: GPL24995 Series: GSE150839 FTP download: GEO (TAR) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4559nnn/GSM4559533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8362741 Sample Accession: GSM4559533 ID: 304559533 9197. ATAC-seq_shTopors-2 Organism: Mus musculus Source name: shTopors Platform: GPL21273 Series: GSE134619 GSE134624 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3959nnn/GSM3959422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6484415 Sample Accession: GSM3959422 ID: 303959422 9198. ATAC-seq_shTopors-1 Organism: Mus musculus Source name: shTopors Platform: GPL21273 Series: GSE134619 GSE134624 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3959nnn/GSM3959421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6484414 Sample Accession: GSM3959421 ID: 303959421 9199. ATAC-seq_shCtrl-2 Organism: Mus musculus Source name: shCtrl Platform: GPL21273 Series: GSE134619 GSE134624 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3959nnn/GSM3959420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6484413 Sample Accession: GSM3959420 ID: 303959420 9200. ATAC-seq_shCtrl-1 Organism: Mus musculus Source name: shCtrl Platform: GPL21273 Series: GSE134619 GSE134624 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3959nnn/GSM3959419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6484412 Sample Accession: GSM3959419 ID: 303959419 9201. Doc5_pos_rep3 (ATAC-seq) Organism: Mus musculus Source name: ID3pos_Docile_day5 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438454 Sample Accession: GSM4232269 ID: 304232269 9202. Doc5_pos_rep1 (ATAC-seq) Organism: Mus musculus Source name: ID3pos_Docile_day5 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438453 Sample Accession: GSM4232268 ID: 304232268 9203. Doc5_neg_rep3 (ATAC-seq) Organism: Mus musculus Source name: ID3neg_Docile_day5 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438452 Sample Accession: GSM4232267 ID: 304232267 9204. Doc5_neg_rep1 (ATAC-seq) Organism: Mus musculus Source name: ID3neg_Docile_day5 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438451 Sample Accession: GSM4232266 ID: 304232266 9205. Doc21_pos_rep3 (ATAC-seq) Organism: Mus musculus Source name: ID3pos_Docile_day21 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438450 Sample Accession: GSM4232265 ID: 304232265 9206. Doc21_pos_rep1 (ATAC-seq) Organism: Mus musculus Source name: ID3pos_Docile_day21 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438449 Sample Accession: GSM4232264 ID: 304232264 9207. Doc21_neg_rep3 (ATAC-seq) Organism: Mus musculus Source name: ID3neg_Docile_day21 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438448 Sample Accession: GSM4232263 ID: 304232263 9208. Doc21_neg_rep1 (ATAC-seq) Organism: Mus musculus Source name: ID3neg_Docile_day21 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438447 Sample Accession: GSM4232262 ID: 304232262 9209. Arm5_pos_rep3 (ATAC-seq) Organism: Mus musculus Source name: ID3pos_Armstrong_day5 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438446 Sample Accession: GSM4232261 ID: 304232261 9210. Arm5_pos_rep1 (ATAC-seq) Organism: Mus musculus Source name: ID3pos_Armstrong_day5 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438445 Sample Accession: GSM4232260 ID: 304232260 9211. Arm5_neg_rep3 (ATAC-seq) Organism: Mus musculus Source name: ID3neg_Armstrong_day5 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438444 Sample Accession: GSM4232259 ID: 304232259 9212. Arm5_neg_rep1 (ATAC-seq) Organism: Mus musculus Source name: ID3neg_Armstrong_day5 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438443 Sample Accession: GSM4232258 ID: 304232258 9213. Arm21_pos_rep3 (ATAC-seq) Organism: Mus musculus Source name: ID3pos_Armstrong_day21 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438442 Sample Accession: GSM4232257 ID: 304232257 9214. Arm21_pos_rep1 (ATAC-seq) Organism: Mus musculus Source name: ID3pos_Armstrong_day21 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438441 Sample Accession: GSM4232256 ID: 304232256 9215. Arm21_neg_rep3 (ATAC-seq) Organism: Mus musculus Source name: ID3neg_Armstrong_day21 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438440 Sample Accession: GSM4232255 ID: 304232255 9216. Arm21_neg_rep1 (ATAC-seq) Organism: Mus musculus Source name: ID3neg_Armstrong_day21 Platform: GPL19057 Series: GSE142575 GSE142687 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4232nnn/GSM4232254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7438439 Sample Accession: GSM4232254 ID: 304232254 9217. ATAC-seq_siCtcf-2 Organism: Rattus norvegicus Source name: rat Schwann cell Platform: GPL18694 Series: GSE138117 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4486nnn/GSM4486220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8142331 Sample Accession: GSM4486220 ID: 304486220 9218. ATAC-seq_control-2 Organism: Rattus norvegicus Source name: rat Schwann cell Platform: GPL18694 Series: GSE138117 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4486nnn/GSM4486219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8142330 Sample Accession: GSM4486219 ID: 304486219 9219. ATAC-seq_siCtcf-1 Organism: Rattus norvegicus Source name: rat Schwann cell Platform: GPL18694 Series: GSE138117 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4101nnn/GSM4101156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6922980 Sample Accession: GSM4101156 ID: 304101156 9220. ATAC-seq_control-1 Organism: Rattus norvegicus Source name: rat Schwann cell Platform: GPL18694 Series: GSE138117 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4101nnn/GSM4101155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6922979 Sample Accession: GSM4101155 ID: 304101155 9221. ARID1A KO_diff T4_ATAC-seq Organism: Homo sapiens Source name: hESCs H9 cells Platform: GPL24676 Series: GSE139329 GSE139343 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7051376 Sample Accession: GSM4138222 ID: 304138222 9222. WT_diff T4_ATAC-seq Organism: Homo sapiens Source name: hESCs H9 cells Platform: GPL24676 Series: GSE139329 GSE139343 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7051375 Sample Accession: GSM4138221 ID: 304138221 9223. RNA-seq TGFb-and-RA-med-dose-rep2-technicalrep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573396 Sample Accession: GSM4625652 ID: 304625652 9224. RNA-seq RA-med-dose-rep2-technicalrep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573395 Sample Accession: GSM4625651 ID: 304625651 9225. RNA-seq TGFb-and-RA-med-dose-rep2-technicalrep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573394 Sample Accession: GSM4625650 ID: 304625650 9226. RNA-seq RA-med-dose-rep2-technicalrep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573393 Sample Accession: GSM4625649 ID: 304625649 9227. RNA-seq EtOH-nlDensity-dose-rep2-technicalrep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573392 Sample Accession: GSM4625648 ID: 304625648 9228. RNA-seq RA-low-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573391 Sample Accession: GSM4625647 ID: 304625647 9229. RNA-seq TGFb-and-RA-high-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573390 Sample Accession: GSM4625646 ID: 304625646 9230. RNA-seq EtOH-highDensity-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573389 Sample Accession: GSM4625645 ID: 304625645 9231. RNA-seq TGFb-low-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573388 Sample Accession: GSM4625644 ID: 304625644 9232. RNA-seq RA-high-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573387 Sample Accession: GSM4625643 ID: 304625643 9233. RNA-seq TGFb-high-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573386 Sample Accession: GSM4625642 ID: 304625642 9234. RNA-seq TGFb-med-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573428 Sample Accession: GSM4625641 ID: 304625641 9235. RNA-seq TGFb-and-RA-low-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573427 Sample Accession: GSM4625640 ID: 304625640 9236. RNA-seq TGFb-and-RA-med-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573426 Sample Accession: GSM4625639 ID: 304625639 9237. RNA-seq EtOH-nlDensity-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573425 Sample Accession: GSM4625638 ID: 304625638 9238. RNA-seq RA-med-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573424 Sample Accession: GSM4625637 ID: 304625637 9239. RNA-seq EtOH-halfDensity-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573423 Sample Accession: GSM4625636 ID: 304625636 9240. RNA-seq RA-low-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573422 Sample Accession: GSM4625635 ID: 304625635 9241. RNA-seq RA-high-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573421 Sample Accession: GSM4625634 ID: 304625634 9242. RNA-seq TGFb-high-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573420 Sample Accession: GSM4625633 ID: 304625633 9243. RNA-seq TGFb-and-RA-high-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573419 Sample Accession: GSM4625632 ID: 304625632 9244. RNA-seq EtOH-halfDensity-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573418 Sample Accession: GSM4625631 ID: 304625631 9245. RNA-seq TGFb-low-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573417 Sample Accession: GSM4625630 ID: 304625630 9246. RNA-seq TGFb-and-RA-med-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573416 Sample Accession: GSM4625629 ID: 304625629 9247. RNA-seq RA-med-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573415 Sample Accession: GSM4625628 ID: 304625628 9248. RNA-seq TGFb-med-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573414 Sample Accession: GSM4625627 ID: 304625627 9249. RNA-seq EtOH-nlDensity-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573413 Sample Accession: GSM4625626 ID: 304625626 9250. RNA-seq EtOH-highDensity-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573385 Sample Accession: GSM4625625 ID: 304625625 9251. RNA-seq TGFb-and-RA-low-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573384 Sample Accession: GSM4625624 ID: 304625624 9252. RNA-seq RA-med-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573383 Sample Accession: GSM4625623 ID: 304625623 9253. RNA-seq TGFb-and-RA-high-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573382 Sample Accession: GSM4625622 ID: 304625622 9254. RNA-seq TGFb-high-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573381 Sample Accession: GSM4625621 ID: 304625621 9255. RNA-seq TGFb-and-RA-med-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573380 Sample Accession: GSM4625620 ID: 304625620 9256. RNA-seq TGFb-and-RA-low-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573379 Sample Accession: GSM4625619 ID: 304625619 9257. RNA-seq EtOH-halfDensity-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573378 Sample Accession: GSM4625618 ID: 304625618 9258. RNA-seq RA-high-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573377 Sample Accession: GSM4625617 ID: 304625617 9259. RNA-seq EtOH-nlDensity-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573376 Sample Accession: GSM4625616 ID: 304625616 9260. RNA-seq EtOH-highDensity-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573375 Sample Accession: GSM4625615 ID: 304625615 9261. RNA-seq RA-low-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573374 Sample Accession: GSM4625614 ID: 304625614 9262. RNA-seq TGFb-med-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573373 Sample Accession: GSM4625613 ID: 304625613 9263. RNA-seq TGFb-low-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573372 Sample Accession: GSM4625612 ID: 304625612 9264. ATAC-seq RA-low-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573371 Sample Accession: GSM4625611 ID: 304625611 9265. ATAC-seq TGFb-and-RA-high-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573370 Sample Accession: GSM4625610 ID: 304625610 9266. ATAC-seq EtOH-highDensity-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573412 Sample Accession: GSM4625609 ID: 304625609 9267. ATAC-seq TGFb-low-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573411 Sample Accession: GSM4625608 ID: 304625608 9268. ATAC-seq RA-high-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573410 Sample Accession: GSM4625607 ID: 304625607 9269. ATAC-seq TGFb-high-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573409 Sample Accession: GSM4625606 ID: 304625606 9270. ATAC-seq TGFb-med-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573408 Sample Accession: GSM4625605 ID: 304625605 9271. ATAC-seq TGFb-and-RA-low-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573407 Sample Accession: GSM4625604 ID: 304625604 9272. ATAC-seq TGFb-and-RA-med-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573406 Sample Accession: GSM4625603 ID: 304625603 9273. ATAC-seq EtOH-nlDensity-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573405 Sample Accession: GSM4625602 ID: 304625602 9274. ATAC-seq RA-med-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573404 Sample Accession: GSM4625601 ID: 304625601 9275. ATAC-seq EtOH-halfDensity-dose-rep3 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573403 Sample Accession: GSM4625600 ID: 304625600 9276. ATAC-seq RA-low-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573402 Sample Accession: GSM4625599 ID: 304625599 9277. ATAC-seq RA-high-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573401 Sample Accession: GSM4625598 ID: 304625598 9278. ATAC-seq TGFb-high-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573400 Sample Accession: GSM4625597 ID: 304625597 9279. ATAC-seq TGFb-and-RA-high-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573399 Sample Accession: GSM4625596 ID: 304625596 9280. ATAC-seq EtOH-halfDensity-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573398 Sample Accession: GSM4625595 ID: 304625595 9281. ATAC-seq TGFb-low-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573397 Sample Accession: GSM4625594 ID: 304625594 9282. ATAC-seq TGFb-and-RA-med-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573369 Sample Accession: GSM4625593 ID: 304625593 9283. ATAC-seq RA-med-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573368 Sample Accession: GSM4625592 ID: 304625592 9284. ATAC-seq TGFb-med-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573367 Sample Accession: GSM4625591 ID: 304625591 9285. ATAC-seq EtOH-nlDensity-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573366 Sample Accession: GSM4625590 ID: 304625590 9286. ATAC-seq EtOH-highDensity-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573365 Sample Accession: GSM4625589 ID: 304625589 9287. ATAC-seq TGFb-and-RA-low-dose-rep2 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573364 Sample Accession: GSM4625588 ID: 304625588 9288. ATAC-seq RA-med-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573363 Sample Accession: GSM4625587 ID: 304625587 9289. ATAC-seq TGFb-and-RA-high-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573362 Sample Accession: GSM4625586 ID: 304625586 9290. ATAC-seq TGFb-high-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573361 Sample Accession: GSM4625585 ID: 304625585 9291. ATAC-seq TGFb-and-RA-med-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573360 Sample Accession: GSM4625584 ID: 304625584 9292. ATAC-seq TGFb-and-RA-low-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573359 Sample Accession: GSM4625583 ID: 304625583 9293. ATAC-seq EtOH-halfDensity-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573358 Sample Accession: GSM4625582 ID: 304625582 9294. ATAC-seq RA-high-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573357 Sample Accession: GSM4625581 ID: 304625581 9295. ATAC-seq EtOH-nlDensity-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573356 Sample Accession: GSM4625580 ID: 304625580 9296. ATAC-seq EtOH-highDensity-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573355 Sample Accession: GSM4625579 ID: 304625579 9297. ATAC-seq RA-low-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573354 Sample Accession: GSM4625578 ID: 304625578 9298. ATAC-seq TGFb-med-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573353 Sample Accession: GSM4625577 ID: 304625577 9299. ATAC-seq TGFb-low-dose-rep1 Organism: Homo sapiens Source name: MCF-7 cells Platform: GPL18573 Series: GSE152749 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4625nnn/GSM4625576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8573352 Sample Accession: GSM4625576 ID: 304625576 9300. CBE_2_duplicate ATAC-Seq Organism: Mus musculus Source name: Pro-B cell line Platform: GPL17021 Series: GSE133185 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6352584 Sample Accession: GSM3901669 ID: 303901669 9301. CBE_2_ATAC-Seq Organism: Mus musculus Source name: Pro-B cell line Platform: GPL17021 Series: GSE133185 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6352583 Sample Accession: GSM3901668 ID: 303901668 9302. CBE_1_duplicate ATAC-Seq Organism: Mus musculus Source name: Pro-B cell line Platform: GPL17021 Series: GSE133185 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6352582 Sample Accession: GSM3901667 ID: 303901667 9303. CBE_1_ATAC-Seq Organism: Mus musculus Source name: Pro-B cell line Platform: GPL17021 Series: GSE133185 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6352581 Sample Accession: GSM3901666 ID: 303901666 9304. WT duplicate ATAC-Seq Organism: Mus musculus Source name: Pro-B cell line Platform: GPL17021 Series: GSE133185 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6352580 Sample Accession: GSM3901665 ID: 303901665 9305. WT ATAC-Seq Organism: Mus musculus Source name: Pro-B cell line Platform: GPL17021 Series: GSE133185 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6352579 Sample Accession: GSM3901664 ID: 303901664 9306. ATAC-seq.rESC.rep2 Organism: Mus musculus Source name: mouse stem cells during primed convert to naïve state Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062202 Sample Accession: GSM3488896 ID: 303488896 9307. ATAC-seq.rESC.rep1 Organism: Mus musculus Source name: mouse stem cells during primed convert to naïve state Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062201 Sample Accession: GSM3488895 ID: 303488895 9308. ATAC-seq.mESC.rep2 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062200 Sample Accession: GSM3488894 ID: 303488894 9309. ATAC-seq.mESC.rep1 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062199 Sample Accession: GSM3488893 ID: 303488893 9310. ATAC-seq.d8 Organism: Mus musculus Source name: mouse stem cells during primed convert to naïve state Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062198 Sample Accession: GSM3488892 ID: 303488892 9311. ATAC-seq.d5 Organism: Mus musculus Source name: mouse stem cells during primed convert to naïve state Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062197 Sample Accession: GSM3488891 ID: 303488891 9312. ATAC-seq.d3 Organism: Mus musculus Source name: mouse stem cells during primed convert to naïve state Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062196 Sample Accession: GSM3488890 ID: 303488890 9313. ATAC-seq.d3-BMP4 Organism: Mus musculus Source name: mouse stem cells during primed convert to naïve state Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062195 Sample Accession: GSM3488889 ID: 303488889 9314. ATAC-seq.EpiSC Organism: Mus musculus Source name: mouse stem cells during primed convert to naïve state Platform: GPL19057 Series: GSE122935 GSE122937 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3488nnn/GSM3488888/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5062194 Sample Accession: GSM3488888 ID: 303488888 9315. stage 40 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358039 Sample Accession: GSM4558130 ID: 304558130 9316. stage 38 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358038 Sample Accession: GSM4558129 ID: 304558129 9317. stage 36 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358037 Sample Accession: GSM4558128 ID: 304558128 9318. stage 32 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558127/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358036 Sample Accession: GSM4558127 ID: 304558127 9319. stage 32 rep 1 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358035 Sample Accession: GSM4558126 ID: 304558126 9320. stage 29 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358034 Sample Accession: GSM4558125 ID: 304558125 9321. stage 29 rep 1 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358033 Sample Accession: GSM4558124 ID: 304558124 9322. stage 25 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358032 Sample Accession: GSM4558123 ID: 304558123 9323. stage 25 rep 1 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358031 Sample Accession: GSM4558122 ID: 304558122 9324. stage 19 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358030 Sample Accession: GSM4558121 ID: 304558121 9325. stage 15 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358029 Sample Accession: GSM4558120 ID: 304558120 9326. stage 11 rep 2 Organism: Oryzias latipes Source name:  whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4558nnn/GSM4558119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8358028 Sample Accession: GSM4558119 ID: 304558119 9327. stage 40 rep 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4039nnn/GSM4039589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6743189 Sample Accession: GSM4039589 ID: 304039589 9328. stage 38 rep 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4039nnn/GSM4039588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6743188 Sample Accession: GSM4039588 ID: 304039588 9329. stage 36 rep 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4039nnn/GSM4039587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6743187 Sample Accession: GSM4039587 ID: 304039587 9330. stage 19 rep 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4039nnn/GSM4039583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6743183 Sample Accession: GSM4039583 ID: 304039583 9331. stage 15 rep 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4039nnn/GSM4039582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6743182 Sample Accession: GSM4039582 ID: 304039582 9332. stage 11 rep 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL25587 Series: GSE136027 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4039nnn/GSM4039581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6743181 Sample Accession: GSM4039581 ID: 304039581 9333. AICAR_rep2 Organism: Homo sapiens Source name: iPSC-derived Cardiomyoytes Platform: GPL21697 Series: GSE152265 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4610nnn/GSM4610441/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8530421 Sample Accession: GSM4610441 ID: 304610441 9334. AICAR_rep1 Organism: Homo sapiens Source name: iPSC-derived Cardiomyoytes Platform: GPL21697 Series: GSE152265 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4610nnn/GSM4610440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8530420 Sample Accession: GSM4610440 ID: 304610440 9335. NAM_rep2 Organism: Homo sapiens Source name: iPSC-derived Cardiomyoytes Platform: GPL21697 Series: GSE152265 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4610nnn/GSM4610439/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8530419 Sample Accession: GSM4610439 ID: 304610439 9336. NAM_rep1 Organism: Homo sapiens Source name: iPSC-derived Cardiomyoytes Platform: GPL21697 Series: GSE152265 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4610nnn/GSM4610438/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8530418 Sample Accession: GSM4610438 ID: 304610438 9337. myl7:nucDsRed+ CMs ATAC-Seq rep2 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809544 Sample Accession: GSM3756562 ID: 303756562 9338. myl7:nucDsRed+ CMs ATAC-Seq rep1 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809543 Sample Accession: GSM3756561 ID: 303756561 9339. junbb OE CMs ATAC-Seq rep2 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809542 Sample Accession: GSM3756560 ID: 303756560 9340. junbb OE CMs ATAC-Seq rep1 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809541 Sample Accession: GSM3756559 ID: 303756559 9341. junba OE CMs ATAC-Seq rep2 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809540 Sample Accession: GSM3756558 ID: 303756558 9342. junba OE CMs ATAC-Seq rep1 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809539 Sample Accession: GSM3756557 ID: 303756557 9343. gata4:EGFP+ CMs ATAC-Seq rep2 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809538 Sample Accession: GSM3756556 ID: 303756556 9344. gata4:EGFP+ CMs ATAC-Seq rep1 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809537 Sample Accession: GSM3756555 ID: 303756555 9345. A-Fos (-) CMs ATAC-Seq rep3 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809536 Sample Accession: GSM3756554 ID: 303756554 9346. A-Fos (-) CMs ATAC-Seq rep2 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809535 Sample Accession: GSM3756553 ID: 303756553 9347. A-Fos (-) CMs ATAC-Seq rep1 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809534 Sample Accession: GSM3756552 ID: 303756552 9348. A-Fos (+) CMs ATAC-Seq rep3 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809533 Sample Accession: GSM3756551 ID: 303756551 9349. A-Fos (+) CMs ATAC-Seq rep2 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809532 Sample Accession: GSM3756550 ID: 303756550 9350. A-Fos (+) CMs ATAC-Seq rep1 Organism: Danio rerio Source name: adult zebrafish cardiomyocytes Platform: GPL20828 Series: GSE130940 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5809531 Sample Accession: GSM3756549 ID: 303756549 9351. ATACseq_Sub10_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540663 Sample Accession: GSM4259671 ID: 304259671 9352. ATACseq_Sub10_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540662 Sample Accession: GSM4259670 ID: 304259670 9353. ATACseq_Sub10_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540661 Sample Accession: GSM4259669 ID: 304259669 9354. ATACseq_Sub10_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540660 Sample Accession: GSM4259668 ID: 304259668 9355. ATACseq_Sub9_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540659 Sample Accession: GSM4259667 ID: 304259667 9356. ATACseq_Sub9_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540658 Sample Accession: GSM4259666 ID: 304259666 9357. ATACseq_Sub9_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540657 Sample Accession: GSM4259665 ID: 304259665 9358. ATACseq_Sub9_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540656 Sample Accession: GSM4259664 ID: 304259664 9359. ATACseq_Sub8_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540655 Sample Accession: GSM4259663 ID: 304259663 9360. ATACseq_Sub8_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540654 Sample Accession: GSM4259662 ID: 304259662 9361. ATACseq_Sub8_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540653 Sample Accession: GSM4259661 ID: 304259661 9362. ATACseq_Sub8_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540652 Sample Accession: GSM4259660 ID: 304259660 9363. ATACseq_Sub7_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540651 Sample Accession: GSM4259659 ID: 304259659 9364. ATACseq_Sub7_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540650 Sample Accession: GSM4259658 ID: 304259658 9365. ATACseq_Sub7_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540649 Sample Accession: GSM4259657 ID: 304259657 9366. ATACseq_Sub7_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540648 Sample Accession: GSM4259656 ID: 304259656 9367. ATACseq_Sub6_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540647 Sample Accession: GSM4259655 ID: 304259655 9368. ATACseq_Sub6_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540646 Sample Accession: GSM4259654 ID: 304259654 9369. ATACseq_Sub6_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540645 Sample Accession: GSM4259653 ID: 304259653 9370. ATACseq_Sub6_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540644 Sample Accession: GSM4259652 ID: 304259652 9371. ATACseq_Sub5_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540643 Sample Accession: GSM4259651 ID: 304259651 9372. ATACseq_Sub5_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540642 Sample Accession: GSM4259650 ID: 304259650 9373. ATACseq_Sub5_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540641 Sample Accession: GSM4259649 ID: 304259649 9374. ATACseq_Sub5_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540640 Sample Accession: GSM4259648 ID: 304259648 9375. ATACseq_Sub4_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540639 Sample Accession: GSM4259647 ID: 304259647 9376. ATACseq_Sub4_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540638 Sample Accession: GSM4259646 ID: 304259646 9377. ATACseq_Sub4_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540637 Sample Accession: GSM4259645 ID: 304259645 9378. ATACseq_Sub4_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540636 Sample Accession: GSM4259644 ID: 304259644 9379. ATACseq_Sub3_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540635 Sample Accession: GSM4259643 ID: 304259643 9380. ATACseq_Sub3_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540634 Sample Accession: GSM4259642 ID: 304259642 9381. ATACseq_Sub3_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540633 Sample Accession: GSM4259641 ID: 304259641 9382. ATACseq_Sub3_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540632 Sample Accession: GSM4259640 ID: 304259640 9383. ATACseq_Sub2_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540631 Sample Accession: GSM4259639 ID: 304259639 9384. ATACseq_Sub2_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540630 Sample Accession: GSM4259638 ID: 304259638 9385. ATACseq_Sub2_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540629 Sample Accession: GSM4259637 ID: 304259637 9386. ATACseq_Sub2_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540628 Sample Accession: GSM4259636 ID: 304259636 9387. ATACseq_Sub1_GF_rep2 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540627 Sample Accession: GSM4259635 ID: 304259635 9388. ATACseq_Sub1_GF_rep1 Organism: Homo sapiens Source name: subcutaneous gluteofemoral fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540626 Sample Accession: GSM4259634 ID: 304259634 9389. ATACseq_Sub1_ABD_rep2 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540625 Sample Accession: GSM4259633 ID: 304259633 9390. ATACseq_Sub1_ABD_rep1 Organism: Homo sapiens Source name: subcutaneous abdominal fat Platform: GPL16791 Series: GSE143449 GSE143450 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4259nnn/GSM4259632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7540624 Sample Accession: GSM4259632 ID: 304259632 9391. B6.ltbi.none.naive.0.JN2.3 (ATAC-seq) Organism: Mus musculus Source name: Alveolar macrophages Platform: GPL19057 Series: GSE126355 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3597nnn/GSM3597103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5358165 Sample Accession: GSM3597103 ID: 303597103 9392. B6.ltbi.none.naive.0.JN2.2 (ATAC-seq) Organism: Mus musculus Source name: Alveolar macrophages Platform: GPL19057 Series: GSE126355 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3597nnn/GSM3597102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5358164 Sample Accession: GSM3597102 ID: 303597102 9393. B6.ltbi.none.naive.0.JN2.1 (ATAC-seq) Organism: Mus musculus Source name: Alveolar macrophages Platform: GPL19057 Series: GSE126355 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3597nnn/GSM3597101/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5358163 Sample Accession: GSM3597101 ID: 303597101 9394. B6.cntl.none.naive.0.JN2.3 (ATAC-seq) Organism: Mus musculus Source name: Alveolar macrophages Platform: GPL19057 Series: GSE126355 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3597nnn/GSM3597100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5358162 Sample Accession: GSM3597100 ID: 303597100 9395. B6.cntl.none.naive.0.JN2.2 (ATAC-seq) Organism: Mus musculus Source name: Alveolar macrophages Platform: GPL19057 Series: GSE126355 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3597nnn/GSM3597099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5358161 Sample Accession: GSM3597099 ID: 303597099 9396. B6.cntl.none.naive.0.JN2.1 (ATAC-seq) Organism: Mus musculus Source name: Alveolar macrophages Platform: GPL19057 Series: GSE126355 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3597nnn/GSM3597098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5358160 Sample Accession: GSM3597098 ID: 303597098 9397. ATAC-Seq: ARID1A-KO2 rep3 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195752 Sample Accession: GSM3537188 ID: 303537188 9398. ATAC-Seq: ARID1A-KO2 rep2 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195751 Sample Accession: GSM3537187 ID: 303537187 9399. ATAC-Seq: ARID1A-KO2 rep1 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195750 Sample Accession: GSM3537186 ID: 303537186 9400. ATAC-Seq: ARID1A-KO1 rep3 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195749 Sample Accession: GSM3537185 ID: 303537185 9401. ATAC-Seq: ARID1A-KO1 rep2 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195748 Sample Accession: GSM3537184 ID: 303537184 9402. ATAC-Seq: ARID1A-KO1 rep1 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195747 Sample Accession: GSM3537183 ID: 303537183 9403. ATAC-Seq: ARID1A-WT2 rep3 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195746 Sample Accession: GSM3537182 ID: 303537182 9404. ATAC-Seq: ARID1A-WT2 rep2 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195745 Sample Accession: GSM3537181 ID: 303537181 9405. ATAC-Seq: ARID1A-WT2 rep1 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195744 Sample Accession: GSM3537180 ID: 303537180 9406. ATAC-Seq: ARID1A-WT1 rep3 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195743 Sample Accession: GSM3537179 ID: 303537179 9407. ATAC-Seq: ARID1A-WT1 rep2 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195742 Sample Accession: GSM3537178 ID: 303537178 9408. ATAC-Seq: ARID1A-WT1 rep1 Organism: Homo sapiens Source name: endometrial epithelial cells Platform: GPL18573 Series: GSE106658 GSE106665 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5195741 Sample Accession: GSM3537177 ID: 303537177 9409. ATACseq_st5_msl3RNAi_rep2 Organism: Drosophila melanogaster Source name: blastoderm embryos nc14 Platform: GPL23323 Series: GSE130334 GSE130335 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5736455 Sample Accession: GSM3736315 ID: 303736315 9410. ATACseq_st5_msl3RNAi_rep1 Organism: Drosophila melanogaster Source name: blastoderm embryos nc14 Platform: GPL23323 Series: GSE130334 GSE130335 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5736454 Sample Accession: GSM3736314 ID: 303736314 9411. ATACseq_st5_controlRNAi_rep2 Organism: Drosophila melanogaster Source name: blastoderm embryos nc14 Platform: GPL23323 Series: GSE130334 GSE130335 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5736453 Sample Accession: GSM3736313 ID: 303736313 9412. ATACseq_st5_controlRNAi_rep1 Organism: Drosophila melanogaster Source name: blastoderm embryos nc14 Platform: GPL23323 Series: GSE130334 GSE130335 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5736452 Sample Accession: GSM3736312 ID: 303736312 9413. ATACseq_st3-4_mofRNAi_rep2 Organism: Drosophila melanogaster Source name: preblastoderm embryos nc9-13 Platform: GPL23323 Series: GSE130334 GSE130335 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5736451 Sample Accession: GSM3736311 ID: 303736311 9414. ATACseq_st3-4_mofRNAi_rep1 Organism: Drosophila melanogaster Source name: preblastoderm embryos nc9-13 Platform: GPL23323 Series: GSE130334 GSE130335 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5736450 Sample Accession: GSM3736310 ID: 303736310 9415. ATACseq_st3-4controlRNAi_rep2 Organism: Drosophila melanogaster Source name: preblastoderm embryos nc9-12 Platform: GPL23323 Series: GSE130334 GSE130335 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5736449 Sample Accession: GSM3736309 ID: 303736309 9416. ATACseq_st3-4controlRNAi_rep1 Organism: Drosophila melanogaster Source name: preblastoderm embryos nc9-12 Platform: GPL23323 Series: GSE130334 GSE130335 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5736448 Sample Accession: GSM3736308 ID: 303736308 9417. iBlast-RUNX1 KD-rep3 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541904 Sample Accession: GSM4260069 ID: 304260069 9418. iBlast-RUNX1 KD-rep2 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541903 Sample Accession: GSM4260068 ID: 304260068 9419. iBlast-RUNX1 KD-rep1 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541902 Sample Accession: GSM4260067 ID: 304260067 9420. iBlast-control-rep3 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541901 Sample Accession: GSM4260066 ID: 304260066 9421. iBlast-control-rep2 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541900 Sample Accession: GSM4260065 ID: 304260065 9422. iBlast-control-rep1 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541899 Sample Accession: GSM4260064 ID: 304260064 9423. iLSC-RUNX1 KD-rep3 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541898 Sample Accession: GSM4260063 ID: 304260063 9424. iLSC-RUNX1 KD-rep2 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541897 Sample Accession: GSM4260062 ID: 304260062 9425. iLSC-RUNX1 KD-rep1 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541896 Sample Accession: GSM4260061 ID: 304260061 9426. iLSC-control-rep3 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541895 Sample Accession: GSM4260060 ID: 304260060 9427. iLSC-control-rep2 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541894 Sample Accession: GSM4260059 ID: 304260059 9428. iLSC-control-rep1 [ATAC-seq] Organism: Homo sapiens Source name: human iPSCs Platform: GPL18573 Series: GSE143471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7541893 Sample Accession: GSM4260058 ID: 304260058 9429. donor9.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060376 Sample Accession: GSM4454128 ID: 304454128 9430. donor8.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060375 Sample Accession: GSM4454127 ID: 304454127 9431. donor6.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060374 Sample Accession: GSM4454126 ID: 304454126 9432. donor5.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060373 Sample Accession: GSM4454125 ID: 304454125 9433. donor51.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060372 Sample Accession: GSM4454124 ID: 304454124 9434. donor50.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060371 Sample Accession: GSM4454123 ID: 304454123 9435. donor4.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060370 Sample Accession: GSM4454122 ID: 304454122 9436. donor49.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060369 Sample Accession: GSM4454121 ID: 304454121 9437. donor47.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060368 Sample Accession: GSM4454120 ID: 304454120 9438. donor45.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060367 Sample Accession: GSM4454119 ID: 304454119 9439. donor44.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060366 Sample Accession: GSM4454118 ID: 304454118 9440. donor43.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060365 Sample Accession: GSM4454117 ID: 304454117 9441. donor43.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060364 Sample Accession: GSM4454116 ID: 304454116 9442. donor42.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060363 Sample Accession: GSM4454115 ID: 304454115 9443. donor42.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060362 Sample Accession: GSM4454114 ID: 304454114 9444. donor41.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060361 Sample Accession: GSM4454113 ID: 304454113 9445. donor40.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060360 Sample Accession: GSM4454112 ID: 304454112 9446. donor3.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060359 Sample Accession: GSM4454111 ID: 304454111 9447. donor39.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060358 Sample Accession: GSM4454110 ID: 304454110 9448. donor38.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060357 Sample Accession: GSM4454109 ID: 304454109 9449. donor37.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060356 Sample Accession: GSM4454108 ID: 304454108 9450. donor36.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060355 Sample Accession: GSM4454107 ID: 304454107 9451. donor35.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060354 Sample Accession: GSM4454106 ID: 304454106 9452. donor33.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060353 Sample Accession: GSM4454105 ID: 304454105 9453. donor33.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060352 Sample Accession: GSM4454104 ID: 304454104 9454. donor32.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060351 Sample Accession: GSM4454103 ID: 304454103 9455. donor31.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060350 Sample Accession: GSM4454102 ID: 304454102 9456. donor30.chip_input_NT.F Organism: Homo sapiens Source name: human aortic endothelial cell_Untreated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060349 Sample Accession: GSM4454101 ID: 304454101 9457. donor2.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060348 Sample Accession: GSM4454100 ID: 304454100 9458. donor28.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060347 Sample Accession: GSM4454099 ID: 304454099 9459. donor27.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060346 Sample Accession: GSM4454098 ID: 304454098 9460. donor27.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060345 Sample Accession: GSM4454097 ID: 304454097 9461. donor26.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060344 Sample Accession: GSM4454096 ID: 304454096 9462. donor25.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060343 Sample Accession: GSM4454095 ID: 304454095 9463. donor24.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060342 Sample Accession: GSM4454094 ID: 304454094 9464. donor23.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060341 Sample Accession: GSM4454093 ID: 304454093 9465. donor22.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060340 Sample Accession: GSM4454092 ID: 304454092 9466. donor22.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060339 Sample Accession: GSM4454091 ID: 304454091 9467. donor21.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060338 Sample Accession: GSM4454090 ID: 304454090 9468. donor1.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060337 Sample Accession: GSM4454089 ID: 304454089 9469. donor19.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060336 Sample Accession: GSM4454088 ID: 304454088 9470. donor18.chip_input_NT.F Organism: Homo sapiens Source name: human aortic endothelial cell_Untreated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060335 Sample Accession: GSM4454087 ID: 304454087 9471. donor18.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060334 Sample Accession: GSM4454086 ID: 304454086 9472. donor17.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060333 Sample Accession: GSM4454085 ID: 304454085 9473. donor16.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060332 Sample Accession: GSM4454084 ID: 304454084 9474. donor15.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060331 Sample Accession: GSM4454083 ID: 304454083 9475. donor15.chip_input_IL1b.D Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060330 Sample Accession: GSM4454082 ID: 304454082 9476. donor14.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060329 Sample Accession: GSM4454081 ID: 304454081 9477. donor13.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060328 Sample Accession: GSM4454080 ID: 304454080 9478. donor12.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060327 Sample Accession: GSM4454079 ID: 304454079 9479. donor11.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8060326 Sample Accession: GSM4454078 ID: 304454078 9480. donor10.chip_input_IL1b.F Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_input Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8062385 Sample Accession: GSM4454077 ID: 304454077 9481. donor12.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7067179 Sample Accession: GSM4142896 ID: 304142896 9482. donor12.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7067178 Sample Accession: GSM4142895 ID: 304142895 9483. donor53.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054672 Sample Accession: GSM4139632 ID: 304139632 9484. donor52.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054671 Sample Accession: GSM4139631 ID: 304139631 9485. donor51.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054670 Sample Accession: GSM4139630 ID: 304139630 9486. donor49.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054669 Sample Accession: GSM4139629 ID: 304139629 9487. donor47.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054668 Sample Accession: GSM4139628 ID: 304139628 9488. donor45.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054667 Sample Accession: GSM4139627 ID: 304139627 9489. donor44.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054666 Sample Accession: GSM4139626 ID: 304139626 9490. donor41.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054665 Sample Accession: GSM4139625 ID: 304139625 9491. donor40.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054664 Sample Accession: GSM4139624 ID: 304139624 9492. donor39.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054663 Sample Accession: GSM4139623 ID: 304139623 9493. donor38.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054662 Sample Accession: GSM4139622 ID: 304139622 9494. donor36.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054661 Sample Accession: GSM4139621 ID: 304139621 9495. donor35.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054660 Sample Accession: GSM4139620 ID: 304139620 9496. donor33.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054659 Sample Accession: GSM4139619 ID: 304139619 9497. donor31.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054658 Sample Accession: GSM4139618 ID: 304139618 9498. donor28.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054657 Sample Accession: GSM4139617 ID: 304139617 9499. donor27.p65_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054624 Sample Accession: GSM4139616 ID: 304139616 9500. donor27.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054623 Sample Accession: GSM4139615 ID: 304139615 9501. donor26.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054622 Sample Accession: GSM4139614 ID: 304139614 9502. donor25.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054621 Sample Accession: GSM4139613 ID: 304139613 9503. donor24.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054620 Sample Accession: GSM4139612 ID: 304139612 9504. donor22.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054619 Sample Accession: GSM4139611 ID: 304139611 9505. donor21.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054618 Sample Accession: GSM4139610 ID: 304139610 9506. donor17.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054617 Sample Accession: GSM4139609 ID: 304139609 9507. donor16.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054616 Sample Accession: GSM4139608 ID: 304139608 9508. donor14.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054615 Sample Accession: GSM4139607 ID: 304139607 9509. donor13.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054614 Sample Accession: GSM4139606 ID: 304139606 9510. donor11.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054613 Sample Accession: GSM4139605 ID: 304139605 9511. donor10.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054612 Sample Accession: GSM4139604 ID: 304139604 9512. donor9.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054611 Sample Accession: GSM4139603 ID: 304139603 9513. donor8.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054610 Sample Accession: GSM4139602 ID: 304139602 9514. donor7.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054609 Sample Accession: GSM4139601 ID: 304139601 9515. donor6.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055008 Sample Accession: GSM4139600 ID: 304139600 9516. donor5.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055007 Sample Accession: GSM4139599 ID: 304139599 9517. donor4.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055006 Sample Accession: GSM4139598 ID: 304139598 9518. donor3.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055005 Sample Accession: GSM4139597 ID: 304139597 9519. donor2.p65_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_p65 Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055004 Sample Accession: GSM4139596 ID: 304139596 9520. donor53.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055003 Sample Accession: GSM4139595 ID: 304139595 9521. donor51.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055002 Sample Accession: GSM4139594 ID: 304139594 9522. donor49.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055001 Sample Accession: GSM4139593 ID: 304139593 9523. donor47.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7055000 Sample Accession: GSM4139592 ID: 304139592 9524. donor46.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054999 Sample Accession: GSM4139591 ID: 304139591 9525. donor44.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054998 Sample Accession: GSM4139590 ID: 304139590 9526. donor40.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054997 Sample Accession: GSM4139589 ID: 304139589 9527. donor39.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054996 Sample Accession: GSM4139588 ID: 304139588 9528. donor38.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054995 Sample Accession: GSM4139587 ID: 304139587 9529. donor33.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054994 Sample Accession: GSM4139586 ID: 304139586 9530. donor28.erg_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054993 Sample Accession: GSM4139585 ID: 304139585 9531. donor28.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054944 Sample Accession: GSM4139584 ID: 304139584 9532. donor26.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054943 Sample Accession: GSM4139583 ID: 304139583 9533. donor24.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054942 Sample Accession: GSM4139582 ID: 304139582 9534. donor21.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054941 Sample Accession: GSM4139581 ID: 304139581 9535. donor19.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054940 Sample Accession: GSM4139580 ID: 304139580 9536. donor17.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054939 Sample Accession: GSM4139579 ID: 304139579 9537. donor16.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054938 Sample Accession: GSM4139578 ID: 304139578 9538. donor14.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054937 Sample Accession: GSM4139577 ID: 304139577 9539. donor13.erg_notx.rep3 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054936 Sample Accession: GSM4139576 ID: 304139576 9540. donor13.erg_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054935 Sample Accession: GSM4139575 ID: 304139575 9541. donor13.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054934 Sample Accession: GSM4139574 ID: 304139574 9542. donor5.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054933 Sample Accession: GSM4139573 ID: 304139573 9543. donor4.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054932 Sample Accession: GSM4139572 ID: 304139572 9544. donor1.erg_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ERG Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054931 Sample Accession: GSM4139571 ID: 304139571 9545. donor53.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054930 Sample Accession: GSM4139570 ID: 304139570 9546. donor52.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054929 Sample Accession: GSM4139569 ID: 304139569 9547. donor51.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054880 Sample Accession: GSM4139568 ID: 304139568 9548. donor49.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054879 Sample Accession: GSM4139567 ID: 304139567 9549. donor47.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054878 Sample Accession: GSM4139566 ID: 304139566 9550. donor45.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054877 Sample Accession: GSM4139565 ID: 304139565 9551. donor44.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054876 Sample Accession: GSM4139564 ID: 304139564 9552. donor43.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054875 Sample Accession: GSM4139563 ID: 304139563 9553. donor41.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054874 Sample Accession: GSM4139562 ID: 304139562 9554. donor40.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054873 Sample Accession: GSM4139561 ID: 304139561 9555. donor39.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054872 Sample Accession: GSM4139560 ID: 304139560 9556. donor38.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054871 Sample Accession: GSM4139559 ID: 304139559 9557. donor37.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054870 Sample Accession: GSM4139558 ID: 304139558 9558. donor36.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054869 Sample Accession: GSM4139557 ID: 304139557 9559. donor35.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139556/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054868 Sample Accession: GSM4139556 ID: 304139556 9560. donor33.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054867 Sample Accession: GSM4139555 ID: 304139555 9561. donor32.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054866 Sample Accession: GSM4139554 ID: 304139554 9562. donor31.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054865 Sample Accession: GSM4139553 ID: 304139553 9563. donor30.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054816 Sample Accession: GSM4139552 ID: 304139552 9564. donor29.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054815 Sample Accession: GSM4139551 ID: 304139551 9565. donor26.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054814 Sample Accession: GSM4139550 ID: 304139550 9566. donor25.h3k27ac_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054813 Sample Accession: GSM4139549 ID: 304139549 9567. donor25.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054812 Sample Accession: GSM4139548 ID: 304139548 9568. donor24.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054811 Sample Accession: GSM4139547 ID: 304139547 9569. donor23.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054810 Sample Accession: GSM4139546 ID: 304139546 9570. donor22.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054809 Sample Accession: GSM4139545 ID: 304139545 9571. donor21.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054808 Sample Accession: GSM4139544 ID: 304139544 9572. donor19.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054807 Sample Accession: GSM4139543 ID: 304139543 9573. donor18.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054806 Sample Accession: GSM4139542 ID: 304139542 9574. donor17.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054805 Sample Accession: GSM4139541 ID: 304139541 9575. donor16.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054804 Sample Accession: GSM4139540 ID: 304139540 9576. donor15.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054803 Sample Accession: GSM4139539 ID: 304139539 9577. donor14.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054802 Sample Accession: GSM4139538 ID: 304139538 9578. donor13.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054801 Sample Accession: GSM4139537 ID: 304139537 9579. donor12.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054608 Sample Accession: GSM4139536 ID: 304139536 9580. donor10.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054607 Sample Accession: GSM4139535 ID: 304139535 9581. donor9.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054606 Sample Accession: GSM4139534 ID: 304139534 9582. donor7.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054605 Sample Accession: GSM4139533 ID: 304139533 9583. donor5.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054604 Sample Accession: GSM4139532 ID: 304139532 9584. donor4.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054603 Sample Accession: GSM4139531 ID: 304139531 9585. donor3.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054602 Sample Accession: GSM4139530 ID: 304139530 9586. donor2.h3k27ac_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054601 Sample Accession: GSM4139529 ID: 304139529 9587. donor2.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054600 Sample Accession: GSM4139528 ID: 304139528 9588. donor1.h3k27ac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054599 Sample Accession: GSM4139527 ID: 304139527 9589. donor53.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054598 Sample Accession: GSM4139526 ID: 304139526 9590. donor52.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054597 Sample Accession: GSM4139525 ID: 304139525 9591. donor51.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054596 Sample Accession: GSM4139524 ID: 304139524 9592. donor49.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139523/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054595 Sample Accession: GSM4139523 ID: 304139523 9593. donor47.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054594 Sample Accession: GSM4139522 ID: 304139522 9594. donor46.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054593 Sample Accession: GSM4139521 ID: 304139521 9595. donor44.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054992 Sample Accession: GSM4139520 ID: 304139520 9596. donor43.h3k27ac_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054991 Sample Accession: GSM4139519 ID: 304139519 9597. donor43.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054990 Sample Accession: GSM4139518 ID: 304139518 9598. donor41.h3k27ac_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054989 Sample Accession: GSM4139517 ID: 304139517 9599. donor41.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139516/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054988 Sample Accession: GSM4139516 ID: 304139516 9600. donor40.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054987 Sample Accession: GSM4139515 ID: 304139515 9601. donor39.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054986 Sample Accession: GSM4139514 ID: 304139514 9602. donor38.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139513/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054985 Sample Accession: GSM4139513 ID: 304139513 9603. donor37.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054984 Sample Accession: GSM4139512 ID: 304139512 9604. donor36.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054983 Sample Accession: GSM4139511 ID: 304139511 9605. donor33.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054982 Sample Accession: GSM4139510 ID: 304139510 9606. donor32.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139509/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054981 Sample Accession: GSM4139509 ID: 304139509 9607. donor31.h3k27ac_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054980 Sample Accession: GSM4139508 ID: 304139508 9608. donor31.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054979 Sample Accession: GSM4139507 ID: 304139507 9609. donor30.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139506/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054978 Sample Accession: GSM4139506 ID: 304139506 9610. donor29.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054977 Sample Accession: GSM4139505 ID: 304139505 9611. donor28.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139504/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054928 Sample Accession: GSM4139504 ID: 304139504 9612. donor27.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054927 Sample Accession: GSM4139503 ID: 304139503 9613. donor26.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139502/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054926 Sample Accession: GSM4139502 ID: 304139502 9614. donor25.h3k27ac_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054925 Sample Accession: GSM4139501 ID: 304139501 9615. donor25.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054924 Sample Accession: GSM4139500 ID: 304139500 9616. donor24.h3k27ac_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054923 Sample Accession: GSM4139499 ID: 304139499 9617. donor24.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054922 Sample Accession: GSM4139498 ID: 304139498 9618. donor23.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054921 Sample Accession: GSM4139497 ID: 304139497 9619. donor22.h3k27ac_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054920 Sample Accession: GSM4139496 ID: 304139496 9620. donor22.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054919 Sample Accession: GSM4139495 ID: 304139495 9621. donor21.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054918 Sample Accession: GSM4139494 ID: 304139494 9622. donor19.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054917 Sample Accession: GSM4139493 ID: 304139493 9623. donor18.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139492/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054916 Sample Accession: GSM4139492 ID: 304139492 9624. donor17.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054915 Sample Accession: GSM4139491 ID: 304139491 9625. donor16.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054914 Sample Accession: GSM4139490 ID: 304139490 9626. donor14.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054913 Sample Accession: GSM4139489 ID: 304139489 9627. donor13.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054864 Sample Accession: GSM4139488 ID: 304139488 9628. donor11.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054863 Sample Accession: GSM4139487 ID: 304139487 9629. donor10.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054862 Sample Accession: GSM4139486 ID: 304139486 9630. donor9.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139485/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054861 Sample Accession: GSM4139485 ID: 304139485 9631. donor7.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139484/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054860 Sample Accession: GSM4139484 ID: 304139484 9632. donor5.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139483/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054859 Sample Accession: GSM4139483 ID: 304139483 9633. donor4.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054858 Sample Accession: GSM4139482 ID: 304139482 9634. donor3.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054857 Sample Accession: GSM4139481 ID: 304139481 9635. donor2.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054856 Sample Accession: GSM4139480 ID: 304139480 9636. donor1.h3k27ac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_h327ac Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054855 Sample Accession: GSM4139479 ID: 304139479 9637. donor53.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054854 Sample Accession: GSM4139478 ID: 304139478 9638. donor51.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139477/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054853 Sample Accession: GSM4139477 ID: 304139477 9639. donor50.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054852 Sample Accession: GSM4139476 ID: 304139476 9640. donor49.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054851 Sample Accession: GSM4139475 ID: 304139475 9641. donor48.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054850 Sample Accession: GSM4139474 ID: 304139474 9642. donor47.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054849 Sample Accession: GSM4139473 ID: 304139473 9643. donor46.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054800 Sample Accession: GSM4139472 ID: 304139472 9644. donor45.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054799 Sample Accession: GSM4139471 ID: 304139471 9645. donor44.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054798 Sample Accession: GSM4139470 ID: 304139470 9646. donor42.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139469/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054797 Sample Accession: GSM4139469 ID: 304139469 9647. donor41.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054796 Sample Accession: GSM4139468 ID: 304139468 9648. donor39.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054795 Sample Accession: GSM4139467 ID: 304139467 9649. donor36.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139466/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054794 Sample Accession: GSM4139466 ID: 304139466 9650. donor35.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139465/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054793 Sample Accession: GSM4139465 ID: 304139465 9651. donor33.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054792 Sample Accession: GSM4139464 ID: 304139464 9652. donor32.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054791 Sample Accession: GSM4139463 ID: 304139463 9653. donor31.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054790 Sample Accession: GSM4139462 ID: 304139462 9654. donor30.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054789 Sample Accession: GSM4139461 ID: 304139461 9655. donor29.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054788 Sample Accession: GSM4139460 ID: 304139460 9656. donor28.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054787 Sample Accession: GSM4139459 ID: 304139459 9657. donor25.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054786 Sample Accession: GSM4139458 ID: 304139458 9658. donor24.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054785 Sample Accession: GSM4139457 ID: 304139457 9659. donor23.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054768 Sample Accession: GSM4139456 ID: 304139456 9660. donor22.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054767 Sample Accession: GSM4139455 ID: 304139455 9661. donor21.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054766 Sample Accession: GSM4139454 ID: 304139454 9662. donor20.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054765 Sample Accession: GSM4139453 ID: 304139453 9663. donor19.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054764 Sample Accession: GSM4139452 ID: 304139452 9664. donor18.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054763 Sample Accession: GSM4139451 ID: 304139451 9665. donor17.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054762 Sample Accession: GSM4139450 ID: 304139450 9666. donor16.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139449/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054761 Sample Accession: GSM4139449 ID: 304139449 9667. donor15.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054760 Sample Accession: GSM4139448 ID: 304139448 9668. donor14.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139447/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054759 Sample Accession: GSM4139447 ID: 304139447 9669. donor13.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054758 Sample Accession: GSM4139446 ID: 304139446 9670. donor11.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054757 Sample Accession: GSM4139445 ID: 304139445 9671. donor10.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054756 Sample Accession: GSM4139444 ID: 304139444 9672. donor8.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139443/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054755 Sample Accession: GSM4139443 ID: 304139443 9673. donor7.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139442/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054754 Sample Accession: GSM4139442 ID: 304139442 9674. donor6.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139441/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054753 Sample Accession: GSM4139441 ID: 304139441 9675. donor5.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054736 Sample Accession: GSM4139440 ID: 304139440 9676. donor4.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139439/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054735 Sample Accession: GSM4139439 ID: 304139439 9677. donor3.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139438/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054734 Sample Accession: GSM4139438 ID: 304139438 9678. donor2.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139437/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054733 Sample Accession: GSM4139437 ID: 304139437 9679. donor1.atac_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139436/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054732 Sample Accession: GSM4139436 ID: 304139436 9680. donor53.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139435/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054731 Sample Accession: GSM4139435 ID: 304139435 9681. donor51.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054730 Sample Accession: GSM4139434 ID: 304139434 9682. donor50.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139433/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054729 Sample Accession: GSM4139433 ID: 304139433 9683. donor49.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054728 Sample Accession: GSM4139432 ID: 304139432 9684. donor48.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139431/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054727 Sample Accession: GSM4139431 ID: 304139431 9685. donor44.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054726 Sample Accession: GSM4139430 ID: 304139430 9686. donor43.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139429/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054725 Sample Accession: GSM4139429 ID: 304139429 9687. donor42.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054724 Sample Accession: GSM4139428 ID: 304139428 9688. donor41.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054723 Sample Accession: GSM4139427 ID: 304139427 9689. donor40.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054722 Sample Accession: GSM4139426 ID: 304139426 9690. donor39.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139425/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054721 Sample Accession: GSM4139425 ID: 304139425 9691. donor38.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054704 Sample Accession: GSM4139424 ID: 304139424 9692. donor35.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054703 Sample Accession: GSM4139423 ID: 304139423 9693. donor34.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054702 Sample Accession: GSM4139422 ID: 304139422 9694. donor33.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054701 Sample Accession: GSM4139421 ID: 304139421 9695. donor32.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054700 Sample Accession: GSM4139420 ID: 304139420 9696. donor31.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054699 Sample Accession: GSM4139419 ID: 304139419 9697. donor30.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054698 Sample Accession: GSM4139418 ID: 304139418 9698. donor28.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054697 Sample Accession: GSM4139417 ID: 304139417 9699. donor27.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054696 Sample Accession: GSM4139416 ID: 304139416 9700. donor26.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054695 Sample Accession: GSM4139415 ID: 304139415 9701. donor25.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054694 Sample Accession: GSM4139414 ID: 304139414 9702. donor24.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054693 Sample Accession: GSM4139413 ID: 304139413 9703. donor23.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054692 Sample Accession: GSM4139412 ID: 304139412 9704. donor21.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054691 Sample Accession: GSM4139411 ID: 304139411 9705. donor20.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054690 Sample Accession: GSM4139410 ID: 304139410 9706. donor19.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054689 Sample Accession: GSM4139409 ID: 304139409 9707. donor18.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054656 Sample Accession: GSM4139408 ID: 304139408 9708. donor17.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054655 Sample Accession: GSM4139407 ID: 304139407 9709. donor16.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054654 Sample Accession: GSM4139406 ID: 304139406 9710. donor15.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054653 Sample Accession: GSM4139405 ID: 304139405 9711. donor14.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054652 Sample Accession: GSM4139404 ID: 304139404 9712. donor13.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054651 Sample Accession: GSM4139403 ID: 304139403 9713. donor12.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054650 Sample Accession: GSM4139402 ID: 304139402 9714. donor11.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139401/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054649 Sample Accession: GSM4139401 ID: 304139401 9715. donor10.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054648 Sample Accession: GSM4139400 ID: 304139400 9716. donor8.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054647 Sample Accession: GSM4139399 ID: 304139399 9717. donor7.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054646 Sample Accession: GSM4139398 ID: 304139398 9718. donor6.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054645 Sample Accession: GSM4139397 ID: 304139397 9719. donor5.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054644 Sample Accession: GSM4139396 ID: 304139396 9720. donor4.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054643 Sample Accession: GSM4139395 ID: 304139395 9721. donor3.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054642 Sample Accession: GSM4139394 ID: 304139394 9722. donor2.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054641 Sample Accession: GSM4139393 ID: 304139393 9723. donor1.atac_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_ATAC-seq Platform: GPL20301 Series: GSE139377 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4139nnn/GSM4139392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054592 Sample Accession: GSM4139392 ID: 304139392 9724. donor53.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054591 Sample Accession: GSM4139391 ID: 304139391 9725. donor53.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054590 Sample Accession: GSM4139390 ID: 304139390 9726. donor52.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054589 Sample Accession: GSM4139389 ID: 304139389 9727. donor52.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054588 Sample Accession: GSM4139388 ID: 304139388 9728. donor51.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054587 Sample Accession: GSM4139387 ID: 304139387 9729. donor51.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054586 Sample Accession: GSM4139386 ID: 304139386 9730. donor50.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054585 Sample Accession: GSM4139385 ID: 304139385 9731. donor50.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054584 Sample Accession: GSM4139384 ID: 304139384 9732. donor49.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054583 Sample Accession: GSM4139383 ID: 304139383 9733. donor49.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054582 Sample Accession: GSM4139382 ID: 304139382 9734. donor48.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054581 Sample Accession: GSM4139381 ID: 304139381 9735. donor47.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054580 Sample Accession: GSM4139380 ID: 304139380 9736. donor47.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054579 Sample Accession: GSM4139379 ID: 304139379 9737. donor46.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054578 Sample Accession: GSM4139378 ID: 304139378 9738. donor46.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054577 Sample Accession: GSM4139377 ID: 304139377 9739. donor45.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054976 Sample Accession: GSM4139376 ID: 304139376 9740. donor45.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054975 Sample Accession: GSM4139375 ID: 304139375 9741. donor44.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054974 Sample Accession: GSM4139374 ID: 304139374 9742. donor44.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054973 Sample Accession: GSM4139373 ID: 304139373 9743. donor43.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054972 Sample Accession: GSM4139372 ID: 304139372 9744. donor43.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054971 Sample Accession: GSM4139371 ID: 304139371 9745. donor42.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054970 Sample Accession: GSM4139370 ID: 304139370 9746. donor42.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054969 Sample Accession: GSM4139369 ID: 304139369 9747. donor41.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054968 Sample Accession: GSM4139368 ID: 304139368 9748. donor41.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054967 Sample Accession: GSM4139367 ID: 304139367 9749. donor40.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054966 Sample Accession: GSM4139366 ID: 304139366 9750. donor40.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054965 Sample Accession: GSM4139365 ID: 304139365 9751. donor39.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054964 Sample Accession: GSM4139364 ID: 304139364 9752. donor39.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054963 Sample Accession: GSM4139363 ID: 304139363 9753. donor38.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054962 Sample Accession: GSM4139362 ID: 304139362 9754. donor38.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054961 Sample Accession: GSM4139361 ID: 304139361 9755. donor37.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054912 Sample Accession: GSM4139360 ID: 304139360 9756. donor37.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054911 Sample Accession: GSM4139359 ID: 304139359 9757. donor36.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054910 Sample Accession: GSM4139358 ID: 304139358 9758. donor36.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054909 Sample Accession: GSM4139357 ID: 304139357 9759. donor35.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054908 Sample Accession: GSM4139356 ID: 304139356 9760. donor35.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054907 Sample Accession: GSM4139355 ID: 304139355 9761. donor34.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054906 Sample Accession: GSM4139354 ID: 304139354 9762. donor34.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054905 Sample Accession: GSM4139353 ID: 304139353 9763. donor33.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054904 Sample Accession: GSM4139352 ID: 304139352 9764. donor33.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054903 Sample Accession: GSM4139351 ID: 304139351 9765. donor32.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054902 Sample Accession: GSM4139350 ID: 304139350 9766. donor32.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054901 Sample Accession: GSM4139349 ID: 304139349 9767. donor31.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054900 Sample Accession: GSM4139348 ID: 304139348 9768. donor31.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054899 Sample Accession: GSM4139347 ID: 304139347 9769. donor30.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054898 Sample Accession: GSM4139346 ID: 304139346 9770. donor30.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054897 Sample Accession: GSM4139345 ID: 304139345 9771. donor29.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054848 Sample Accession: GSM4139344 ID: 304139344 9772. donor29.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054847 Sample Accession: GSM4139343 ID: 304139343 9773. donor28.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054846 Sample Accession: GSM4139342 ID: 304139342 9774. donor28.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054845 Sample Accession: GSM4139341 ID: 304139341 9775. donor27.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054844 Sample Accession: GSM4139340 ID: 304139340 9776. donor27.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054843 Sample Accession: GSM4139339 ID: 304139339 9777. donor26.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054842 Sample Accession: GSM4139338 ID: 304139338 9778. donor26.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054841 Sample Accession: GSM4139337 ID: 304139337 9779. donor25.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054840 Sample Accession: GSM4139336 ID: 304139336 9780. donor24.rna_il1b.rep3 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054839 Sample Accession: GSM4139335 ID: 304139335 9781. donor24.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054838 Sample Accession: GSM4139334 ID: 304139334 9782. donor24.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054837 Sample Accession: GSM4139333 ID: 304139333 9783. donor23.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054836 Sample Accession: GSM4139332 ID: 304139332 9784. donor23.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054835 Sample Accession: GSM4139331 ID: 304139331 9785. donor22.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054834 Sample Accession: GSM4139330 ID: 304139330 9786. donor22.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054833 Sample Accession: GSM4139329 ID: 304139329 9787. donor21.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054784 Sample Accession: GSM4139328 ID: 304139328 9788. donor21.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054783 Sample Accession: GSM4139327 ID: 304139327 9789. donor20.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054782 Sample Accession: GSM4139326 ID: 304139326 9790. donor20.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054781 Sample Accession: GSM4139325 ID: 304139325 9791. donor19.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054780 Sample Accession: GSM4139324 ID: 304139324 9792. donor19.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054779 Sample Accession: GSM4139323 ID: 304139323 9793. donor18.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054778 Sample Accession: GSM4139322 ID: 304139322 9794. donor18.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054777 Sample Accession: GSM4139321 ID: 304139321 9795. donor17.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054776 Sample Accession: GSM4139320 ID: 304139320 9796. donor17.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054775 Sample Accession: GSM4139319 ID: 304139319 9797. donor16.rna_il1b.rep4 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054774 Sample Accession: GSM4139318 ID: 304139318 9798. donor16.rna_il1b.rep3 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054773 Sample Accession: GSM4139317 ID: 304139317 9799. donor16.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054772 Sample Accession: GSM4139316 ID: 304139316 9800. donor16.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054771 Sample Accession: GSM4139315 ID: 304139315 9801. donor15.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054770 Sample Accession: GSM4139314 ID: 304139314 9802. donor15.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054769 Sample Accession: GSM4139313 ID: 304139313 9803. donor14.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054752 Sample Accession: GSM4139312 ID: 304139312 9804. donor14.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054751 Sample Accession: GSM4139311 ID: 304139311 9805. donor13.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054750 Sample Accession: GSM4139310 ID: 304139310 9806. donor13.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054749 Sample Accession: GSM4139309 ID: 304139309 9807. donor12.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054748 Sample Accession: GSM4139308 ID: 304139308 9808. donor12.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054747 Sample Accession: GSM4139307 ID: 304139307 9809. donor11.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054746 Sample Accession: GSM4139306 ID: 304139306 9810. donor11.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054745 Sample Accession: GSM4139305 ID: 304139305 9811. donor10.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054744 Sample Accession: GSM4139304 ID: 304139304 9812. donor10.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054743 Sample Accession: GSM4139303 ID: 304139303 9813. donor9.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054742 Sample Accession: GSM4139302 ID: 304139302 9814. donor9.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054741 Sample Accession: GSM4139301 ID: 304139301 9815. donor8.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054740 Sample Accession: GSM4139300 ID: 304139300 9816. donor8.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054739 Sample Accession: GSM4139299 ID: 304139299 9817. donor7.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054738 Sample Accession: GSM4139298 ID: 304139298 9818. donor7.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054737 Sample Accession: GSM4139297 ID: 304139297 9819. donor6.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054720 Sample Accession: GSM4139296 ID: 304139296 9820. donor6.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054719 Sample Accession: GSM4139295 ID: 304139295 9821. donor5.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B 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Sample Accession: GSM4139291 ID: 304139291 9825. donor3.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054714 Sample Accession: GSM4139290 ID: 304139290 9826. donor3.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054713 Sample Accession: GSM4139289 ID: 304139289 9827. donor2.rna_il1b.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B treated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054712 Sample Accession: GSM4139288 ID: 304139288 9828. donor2.rna_il1b.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_IL-1B 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download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054566 Sample Accession: GSM4139238 ID: 304139238 9878. donor28.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054565 Sample Accession: GSM4139237 ID: 304139237 9879. donor27.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054564 Sample Accession: GSM4139236 ID: 304139236 9880. donor27.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054563 Sample Accession: GSM4139235 ID: 304139235 9881. 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download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054959 Sample Accession: GSM4139231 ID: 304139231 9885. donor24.rna_notx.rep3 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054958 Sample Accession: GSM4139230 ID: 304139230 9886. donor24.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054957 Sample Accession: GSM4139229 ID: 304139229 9887. donor24.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054956 Sample Accession: GSM4139228 ID: 304139228 9888. 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download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054945 Sample Accession: GSM4139217 ID: 304139217 9899. donor18.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054896 Sample Accession: GSM4139216 ID: 304139216 9900. donor17.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054895 Sample Accession: GSM4139215 ID: 304139215 9901. donor17.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054894 Sample Accession: GSM4139214 ID: 304139214 9902. donor16.rna_notx.rep4 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054893 Sample Accession: GSM4139213 ID: 304139213 9903. donor16.rna_notx.rep3 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054892 Sample Accession: GSM4139212 ID: 304139212 9904. donor16.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054891 Sample Accession: GSM4139211 ID: 304139211 9905. donor16.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054890 Sample Accession: GSM4139210 ID: 304139210 9906. donor15.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054889 Sample Accession: GSM4139209 ID: 304139209 9907. donor15.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054888 Sample Accession: GSM4139208 ID: 304139208 9908. donor14.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054887 Sample Accession: GSM4139207 ID: 304139207 9909. donor14.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054886 Sample Accession: GSM4139206 ID: 304139206 9910. donor13.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054885 Sample Accession: GSM4139205 ID: 304139205 9911. donor13.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054884 Sample Accession: GSM4139204 ID: 304139204 9912. donor11.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054883 Sample Accession: GSM4139203 ID: 304139203 9913. donor11.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054882 Sample Accession: GSM4139202 ID: 304139202 9914. donor10.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054881 Sample Accession: GSM4139201 ID: 304139201 9915. donor10.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054832 Sample Accession: GSM4139200 ID: 304139200 9916. donor9.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054831 Sample Accession: GSM4139199 ID: 304139199 9917. donor9.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054830 Sample Accession: GSM4139198 ID: 304139198 9918. donor8.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054829 Sample Accession: GSM4139197 ID: 304139197 9919. donor8.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054828 Sample Accession: GSM4139196 ID: 304139196 9920. donor7.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054827 Sample Accession: GSM4139195 ID: 304139195 9921. donor6.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054826 Sample Accession: GSM4139194 ID: 304139194 9922. donor6.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054825 Sample Accession: GSM4139193 ID: 304139193 9923. donor5.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054824 Sample Accession: GSM4139192 ID: 304139192 9924. donor5.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054823 Sample Accession: GSM4139191 ID: 304139191 9925. donor4.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054822 Sample Accession: GSM4139190 ID: 304139190 9926. donor4.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054821 Sample Accession: GSM4139189 ID: 304139189 9927. donor3.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054820 Sample Accession: GSM4139188 ID: 304139188 9928. donor3.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054819 Sample Accession: GSM4139187 ID: 304139187 9929. donor2.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054818 Sample Accession: GSM4139186 ID: 304139186 9930. donor2.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054817 Sample Accession: GSM4139185 ID: 304139185 9931. donor1.rna_notx.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054560 Sample Accession: GSM4139184 ID: 304139184 9932. donor1.rna_notx.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell_untreated_RNA-seq Platform: GPL20301 Series: GSE139377 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7054559 Sample Accession: GSM4139183 ID: 304139183 9933. Runx1cPos_5Dox ATAC-Seq Organism: Homo sapiens Source name: hESC H9 cell line Platform: GPL18573 Series: GSE137667 GSE137673 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6867650 Sample Accession: GSM4083942 ID: 304083942 9934. Runx1cPos_3Dox ATAC-Seq Organism: Homo sapiens Source name: hESC H9 cell line Platform: GPL18573 Series: GSE137667 GSE137673 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6867649 Sample Accession: GSM4083941 ID: 304083941 9935. Runx1cPos_10Dox ATAC-Seq Organism: Homo sapiens Source name: hESC H9 cell line Platform: GPL18573 Series: GSE137667 GSE137673 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6867648 Sample Accession: GSM4083940 ID: 304083940 9936. Runx1cPos_0Dox ATAC-Seq Organism: Homo sapiens Source name: hESC H9 cell line Platform: GPL18573 Series: GSE137667 GSE137673 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6867647 Sample Accession: GSM4083939 ID: 304083939 9937. Runx1cNeg_5Dox ATAC-Seq Organism: Homo sapiens Source name: hESC H9 cell line Platform: GPL18573 Series: GSE137667 GSE137673 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6867646 Sample Accession: GSM4083938 ID: 304083938 9938. Runx1cNeg_3Dox ATAC-Seq Organism: Homo sapiens Source name: hESC H9 cell line Platform: GPL18573 Series: GSE137667 GSE137673 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6867645 Sample Accession: GSM4083937 ID: 304083937 9939. Runx1cNeg_10Dox ATAC-Seq Organism: Homo sapiens Source name: hESC H9 cell line Platform: GPL18573 Series: GSE137667 GSE137673 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6867644 Sample Accession: GSM4083936 ID: 304083936 9940. Runx1cNeg_0Dox ATAC-Seq Organism: Homo sapiens Source name: hESC H9 cell line Platform: GPL18573 Series: GSE137667 GSE137673 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6867643 Sample Accession: GSM4083935 ID: 304083935 9941. WT MZ ATAC Organism: Mus musculus Source name: CD21-positive Marginal Zone B cells isolated from WT NOD mouse Platform: GPL17021 Series: GSE114830 GSE114831 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3151nnn/GSM3151270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4117258 Sample Accession: GSM3151270 ID: 303151270 9942. B1411 MZ ATAC Organism: Mus musculus Source name: CD23-positive Marginal Zone B cells isolated from WT NOD mouse Platform: GPL17021 Series: GSE114830 GSE114831 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3151nnn/GSM3151269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4117257 Sample Accession: GSM3151269 ID: 303151269 9943. WT FO ATAC Organism: Mus musculus Source name: CD21-positive Follicular B cells isolated from B1411 mouse Platform: GPL17021 Series: GSE114830 GSE114831 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3151nnn/GSM3151268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4117256 Sample Accession: GSM3151268 ID: 303151268 9944. B1411 FO ATAC Organism: Mus musculus Source name: CD23-positive Follicular B cells isolated from B1411 mouse Platform: GPL17021 Series: GSE114830 GSE114831 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3151nnn/GSM3151267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4117255 Sample Accession: GSM3151267 ID: 303151267 9945. d4-Atg7 KO_rep2 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364445 Sample Accession: GSM4559914 ID: 304559914 9946. d4-Atg7 KO_rep1 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364444 Sample Accession: GSM4559913 ID: 304559913 9947. d4-Control_rep2 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364443 Sample Accession: GSM4559912 ID: 304559912 9948. d4-Control_rep1 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364442 Sample Accession: GSM4559911 ID: 304559911 9949. d2-Atg7 KO_rep2 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364441 Sample Accession: GSM4559910 ID: 304559910 9950. d2-Atg7 KO_rep1 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364440 Sample Accession: GSM4559909 ID: 304559909 9951. d2-Control_rep2 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364439 Sample Accession: GSM4559908 ID: 304559908 9952. d2-Control_rep1 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364438 Sample Accession: GSM4559907 ID: 304559907 9953. ESC_rep2 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364437 Sample Accession: GSM4559906 ID: 304559906 9954. ESC_rep1 [ATAC-seq] Organism: Mus musculus Source name: Embryonic Stem Cells (ESCs) Platform: GPL21273 Series: GSE150866 GSE150870 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8364436 Sample Accession: GSM4559905 ID: 304559905 9955. ATAC-seq_N2RA51193-2 Organism: Mus musculus Source name: Spleenocytes Platform: GPL13112 Series: GSE149990 GSE149992 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4519nnn/GSM4519308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8272866 Sample Accession: GSM4519308 ID: 304519308 9956. ATAC-seq_N2RA828-2 Organism: Mus musculus Source name: Spleenocytes Platform: GPL13112 Series: GSE149990 GSE149992 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4519nnn/GSM4519307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8272865 Sample Accession: GSM4519307 ID: 304519307 9957. ATAC-seq_N2RAMZB-4 Organism: Mus musculus Source name: Spleenocytes Platform: GPL13112 Series: GSE149990 GSE149992 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4519nnn/GSM4519306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8272864 Sample Accession: GSM4519306 ID: 304519306 9958. ATAC-seq_N2RAMZB-2 Organism: Mus musculus Source name: Spleenocytes Platform: GPL13112 Series: GSE149990 GSE149992 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4519nnn/GSM4519305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8272863 Sample Accession: GSM4519305 ID: 304519305 9959. ATAC-seq_N2WT51195-2 Organism: Mus musculus Source name: Spleenocytes Platform: GPL13112 Series: GSE149990 GSE149992 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4519nnn/GSM4519304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8272862 Sample Accession: GSM4519304 ID: 304519304 9960. ATAC-seq_N2WT828-2 Organism: Mus musculus Source name: Spleenocytes Platform: GPL13112 Series: GSE149990 GSE149992 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4519nnn/GSM4519303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8272861 Sample Accession: GSM4519303 ID: 304519303 9961. ATAC-seq_N2WTMZB-4 Organism: Mus musculus Source name: Spleenocytes Platform: GPL13112 Series: GSE149990 GSE149992 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4519nnn/GSM4519302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8272860 Sample Accession: GSM4519302 ID: 304519302 9962. ATAC-seq_N2WTMZB-2 Organism: Mus musculus Source name: Spleenocytes Platform: GPL13112 Series: GSE149990 GSE149992 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4519nnn/GSM4519301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8272859 Sample Accession: GSM4519301 ID: 304519301 9963. ATAC-Seq Tex Term_rep3 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248228 Sample Accession: GSM4516278 ID: 304516278 9964. ATAC-Seq Tex Term_rep2 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248227 Sample Accession: GSM4516277 ID: 304516277 9965. ATAC-Seq Tex Term_rep1 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248226 Sample Accession: GSM4516276 ID: 304516276 9966. ATAC-Seq TexInt_rep3 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248225 Sample Accession: GSM4516275 ID: 304516275 9967. ATAC-Seq TexInt_rep2 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248224 Sample Accession: GSM4516274 ID: 304516274 9968. ATAC-Seq TexInt_rep1 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248223 Sample Accession: GSM4516273 ID: 304516273 9969. ATAC-Seq TexProg2_rep3 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248222 Sample Accession: GSM4516272 ID: 304516272 9970. ATAC-Seq TexProg2_rep2 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248221 Sample Accession: GSM4516271 ID: 304516271 9971. ATAC-Seq TexProg2_rep1 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248220 Sample Accession: GSM4516270 ID: 304516270 9972. ATAC-Seq TexProg1_rep2 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248219 Sample Accession: GSM4516269 ID: 304516269 9973. ATAC-Seq TexProg1_rep1 Organism: Mus musculus Source name: CD8 T cells Platform: GPL21626 Series: GSE149877 GSE149879 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4516nnn/GSM4516268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8248218 Sample Accession: GSM4516268 ID: 304516268 9974. GA-12_S25_ATAC_Seq Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590486 Sample Accession: GSM3690723 ID: 303690723 9975. GA-11_S24_ATAC_Seq Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590485 Sample Accession: GSM3690722 ID: 303690722 9976. GA-09_S23_ATAC_Seq Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590484 Sample Accession: GSM3690721 ID: 303690721 9977. GA-08_S22_ATAC_Seq Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590483 Sample Accession: GSM3690720 ID: 303690720 9978. GA-07_S21_ATAC_Seq Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590482 Sample Accession: GSM3690719 ID: 303690719 9979. GA-05_S20_ATAC_Seq Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590481 Sample Accession: GSM3690718 ID: 303690718 9980. GA-04_S19_ATAC_Seq Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590480 Sample Accession: GSM3690717 ID: 303690717 9981. DN_21_ATAC_Seq Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590479 Sample Accession: GSM3690716 ID: 303690716 9982. DN_16_ATAC_Seq Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590478 Sample Accession: GSM3690715 ID: 303690715 9983. DN_14_ATAC_Seq Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590477 Sample Accession: GSM3690714 ID: 303690714 9984. DN_12_ATAC_Seq Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590476 Sample Accession: GSM3690713 ID: 303690713 9985. DN_11_ATAC_Seq Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590475 Sample Accession: GSM3690712 ID: 303690712 9986. DN_09_ATAC_Seq Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590474 Sample Accession: GSM3690711 ID: 303690711 9987. DN_08_ATAC_Seq Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590473 Sample Accession: GSM3690710 ID: 303690710 9988. DN_07_ATAC_Seq Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590472 Sample Accession: GSM3690709 ID: 303690709 9989. CN_21_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590471 Sample Accession: GSM3690708 ID: 303690708 9990. CN_20_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590470 Sample Accession: GSM3690707 ID: 303690707 9991. CN_19_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590469 Sample Accession: GSM3690706 ID: 303690706 9992. CN_18_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590468 Sample Accession: GSM3690705 ID: 303690705 9993. CN_17_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590467 Sample Accession: GSM3690704 ID: 303690704 9994. CN_16_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590466 Sample Accession: GSM3690703 ID: 303690703 9995. CN_15_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590465 Sample Accession: GSM3690702 ID: 303690702 9996. CN_14_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590464 Sample Accession: GSM3690701 ID: 303690701 9997. CN_13_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590463 Sample Accession: GSM3690700 ID: 303690700 9998. CN_12_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590462 Sample Accession: GSM3690699 ID: 303690699 9999. CN_11_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590461 Sample Accession: GSM3690698 ID: 303690698 10000. CN_10_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590460 Sample Accession: GSM3690697 ID: 303690697 10001. CN_09_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590459 Sample Accession: GSM3690696 ID: 303690696 10002. CN_08_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590458 Sample Accession: GSM3690695 ID: 303690695 10003. CN_07_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590457 Sample Accession: GSM3690694 ID: 303690694 10004. CN_06_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590456 Sample Accession: GSM3690693 ID: 303690693 10005. CN_05_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590455 Sample Accession: GSM3690692 ID: 303690692 10006. CN_04_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590454 Sample Accession: GSM3690691 ID: 303690691 10007. CN_03_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590453 Sample Accession: GSM3690690 ID: 303690690 10008. CN_02_ATAC_Seq Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL11154 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590452 Sample Accession: GSM3690689 ID: 303690689 10009. GA_18_USR17005256L Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590547 Sample Accession: GSM3690784 ID: 303690784 10010. GA_16_USR17005255L Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590546 Sample Accession: GSM3690783 ID: 303690783 10011. GA_09_USR17005254L Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590545 Sample Accession: GSM3690782 ID: 303690782 10012. GA_08_USR17005253L Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590544 Sample Accession: GSM3690781 ID: 303690781 10013. GA_07_USR18003081L Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590543 Sample Accession: GSM3690780 ID: 303690780 10014. GA_05_USR18003080L Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590542 Sample Accession: GSM3690779 ID: 303690779 10015. GA_04_USR18003079L Organism: Homo sapiens Source name: GABergic , day-28 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590541 Sample Accession: GSM3690778 ID: 303690778 10016. DN_21_USR17005265L Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590540 Sample Accession: GSM3690777 ID: 303690777 10017. DN_18_USR17005264L Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590539 Sample Accession: GSM3690776 ID: 303690776 10018. DN_16_USR17005263L Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590538 Sample Accession: GSM3690775 ID: 303690775 10019. DN_12_USR17005262L Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590537 Sample Accession: GSM3690774 ID: 303690774 10020. DN_11_USR17005261L Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590536 Sample Accession: GSM3690773 ID: 303690773 10021. DN_09_USR17005260L Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590535 Sample Accession: GSM3690772 ID: 303690772 10022. DN_08_USR17005259L Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590534 Sample Accession: GSM3690771 ID: 303690771 10023. DN_07_USR17005258L Organism: Homo sapiens Source name: Dopaminergic, day-30 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590533 Sample Accession: GSM3690770 ID: 303690770 10024. CN15_21_USR17005236L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590532 Sample Accession: GSM3690769 ID: 303690769 10025. CN15_20_USR17005235L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590531 Sample Accession: GSM3690768 ID: 303690768 10026. CN15_19_USR17005234L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590530 Sample Accession: GSM3690767 ID: 303690767 10027. CN15_18_USR17005233L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590529 Sample Accession: GSM3690766 ID: 303690766 10028. CN15_17_USR17005232L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590528 Sample Accession: GSM3690765 ID: 303690765 10029. CN15_16_USR17005231L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590527 Sample Accession: GSM3690764 ID: 303690764 10030. CN15_14_USR17005230L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590526 Sample Accession: GSM3690763 ID: 303690763 10031. CN15_13_USR17005229L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590525 Sample Accession: GSM3690762 ID: 303690762 10032. CN15_12_USR17005228L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590524 Sample Accession: GSM3690761 ID: 303690761 10033. CN15_11_USR17005227L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590523 Sample Accession: GSM3690760 ID: 303690760 10034. CN15_10_USR17005226L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590522 Sample Accession: GSM3690759 ID: 303690759 10035. CN15_09_USR17005225L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590521 Sample Accession: GSM3690758 ID: 303690758 10036. CN15_08_USR17005224L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590520 Sample Accession: GSM3690757 ID: 303690757 10037. CN15_07_USR17005223L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590519 Sample Accession: GSM3690756 ID: 303690756 10038. CN15_05_USR17005221L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590518 Sample Accession: GSM3690755 ID: 303690755 10039. CN15_04_USR17005220L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590517 Sample Accession: GSM3690754 ID: 303690754 10040. CN15_03_USR17005219L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590516 Sample Accession: GSM3690753 ID: 303690753 10041. CN15_02_USR17005218L Organism: Homo sapiens Source name: Glutmatergic, day-15 post induction Platform: GPL24676 Series: GSE129017 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5590515 Sample Accession: GSM3690752 ID: 303690752 10042. ATAC_Nutlin Organism: Homo sapiens Source name: HCT116 Platform: GPL18573 Series: GSE130205 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725695 Sample Accession: GSM3733774 ID: 303733774 10043. ATAC_DMSO Organism: Homo sapiens Source name: HCT116 Platform: GPL18573 Series: GSE130205 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725694 Sample Accession: GSM3733773 ID: 303733773 10044. ATAC_NFL_OE_2 Organism: Homo sapiens Source name: primary human normal lung fibroblast Platform: GPL18573 Series: GSE114844 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959084 Sample Accession: GSM4110239 ID: 304110239 10045. ATAC_NFL_OE_1 Organism: Homo sapiens Source name: primary human normal lung fibroblast Platform: GPL18573 Series: GSE114844 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959083 Sample Accession: GSM4110238 ID: 304110238 10046. ATAC_NLF_2 Organism: Homo sapiens Source name: primary human normal lung fibroblast Platform: GPL18573 Series: GSE114844 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959082 Sample Accession: GSM4110237 ID: 304110237 10047. ATAC_NLF_1 Organism: Homo sapiens Source name: primary human normal lung fibroblast Platform: GPL18573 Series: GSE114844 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959081 Sample Accession: GSM4110236 ID: 304110236 10048. ATAC-seq_Zebrafish_EGFP-121-3_BL Organism: Danio rerio Source name: Melanoma cell line Platform: GPL14875 Series: GSE142238 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4223nnn/GSM4223595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7401797 Sample Accession: GSM4223595 ID: 304223595 10049. ATAC-seq_Zebrafish_EGFP-121-5_BL Organism: Danio rerio Source name: Melanoma cell line Platform: GPL14875 Series: GSE142238 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4223nnn/GSM4223594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7401796 Sample Accession: GSM4223594 ID: 304223594 10050. ATAC-seq_Zebrafish_EGFP-121-1_BL Organism: Danio rerio Source name: Melanoma cell line Platform: GPL14875 Series: GSE142238 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4223nnn/GSM4223593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7401795 Sample Accession: GSM4223593 ID: 304223593 10051. ATAC-seq_Zebrafish_ZMEL1_BL Organism: Danio rerio Source name: Melanoma cell line Platform: GPL14875 Series: GSE142238 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4223nnn/GSM4223592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7401794 Sample Accession: GSM4223592 ID: 304223592 10052. ATAC-seq_U937 Organism: Homo sapiens Source name: Human U937 cells Platform: GPL18573 Series: GSE137647 GSE137656 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6865326 Sample Accession: GSM4083684 ID: 304083684 10053. ATAC-seq_NB4 Organism: Homo sapiens Source name: Human NB4 cells Platform: GPL18573 Series: GSE137647 GSE137656 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6865325 Sample Accession: GSM4083683 ID: 304083683 10054. ATAC-seq_MV4-11 Organism: Homo sapiens Source name: Human MV4-11 cells Platform: GPL18573 Series: GSE137647 GSE137656 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6865324 Sample Accession: GSM4083682 ID: 304083682 10055. ATAC-seq_MKPL-1 Organism: Homo sapiens Source name: Human MKPL-1 cells Platform: GPL18573 Series: GSE137647 GSE137656 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6865323 Sample Accession: GSM4083681 ID: 304083681 10056. ATAC-seq_K562 Organism: Homo sapiens Source name: Human K562 cells Platform: GPL18573 Series: GSE137647 GSE137656 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4083nnn/GSM4083680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6865322 Sample Accession: GSM4083680 ID: 304083680 10057. ATAC-seq_Arid1a-cKO_rep2 Organism: Mus musculus Source name: Retinal ganglion cells Platform: GPL21273 Series: GSE147844 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4447nnn/GSM4447021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8037002 Sample Accession: GSM4447021 ID: 304447021 10058. ATAC-seq_Arid1a-cKO_rep1 Organism: Mus musculus Source name: Retinal ganglion cells Platform: GPL21273 Series: GSE147844 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4447nnn/GSM4447020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8037001 Sample Accession: GSM4447020 ID: 304447020 10059. ATAC-seq_Arid1a-WT_rep2 Organism: Mus musculus Source name: Retinal ganglion cells Platform: GPL21273 Series: GSE147844 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4447nnn/GSM4447019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8037000 Sample Accession: GSM4447019 ID: 304447019 10060. ATAC-seq_Arid1a-WT_rep1 Organism: Mus musculus Source name: Retinal ganglion cells Platform: GPL21273 Series: GSE147844 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4447nnn/GSM4447018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX8036999 Sample Accession: GSM4447018 ID: 304447018 10061. UbiqTdT_ATACseq Organism: Gallus gallus Source name: Developing retinal cells Platform: GPL19005 Series: GSE141019 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4192nnn/GSM4192516/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7217448 Sample Accession: GSM4192516 ID: 304192516 10062. ThrbCRM1GFP_ATACseq Organism: Gallus gallus Source name: Developing retinal cells Platform: GPL19005 Series: GSE141019 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4192nnn/GSM4192515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7217447 Sample Accession: GSM4192515 ID: 304192515 10063. ATAC-seq; distal femur E15.5 Organism: Mus musculus Source name: Distal femoral growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4213nnn/GSM4213757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7347480 Sample Accession: GSM4213757 ID: 304213757 10064. ATAC-seq; proximal femur E15.5 Organism: Mus musculus Source name: Proximal femoral growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4213nnn/GSM4213756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7347479 Sample Accession: GSM4213756 ID: 304213756 10065. ATAC-seq; Col2a-eCFP Proximal Femur E15.5 Organism: Mus musculus Source name: Proximal femoral growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4213nnn/GSM4213755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7347478 Sample Accession: GSM4213755 ID: 304213755 10066. ATAC-seq; Col2a-eCFP Distal Femur E15.5 Organism: Mus musculus Source name: Distal femoral growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4213nnn/GSM4213754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7347477 Sample Accession: GSM4213754 ID: 304213754 10067. 180423_WT_6DL_UNC2400_S3 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799583 Sample Accession: GSM3753500 ID: 303753500 10068. 180221_WT_6DL_UNC2400_S2 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799582 Sample Accession: GSM3753499 ID: 303753499 10069. 180423_WT_6DL_UNC1999_S2 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799581 Sample Accession: GSM3753498 ID: 303753498 10070. 180221_WT_6DL_UNC1999_S1 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799580 Sample Accession: GSM3753497 ID: 303753497 10071. 180424_WT_6DL_GSKJ5_S6 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799579 Sample Accession: GSM3753496 ID: 303753496 10072. 180222_WT_6DL_GSKJ5_S12 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799578 Sample Accession: GSM3753495 ID: 303753495 10073. 180424_WT_6DL_GSKJ4_S5 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799577 Sample Accession: GSM3753494 ID: 303753494 10074. 180222_WT_6DL_GSKJ4_S11 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799576 Sample Accession: GSM3753493 ID: 303753493 10075. 181002_WT_6DL_GSK343_S8 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753492/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799575 Sample Accession: GSM3753492 ID: 303753492 10076. 180423_WT_6DL_GSK343_S4 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799574 Sample Accession: GSM3753491 ID: 303753491 10077. 180221_WT_6DL_GSK343_S3 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799573 Sample Accession: GSM3753490 ID: 303753490 10078. 180424_WT_6DL_A395N_S4 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799572 Sample Accession: GSM3753489 ID: 303753489 10079. 180221_WT_6DL_A395N_S4 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799571 Sample Accession: GSM3753488 ID: 303753488 10080. 180424_WT_6DL_A395_S3 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799570 Sample Accession: GSM3753487 ID: 303753487 10081. 180222_WT_6DL_A395_S4 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799569 Sample Accession: GSM3753486 ID: 303753486 10082. 180419_WT_6DL_S1 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753485/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799568 Sample Accession: GSM3753485 ID: 303753485 10083. 180222_WT_6DL_S7 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753484/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799567 Sample Accession: GSM3753484 ID: 303753484 10084. 180419_WT_6DA_S3 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753483/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799566 Sample Accession: GSM3753483 ID: 303753483 10085. 180221_WT_6DA_S5 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799565 Sample Accession: GSM3753482 ID: 303753482 10086. 181002_WT_2DL_undifferentiated_S2 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799564 Sample Accession: GSM3753481 ID: 303753481 10087. 180419_WT_2DL_undifferentiated_S1 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799563 Sample Accession: GSM3753480 ID: 303753480 10088. 180222_WT_2DL_undifferentiated_S5 Organism: Mus musculus Source name: wild-type Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799562 Sample Accession: GSM3753479 ID: 303753479 10089. 181002_KO_6DL_unsorted_untreated_S6 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799561 Sample Accession: GSM3753478 ID: 303753478 10090. 180419_KO_6DL_unsorted_untreated_S2 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753477/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799560 Sample Accession: GSM3753477 ID: 303753477 10091. 180222_KO_6DL_unsorted_untreated_S8 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799559 Sample Accession: GSM3753476 ID: 303753476 10092. 180419_KO_6DL_UNC2400_S6 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799558 Sample Accession: GSM3753475 ID: 303753475 10093. 180221_KO_6DL_UNC2400_S10 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799557 Sample Accession: GSM3753474 ID: 303753474 10094. 180419_KO_6DL_UNC1999_S5 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799556 Sample Accession: GSM3753473 ID: 303753473 10095. 180221_KO_6DL_UNC1999_S9 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799555 Sample Accession: GSM3753472 ID: 303753472 10096. 180423_KO_6DL_GSKJ5_S1 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799554 Sample Accession: GSM3753471 ID: 303753471 10097. 180222_KO_6DL_GSKJ5_S3 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799553 Sample Accession: GSM3753470 ID: 303753470 10098. 180424_KO_6DL_GSKJ4_S2 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753469/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799552 Sample Accession: GSM3753469 ID: 303753469 10099. 180222_KO_6DL_GSKJ4_S2 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799551 Sample Accession: GSM3753468 ID: 303753468 10100. 181002_KO_6DL_GSK343_1_S1 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799550 Sample Accession: GSM3753467 ID: 303753467 10101. 181002_KO_6DL_GSK343_7_S7 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753466/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799549 Sample Accession: GSM3753466 ID: 303753466 10102. 180423_KO_6DL_GSK343_S5 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753465/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799548 Sample Accession: GSM3753465 ID: 303753465 10103. 180221_KO_6DL_GSK343_S11 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799547 Sample Accession: GSM3753464 ID: 303753464 10104. 180419_KO_6DL_GFP_plus_S3 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799546 Sample Accession: GSM3753463 ID: 303753463 10105. 180222_KO_6DL_GFP_pos_S9 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799545 Sample Accession: GSM3753462 ID: 303753462 10106. 180419_KO_6DL_GFP_S4 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799544 Sample Accession: GSM3753461 ID: 303753461 10107. 180222_KO_6DL_GFP_neg_S10 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799543 Sample Accession: GSM3753460 ID: 303753460 10108. 180424_KO_6DL_A395N_S1 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799542 Sample Accession: GSM3753459 ID: 303753459 10109. 180222_KO_6DL_A395N_S1 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799541 Sample Accession: GSM3753458 ID: 303753458 10110. 180423_KO_6DL_A395_S6 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799540 Sample Accession: GSM3753457 ID: 303753457 10111. 180221_KO_6DL_A395_S12 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799539 Sample Accession: GSM3753456 ID: 303753456 10112. 181002_KO_6DA_unsorted_S4 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799538 Sample Accession: GSM3753455 ID: 303753455 10113. 180419_KO_6DA_unsorted_S4 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799537 Sample Accession: GSM3753454 ID: 303753454 10114. 180221_KO_6DA_unsorted_S8 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799536 Sample Accession: GSM3753453 ID: 303753453 10115. 181002_KO_6DA_GFP_plus_S5 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799535 Sample Accession: GSM3753452 ID: 303753452 10116. 180419_KO_6DA_GFP_plus_S5 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799534 Sample Accession: GSM3753451 ID: 303753451 10117. 180221_KO_6DA_GFP_pos_S6 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799533 Sample Accession: GSM3753450 ID: 303753450 10118. 180419_KO_6DA_GFP_neg_S6 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753449/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799532 Sample Accession: GSM3753449 ID: 303753449 10119. 180221_KO_6DA_GFP_neg_S7 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799531 Sample Accession: GSM3753448 ID: 303753448 10120. 181002_KO_2DL_undifferentiated_S3 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753447/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799530 Sample Accession: GSM3753447 ID: 303753447 10121. 180419_KO_2DL_undifferentiated_S2 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799529 Sample Accession: GSM3753446 ID: 303753446 10122. 180222_KO_2DL_undifferentiated_S6 Organism: Mus musculus Source name: mTert-/- Embryonic stem cells Platform: GPL19057 Series: GSE130780 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3753nnn/GSM3753445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5799528 Sample Accession: GSM3753445 ID: 303753445 10123. ATAC-seq distal radius - E15.5 Organism: Mus musculus Source name: Distal radial growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3487nnn/GSM3487617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5058636 Sample Accession: GSM3487617 ID: 303487617 10124. ATAC-seq proximal radius - E15.5 Organism: Mus musculus Source name: Proximal radial growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3487nnn/GSM3487616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5058635 Sample Accession: GSM3487616 ID: 303487616 10125. ATAC-seq distal humerus - E15.5 Organism: Mus musculus Source name: Distal humeral growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3487nnn/GSM3487615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5058634 Sample Accession: GSM3487615 ID: 303487615 10126. ATAC-seq proximal humerus - E15.5 Organism: Mus musculus Source name: Proximal humeral growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3487nnn/GSM3487614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5058633 Sample Accession: GSM3487614 ID: 303487614 10127. ATAC-seq distal tibia - E15.5 Organism: Mus musculus Source name: Distal tibial growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3487nnn/GSM3487613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5058632 Sample Accession: GSM3487613 ID: 303487613 10128. ATAC-seq proximal tibia - E15.5 Organism: Mus musculus Source name: Proximal tibial growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3487nnn/GSM3487612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5058631 Sample Accession: GSM3487612 ID: 303487612 10129. ATAC-seq distal femur - E15.5 Organism: Mus musculus Source name: Distal femoral growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3487nnn/GSM3487611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5058630 Sample Accession: GSM3487611 ID: 303487611 10130. ATAC-seq proximal femur - E15.5 Organism: Mus musculus Source name: Proximal femoral growth plates E15.5 Platform: GPL19057 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3487nnn/GSM3487610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5058629 Sample Accession: GSM3487610 ID: 303487610 10131. ATAC-seq distal radius E59 Organism: Homo sapiens Source name: Distal radial growth plates E59 Platform: GPL18573 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5723727 Sample Accession: GSM3733322 ID: 303733322 10132. ATAC-seq proximal radius E59 Organism: Homo sapiens Source name: Proximal radial growth plates E59 Platform: GPL18573 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5723726 Sample Accession: GSM3733321 ID: 303733321 10133. ATAC-seq distal humerus E59 Organism: Homo sapiens Source name: Distal humeral growth plates E59 Platform: GPL18573 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5723725 Sample Accession: GSM3733320 ID: 303733320 10134. ATAC-seq proximal humerus E59 Organism: Homo sapiens Source name: Proximal humeral growth plates E59 Platform: GPL18573 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5723724 Sample Accession: GSM3733319 ID: 303733319 10135. ATAC-seq distal tibia E59 Organism: Homo sapiens Source name: Distal tibial growth plates E59 Platform: GPL18573 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5723723 Sample Accession: GSM3733318 ID: 303733318 10136. ATAC-seq proximal tibia E59 Organism: Homo sapiens Source name: Proximal tibial growth plates E59 Platform: GPL18573 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5723722 Sample Accession: GSM3733317 ID: 303733317 10137. ATAC-seq distal femur E59 Organism: Homo sapiens Source name: Distal femoral growth plates E59 Platform: GPL18573 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5723721 Sample Accession: GSM3733316 ID: 303733316 10138. ATAC-seq proximal femur E59 Organism: Homo sapiens Source name: Proximal femoral growth plates E59 Platform: GPL18573 Series: GSE122877 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3733nnn/GSM3733315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5723720 Sample Accession: GSM3733315 ID: 303733315 10139. ATAC-seq_Experiment 4 - Interferon-alpha condition (24h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355747 Sample Accession: GSM3902514 ID: 303902514 10140. ATAC-seq_Experiment 3 - Interferon-alpha condition (24h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355746 Sample Accession: GSM3902513 ID: 303902513 10141. ATAC-seq_Experiment 2 - Interferon-alpha condition (24h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355745 Sample Accession: GSM3902512 ID: 303902512 10142. ATAC-seq_Experiment 1 - Interferon-alpha condition (24h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355744 Sample Accession: GSM3902511 ID: 303902511 10143. ATAC-seq_Experiment 4 - Interferon-alpha condition (2h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355743 Sample Accession: GSM3902510 ID: 303902510 10144. ATAC-seq_Experiment 3 - Interferon-alpha condition (2h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355742 Sample Accession: GSM3902509 ID: 303902509 10145. ATAC-seq_Experiment 2 - Interferon-alpha condition (2h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355741 Sample Accession: GSM3902508 ID: 303902508 10146. ATAC-seq_Experiment 1 - Interferon-alpha condition (2h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355740 Sample Accession: GSM3902507 ID: 303902507 10147. ATAC-seq_Experiment 4 - control condition (24h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355739 Sample Accession: GSM3902506 ID: 303902506 10148. ATAC-seq_Experiment 3 - control condition (24h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355738 Sample Accession: GSM3902505 ID: 303902505 10149. ATAC-seq_Experiment 2 - control condition (24h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355737 Sample Accession: GSM3902504 ID: 303902504 10150. ATAC-seq_Experiment 1 - control condition (24h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355736 Sample Accession: GSM3902503 ID: 303902503 10151. ATAC-seq_Experiment 4 - control condition (2h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355735 Sample Accession: GSM3902502 ID: 303902502 10152. ATAC-seq_Experiment 3 - control condition (2h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355734 Sample Accession: GSM3902501 ID: 303902501 10153. ATAC-seq_Experiment 2 - control condition (2h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355733 Sample Accession: GSM3902500 ID: 303902500 10154. ATAC-seq_Experiment 1 - control condition (2h) Organism: Homo sapiens Source name: EndoC-BH1 cells Platform: GPL16791 Series: GSE133219 GSE133221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6355732 Sample Accession: GSM3902499 ID: 303902499 10155. Erythroid differentiation MPP3 ATAC-seq Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820185 Sample Accession: GSM4067207 ID: 304067207 10156. Erythroid differentiation MPP2 ATAC-seq Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820184 Sample Accession: GSM4067206 ID: 304067206 10157. Erythroid differentiation LMPP ATAC-seq Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820183 Sample Accession: GSM4067205 ID: 304067205 10158. Erythroid differentiation HSPC ATAC-seq Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820182 Sample Accession: GSM4067204 ID: 304067204 10159. Erythroid differentiation S3 ATAC-seq replicate 3.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820181 Sample Accession: GSM4067203 ID: 304067203 10160. Erythroid differentiation S3 ATAC-seq replicate 3.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820180 Sample Accession: GSM4067202 ID: 304067202 10161. Erythroid differentiation S2 ATAC-seq replicate 3.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820179 Sample Accession: GSM4067201 ID: 304067201 10162. Erythroid differentiation S2 ATAC-seq replicate 3.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820178 Sample Accession: GSM4067200 ID: 304067200 10163. Erythroid differentiation S1 ATAC-seq replicate 3.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820177 Sample Accession: GSM4067199 ID: 304067199 10164. Erythroid differentiation S1 ATAC-seq replicate 3.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820176 Sample Accession: GSM4067198 ID: 304067198 10165. Erythroid differentiation S0-medium ATAC-seq replicate 3.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820175 Sample Accession: GSM4067197 ID: 304067197 10166. Erythroid differentiation S0-medium ATAC-seq replicate 3.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820174 Sample Accession: GSM4067196 ID: 304067196 10167. Erythroid differentiation S0-low ATAC-seq replicate 3.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820173 Sample Accession: GSM4067195 ID: 304067195 10168. Erythroid differentiation S1 ATAC-seq replicate 1.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820172 Sample Accession: GSM4067194 ID: 304067194 10169. Erythroid differentiation S1 ATAC-seq replicate 1.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820171 Sample Accession: GSM4067193 ID: 304067193 10170. Erythroid differentiation S0-medium ATAC-seq replicate 1.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820170 Sample Accession: GSM4067192 ID: 304067192 10171. Erythroid differentiation S0-medium ATAC-seq replicate 1.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820169 Sample Accession: GSM4067191 ID: 304067191 10172. Erythroid differentiation S0-low ATAC-seq replicate 1.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820168 Sample Accession: GSM4067190 ID: 304067190 10173. Erythroid differentiation S0-low ATAC-seq replicate 1.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820167 Sample Accession: GSM4067189 ID: 304067189 10174. Erythroid differentiation S3 ATAC-seq replicate 2.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820166 Sample Accession: GSM4067188 ID: 304067188 10175. Erythroid differentiation S3 ATAC-seq replicate 2.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820165 Sample Accession: GSM4067187 ID: 304067187 10176. Erythroid differentiation S2 ATAC-seq replicate 2.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820164 Sample Accession: GSM4067186 ID: 304067186 10177. Erythroid differentiation S2 ATAC-seq replicate 2.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820163 Sample Accession: GSM4067185 ID: 304067185 10178. Erythroid differentiation S1 ATAC-seq replicate 2.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820162 Sample Accession: GSM4067184 ID: 304067184 10179. Erythroid differentiation S1 ATAC-seq replicate 2.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820161 Sample Accession: GSM4067183 ID: 304067183 10180. Erythroid differentiation S0-medium ATAC-seq replicate 2.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820160 Sample Accession: GSM4067182 ID: 304067182 10181. Erythroid differentiation S0-medium ATAC-seq replicate 2.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820159 Sample Accession: GSM4067181 ID: 304067181 10182. Erythroid differentiation S0-low ATAC-seq replicate 2.2 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820158 Sample Accession: GSM4067180 ID: 304067180 10183. Erythroid differentiation S0-low ATAC-seq replicate 2.1 Organism: Mus musculus Source name: Primary haematopoietic/erythroid progenitor cells Platform: GPL19057 Series: GSE137114 GSE137477 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6820157 Sample Accession: GSM4067179 ID: 304067179 10184. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_384 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282558 Sample Accession: GSM4209168 ID: 304209168 10185. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_383 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282557 Sample Accession: GSM4209167 ID: 304209167 10186. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_382 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282556 Sample Accession: GSM4209166 ID: 304209166 10187. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_381 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282555 Sample Accession: GSM4209165 ID: 304209165 10188. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_380 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282554 Sample Accession: GSM4209164 ID: 304209164 10189. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_379 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282553 Sample Accession: GSM4209163 ID: 304209163 10190. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_378 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282552 Sample Accession: GSM4209162 ID: 304209162 10191. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_377 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282551 Sample Accession: GSM4209161 ID: 304209161 10192. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_376 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282878 Sample Accession: GSM4209160 ID: 304209160 10193. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_375 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282877 Sample Accession: GSM4209159 ID: 304209159 10194. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_374 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282876 Sample Accession: GSM4209158 ID: 304209158 10195. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_373 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282875 Sample Accession: GSM4209157 ID: 304209157 10196. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_372 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282874 Sample Accession: GSM4209156 ID: 304209156 10197. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_371 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282873 Sample Accession: GSM4209155 ID: 304209155 10198. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_370 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282872 Sample Accession: GSM4209154 ID: 304209154 10199. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_369 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282871 Sample Accession: GSM4209153 ID: 304209153 10200. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_368 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282830 Sample Accession: GSM4209152 ID: 304209152 10201. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_367 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282829 Sample Accession: GSM4209151 ID: 304209151 10202. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_366 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282828 Sample Accession: GSM4209150 ID: 304209150 10203. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_365 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282827 Sample Accession: GSM4209149 ID: 304209149 10204. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_364 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282826 Sample Accession: GSM4209148 ID: 304209148 10205. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_363 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282825 Sample Accession: GSM4209147 ID: 304209147 10206. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_362 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282824 Sample Accession: GSM4209146 ID: 304209146 10207. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_361 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282823 Sample Accession: GSM4209145 ID: 304209145 10208. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_360 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282782 Sample Accession: GSM4209144 ID: 304209144 10209. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_359 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282781 Sample Accession: GSM4209143 ID: 304209143 10210. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_358 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282780 Sample Accession: GSM4209142 ID: 304209142 10211. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_357 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282779 Sample Accession: GSM4209141 ID: 304209141 10212. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_356 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282778 Sample Accession: GSM4209140 ID: 304209140 10213. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_355 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282777 Sample Accession: GSM4209139 ID: 304209139 10214. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_354 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282776 Sample Accession: GSM4209138 ID: 304209138 10215. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_353 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282775 Sample Accession: GSM4209137 ID: 304209137 10216. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_352 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282734 Sample Accession: GSM4209136 ID: 304209136 10217. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_351 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282733 Sample Accession: GSM4209135 ID: 304209135 10218. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_350 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282732 Sample Accession: GSM4209134 ID: 304209134 10219. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_349 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282731 Sample Accession: GSM4209133 ID: 304209133 10220. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_348 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282730 Sample Accession: GSM4209132 ID: 304209132 10221. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_347 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282729 Sample Accession: GSM4209131 ID: 304209131 10222. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_346 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282728 Sample Accession: GSM4209130 ID: 304209130 10223. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_345 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282727 Sample Accession: GSM4209129 ID: 304209129 10224. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_344 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282686 Sample Accession: GSM4209128 ID: 304209128 10225. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_343 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282685 Sample Accession: GSM4209127 ID: 304209127 10226. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_342 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282684 Sample Accession: GSM4209126 ID: 304209126 10227. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_341 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282683 Sample Accession: GSM4209125 ID: 304209125 10228. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_340 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282682 Sample Accession: GSM4209124 ID: 304209124 10229. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_339 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282681 Sample Accession: GSM4209123 ID: 304209123 10230. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_338 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282680 Sample Accession: GSM4209122 ID: 304209122 10231. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_337 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282679 Sample Accession: GSM4209121 ID: 304209121 10232. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_336 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282646 Sample Accession: GSM4209120 ID: 304209120 10233. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_335 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282645 Sample Accession: GSM4209119 ID: 304209119 10234. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_334 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282644 Sample Accession: GSM4209118 ID: 304209118 10235. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_333 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282643 Sample Accession: GSM4209117 ID: 304209117 10236. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_332 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282642 Sample Accession: GSM4209116 ID: 304209116 10237. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_331 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282641 Sample Accession: GSM4209115 ID: 304209115 10238. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_330 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282640 Sample Accession: GSM4209114 ID: 304209114 10239. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_329 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282639 Sample Accession: GSM4209113 ID: 304209113 10240. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_328 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282606 Sample Accession: GSM4209112 ID: 304209112 10241. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_327 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282605 Sample Accession: GSM4209111 ID: 304209111 10242. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_326 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282604 Sample Accession: GSM4209110 ID: 304209110 10243. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_325 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282603 Sample Accession: GSM4209109 ID: 304209109 10244. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_324 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282602 Sample Accession: GSM4209108 ID: 304209108 10245. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_323 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282601 Sample Accession: GSM4209107 ID: 304209107 10246. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_322 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282600 Sample Accession: GSM4209106 ID: 304209106 10247. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_321 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282599 Sample Accession: GSM4209105 ID: 304209105 10248. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_320 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282550 Sample Accession: GSM4209104 ID: 304209104 10249. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_319 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282549 Sample Accession: GSM4209103 ID: 304209103 10250. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_318 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282548 Sample Accession: GSM4209102 ID: 304209102 10251. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_317 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282547 Sample Accession: GSM4209101 ID: 304209101 10252. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_316 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282546 Sample Accession: GSM4209100 ID: 304209100 10253. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_315 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282545 Sample Accession: GSM4209099 ID: 304209099 10254. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_314 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282544 Sample Accession: GSM4209098 ID: 304209098 10255. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_313 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282543 Sample Accession: GSM4209097 ID: 304209097 10256. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_312 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282870 Sample Accession: GSM4209096 ID: 304209096 10257. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_311 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282869 Sample Accession: GSM4209095 ID: 304209095 10258. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_310 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282868 Sample Accession: GSM4209094 ID: 304209094 10259. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_309 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282867 Sample Accession: GSM4209093 ID: 304209093 10260. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_308 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282866 Sample Accession: GSM4209092 ID: 304209092 10261. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_307 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282865 Sample Accession: GSM4209091 ID: 304209091 10262. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_306 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282864 Sample Accession: GSM4209090 ID: 304209090 10263. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_305 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282863 Sample Accession: GSM4209089 ID: 304209089 10264. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_304 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282822 Sample Accession: GSM4209088 ID: 304209088 10265. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_303 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282821 Sample Accession: GSM4209087 ID: 304209087 10266. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_302 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282820 Sample Accession: GSM4209086 ID: 304209086 10267. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_301 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282819 Sample Accession: GSM4209085 ID: 304209085 10268. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_300 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282818 Sample Accession: GSM4209084 ID: 304209084 10269. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_299 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282817 Sample Accession: GSM4209083 ID: 304209083 10270. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_298 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282816 Sample Accession: GSM4209082 ID: 304209082 10271. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_297 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282815 Sample Accession: GSM4209081 ID: 304209081 10272. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_296 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282774 Sample Accession: GSM4209080 ID: 304209080 10273. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_295 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282773 Sample Accession: GSM4209079 ID: 304209079 10274. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_294 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282772 Sample Accession: GSM4209078 ID: 304209078 10275. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_293 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282771 Sample Accession: GSM4209077 ID: 304209077 10276. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_292 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282770 Sample Accession: GSM4209076 ID: 304209076 10277. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_291 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282769 Sample Accession: GSM4209075 ID: 304209075 10278. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_290 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282768 Sample Accession: GSM4209074 ID: 304209074 10279. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_289 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282767 Sample Accession: GSM4209073 ID: 304209073 10280. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_288 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282726 Sample Accession: GSM4209072 ID: 304209072 10281. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_287 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282725 Sample Accession: GSM4209071 ID: 304209071 10282. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_286 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282724 Sample Accession: GSM4209070 ID: 304209070 10283. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_285 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282723 Sample Accession: GSM4209069 ID: 304209069 10284. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_284 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282722 Sample Accession: GSM4209068 ID: 304209068 10285. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_283 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282721 Sample Accession: GSM4209067 ID: 304209067 10286. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_282 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282720 Sample Accession: GSM4209066 ID: 304209066 10287. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_281 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282719 Sample Accession: GSM4209065 ID: 304209065 10288. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_280 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282678 Sample Accession: GSM4209064 ID: 304209064 10289. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_279 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282677 Sample Accession: GSM4209063 ID: 304209063 10290. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_278 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282676 Sample Accession: GSM4209062 ID: 304209062 10291. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_277 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282675 Sample Accession: GSM4209061 ID: 304209061 10292. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_276 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282674 Sample Accession: GSM4209060 ID: 304209060 10293. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_275 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282673 Sample Accession: GSM4209059 ID: 304209059 10294. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_274 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282672 Sample Accession: GSM4209058 ID: 304209058 10295. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_273 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282671 Sample Accession: GSM4209057 ID: 304209057 10296. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_272 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282638 Sample Accession: GSM4209056 ID: 304209056 10297. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_271 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282637 Sample Accession: GSM4209055 ID: 304209055 10298. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_270 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282636 Sample Accession: GSM4209054 ID: 304209054 10299. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_269 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282635 Sample Accession: GSM4209053 ID: 304209053 10300. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_268 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282634 Sample Accession: GSM4209052 ID: 304209052 10301. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_267 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282633 Sample Accession: GSM4209051 ID: 304209051 10302. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_266 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282632 Sample Accession: GSM4209050 ID: 304209050 10303. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_265 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282631 Sample Accession: GSM4209049 ID: 304209049 10304. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_264 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282598 Sample Accession: GSM4209048 ID: 304209048 10305. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_263 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282597 Sample Accession: GSM4209047 ID: 304209047 10306. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_262 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282596 Sample Accession: GSM4209046 ID: 304209046 10307. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_261 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282595 Sample Accession: GSM4209045 ID: 304209045 10308. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_260 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282594 Sample Accession: GSM4209044 ID: 304209044 10309. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_259 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282593 Sample Accession: GSM4209043 ID: 304209043 10310. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_258 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282592 Sample Accession: GSM4209042 ID: 304209042 10311. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_257 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282591 Sample Accession: GSM4209041 ID: 304209041 10312. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_256 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282542 Sample Accession: GSM4209040 ID: 304209040 10313. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_255 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282541 Sample Accession: GSM4209039 ID: 304209039 10314. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_254 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282540 Sample Accession: GSM4209038 ID: 304209038 10315. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_253 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282539 Sample Accession: GSM4209037 ID: 304209037 10316. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_252 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282538 Sample Accession: GSM4209036 ID: 304209036 10317. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_251 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282537 Sample Accession: GSM4209035 ID: 304209035 10318. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_250 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282536 Sample Accession: GSM4209034 ID: 304209034 10319. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_249 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282535 Sample Accession: GSM4209033 ID: 304209033 10320. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_248 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282862 Sample Accession: GSM4209032 ID: 304209032 10321. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_247 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282861 Sample Accession: GSM4209031 ID: 304209031 10322. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_246 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282860 Sample Accession: GSM4209030 ID: 304209030 10323. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_245 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282859 Sample Accession: GSM4209029 ID: 304209029 10324. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_244 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282858 Sample Accession: GSM4209028 ID: 304209028 10325. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_243 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282857 Sample Accession: GSM4209027 ID: 304209027 10326. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_242 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282856 Sample Accession: GSM4209026 ID: 304209026 10327. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_241 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282855 Sample Accession: GSM4209025 ID: 304209025 10328. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_240 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282814 Sample Accession: GSM4209024 ID: 304209024 10329. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_239 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282813 Sample Accession: GSM4209023 ID: 304209023 10330. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_238 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282812 Sample Accession: GSM4209022 ID: 304209022 10331. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_237 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282811 Sample Accession: GSM4209021 ID: 304209021 10332. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_236 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282810 Sample Accession: GSM4209020 ID: 304209020 10333. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_235 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282809 Sample Accession: GSM4209019 ID: 304209019 10334. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_234 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282808 Sample Accession: GSM4209018 ID: 304209018 10335. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_233 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282807 Sample Accession: GSM4209017 ID: 304209017 10336. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_232 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282766 Sample Accession: GSM4209016 ID: 304209016 10337. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_231 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282765 Sample Accession: GSM4209015 ID: 304209015 10338. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_230 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282764 Sample Accession: GSM4209014 ID: 304209014 10339. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_229 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282763 Sample Accession: GSM4209013 ID: 304209013 10340. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_228 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282762 Sample Accession: GSM4209012 ID: 304209012 10341. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_227 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282761 Sample Accession: GSM4209011 ID: 304209011 10342. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_226 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282760 Sample Accession: GSM4209010 ID: 304209010 10343. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_225 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282759 Sample Accession: GSM4209009 ID: 304209009 10344. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_224 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282718 Sample Accession: GSM4209008 ID: 304209008 10345. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_223 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282717 Sample Accession: GSM4209007 ID: 304209007 10346. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_222 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282716 Sample Accession: GSM4209006 ID: 304209006 10347. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_221 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282715 Sample Accession: GSM4209005 ID: 304209005 10348. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_220 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282714 Sample Accession: GSM4209004 ID: 304209004 10349. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_219 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282713 Sample Accession: GSM4209003 ID: 304209003 10350. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_218 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282712 Sample Accession: GSM4209002 ID: 304209002 10351. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_217 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282711 Sample Accession: GSM4209001 ID: 304209001 10352. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_216 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282670 Sample Accession: GSM4209000 ID: 304209000 10353. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_215 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282669 Sample Accession: GSM4208999 ID: 304208999 10354. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_214 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282668 Sample Accession: GSM4208998 ID: 304208998 10355. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_213 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282667 Sample Accession: GSM4208997 ID: 304208997 10356. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_212 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282666 Sample Accession: GSM4208996 ID: 304208996 10357. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_211 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282665 Sample Accession: GSM4208995 ID: 304208995 10358. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_210 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282664 Sample Accession: GSM4208994 ID: 304208994 10359. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_209 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282663 Sample Accession: GSM4208993 ID: 304208993 10360. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_208 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282630 Sample Accession: GSM4208992 ID: 304208992 10361. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_207 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282629 Sample Accession: GSM4208991 ID: 304208991 10362. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_206 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282628 Sample Accession: GSM4208990 ID: 304208990 10363. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_205 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282627 Sample Accession: GSM4208989 ID: 304208989 10364. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_204 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282626 Sample Accession: GSM4208988 ID: 304208988 10365. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_203 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282625 Sample Accession: GSM4208987 ID: 304208987 10366. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_202 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282624 Sample Accession: GSM4208986 ID: 304208986 10367. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_201 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282623 Sample Accession: GSM4208985 ID: 304208985 10368. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_200 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282590 Sample Accession: GSM4208984 ID: 304208984 10369. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_199 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282589 Sample Accession: GSM4208983 ID: 304208983 10370. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_198 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282588 Sample Accession: GSM4208982 ID: 304208982 10371. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_197 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282587 Sample Accession: GSM4208981 ID: 304208981 10372. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_196 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282586 Sample Accession: GSM4208980 ID: 304208980 10373. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_195 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282585 Sample Accession: GSM4208979 ID: 304208979 10374. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_194 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282584 Sample Accession: GSM4208978 ID: 304208978 10375. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_193 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282583 Sample Accession: GSM4208977 ID: 304208977 10376. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_192 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282534 Sample Accession: GSM4208976 ID: 304208976 10377. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_191 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282533 Sample Accession: GSM4208975 ID: 304208975 10378. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_190 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282532 Sample Accession: GSM4208974 ID: 304208974 10379. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_189 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282531 Sample Accession: GSM4208973 ID: 304208973 10380. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_188 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282530 Sample Accession: GSM4208972 ID: 304208972 10381. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_187 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282529 Sample Accession: GSM4208971 ID: 304208971 10382. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_186 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282528 Sample Accession: GSM4208970 ID: 304208970 10383. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_185 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282527 Sample Accession: GSM4208969 ID: 304208969 10384. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_184 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282854 Sample Accession: GSM4208968 ID: 304208968 10385. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_183 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282853 Sample Accession: GSM4208967 ID: 304208967 10386. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_182 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282852 Sample Accession: GSM4208966 ID: 304208966 10387. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_181 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282851 Sample Accession: GSM4208965 ID: 304208965 10388. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_180 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282850 Sample Accession: GSM4208964 ID: 304208964 10389. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_179 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282849 Sample Accession: GSM4208963 ID: 304208963 10390. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_178 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282848 Sample Accession: GSM4208962 ID: 304208962 10391. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_177 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282847 Sample Accession: GSM4208961 ID: 304208961 10392. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_176 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282806 Sample Accession: GSM4208960 ID: 304208960 10393. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_175 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282805 Sample Accession: GSM4208959 ID: 304208959 10394. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_174 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282804 Sample Accession: GSM4208958 ID: 304208958 10395. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_173 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282803 Sample Accession: GSM4208957 ID: 304208957 10396. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_172 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282802 Sample Accession: GSM4208956 ID: 304208956 10397. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_171 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282801 Sample Accession: GSM4208955 ID: 304208955 10398. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_170 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282800 Sample Accession: GSM4208954 ID: 304208954 10399. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_169 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282799 Sample Accession: GSM4208953 ID: 304208953 10400. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_168 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282758 Sample Accession: GSM4208952 ID: 304208952 10401. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_167 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282757 Sample Accession: GSM4208951 ID: 304208951 10402. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_166 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282756 Sample Accession: GSM4208950 ID: 304208950 10403. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_165 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282755 Sample Accession: GSM4208949 ID: 304208949 10404. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_164 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282754 Sample Accession: GSM4208948 ID: 304208948 10405. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_163 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282753 Sample Accession: GSM4208947 ID: 304208947 10406. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_162 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282752 Sample Accession: GSM4208946 ID: 304208946 10407. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_161 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282751 Sample Accession: GSM4208945 ID: 304208945 10408. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_160 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282710 Sample Accession: GSM4208944 ID: 304208944 10409. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_159 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282709 Sample Accession: GSM4208943 ID: 304208943 10410. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_158 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282708 Sample Accession: GSM4208942 ID: 304208942 10411. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_157 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282707 Sample Accession: GSM4208941 ID: 304208941 10412. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_156 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282706 Sample Accession: GSM4208940 ID: 304208940 10413. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_155 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282705 Sample Accession: GSM4208939 ID: 304208939 10414. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_154 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282704 Sample Accession: GSM4208938 ID: 304208938 10415. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_153 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282703 Sample Accession: GSM4208937 ID: 304208937 10416. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_152 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282662 Sample Accession: GSM4208936 ID: 304208936 10417. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_151 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282661 Sample Accession: GSM4208935 ID: 304208935 10418. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_150 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282660 Sample Accession: GSM4208934 ID: 304208934 10419. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_149 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282659 Sample Accession: GSM4208933 ID: 304208933 10420. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_148 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282658 Sample Accession: GSM4208932 ID: 304208932 10421. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_147 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282657 Sample Accession: GSM4208931 ID: 304208931 10422. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_146 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282656 Sample Accession: GSM4208930 ID: 304208930 10423. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_145 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282655 Sample Accession: GSM4208929 ID: 304208929 10424. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_144 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282622 Sample Accession: GSM4208928 ID: 304208928 10425. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_143 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282621 Sample Accession: GSM4208927 ID: 304208927 10426. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_142 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282620 Sample Accession: GSM4208926 ID: 304208926 10427. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_141 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282619 Sample Accession: GSM4208925 ID: 304208925 10428. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_140 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282618 Sample Accession: GSM4208924 ID: 304208924 10429. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_139 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282617 Sample Accession: GSM4208923 ID: 304208923 10430. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_138 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282616 Sample Accession: GSM4208922 ID: 304208922 10431. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_137 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282615 Sample Accession: GSM4208921 ID: 304208921 10432. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_136 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282582 Sample Accession: GSM4208920 ID: 304208920 10433. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_135 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282581 Sample Accession: GSM4208919 ID: 304208919 10434. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_134 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282580 Sample Accession: GSM4208918 ID: 304208918 10435. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_133 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282579 Sample Accession: GSM4208917 ID: 304208917 10436. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_132 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282578 Sample Accession: GSM4208916 ID: 304208916 10437. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_131 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282577 Sample Accession: GSM4208915 ID: 304208915 10438. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_130 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282576 Sample Accession: GSM4208914 ID: 304208914 10439. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_129 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282575 Sample Accession: GSM4208913 ID: 304208913 10440. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_128 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282526 Sample Accession: GSM4208912 ID: 304208912 10441. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_127 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282525 Sample Accession: GSM4208911 ID: 304208911 10442. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_126 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282524 Sample Accession: GSM4208910 ID: 304208910 10443. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_125 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282523 Sample Accession: GSM4208909 ID: 304208909 10444. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_124 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282522 Sample Accession: GSM4208908 ID: 304208908 10445. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_123 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282521 Sample Accession: GSM4208907 ID: 304208907 10446. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_122 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282520 Sample Accession: GSM4208906 ID: 304208906 10447. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_121 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282519 Sample Accession: GSM4208905 ID: 304208905 10448. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_120 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282894 Sample Accession: GSM4208904 ID: 304208904 10449. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_119 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282893 Sample Accession: GSM4208903 ID: 304208903 10450. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_118 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282892 Sample Accession: GSM4208902 ID: 304208902 10451. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_117 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282891 Sample Accession: GSM4208901 ID: 304208901 10452. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_116 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282890 Sample Accession: GSM4208900 ID: 304208900 10453. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_115 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282889 Sample Accession: GSM4208899 ID: 304208899 10454. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_114 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282888 Sample Accession: GSM4208898 ID: 304208898 10455. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_113 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282887 Sample Accession: GSM4208897 ID: 304208897 10456. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_112 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282846 Sample Accession: GSM4208896 ID: 304208896 10457. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_111 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282845 Sample Accession: GSM4208895 ID: 304208895 10458. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_110 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282844 Sample Accession: GSM4208894 ID: 304208894 10459. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_109 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282843 Sample Accession: GSM4208893 ID: 304208893 10460. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_108 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282842 Sample Accession: GSM4208892 ID: 304208892 10461. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_107 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282841 Sample Accession: GSM4208891 ID: 304208891 10462. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_106 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282840 Sample Accession: GSM4208890 ID: 304208890 10463. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_105 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282839 Sample Accession: GSM4208889 ID: 304208889 10464. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_104 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282798 Sample Accession: GSM4208888 ID: 304208888 10465. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_103 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282797 Sample Accession: GSM4208887 ID: 304208887 10466. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_102 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282796 Sample Accession: GSM4208886 ID: 304208886 10467. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_101 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282795 Sample Accession: GSM4208885 ID: 304208885 10468. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_100 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282794 Sample Accession: GSM4208884 ID: 304208884 10469. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_99 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282793 Sample Accession: GSM4208883 ID: 304208883 10470. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_98 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282792 Sample Accession: GSM4208882 ID: 304208882 10471. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_97 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282791 Sample Accession: GSM4208881 ID: 304208881 10472. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_96 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282750 Sample Accession: GSM4208880 ID: 304208880 10473. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_95 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282749 Sample Accession: GSM4208879 ID: 304208879 10474. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_94 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282748 Sample Accession: GSM4208878 ID: 304208878 10475. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_93 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282747 Sample Accession: GSM4208877 ID: 304208877 10476. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_92 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282746 Sample Accession: GSM4208876 ID: 304208876 10477. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_91 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282745 Sample Accession: GSM4208875 ID: 304208875 10478. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_90 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282744 Sample Accession: GSM4208874 ID: 304208874 10479. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_89 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282743 Sample Accession: GSM4208873 ID: 304208873 10480. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_88 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282702 Sample Accession: GSM4208872 ID: 304208872 10481. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_87 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282701 Sample Accession: GSM4208871 ID: 304208871 10482. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_86 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282700 Sample Accession: GSM4208870 ID: 304208870 10483. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_85 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282699 Sample Accession: GSM4208869 ID: 304208869 10484. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_84 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282698 Sample Accession: GSM4208868 ID: 304208868 10485. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_83 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282697 Sample Accession: GSM4208867 ID: 304208867 10486. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_82 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282696 Sample Accession: GSM4208866 ID: 304208866 10487. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_81 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282695 Sample Accession: GSM4208865 ID: 304208865 10488. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_80 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282654 Sample Accession: GSM4208864 ID: 304208864 10489. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_79 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282653 Sample Accession: GSM4208863 ID: 304208863 10490. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_78 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282652 Sample Accession: GSM4208862 ID: 304208862 10491. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_77 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282651 Sample Accession: GSM4208861 ID: 304208861 10492. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_76 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282650 Sample Accession: GSM4208860 ID: 304208860 10493. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_75 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282649 Sample Accession: GSM4208859 ID: 304208859 10494. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_74 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282648 Sample Accession: GSM4208858 ID: 304208858 10495. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_73 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282647 Sample Accession: GSM4208857 ID: 304208857 10496. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_72 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282614 Sample Accession: GSM4208856 ID: 304208856 10497. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_71 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282613 Sample Accession: GSM4208855 ID: 304208855 10498. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_70 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282612 Sample Accession: GSM4208854 ID: 304208854 10499. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_69 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282611 Sample Accession: GSM4208853 ID: 304208853 10500. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_68 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282610 Sample Accession: GSM4208852 ID: 304208852 10501. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_67 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282609 Sample Accession: GSM4208851 ID: 304208851 10502. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_66 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282608 Sample Accession: GSM4208850 ID: 304208850 10503. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_65 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282607 Sample Accession: GSM4208849 ID: 304208849 10504. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_64 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282574 Sample Accession: GSM4208848 ID: 304208848 10505. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_63 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282573 Sample Accession: GSM4208847 ID: 304208847 10506. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_62 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282572 Sample Accession: GSM4208846 ID: 304208846 10507. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_61 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282571 Sample Accession: GSM4208845 ID: 304208845 10508. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_60 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282570 Sample Accession: GSM4208844 ID: 304208844 10509. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_59 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282569 Sample Accession: GSM4208843 ID: 304208843 10510. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_58 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282568 Sample Accession: GSM4208842 ID: 304208842 10511. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_57 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282567 Sample Accession: GSM4208841 ID: 304208841 10512. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_56 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282518 Sample Accession: GSM4208840 ID: 304208840 10513. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_55 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282517 Sample Accession: GSM4208839 ID: 304208839 10514. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_54 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282516 Sample Accession: GSM4208838 ID: 304208838 10515. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_53 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282515 Sample Accession: GSM4208837 ID: 304208837 10516. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_52 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282514 Sample Accession: GSM4208836 ID: 304208836 10517. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_51 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282513 Sample Accession: GSM4208835 ID: 304208835 10518. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_50 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282512 Sample Accession: GSM4208834 ID: 304208834 10519. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_49 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282511 Sample Accession: GSM4208833 ID: 304208833 10520. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_48 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282886 Sample Accession: GSM4208832 ID: 304208832 10521. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_47 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282885 Sample Accession: GSM4208831 ID: 304208831 10522. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_46 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282884 Sample Accession: GSM4208830 ID: 304208830 10523. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_45 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282883 Sample Accession: GSM4208829 ID: 304208829 10524. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_44 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282882 Sample Accession: GSM4208828 ID: 304208828 10525. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_43 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282881 Sample Accession: GSM4208827 ID: 304208827 10526. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_42 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282880 Sample Accession: GSM4208826 ID: 304208826 10527. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_41 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282879 Sample Accession: GSM4208825 ID: 304208825 10528. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_40 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282838 Sample Accession: GSM4208824 ID: 304208824 10529. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_39 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282837 Sample Accession: GSM4208823 ID: 304208823 10530. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_38 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282836 Sample Accession: GSM4208822 ID: 304208822 10531. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_37 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282835 Sample Accession: GSM4208821 ID: 304208821 10532. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_36 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282834 Sample Accession: GSM4208820 ID: 304208820 10533. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_35 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282833 Sample Accession: GSM4208819 ID: 304208819 10534. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_34 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282832 Sample Accession: GSM4208818 ID: 304208818 10535. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_33 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282831 Sample Accession: GSM4208817 ID: 304208817 10536. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_32 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282790 Sample Accession: GSM4208816 ID: 304208816 10537. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_31 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282789 Sample Accession: GSM4208815 ID: 304208815 10538. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_30 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282788 Sample Accession: GSM4208814 ID: 304208814 10539. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_29 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282787 Sample Accession: GSM4208813 ID: 304208813 10540. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_28 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282786 Sample Accession: GSM4208812 ID: 304208812 10541. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_27 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282785 Sample Accession: GSM4208811 ID: 304208811 10542. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_26 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282784 Sample Accession: GSM4208810 ID: 304208810 10543. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_25 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282783 Sample Accession: GSM4208809 ID: 304208809 10544. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_24 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282742 Sample Accession: GSM4208808 ID: 304208808 10545. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_23 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282741 Sample Accession: GSM4208807 ID: 304208807 10546. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_22 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282740 Sample Accession: GSM4208806 ID: 304208806 10547. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_21 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282739 Sample Accession: GSM4208805 ID: 304208805 10548. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_20 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282738 Sample Accession: GSM4208804 ID: 304208804 10549. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_19 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282737 Sample Accession: GSM4208803 ID: 304208803 10550. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_18 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282736 Sample Accession: GSM4208802 ID: 304208802 10551. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_17 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282735 Sample Accession: GSM4208801 ID: 304208801 10552. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_16 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282694 Sample Accession: GSM4208800 ID: 304208800 10553. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_15 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282693 Sample Accession: GSM4208799 ID: 304208799 10554. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_14 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282692 Sample Accession: GSM4208798 ID: 304208798 10555. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_13 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282691 Sample Accession: GSM4208797 ID: 304208797 10556. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_12 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282690 Sample Accession: GSM4208796 ID: 304208796 10557. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_11 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282689 Sample Accession: GSM4208795 ID: 304208795 10558. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_10 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282688 Sample Accession: GSM4208794 ID: 304208794 10559. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_9 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282687 Sample Accession: GSM4208793 ID: 304208793 10560. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_8 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282566 Sample Accession: GSM4208792 ID: 304208792 10561. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_7 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282565 Sample Accession: GSM4208791 ID: 304208791 10562. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_6 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282564 Sample Accession: GSM4208790 ID: 304208790 10563. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_5 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282563 Sample Accession: GSM4208789 ID: 304208789 10564. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_4 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282562 Sample Accession: GSM4208788 ID: 304208788 10565. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_3 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282561 Sample Accession: GSM4208787 ID: 304208787 10566. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_2 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282560 Sample Accession: GSM4208786 ID: 304208786 10567. FLUIDIGMC1_SCATACSEQ_SENS-GFP_CELL_1 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141580 GSE141590 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7282559 Sample Accession: GSM4208785 ID: 304208785 10568. DGRP-55030 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281014 Sample Accession: GSM4207289 ID: 304207289 10569. DGRP-55028 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281013 Sample Accession: GSM4207288 ID: 304207288 10570. DGRP-55018 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281012 Sample Accession: GSM4207287 ID: 304207287 10571. DGRP-55015 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281011 Sample Accession: GSM4207286 ID: 304207286 10572. DGRP-29658 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281010 Sample Accession: GSM4207285 ID: 304207285 10573. DGRP-29652 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281009 Sample Accession: GSM4207284 ID: 304207284 10574. DGRP-28250 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281008 Sample Accession: GSM4207283 ID: 304207283 10575. DGRP-28239 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281007 Sample Accession: GSM4207282 ID: 304207282 10576. DGRP-28238 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281006 Sample Accession: GSM4207281 ID: 304207281 10577. DGRP-28235 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281005 Sample Accession: GSM4207280 ID: 304207280 10578. DGRP-28233 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281004 Sample Accession: GSM4207279 ID: 304207279 10579. DGRP-28229 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281030 Sample Accession: GSM4207278 ID: 304207278 10580. DGRP-28212 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281029 Sample Accession: GSM4207277 ID: 304207277 10581. DGRP-28198 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281028 Sample Accession: GSM4207276 ID: 304207276 10582. DGRP-28194 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281027 Sample Accession: GSM4207275 ID: 304207275 10583. DGRP-28189 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281026 Sample Accession: GSM4207274 ID: 304207274 10584. DGRP-28185 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281025 Sample Accession: GSM4207273 ID: 304207273 10585. DGRP-28177 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281024 Sample Accession: GSM4207272 ID: 304207272 10586. DGRP-28176 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281023 Sample Accession: GSM4207271 ID: 304207271 10587. DGRP-28141 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281022 Sample Accession: GSM4207270 ID: 304207270 10588. DGRP-28140 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281021 Sample Accession: GSM4207269 ID: 304207269 10589. DGRP-28138 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281020 Sample Accession: GSM4207268 ID: 304207268 10590. DGRP-28136 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281019 Sample Accession: GSM4207267 ID: 304207267 10591. DGRP-28129 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281018 Sample Accession: GSM4207266 ID: 304207266 10592. DGRP-25201 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281017 Sample Accession: GSM4207265 ID: 304207265 10593. DGRP-25198 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281016 Sample Accession: GSM4207264 ID: 304207264 10594. DGRP-25194 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281015 Sample Accession: GSM4207263 ID: 304207263 10595. DGRP-25191 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281003 Sample Accession: GSM4207262 ID: 304207262 10596. DGRP-25189 Organism: Drosophila melanogaster Source name: L3 Drosophila eye-antennal disc Platform: GPL19132 Series: GSE141573 GSE141590 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4207nnn/GSM4207261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7281002 Sample Accession: GSM4207261 ID: 304207261 10597. Tet2KO RP ATAC-seq 2 Organism: Mus musculus Source name: Restricted Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099306 Sample Accession: GSM4148660 ID: 304148660 10598. Tet2KO RP ATAC-seq 1 Organism: Mus musculus Source name: Restricted Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099305 Sample Accession: GSM4148659 ID: 304148659 10599. Tet2KO MPP ATAC-seq 2 Organism: Mus musculus Source name: Multipotent Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099304 Sample Accession: GSM4148658 ID: 304148658 10600. Tet2KO MPP ATAC-seq 1 Organism: Mus musculus Source name: Multipotent Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099303 Sample Accession: GSM4148657 ID: 304148657 10601. Tet2KO HSC ATAC-seq 2 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099302 Sample Accession: GSM4148656 ID: 304148656 10602. Tet2KO HSC ATAC-seq 1 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099301 Sample Accession: GSM4148655 ID: 304148655 10603. Dnmt3aKO RP ATAC-seq 2 Organism: Mus musculus Source name: Restricted Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099300 Sample Accession: GSM4148654 ID: 304148654 10604. Dnmt3aKO RP ATAC-seq 1 Organism: Mus musculus Source name: Restricted Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099299 Sample Accession: GSM4148653 ID: 304148653 10605. Dnmt3aKO MPP ATAC-seq 2 Organism: Mus musculus Source name: Multipotent Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099298 Sample Accession: GSM4148652 ID: 304148652 10606. Dnmt3aKO MPP ATAC-seq 1 Organism: Mus musculus Source name: Multipotent Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099297 Sample Accession: GSM4148651 ID: 304148651 10607. Dnmt3aKO HSC ATAC-seq 2 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099296 Sample Accession: GSM4148650 ID: 304148650 10608. Dnmt3aKO HSC ATAC-seq 1 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099295 Sample Accession: GSM4148649 ID: 304148649 10609. Control RP ATAC-seq 2 Organism: Mus musculus Source name: Restricted Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099294 Sample Accession: GSM4148648 ID: 304148648 10610. Control RP ATAC-seq 1 Organism: Mus musculus Source name: Restricted Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099293 Sample Accession: GSM4148647 ID: 304148647 10611. Control MPP ATAC-seq 2 Organism: Mus musculus Source name: Multipotent Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099292 Sample Accession: GSM4148646 ID: 304148646 10612. Control MPP ATAC-seq 1 Organism: Mus musculus Source name: Multipotent Progenitor Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099291 Sample Accession: GSM4148645 ID: 304148645 10613. Control HSC ATAC-seq 2 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099290 Sample Accession: GSM4148644 ID: 304148644 10614. Control HSC ATAC-seq 1 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL24247 Series: GSE139911 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4148nnn/GSM4148643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7099289 Sample Accession: GSM4148643 ID: 304148643 10615. TH17(β) ATAC-seq rep2 Organism: Mus musculus Source name: Nonpathogenic TH17 cells Platform: GPL21273 Series: GSE127768 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3638nnn/GSM3638391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5459422 Sample Accession: GSM3638391 ID: 303638391 10616. TH17(β) ATAC-seq rep1 Organism: Mus musculus Source name: Nonpathogenic TH17 cells Platform: GPL21273 Series: GSE127768 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3638nnn/GSM3638390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5459421 Sample Accession: GSM3638390 ID: 303638390 10617. TH17(23) ATAC-seq rep2 Organism: Mus musculus Source name: Pathogenic TH17 cells Platform: GPL21273 Series: GSE127768 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3638nnn/GSM3638389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5459420 Sample Accession: GSM3638389 ID: 303638389 10618. TH17(23) ATAC-seq rep1 Organism: Mus musculus Source name: Pathogenic TH17 cells Platform: GPL21273 Series: GSE127768 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3638nnn/GSM3638388/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5459419 Sample Accession: GSM3638388 ID: 303638388 10619. Ileum TH17 ATAC-seq rep2 Organism: Mus musculus Source name: Ileum TH17 cells Platform: GPL21273 Series: GSE127768 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3638nnn/GSM3638387/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5459418 Sample Accession: GSM3638387 ID: 303638387 10620. Ileum TH17 ATAC-seq rep1 Organism: Mus musculus Source name: Ileum TH17 cells Platform: GPL21273 Series: GSE127768 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3638nnn/GSM3638386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5459417 Sample Accession: GSM3638386 ID: 303638386 10621. CNS TH17 ATAC-seq rep2 Organism: Mus musculus Source name: CNS-infiltrated TH17 cells Platform: GPL21273 Series: GSE127768 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3638nnn/GSM3638385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5459416 Sample Accession: GSM3638385 ID: 303638385 10622. CNS TH17 ATAC-seq rep1 Organism: Mus musculus Source name: CNS-infiltrated TH17 cells Platform: GPL21273 Series: GSE127768 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3638nnn/GSM3638384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5459415 Sample Accession: GSM3638384 ID: 303638384 10623. ATAC-seq_TSA_30'_rep2 Organism: Drosophila melanogaster Source name: S2 cells Platform: GPL22106 Series: GSE141871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4215nnn/GSM4215247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7351030 Sample Accession: GSM4215247 ID: 304215247 10624. ATAC-seq_TSA_30'_rep1 Organism: Drosophila melanogaster Source name: S2 cells Platform: GPL22106 Series: GSE141871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4215nnn/GSM4215246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7351029 Sample Accession: GSM4215246 ID: 304215246 10625. ATAC-seq_TSA_10'_rep2 Organism: Drosophila melanogaster Source name: S2 cells Platform: GPL22106 Series: GSE141871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4215nnn/GSM4215245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7351028 Sample Accession: GSM4215245 ID: 304215245 10626. ATAC-seq_TSA_10'_rep1 Organism: Drosophila melanogaster Source name: S2 cells Platform: GPL22106 Series: GSE141871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4215nnn/GSM4215244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7351027 Sample Accession: GSM4215244 ID: 304215244 10627. ATAC-seq_DMSO 10'_rep2 Organism: Drosophila melanogaster Source name: S2 cells Platform: GPL22106 Series: GSE141871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4215nnn/GSM4215243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7351026 Sample Accession: GSM4215243 ID: 304215243 10628. ATAC-seq_DMSO_10'_rep1 Organism: Drosophila melanogaster Source name: S2 cells Platform: GPL22106 Series: GSE141871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4215nnn/GSM4215242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7351025 Sample Accession: GSM4215242 ID: 304215242 10629. shCHD1-XE-1_3 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-XE-1_3 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437826 Sample Accession: GSM3632991 ID: 303632991 10630. shCHD1-XE-1_2 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-XE-1_2 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437825 Sample Accession: GSM3632990 ID: 303632990 10631. shCHD1-XE-1_1 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-XE-1_1 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437824 Sample Accession: GSM3632989 ID: 303632989 10632. shCHD1-XE-2_3 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-XE-2_3 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437823 Sample Accession: GSM3632988 ID: 303632988 10633. shCHD1-XE-2_2 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-XE-2_2 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437822 Sample Accession: GSM3632987 ID: 303632987 10634. shCHD1-XE-2_1 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-XE-2_1 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437821 Sample Accession: GSM3632986 ID: 303632986 10635. shNT_3 (ATAC-seq) Organism: Homo sapiens Source name: shNT_3 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437820 Sample Accession: GSM3632985 ID: 303632985 10636. shNT_2 (ATAC-seq) Organism: Homo sapiens Source name: shNT_2 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437819 Sample Accession: GSM3632984 ID: 303632984 10637. shNT_1 (ATAC-seq) Organism: Homo sapiens Source name: shNT_1 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437818 Sample Accession: GSM3632983 ID: 303632983 10638. shCHD1-1_3 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-1_3 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437817 Sample Accession: GSM3632982 ID: 303632982 10639. shCHD1-1_2 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-1_2 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437816 Sample Accession: GSM3632981 ID: 303632981 10640. shCHD1-1_1 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-1_1 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437815 Sample Accession: GSM3632980 ID: 303632980 10641. shCHD1-2_3 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-2_3 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437814 Sample Accession: GSM3632979 ID: 303632979 10642. shCHD1-2_2 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-2_2 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437813 Sample Accession: GSM3632978 ID: 303632978 10643. shCHD1-2_1 (ATAC-seq) Organism: Homo sapiens Source name: shCHD1-2_1 Platform: GPL20301 Series: GSE126918 GSE127241 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3632nnn/GSM3632977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5437812 Sample Accession: GSM3632977 ID: 303632977 10644. ATAC-seq in MLL-AF4 ALL patient blasts Organism: Homo sapiens Source name: MLL-AF4 ALL patient blasts Platform: GPL18573 Series: GSE135025 GSE135026 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3983nnn/GSM3983901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608397 Sample Accession: GSM3983901 ID: 303983901 10645. ATAC-seq in THP1 cells Organism: Homo sapiens Source name: Leukemia cell line (THP1) Platform: GPL18573 Series: GSE135025 GSE135026 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3983nnn/GSM3983900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608396 Sample Accession: GSM3983900 ID: 303983900 10646. E12.5-Wnt1Cre;Meis2f/f-rep3 [ATAC-seq] Organism: Mus musculus Source name: E12.5-Wnt1Cre;Meis2f/f Platform: GPL19057 Series: GSE143910 GSE143914 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4276nnn/GSM4276587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7580973 Sample Accession: GSM4276587 ID: 304276587 10647. E12.5-Wnt1Cre;Meis2f/f-rep2 [ATAC-seq] Organism: Mus musculus Source name: E12.5-Wnt1Cre;Meis2f/f Platform: GPL19057 Series: GSE143910 GSE143914 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4276nnn/GSM4276586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7580972 Sample Accession: GSM4276586 ID: 304276586 10648. E12.5-Wnt1Cre;Meis2f/f-rep1 [ATAC-seq] Organism: Mus musculus Source name: E12.5-Wnt1Cre;Meis2f/f Platform: GPL19057 Series: GSE143910 GSE143914 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4276nnn/GSM4276585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7580971 Sample Accession: GSM4276585 ID: 304276585 10649. E12.5-WT-rep3 [ATAC-seq] Organism: Mus musculus Source name: E12.5-WT Platform: GPL19057 Series: GSE143910 GSE143914 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4276nnn/GSM4276584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7580970 Sample Accession: GSM4276584 ID: 304276584 10650. E12.5-WT-rep2 [ATAC-seq] Organism: Mus musculus Source name: E12.5-WT Platform: GPL19057 Series: GSE143910 GSE143914 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4276nnn/GSM4276583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7580969 Sample Accession: GSM4276583 ID: 304276583 10651. E12.5-WT-rep1 [ATAC-seq] Organism: Mus musculus Source name: E12.5-WT Platform: GPL19057 Series: GSE143910 GSE143914 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4276nnn/GSM4276582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7580968 Sample Accession: GSM4276582 ID: 304276582 10652. ATAC-seq from mouse ESC with stably integrated Zprom::GFP reporter, sorted for presence of GFP Organism: Mus musculus Source name: E14 mouse ESC with stably integrated Zscan4c promoter reporter driving expression of GFP Platform: GPL17021 Series: GSE140620 GSE140621 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4175nnn/GSM4175891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176660 Sample Accession: GSM4175891 ID: 304175891 10653. KO 4-8 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918340 Sample Accession: GSM4413798 ID: 304413798 10654. KO 4-7 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918339 Sample Accession: GSM4413797 ID: 304413797 10655. KO 3-5 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918338 Sample Accession: GSM4413796 ID: 304413796 10656. KO 3-3 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918337 Sample Accession: GSM4413795 ID: 304413795 10657. KO 3-2 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918336 Sample Accession: GSM4413794 ID: 304413794 10658. KO 2-3 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918335 Sample Accession: GSM4413793 ID: 304413793 10659. KO 1-1 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918334 Sample Accession: GSM4413792 ID: 304413792 10660. WT 4-4 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918333 Sample Accession: GSM4413791 ID: 304413791 10661. WT 4-3 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918332 Sample Accession: GSM4413790 ID: 304413790 10662. WT 4-2 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918331 Sample Accession: GSM4413789 ID: 304413789 10663. WT 3-7 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918330 Sample Accession: GSM4413788 ID: 304413788 10664. WT 3-4 ATAC-seq Organism: Mus musculus Source name: primary cortical neurons Platform: GPL19057 Series: GSE147056 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4413nnn/GSM4413787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7918329 Sample Accession: GSM4413787 ID: 304413787 10665. Fertilized egg ATAC-Seq at SRPK1 knock-down condition replicate2 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4205nnn/GSM4205151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7270514 Sample Accession: GSM4205151 ID: 304205151 10666. Fertilized egg ATAC-Seq at SRPK1 knock-down condition replicate1 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4205nnn/GSM4205150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7270513 Sample Accession: GSM4205150 ID: 304205150 10667. Fertilized egg ATAC-Seq at wild-type condition replicate2_1 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4205nnn/GSM4205149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7270512 Sample Accession: GSM4205149 ID: 304205149 10668. Fertilized egg ATAC-Seq at wild-type condition replicate1_1 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4205nnn/GSM4205148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7270511 Sample Accession: GSM4205148 ID: 304205148 10669. Fertilized egg ATAC-Seq at Double Mutation condition replicate2 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761620 Sample Accession: GSM4048275 ID: 304048275 10670. Fertilized egg ATAC-Seq at S43A condition replicate2 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761619 Sample Accession: GSM4048274 ID: 304048274 10671. Fertilized egg ATAC-Seq at S9A condition replicate2 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761618 Sample Accession: GSM4048273 ID: 304048273 10672. Fertilized egg ATAC-Seq at wild-type condition replicate2 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761617 Sample Accession: GSM4048272 ID: 304048272 10673. Fertilized egg ATAC-Seq at Double Mutation condition replicate1 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761616 Sample Accession: GSM4048271 ID: 304048271 10674. Fertilized egg ATAC-Seq at S43A condition replicate1 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761615 Sample Accession: GSM4048270 ID: 304048270 10675. Fertilized egg ATAC-Seq at S9A condition replicate1 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761614 Sample Accession: GSM4048269 ID: 304048269 10676. Fertilized egg ATAC-Seq at wild-type condition replicate1 Organism: Mus musculus Source name: Fertilized egg Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761613 Sample Accession: GSM4048268 ID: 304048268 10677. Sperm ATAC-Seq at Double Mutation condition Organism: Mus musculus Source name: Sperm Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761612 Sample Accession: GSM4048267 ID: 304048267 10678. Sperm ATAC-Seq at S43A condition Organism: Mus musculus Source name: Sperm Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761611 Sample Accession: GSM4048266 ID: 304048266 10679. Sperm ATAC-Seq at S9A condition Organism: Mus musculus Source name: Sperm Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761610 Sample Accession: GSM4048265 ID: 304048265 10680. Sperm ATAC-Seq at wild-type condition Organism: Mus musculus Source name: Sperm Platform: GPL21103 Series: GSE136403 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6761609 Sample Accession: GSM4048264 ID: 304048264 10681. ATAC-seq_WT hMSCs_3 Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE146387 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7878354 Sample Accession: GSM4403051 ID: 304403051 10682. ATAC-seq_WT hMSCs_2 Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE146387 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7878353 Sample Accession: GSM4403050 ID: 304403050 10683. ATAC-seq_WT hMSCs_1 Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE146387 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7878352 Sample Accession: GSM4403049 ID: 304403049 10684. ATAC-seq_ZKSCAN3 defecient hMSCs_3 Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE146387 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7878351 Sample Accession: GSM4403048 ID: 304403048 10685. ATAC-seq_ZKSCAN3 defecient hMSCs_2 Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE146387 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7878350 Sample Accession: GSM4403047 ID: 304403047 10686. ATAC-seq_ZKSCAN3 defecient hMSCs_1 Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE146387 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7878349 Sample Accession: GSM4403046 ID: 304403046 10687. Chx10-Cre Rb1/p107-3 [ATAC-seq] Organism: Mus musculus Source name: Retina Platform: GPL21103 Series: GSE144428 GSE144429 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4288nnn/GSM4288155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7645102 Sample Accession: GSM4288155 ID: 304288155 10688. Chx10-Cre Rb1/p107-2 [ATAC-seq] Organism: Mus musculus Source name: Retina Platform: GPL21103 Series: GSE144428 GSE144429 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4288nnn/GSM4288154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7645101 Sample Accession: GSM4288154 ID: 304288154 10689. Chx10-Cre Rb1/p107-1 [ATAC-seq] Organism: Mus musculus Source name: Retina Platform: GPL21103 Series: GSE144428 GSE144429 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4288nnn/GSM4288153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7645100 Sample Accession: GSM4288153 ID: 304288153 10690. Chx10-Cre Rb1/p107/Hells-3 [ATAC-seq] Organism: Mus musculus Source name: Retina Platform: GPL21103 Series: GSE144428 GSE144429 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4288nnn/GSM4288152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7645099 Sample Accession: GSM4288152 ID: 304288152 10691. Chx10-Cre Rb1/p107/Hells-2 [ATAC-seq] Organism: Mus musculus Source name: Retina Platform: GPL21103 Series: GSE144428 GSE144429 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4288nnn/GSM4288151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7645098 Sample Accession: GSM4288151 ID: 304288151 10692. Chx10-Cre Rb1/p107/Hells-1 [ATAC-seq] Organism: Mus musculus Source name: Retina Platform: GPL21103 Series: GSE144428 GSE144429 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4288nnn/GSM4288150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7645097 Sample Accession: GSM4288150 ID: 304288150 10693. Rb1/p107/Hells-1 [ATAC-seq] Organism: Mus musculus Source name: Retina Platform: GPL21103 Series: GSE144428 GSE144429 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4288nnn/GSM4288149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7645096 Sample Accession: GSM4288149 ID: 304288149 10694. ATAC-seq_WT3_Treg Organism: Mus musculus Source name: CD4+ Foxp3GFP+ Treg Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545767 Sample Accession: GSM4261103 ID: 304261103 10695. ATAC-seq_WT3_Tcon Organism: Mus musculus Source name: CD4+ Foxp3GFP– Tconv Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545766 Sample Accession: GSM4261102 ID: 304261102 10696. ATAC-seq_WT2_Treg Organism: Mus musculus Source name: CD4+ Foxp3GFP+ Treg Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261101/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545765 Sample Accession: GSM4261101 ID: 304261101 10697. ATAC-seq_WT2_Tcon Organism: Mus musculus Source name: CD4+ Foxp3GFP– Tconv Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545764 Sample Accession: GSM4261100 ID: 304261100 10698. ATAC-seq_WT1_Treg Organism: Mus musculus Source name: CD4+ Foxp3GFP+ Treg Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545763 Sample Accession: GSM4261099 ID: 304261099 10699. ATAC-seq_WT1_Tcon Organism: Mus musculus Source name: CD4+ Foxp3GFP– Tconv Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545762 Sample Accession: GSM4261098 ID: 304261098 10700. ATAC-seq_KO3_Treg Organism: Mus musculus Source name: CD4+ Foxp3GFP+ Treg Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545761 Sample Accession: GSM4261097 ID: 304261097 10701. ATAC-seq_KO3_Tcon Organism: Mus musculus Source name: CD4+ Foxp3GFP– Tconv Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545760 Sample Accession: GSM4261096 ID: 304261096 10702. ATAC-seq_KO2_Treg Organism: Mus musculus Source name: CD4+ Foxp3GFP+ Treg Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545759 Sample Accession: GSM4261095 ID: 304261095 10703. ATAC-seq_KO2_Tcon Organism: Mus musculus Source name: CD4+ Foxp3GFP– Tconv Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545758 Sample Accession: GSM4261094 ID: 304261094 10704. ATAC-seq_KO1_Treg Organism: Mus musculus Source name: CD4+ Foxp3GFP+ Treg Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545757 Sample Accession: GSM4261093 ID: 304261093 10705. ATAC-seq_KO1_Tcon Organism: Mus musculus Source name: CD4+ Foxp3GFP– Tconv Platform: GPL17021 Series: GSE143515 GSE143516 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4261nnn/GSM4261092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7545756 Sample Accession: GSM4261092 ID: 304261092 10706. ProE-1_R1: ProE-1 ATAC-Seq Organism: Mus musculus Source name: Proerythroblasts Platform: GPL17021 Series: GSE132130 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3845nnn/GSM3845588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5961225 Sample Accession: GSM3845588 ID: 303845588 10707. ProE-2_R1: ProE-2 ATAC-Seq Organism: Mus musculus Source name: Proerythroblasts Platform: GPL17021 Series: GSE132130 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3845nnn/GSM3845587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5961224 Sample Accession: GSM3845587 ID: 303845587 10708. ATAC_seq_topi_mutant_rep2b Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806737 Sample Accession: GSM4340609 ID: 304340609 10709. ATAC_seq_topi_mutant_rep2a Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806736 Sample Accession: GSM4340608 ID: 304340608 10710. ATAC_seq_topi_mutant_rep1b Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806735 Sample Accession: GSM4340607 ID: 304340607 10711. ATAC_seq_topi_mutant_rep1a Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806734 Sample Accession: GSM4340606 ID: 304340606 10712. ATAC_seq_aly_mutant_rep3b Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806733 Sample Accession: GSM4340605 ID: 304340605 10713. ATAC_seq_aly_mutant_rep3a Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806732 Sample Accession: GSM4340604 ID: 304340604 10714. ATAC_seq_aly_mutant_rep2b Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806731 Sample Accession: GSM4340603 ID: 304340603 10715. ATAC_seq_aly_mutant_rep2a Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806730 Sample Accession: GSM4340602 ID: 304340602 10716. ATAC_seq_aly_mutant_rep1b Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806729 Sample Accession: GSM4340601 ID: 304340601 10717. ATAC_seq_aly_mutant_rep1a Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806728 Sample Accession: GSM4340600 ID: 304340600 10718. ATAC_seq_72hrPHS_rep3 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806727 Sample Accession: GSM4340599 ID: 304340599 10719. ATAC_seq_72hrPHS_rep2 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806726 Sample Accession: GSM4340598 ID: 304340598 10720. ATAC_seq_72hrPHS_rep1 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806725 Sample Accession: GSM4340597 ID: 304340597 10721. ATAC_seq_48hrPHS_rep3 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806724 Sample Accession: GSM4340596 ID: 304340596 10722. ATAC_seq_48hrPHS_rep2 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806723 Sample Accession: GSM4340595 ID: 304340595 10723. ATAC_seq_48hrPHS_rep1 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806722 Sample Accession: GSM4340594 ID: 304340594 10724. ATAC_seq_ctrl_48hrPHS_rep2 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806721 Sample Accession: GSM4340593 ID: 304340593 10725. ATAC_seq_ctrl_48hrPHS_rep1 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806720 Sample Accession: GSM4340592 ID: 304340592 10726. ATAC_seq_bam_mutant_rep2 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806719 Sample Accession: GSM4340591 ID: 304340591 10727. ATAC_seq_bam_mutant_rep1 Organism: Drosophila melanogaster Source name: testis Platform: GPL21306 Series: GSE145975 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7806718 Sample Accession: GSM4340590 ID: 304340590 10728. ATAC-seq_G1E-ER4_24hr_rep2 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023497 Sample Accession: GSM4131041 ID: 304131041 10729. ATAC-seq_G1E-ER4_24hr_rep1 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023496 Sample Accession: GSM4131040 ID: 304131040 10730. ATAC-seq_G1E-ER4_12hr_rep2 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023495 Sample Accession: GSM4131039 ID: 304131039 10731. ATAC-seq_G1E-ER4_12hr_rep1 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023494 Sample Accession: GSM4131038 ID: 304131038 10732. ATAC-seq_G1E-ER4_6hr_rep2 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023493 Sample Accession: GSM4131037 ID: 304131037 10733. ATAC-seq_G1E-ER4_6hr_rep1 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023492 Sample Accession: GSM4131036 ID: 304131036 10734. ATAC-seq_G1E-ER4_2hr_rep2 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023491 Sample Accession: GSM4131035 ID: 304131035 10735. ATAC-seq_G1E-ER4_2hr_rep1 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023490 Sample Accession: GSM4131034 ID: 304131034 10736. ATAC-seq_G1E-ER4_0hr_rep2 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023489 Sample Accession: GSM4131033 ID: 304131033 10737. ATAC-seq_G1E-ER4_0hr_rep1 Organism: Mus musculus Source name: G1E-ER4 Platform: GPL19057 Series: GSE139105 GSE139117 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4131nnn/GSM4131032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7023488 Sample Accession: GSM4131032 ID: 304131032 10738. mouse BAT ATAC-seq cre-3 Organism: Mus musculus Source name: brown adipose tissue Platform: GPL19057 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5564355 Sample Accession: GSM3684372 ID: 303684372 10739. mouse BAT ATAC-seq cre-2 Organism: Mus musculus Source name: brown adipose tissue Platform: GPL19057 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5564354 Sample Accession: GSM3684371 ID: 303684371 10740. mouse BAT ATAC-seq cre-1 Organism: Mus musculus Source name: brown adipose tissue Platform: GPL19057 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5564353 Sample Accession: GSM3684370 ID: 303684370 10741. mouse BAT ATAC-seq lox-3 Organism: Mus musculus Source name: brown adipose tissue Platform: GPL19057 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5564352 Sample Accession: GSM3684369 ID: 303684369 10742. mouse BAT ATAC-seq lox-2 Organism: Mus musculus Source name: brown adipose tissue Platform: GPL19057 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5564351 Sample Accession: GSM3684368 ID: 303684368 10743. mouse BAT ATAC-seq lox-1 Organism: Mus musculus Source name: brown adipose tissue Platform: GPL19057 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5564350 Sample Accession: GSM3684367 ID: 303684367 10744. mouse inguinal ATAC-seq cre-3 Organism: Mus musculus Source name: inguinal adipose tissue Platform: GPL21103 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7299545 Sample Accession: GSM4213036 ID: 304213036 10745. mouse inguinal ATAC-seq cre-2 Organism: Mus musculus Source name: inguinal adipose tissue Platform: GPL21103 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7299544 Sample Accession: GSM4213035 ID: 304213035 10746. mouse inguinal ATAC-seq cre-1 Organism: Mus musculus Source name: inguinal adipose tissue Platform: GPL21103 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7299543 Sample Accession: GSM4213034 ID: 304213034 10747. mouse inguinal ATAC-seq lox-3 Organism: Mus musculus Source name: inguinal adipose tissue Platform: GPL21103 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7299542 Sample Accession: GSM4213033 ID: 304213033 10748. mouse inguinal ATAC-seq lox-2 Organism: Mus musculus Source name: inguinal adipose tissue Platform: GPL21103 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7299541 Sample Accession: GSM4213032 ID: 304213032 10749. mouse inguinal ATAC-seq lox-1 Organism: Mus musculus Source name: inguinal adipose tissue Platform: GPL21103 Series: GSE128747 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7299540 Sample Accession: GSM4213031 ID: 304213031 10750. CPTH6_TGF_beta_3 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719095 Sample Accession: GSM4310212 ID: 304310212 10751. CPTH6_Vehicle_3 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719094 Sample Accession: GSM4310211 ID: 304310211 10752. DMSO_TGF_beta_3 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719093 Sample Accession: GSM4310210 ID: 304310210 10753. DMSO_Vehicle_3 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719092 Sample Accession: GSM4310209 ID: 304310209 10754. CPTH6_TGF_beta_2 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719091 Sample Accession: GSM4310208 ID: 304310208 10755. CPTH6_Vehicle_2 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310207/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719090 Sample Accession: GSM4310207 ID: 304310207 10756. DMSO_TGF_beta_2 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719089 Sample Accession: GSM4310206 ID: 304310206 10757. DMSO_Vehicle_2 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719088 Sample Accession: GSM4310205 ID: 304310205 10758. CPTH6_TGF_beta_1 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719087 Sample Accession: GSM4310204 ID: 304310204 10759. CPTH6_Vehicle_1 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719086 Sample Accession: GSM4310203 ID: 304310203 10760. DMSO_TGF_beta_1 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719085 Sample Accession: GSM4310202 ID: 304310202 10761. DMSO_Vehicle_1 Organism: Homo sapiens Source name: Biliary Epithelial Cells Platform: GPL20301 Series: GSE145252 GSE145253 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4310nnn/GSM4310201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7719084 Sample Accession: GSM4310201 ID: 304310201 10762. MKL-1 Combo-2 Organism: Homo sapiens Source name: MKL-1 MCC Cells Platform: GPL18573 Series: GSE124864 GSE140505 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4172nnn/GSM4172941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169803 Sample Accession: GSM4172941 ID: 304172941 10763. MKL-1 Combo-1 Organism: Homo sapiens Source name: MKL-1 MCC Cells Platform: GPL18573 Series: GSE124864 GSE140505 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4172nnn/GSM4172940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169802 Sample Accession: GSM4172940 ID: 304172940 10764. MKL-1 dBRD9-2 Organism: Homo sapiens Source name: MKL-1 MCC Cells Platform: GPL18573 Series: GSE124864 GSE140505 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4172nnn/GSM4172939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169801 Sample Accession: GSM4172939 ID: 304172939 10765. MKL-1 dBRD9-1 Organism: Homo sapiens Source name: MKL-1 MCC Cells Platform: GPL18573 Series: GSE124864 GSE140505 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4172nnn/GSM4172938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169800 Sample Accession: GSM4172938 ID: 304172938 10766. MKL-1 LSD1i-2 Organism: Homo sapiens Source name: MKL-1 MCC Cells Platform: GPL18573 Series: GSE124864 GSE140505 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4172nnn/GSM4172937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169799 Sample Accession: GSM4172937 ID: 304172937 10767. MKL-1 LSD1i-1 Organism: Homo sapiens Source name: MKL-1 MCC Cells Platform: GPL18573 Series: GSE124864 GSE140505 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4172nnn/GSM4172936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169798 Sample Accession: GSM4172936 ID: 304172936 10768. MKL-1 Control-2 Organism: Homo sapiens Source name: MKL-1 MCC Cells Platform: GPL18573 Series: GSE124864 GSE140505 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4172nnn/GSM4172935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169797 Sample Accession: GSM4172935 ID: 304172935 10769. MKL-1 Control-1 Organism: Homo sapiens Source name: MKL-1 MCC Cells Platform: GPL18573 Series: GSE124864 GSE140505 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4172nnn/GSM4172934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169796 Sample Accession: GSM4172934 ID: 304172934 10770. ATAC-seq_SiHa Organism: Homo sapiens Source name: SiHa Platform: GPL16791 Series: GSE143026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7498523 Sample Accession: GSM4249097 ID: 304249097 10771. ATAC-seq_SCC-090 Organism: Homo sapiens Source name: SCC-090 Platform: GPL16791 Series: GSE143026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7498522 Sample Accession: GSM4249096 ID: 304249096 10772. ATAC-seq_HMS-001 Organism: Homo sapiens Source name: HMS-001 Platform: GPL16791 Series: GSE143026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7498521 Sample Accession: GSM4249095 ID: 304249095 10773. ATAC-seq_Caski Organism: Homo sapiens Source name: Caski Platform: GPL16791 Series: GSE143026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7498520 Sample Accession: GSM4249094 ID: 304249094 10774. ATAC-seq_93-VU147T Organism: Homo sapiens Source name: 93-VU147T Platform: GPL16791 Series: GSE143026 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7498519 Sample Accession: GSM4249093 ID: 304249093 10775. RNAPII-hypo_+UV_X2h Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255055 Sample Accession: GSM3564720 ID: 303564720 10776. RNAPII-hypo_NO UV_+DRB_X4h Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255054 Sample Accession: GSM3564719 ID: 303564719 10777. RNAPII-hypo +UV_-DRB_X4h Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255053 Sample Accession: GSM3564718 ID: 303564718 10778. RNAPII-hypo_+UV_+DRB_X4h Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255052 Sample Accession: GSM3564717 ID: 303564717 10779. H3K27me3_+UV Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255051 Sample Accession: GSM3564716 ID: 303564716 10780. H3K27me3_NO_UV Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255050 Sample Accession: GSM3564715 ID: 303564715 10781. Input_NO_UV Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255049 Sample Accession: GSM3564714 ID: 303564714 10782. H3K27ac_+UV_2 Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255048 Sample Accession: GSM3564713 ID: 303564713 10783. H3K27ac_+UV_1 Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255047 Sample Accession: GSM3564712 ID: 303564712 10784. H3K27ac_NO_UV_2 Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255046 Sample Accession: GSM3564711 ID: 303564711 10785. H3K27ac_NO_UV_1 Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255045 Sample Accession: GSM3564710 ID: 303564710 10786. ATAC_+UV_2 Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255044 Sample Accession: GSM3564709 ID: 303564709 10787. ATAC_+UV_1 Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255043 Sample Accession: GSM3564708 ID: 303564708 10788. ATAC_NO_UV_2 Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255042 Sample Accession: GSM3564707 ID: 303564707 10789. ATAC_NO_UV_1 Organism: Homo sapiens Source name: VH10 Platform: GPL16791 Series: GSE125181 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3564nnn/GSM3564706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5255041 Sample Accession: GSM3564706 ID: 303564706 10790. ATAC-Bseq_Dnmt3aKO_2 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169977 Sample Accession: GSM4172971 ID: 304172971 10791. ATAC-Bseq_Dnmt3aKO_1 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169976 Sample Accession: GSM4172970 ID: 304172970 10792. ATAC-Bseq_Tet2KO_2 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7169975 Sample Accession: GSM4172969 ID: 304172969 10793. ATAC-Bseq_Tet2KO_1 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170310 Sample Accession: GSM4172968 ID: 304172968 10794. ATAC-Bseq_WT2 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170309 Sample Accession: GSM4172967 ID: 304172967 10795. ATAC-Bseq_WT1 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170308 Sample Accession: GSM4172966 ID: 304172966 10796. scATAC_Dnmt3aKO_2 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170307 Sample Accession: GSM4172965 ID: 304172965 10797. scATAC_Dnmt3aKO_1 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170306 Sample Accession: GSM4172964 ID: 304172964 10798. scATAC_Tet2KO_2 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170305 Sample Accession: GSM4172963 ID: 304172963 10799. scATAC_Tet2KO_1 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170304 Sample Accession: GSM4172962 ID: 304172962 10800. scATAC_WT2 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170303 Sample Accession: GSM4172961 ID: 304172961 10801. scATAC_WT1 Organism: Mus musculus Source name: Lineage negative, Sca1 positive, c-Kit positive hematopoietic bone marrow progenitors Platform: GPL13112 Series: GSE124822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7170302 Sample Accession: GSM4172960 ID: 304172960 10802. WT_replicate3 [ATAC-seq] Organism: Mus musculus Source name: WT_astrocytes Platform: GPL21103 Series: GSE129608 GSE130119 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5665019 Sample Accession: GSM3717012 ID: 303717012 10803. WT_replicate2 [ATAC-seq] Organism: Mus musculus Source name: WT_astrocytes Platform: GPL21103 Series: GSE129608 GSE130119 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5665018 Sample Accession: GSM3717011 ID: 303717011 10804. WT_replicate1 [ATAC-seq] Organism: Mus musculus Source name: WT_astrocytes Platform: GPL21103 Series: GSE129608 GSE130119 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5665017 Sample Accession: GSM3717010 ID: 303717010 10805. MafgKO_replicate3 [ATAC-seq] Organism: Mus musculus Source name: MafgKO_astrocytes Platform: GPL21103 Series: GSE129608 GSE130119 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5665016 Sample Accession: GSM3717009 ID: 303717009 10806. MafgKO_replicate2 [ATAC-seq] Organism: Mus musculus Source name: MafgKO_astrocytes Platform: GPL21103 Series: GSE129608 GSE130119 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5665015 Sample Accession: GSM3717008 ID: 303717008 10807. MafgKO_replicate1 [ATAC-seq] Organism: Mus musculus Source name: MafgKO_astrocytes Platform: GPL21103 Series: GSE129608 GSE130119 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5665014 Sample Accession: GSM3717007 ID: 303717007 10808. ATAC-seq_DP_F1_36_Rep2B_Rep3T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348110 Sample Accession: GSM4214136 ID: 304214136 10809. ATAC-seq_DP_F1_36_Rep2B_Rep2T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348109 Sample Accession: GSM4214135 ID: 304214135 10810. ATAC-seq_DP_F1_36_Rep2B_Rep1T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348108 Sample Accession: GSM4214134 ID: 304214134 10811. ATAC-seq_DP_F1_34_Rep1B_Rep3T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348107 Sample Accession: GSM4214133 ID: 304214133 10812. ATAC-seq_DP_F1_34_Rep1B_Rep2T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348106 Sample Accession: GSM4214132 ID: 304214132 10813. ATAC-seq_DP_F1_34_Rep1B_Rep1T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348105 Sample Accession: GSM4214131 ID: 304214131 10814. ATAC-seq_DP_NOD_Rep2B_Rep3T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348104 Sample Accession: GSM4214130 ID: 304214130 10815. ATAC-seq_DP_NOD_Rep2B_Rep2T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348103 Sample Accession: GSM4214129 ID: 304214129 10816. ATAC-seq_DP_NOD_Rep2B_Rep1T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348102 Sample Accession: GSM4214128 ID: 304214128 10817. ATAC-seq_DP_BL6_Rep2B_Rep3T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214127/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348101 Sample Accession: GSM4214127 ID: 304214127 10818. ATAC-seq_DP_BL6_Rep2B_Rep2T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348100 Sample Accession: GSM4214126 ID: 304214126 10819. ATAC-seq_DP_BL6_Rep2B_Rep1T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348099 Sample Accession: GSM4214125 ID: 304214125 10820. ATAC-seq_DP_NOD_Rep1B_4T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348098 Sample Accession: GSM4214124 ID: 304214124 10821. ATAC-seq_DP_NOD_Rep1B_3T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348097 Sample Accession: GSM4214123 ID: 304214123 10822. ATAC-seq_DP_NOD_Rep1B_2T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348096 Sample Accession: GSM4214122 ID: 304214122 10823. ATAC-seq_DP_NOD_Rep1B_1T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348095 Sample Accession: GSM4214121 ID: 304214121 10824. ATAC-seq_DP_BL6_Rep1B_3T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348094 Sample Accession: GSM4214120 ID: 304214120 10825. ATAC-seq_DP_BL6_Rep1B_2T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348093 Sample Accession: GSM4214119 ID: 304214119 10826. ATAC-seq_DP_BL6_Rep1B_1T Organism: Mus musculus Source name: CD4+ CD8+ thymocytes Platform: GPL19057 Series: GSE141845 GSE141853 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4214nnn/GSM4214118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7348092 Sample Accession: GSM4214118 ID: 304214118 10827. WT hMSCs rep 3 [ATAC-Seq] Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE145019 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7701006 Sample Accession: GSM4304342 ID: 304304342 10828. WT hMSCs rep 2 [ATAC-Seq] Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE145019 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7701005 Sample Accession: GSM4304341 ID: 304304341 10829. WT hMSCs rep 1 [ATAC-Seq] Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE145019 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7701004 Sample Accession: GSM4304340 ID: 304304340 10830. CLOCK defecient hMSCs rep 3 [ATAC-Seq] Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE145019 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7701003 Sample Accession: GSM4304339 ID: 304304339 10831. CLOCK defecient hMSCs rep 2 [ATAC-Seq] Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE145019 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7701002 Sample Accession: GSM4304338 ID: 304304338 10832. CLOCK defecient hMSCs rep 1 [ATAC-Seq] Organism: Homo sapiens Source name: Mesenchymal stem cell Platform: GPL20795 Series: GSE145019 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7701001 Sample Accession: GSM4304337 ID: 304304337 10833. mTECs_from_Chd4cKO_mice_ATAC-seq_2 Organism: Mus musculus Source name: mTECs Platform: GPL17021 Series: GSE144879 GSE144880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7691604 Sample Accession: GSM4299892 ID: 304299892 10834. mTECs_from_Chd4cKO_mice_ATAC-seq_1 Organism: Mus musculus Source name: mTECs Platform: GPL17021 Series: GSE144879 GSE144880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7691603 Sample Accession: GSM4299891 ID: 304299891 10835. mTECs_from_Fezf2cKO_mice_ATAC-seq_2 Organism: Mus musculus Source name: mTECs Platform: GPL17021 Series: GSE144879 GSE144880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7691602 Sample Accession: GSM4299890 ID: 304299890 10836. mTECs_from_Fezf2cKO_mice_ATAC-seq_1 Organism: Mus musculus Source name: mTECs Platform: GPL17021 Series: GSE144879 GSE144880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7691601 Sample Accession: GSM4299889 ID: 304299889 10837. mTECs_from_WT_mice_ATAC-seq_2 Organism: Mus musculus Source name: mTECs Platform: GPL17021 Series: GSE144879 GSE144880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7691600 Sample Accession: GSM4299888 ID: 304299888 10838. mTECs_from_WT_mice_ATAC-seq_1 Organism: Mus musculus Source name: mTECs Platform: GPL17021 Series: GSE144879 GSE144880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7691599 Sample Accession: GSM4299887 ID: 304299887 10839. ATAC-seq.DR+/+_rep2 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL17021 Series: GSE119817 GSE119820 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3384nnn/GSM3384424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4671050 Sample Accession: GSM3384424 ID: 303384424 10840. ATAC-seq.DR+/+_rep1 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL17021 Series: GSE119817 GSE119820 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3384nnn/GSM3384423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4671049 Sample Accession: GSM3384423 ID: 303384423 10841. ATAC-seq.DR-/-_rep2 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL17021 Series: GSE119817 GSE119820 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3384nnn/GSM3384422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4671048 Sample Accession: GSM3384422 ID: 303384422 10842. ATAC-seq.DR-/-_rep1 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL17021 Series: GSE119817 GSE119820 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3384nnn/GSM3384421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4671047 Sample Accession: GSM3384421 ID: 303384421 10843. ATAC-seq P2 Organism: Sparassis latifolia Source name: primordia Platform: GPL26515 Series: GSE129983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705795 Sample Accession: GSM3728947 ID: 303728947 10844. ATAC-seq P1 Organism: Sparassis latifolia Source name: primordia Platform: GPL26515 Series: GSE129983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705794 Sample Accession: GSM3728946 ID: 303728946 10845. ATAC-seq L2 Organism: Sparassis latifolia Source name: mycelia Platform: GPL26515 Series: GSE129983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705793 Sample Accession: GSM3728945 ID: 303728945 10846. ATAC-seq L1 Organism: Sparassis latifolia Source name: mycelia Platform: GPL26515 Series: GSE129983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705792 Sample Accession: GSM3728944 ID: 303728944 10847. ATAC-seq D2 Organism: Sparassis latifolia Source name: mycelia Platform: GPL26515 Series: GSE129983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705791 Sample Accession: GSM3728943 ID: 303728943 10848. ATAC-seq D1 Organism: Sparassis latifolia Source name: mycelia Platform: GPL26515 Series: GSE129983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5705790 Sample Accession: GSM3728942 ID: 303728942 10849. Foreskin fibroblasts, ATAC-seq reversal of senescence rep2 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671733 Sample Accession: GSM4295146 ID: 304295146 10850. Foreskin fibroblasts, ATAC-seq reversal of senescence rep1 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671732 Sample Accession: GSM4295145 ID: 304295145 10851. Foreskin fibroblasts, ATAC-seq deep senescence rep2 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671731 Sample Accession: GSM4295144 ID: 304295144 10852. Foreskin fibroblasts, ATAC-seq deep senescence rep1 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671730 Sample Accession: GSM4295143 ID: 304295143 10853. Foreskin fibroblasts, ATAC-seq senescence rep2 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671729 Sample Accession: GSM4295142 ID: 304295142 10854. Foreskin fibroblasts, ATAC-seq senescence rep1 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671728 Sample Accession: GSM4295141 ID: 304295141 10855. Foreskin fibroblasts, ATAC-seq quiescence rep2 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671727 Sample Accession: GSM4295140 ID: 304295140 10856. Foreskin fibroblasts, ATAC-seq quiescence rep1 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671726 Sample Accession: GSM4295139 ID: 304295139 10857. Foreskin fibroblasts, ATAC-seq growing rep2 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671725 Sample Accession: GSM4295138 ID: 304295138 10858. Foreskin fibroblasts, ATAC-seq growing rep1 Organism: Homo sapiens Source name: foreskin fibroblast Platform: GPL16791 Series: GSE133292 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4295nnn/GSM4295137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7671724 Sample Accession: GSM4295137 ID: 304295137 10859. XH69_3.demultiplexed Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL19057 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7484280 Sample Accession: GSM4240345 ID: 304240345 10860. wt_e85_embryo_small.demultiplexed Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL19057 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358169 Sample Accession: GSM3903913 ID: 303903913 10861. wt_e85_embryo_large.demultiplexed Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL19057 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358168 Sample Accession: GSM3903912 ID: 303903912 10862. wt_e85_embryo_all.demultiplexed Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL19057 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358167 Sample Accession: GSM3903911 ID: 303903911 10863. 180823_NB501692_small.demultiplexed.R1.repl1 Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL19057 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358166 Sample Accession: GSM3903910 ID: 303903910 10864. 180823_NB501692_large.demultiplexed.R1.repl1 Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL19057 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358165 Sample Accession: GSM3903909 ID: 303903909 10865. 180823_NB501692_all.demultiplexed Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL19057 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358164 Sample Accession: GSM3903908 ID: 303903908 10866. HiSeq2500_small.demultiplexed Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL17021 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358172 Sample Accession: GSM3903916 ID: 303903916 10867. HiSeq2500_large.demultiplexed Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL17021 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358171 Sample Accession: GSM3903915 ID: 303903915 10868. HiSeq2500_all.demultiplexed Organism: Mus musculus Source name: E8.25 mouse embryos Platform: GPL17021 Series: GSE133244 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6358170 Sample Accession: GSM3903914 ID: 303903914 10869. ATAC KO3 Organism: Mus musculus Source name: small intestine Platform: GPL17021 Series: GSE127479 GSE127556 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444264 Sample Accession: GSM3635402 ID: 303635402 10870. ATAC KO2 Organism: Mus musculus Source name: small intestine Platform: GPL17021 Series: GSE127479 GSE127556 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444263 Sample Accession: GSM3635401 ID: 303635401 10871. ATAC KO1 Organism: Mus musculus Source name: small intestine Platform: GPL17021 Series: GSE127479 GSE127556 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444262 Sample Accession: GSM3635400 ID: 303635400 10872. ATAC WT3 Organism: Mus musculus Source name: small intestine Platform: GPL17021 Series: GSE127479 GSE127556 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444261 Sample Accession: GSM3635399 ID: 303635399 10873. ATAC WT2 Organism: Mus musculus Source name: small intestine Platform: GPL17021 Series: GSE127479 GSE127556 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444260 Sample Accession: GSM3635398 ID: 303635398 10874. ATAC WT1 Organism: Mus musculus Source name: small intestine Platform: GPL17021 Series: GSE127479 GSE127556 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444259 Sample Accession: GSM3635397 ID: 303635397 10875. [ATAC-seq] MEF flagMyod1 (rep1) Organism: Mus musculus Source name: Mouse embryonic fibroblasts Platform: GPL21103 Series: GSE126413 GSE126414 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5360533 Sample Accession: GSM3598044 ID: 303598044 10876. [ATAC-seq] MEF flagMyod1 (rep2) Organism: Mus musculus Source name: Mouse embryonic fibroblasts Platform: GPL19057 Series: GSE126413 GSE126414 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5360534 Sample Accession: GSM3598045 ID: 303598045 10877. ATAC_seq_wing Organism: Drosophila melanogaster Source name: ATAC_seq_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578086/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287836 Sample Accession: GSM3578086 ID: 303578086 10878. INPUT_Hth_ChIP_wing Organism: Drosophila melanogaster Source name: INPUT_Hth_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287835 Sample Accession: GSM3578085 ID: 303578085 10879. IP_Hth_ChIP_wing Organism: Drosophila melanogaster Source name: IP_Hth_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287834 Sample Accession: GSM3578084 ID: 303578084 10880. INPUT_Antp_GFP_ChIP_wing Organism: Drosophila melanogaster Source name: INPUT_Antp_GFP_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287833 Sample Accession: GSM3578083 ID: 303578083 10881. IP_Antp_GFP_ChIP_wing Organism: Drosophila melanogaster Source name: IP_Antp_GFP_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287832 Sample Accession: GSM3578082 ID: 303578082 10882. INPUT_Exd_R2AR5A_V5_rep2_ChIP_wing Organism: Drosophila melanogaster Source name: INPUT_Exd_R2AR5A_V5_rep2_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287831 Sample Accession: GSM3578081 ID: 303578081 10883. IP_Exd_R2AR5A_V5_rep2_ChIP_wing Organism: Drosophila melanogaster Source name: IP_Exd_R2AR5A_V5_rep2_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287830 Sample Accession: GSM3578080 ID: 303578080 10884. INPUT_Exd_V5_wt_rep2_ChIP_wing Organism: Drosophila melanogaster Source name: INPUT_Exd_V5_wt_rep2_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287829 Sample Accession: GSM3578079 ID: 303578079 10885. IP_Exd_V5_wt_rep2_ChIP_wing Organism: Drosophila melanogaster Source name: IP_Exd_V5_wt_rep2_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287828 Sample Accession: GSM3578078 ID: 303578078 10886. INPUT_Exd_R2AR5A_V5_rep1_ChIP_wing Organism: Drosophila melanogaster Source name: INPUT_Exd_R2AR5A_V5_rep1_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287827 Sample Accession: GSM3578077 ID: 303578077 10887. IP_Exd_R2AR5A_V5_rep1_ChIP_wing Organism: Drosophila melanogaster Source name: IP_Exd_R2AR5A_V5_rep1_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287826 Sample Accession: GSM3578076 ID: 303578076 10888. INPUT_Exd_V5_wt_rep1_ChIP_wing Organism: Drosophila melanogaster Source name: INPUT_Exd_V5_wt_rep1_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287825 Sample Accession: GSM3578075 ID: 303578075 10889. IP_Exd_V5_wt_rep1_ChIP_wing Organism: Drosophila melanogaster Source name: IP_Exd_V5_wt_rep1_ChIP_wing Platform: GPL19132 Series: GSE125604 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3578nnn/GSM3578074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287824 Sample Accession: GSM3578074 ID: 303578074 10890. R2_Hth_Exd_Dfd_wt_Lib21_HthF_HthR_SELEX_seq Organism: Drosophila melanogaster Source name: R2_Hth_Exd_Dfd_wt_Lib21_HthF_HthR_SELEX_seq Platform: GPL19132 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287818 Sample Accession: GSM3578068 ID: 303578068 10891. R1_Hth_Exd_Dfd_wt_Lib21_HthF_HthR_SELEX_seq Organism: Drosophila melanogaster Source name: R1_Hth_Exd_Dfd_wt_Lib21_HthF_HthR_SELEX_seq Platform: GPL19132 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287817 Sample Accession: GSM3578067 ID: 303578067 10892. R0_Hth_Exd_wt_mut_Lib16_SELEX_seq Organism: Drosophila melanogaster Source name: R0_Hth_Exd_wt_mut_Lib16_SELEX_seq Platform: GPL19132 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287816 Sample Accession: GSM3578066 ID: 303578066 10893. R1_Hth_ExdShapeMut_Lib16_SELEX_seq Organism: Drosophila melanogaster Source name: R1_Hth_ExdShapeMut_Lib16_SELEX_seq Platform: GPL13304 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287823 Sample Accession: GSM3578073 ID: 303578073 10894. R2_Hth_ExdShapeMut_Dfd_Lib21_HthF_HthR_SELEX_seq Organism: Drosophila melanogaster Source name: R2_Hth_ExdShapeMut_Dfd_Lib21_HthF_HthR_SELEX_seq Platform: GPL13304 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287822 Sample Accession: GSM3578072 ID: 303578072 10895. R2_HthShapeMut_Exd_Dfd_Lib21_HthF_HthR_SELEX_seq Organism: Drosophila melanogaster Source name: R2_HthShapeMut_Exd_Dfd_Lib21_HthF_HthR_SELEX_seq Platform: GPL13304 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287821 Sample Accession: GSM3578071 ID: 303578071 10896. R1_Hth_Exd_wt_Lib16_SELEX_seq Organism: Drosophila melanogaster Source name: R1_Hth_Exd_wt_Lib16_SELEX_seq Platform: GPL13304 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287820 Sample Accession: GSM3578070 ID: 303578070 10897. R2_Hth_Exd_Dfd_wt_Lib30_SELEX_seq Organism: Drosophila melanogaster Source name: R2_Hth_Exd_Dfd_wt_Lib30_SELEX_seq Platform: GPL13304 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287819 Sample Accession: GSM3578069 ID: 303578069 10898. R0_Hth_Exd_Dfd_wt_Lib30_SELEX_seq Organism: Drosophila melanogaster Source name: R0_Hth_Exd_Dfd_wt_Lib30_SELEX_seq Platform: GPL13304 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287815 Sample Accession: GSM3578065 ID: 303578065 10899. R0_Hth_Exd_Dfd_wt_mut_Lib21_HthF_HthR_SELEX_seq Organism: Drosophila melanogaster Source name: R0_Hth_Exd_Dfd_wt_mut_Lib21_HthF_HthR_SELEX_seq Platform: GPL13304 Series: GSE125604 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5287814 Sample Accession: GSM3578064 ID: 303578064 10900. ATAC-seq_Jurkat Organism: Homo sapiens Source name: Human Jurkat cells Platform: GPL18573 Series: GSE132209 GSE132216 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5974136 Sample Accession: GSM3854041 ID: 303854041 10901. 302_whole_33_H21_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897039/ Sample Accession: GSM3897039 ID: 303897039 10902. 301_whole_33_H21_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897038/ Sample Accession: GSM3897038 ID: 303897038 10903. 300_whole_33_H20_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897037/ Sample Accession: GSM3897037 ID: 303897037 10904. 299_whole_33_H20_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897036/ Sample Accession: GSM3897036 ID: 303897036 10905. 298_whole_27_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897035/ Sample Accession: GSM3897035 ID: 303897035 10906. 297_whole_27_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897034/ Sample Accession: GSM3897034 ID: 303897034 10907. 296_whole_27_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897033/ Sample Accession: GSM3897033 ID: 303897033 10908. 295_whole_27_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897032/ Sample Accession: GSM3897032 ID: 303897032 10909. 294_whole_42_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897031/ Sample Accession: GSM3897031 ID: 303897031 10910. 293_whole_42_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897030/ Sample Accession: GSM3897030 ID: 303897030 10911. 292_whole_42_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897029/ Sample Accession: GSM3897029 ID: 303897029 10912. 291_whole_42_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897028/ Sample Accession: GSM3897028 ID: 303897028 10913. 290_glial_125_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897027/ Sample Accession: GSM3897027 ID: 303897027 10914. 289_glial_125_1205.4_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897026/ Sample Accession: GSM3897026 ID: 303897026 10915. 288_neuronal_125_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897025/ Sample Accession: GSM3897025 ID: 303897025 10916. 287_neuronal_125_1205.4_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897024/ Sample Accession: GSM3897024 ID: 303897024 10917. 286_whole_59_1205.4_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897023/ Sample Accession: GSM3897023 ID: 303897023 10918. 285_whole_59_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897022/ Sample Accession: GSM3897022 ID: 303897022 10919. 284_whole_41_1205.4_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897021/ Sample Accession: GSM3897021 ID: 303897021 10920. 283_whole_41_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897020/ Sample Accession: GSM3897020 ID: 303897020 10921. 282_whole_41_0524.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897019/ Sample Accession: GSM3897019 ID: 303897019 10922. 280_whole_25_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897018/ Sample Accession: GSM3897018 ID: 303897018 10923. 279_whole_25_0524.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897017/ Sample Accession: GSM3897017 ID: 303897017 10924. 278_whole_46_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897016/ Sample Accession: GSM3897016 ID: 303897016 10925. 277_whole_46_0524.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897015/ Sample Accession: GSM3897015 ID: 303897015 10926. 276_glial_206_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897014/ Sample Accession: GSM3897014 ID: 303897014 10927. 275_glial_206_1205.4_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897013/ Sample Accession: GSM3897013 ID: 303897013 10928. 274_neuronal_206_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897012/ Sample Accession: GSM3897012 ID: 303897012 10929. 273_neuronal_206_1205.4_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897011/ Sample Accession: GSM3897011 ID: 303897011 10930. 272_neuronal_179_0524.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897010/ Sample Accession: GSM3897010 ID: 303897010 10931. 254_whole_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897009/ Sample Accession: GSM3897009 ID: 303897009 10932. 253_whole_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897008/ Sample Accession: GSM3897008 ID: 303897008 10933. 252_whole_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897007/ Sample Accession: GSM3897007 ID: 303897007 10934. 249_glial_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897006/ Sample Accession: GSM3897006 ID: 303897006 10935. 248_glial_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897005/ Sample Accession: GSM3897005 ID: 303897005 10936. 247_glial_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897004/ Sample Accession: GSM3897004 ID: 303897004 10937. 246_neuronal_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897003/ Sample Accession: GSM3897003 ID: 303897003 10938. 245_neuronal_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897002/ Sample Accession: GSM3897002 ID: 303897002 10939. 244_neuronal_140_hfb.2 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897001/ Sample Accession: GSM3897001 ID: 303897001 10940. 227_neuronal_220_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3897nnn/GSM3897000/ Sample Accession: GSM3897000 ID: 303897000 10941. 222_glial_220_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896999/ Sample Accession: GSM3896999 ID: 303896999 10942. 221_glial_220_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896998/ Sample Accession: GSM3896998 ID: 303896998 10943. 220_neuronal_220_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896997/ Sample Accession: GSM3896997 ID: 303896997 10944. 219_neuronal_220_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896996/ Sample Accession: GSM3896996 ID: 303896996 10945. 216_glial_394_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896995/ Sample Accession: GSM3896995 ID: 303896995 10946. 215_glial_394_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896994/ Sample Accession: GSM3896994 ID: 303896994 10947. 214_neuronal_394_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896993/ Sample Accession: GSM3896993 ID: 303896993 10948. 213_neuronal_394_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896992/ Sample Accession: GSM3896992 ID: 303896992 10949. 210_glial_394_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896991/ Sample Accession: GSM3896991 ID: 303896991 10950. 209_glial_394_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896990/ Sample Accession: GSM3896990 ID: 303896990 10951. 208_neuronal_394_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896989/ Sample Accession: GSM3896989 ID: 303896989 10952. 207_neuronal_394_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896988/ Sample Accession: GSM3896988 ID: 303896988 10953. 204_glial_532_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896987/ Sample Accession: GSM3896987 ID: 303896987 10954. 203_glial_532_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896986/ Sample Accession: GSM3896986 ID: 303896986 10955. 202_neuronal_532_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896985/ Sample Accession: GSM3896985 ID: 303896985 10956. 201_neuronal_532_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896984/ Sample Accession: GSM3896984 ID: 303896984 10957. 198_glial_532_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896983/ Sample Accession: GSM3896983 ID: 303896983 10958. 197_glial_532_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896982/ Sample Accession: GSM3896982 ID: 303896982 10959. 196_neuronal_532_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896981/ Sample Accession: GSM3896981 ID: 303896981 10960. 195_neuronal_532_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896980/ Sample Accession: GSM3896980 ID: 303896980 10961. 192_glial_595_6593.8_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896979/ Sample Accession: GSM3896979 ID: 303896979 10962. 191_glial_595_6593.8_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896978/ Sample Accession: GSM3896978 ID: 303896978 10963. 190_neuronal_595_6593.8_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896977/ Sample Accession: GSM3896977 ID: 303896977 10964. 189_neuronal_595_6593.8_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896976/ Sample Accession: GSM3896976 ID: 303896976 10965. 180_glial_588_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896975/ Sample Accession: GSM3896975 ID: 303896975 10966. 179_glial_588_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896974/ Sample Accession: GSM3896974 ID: 303896974 10967. 178_neuronal_588_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896973/ Sample Accession: GSM3896973 ID: 303896973 10968. 177_neuronal_588_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896972/ Sample Accession: GSM3896972 ID: 303896972 10969. 174_glial_107_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896971/ Sample Accession: GSM3896971 ID: 303896971 10970. 173_glial_107_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896970/ Sample Accession: GSM3896970 ID: 303896970 10971. 172_neuronal_107_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896969/ Sample Accession: GSM3896969 ID: 303896969 10972. 171_neuronal_107_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896968/ Sample Accession: GSM3896968 ID: 303896968 10973. 168_glial_114_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896967/ Sample Accession: GSM3896967 ID: 303896967 10974. 167_glial_114_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896966/ Sample Accession: GSM3896966 ID: 303896966 10975. 166_neuronal_114_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896965/ Sample Accession: GSM3896965 ID: 303896965 10976. 165_neuronal_114_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896964/ Sample Accession: GSM3896964 ID: 303896964 10977. 162_glial_491_6593.8_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896963/ Sample Accession: GSM3896963 ID: 303896963 10978. 161_glial_491_6593.8_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896962/ Sample Accession: GSM3896962 ID: 303896962 10979. 130_ipsc_0_8858.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896961/ Sample Accession: GSM3896961 ID: 303896961 10980. 129_ipsc_0_2242.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896960/ Sample Accession: GSM3896960 ID: 303896960 10981. 124_ipsc_0_8858.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896959/ Sample Accession: GSM3896959 ID: 303896959 10982. 123_ipsc_0_8858.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896958/ Sample Accession: GSM3896958 ID: 303896958 10983. 122_ipsc_0_8858.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896957/ Sample Accession: GSM3896957 ID: 303896957 10984. 121_ipsc_0_8858.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896956/ Sample Accession: GSM3896956 ID: 303896956 10985. 120_ipsc_0_2242.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896955/ Sample Accession: GSM3896955 ID: 303896955 10986. 119_ipsc_0_2242.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896954/ Sample Accession: GSM3896954 ID: 303896954 10987. 118_ipsc_0_2242.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896953/ Sample Accession: GSM3896953 ID: 303896953 10988. 117_ipsc_0_2242.1 Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896952/ Sample Accession: GSM3896952 ID: 303896952 10989. 115_whole_25_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896951/ Sample Accession: GSM3896951 ID: 303896951 10990. 114_whole_25_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896950/ Sample Accession: GSM3896950 ID: 303896950 10991. 113_whole_25_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896949/ Sample Accession: GSM3896949 ID: 303896949 10992. 112_whole_25_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896948/ Sample Accession: GSM3896948 ID: 303896948 10993. 111_whole_25_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896947/ Sample Accession: GSM3896947 ID: 303896947 10994. 110_whole_25_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896946/ Sample Accession: GSM3896946 ID: 303896946 10995. 109_whole_25_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896945/ Sample Accession: GSM3896945 ID: 303896945 10996. 108_whole_25_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896944/ Sample Accession: GSM3896944 ID: 303896944 10997. 107_whole_25_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896943/ Sample Accession: GSM3896943 ID: 303896943 10998. 101_whole_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896942/ Sample Accession: GSM3896942 ID: 303896942 10999. 100_whole_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896941/ Sample Accession: GSM3896941 ID: 303896941 11000. 099_whole_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896940/ Sample Accession: GSM3896940 ID: 303896940 11001. 098_neuronal_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896939/ Sample Accession: GSM3896939 ID: 303896939 11002. 097_glial_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896938/ Sample Accession: GSM3896938 ID: 303896938 11003. 096_glial_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896937/ Sample Accession: GSM3896937 ID: 303896937 11004. 095_neuronal_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896936/ Sample Accession: GSM3896936 ID: 303896936 11005. 094_whole_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896935/ Sample Accession: GSM3896935 ID: 303896935 11006. 093_neuronal_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896934/ Sample Accession: GSM3896934 ID: 303896934 11007. 089_whole_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896933/ Sample Accession: GSM3896933 ID: 303896933 11008. 088_whole_140_hfb.1 Organism: Homo sapiens Source name: hfb Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896932/ Sample Accession: GSM3896932 ID: 303896932 11009. 056_neuronal_79_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896931/ Sample Accession: GSM3896931 ID: 303896931 11010. 055_neuronal_434_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896930/ Sample Accession: GSM3896930 ID: 303896930 11011. 054_neuronal_434_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896929/ Sample Accession: GSM3896929 ID: 303896929 11012. 053_neuronal_434_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896928/ Sample Accession: GSM3896928 ID: 303896928 11013. 052_neuronal_371_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896927/ Sample Accession: GSM3896927 ID: 303896927 11014. 046_glial_79_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896926/ Sample Accession: GSM3896926 ID: 303896926 11015. 045_glial_79_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896925/ Sample Accession: GSM3896925 ID: 303896925 11016. 043_neuronal_104_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896924/ Sample Accession: GSM3896924 ID: 303896924 11017. 042_neuronal_104_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896923/ Sample Accession: GSM3896923 ID: 303896923 11018. 041_neuronal_104_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896922/ Sample Accession: GSM3896922 ID: 303896922 11019. 040_glial_188_1205.4_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896921/ Sample Accession: GSM3896921 ID: 303896921 11020. 039_glial_104_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896920/ Sample Accession: GSM3896920 ID: 303896920 11021. 038_glial_104_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896919/ Sample Accession: GSM3896919 ID: 303896919 11022. 037_glial_104_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896918/ Sample Accession: GSM3896918 ID: 303896918 11023. 036_neuronal_188_1205.4_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896917/ Sample Accession: GSM3896917 ID: 303896917 11024. 035_neuronal_104_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896916/ Sample Accession: GSM3896916 ID: 303896916 11025. 034_neuronal_230_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896915/ Sample Accession: GSM3896915 ID: 303896915 11026. 033_neuronal_230_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896914/ Sample Accession: GSM3896914 ID: 303896914 11027. 032_neuronal_230_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896913/ Sample Accession: GSM3896913 ID: 303896913 11028. 031_neuronal_230_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896912/ Sample Accession: GSM3896912 ID: 303896912 11029. 030_glial_104_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896911/ Sample Accession: GSM3896911 ID: 303896911 11030. 027_glial_230_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896910/ Sample Accession: GSM3896910 ID: 303896910 11031. 026_glial_230_2242.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896909/ Sample Accession: GSM3896909 ID: 303896909 11032. 011_glial_79_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896908/ Sample Accession: GSM3896908 ID: 303896908 11033. 010_glial_79_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896907/ Sample Accession: GSM3896907 ID: 303896907 11034. 006_neuronal_79_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896906/ Sample Accession: GSM3896906 ID: 303896906 11035. 005_neuronal_79_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896905/ Sample Accession: GSM3896905 ID: 303896905 11036. 004_neuronal_79_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896904/ Sample Accession: GSM3896904 ID: 303896904 11037. 003_neuronal_371_8858.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896903/ Sample Accession: GSM3896903 ID: 303896903 11038. 002_neuronal_371_8858.1_hCS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896902/ Sample Accession: GSM3896902 ID: 303896902 11039. 001_neuronal_371_2242.1_hSS Organism: Homo sapiens Source name: forebrain spheroid Platform: GPL21697 Series: GSE132403 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3896nnn/GSM3896901/ Sample Accession: GSM3896901 ID: 303896901 11040. FBXL19fl_ES_RA72hrs_rep4_ATACseq Organism: Mus musculus Source name: Mouse embryonic stem cells, control, retinoic-acid treated (72hr RA), ATAC-seq Platform: GPL19057 Series: GSE136424 GSE141919 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4216nnn/GSM4216328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7354507 Sample Accession: GSM4216328 ID: 304216328 11041. FBXL19fl_ES_RA72hrs_rep3_ATACseq Organism: Mus musculus Source name: Mouse embryonic stem cells, control, retinoic-acid treated (72hr RA), ATAC-seq Platform: GPL19057 Series: GSE136424 GSE141919 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4216nnn/GSM4216327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7354506 Sample Accession: GSM4216327 ID: 304216327 11042. FBXL19fl_ES_RA72hrs_rep2_ATACseq Organism: Mus musculus Source name: Mouse embryonic stem cells, control, retinoic-acid treated (72hr RA), ATAC-seq Platform: GPL19057 Series: GSE136424 GSE141919 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4216nnn/GSM4216326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7354505 Sample Accession: GSM4216326 ID: 304216326 11043. FBXL19fl_ES_RA72hrs_rep1_ATACseq Organism: Mus musculus Source name: Mouse embryonic stem cells, control, retinoic-acid treated (72hr RA), ATAC-seq Platform: GPL19057 Series: GSE136424 GSE141919 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4216nnn/GSM4216325/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7354504 Sample Accession: GSM4216325 ID: 304216325 11044. FBXL19fl_ES_UNT_rep4_ATACseq Organism: Mus musculus Source name: Mouse embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE136424 GSE141919 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4216nnn/GSM4216324/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7354503 Sample Accession: GSM4216324 ID: 304216324 11045. FBXL19fl_ES_UNT_rep3_ATACseq Organism: Mus musculus Source name: Mouse embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE136424 GSE141919 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4216nnn/GSM4216323/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7354502 Sample Accession: GSM4216323 ID: 304216323 11046. FBXL19fl_ES_UNT_rep2_ATACseq Organism: Mus musculus Source name: Mouse embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE136424 GSE141919 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4216nnn/GSM4216322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7354501 Sample Accession: GSM4216322 ID: 304216322 11047. FBXL19fl_ES_UNT_rep1_ATACseq Organism: Mus musculus Source name: Mouse embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE136424 GSE141919 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4216nnn/GSM4216321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7354500 Sample Accession: GSM4216321 ID: 304216321 11048. AM ATAC-seq DBA2J rep2 Organism: Mus musculus Source name: alveolar macrophages Platform: GPL19057 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817491 Sample Accession: GSM4066520 ID: 304066520 11049. AM ATAC-seq DBA2J rep1 Organism: Mus musculus Source name: alveolar macrophages Platform: GPL19057 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817490 Sample Accession: GSM4066519 ID: 304066519 11050. pMo ATAC-seq C57BL6J rep2 Organism: Mus musculus Source name: patrolling macrophages Platform: GPL19057 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817489 Sample Accession: GSM4066518 ID: 304066518 11051. pMo ATAC-seq C57BL6J rep1 Organism: Mus musculus Source name: patrolling macrophages Platform: GPL19057 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817488 Sample Accession: GSM4066517 ID: 304066517 11052. AM ATAC-seq C57BL6J rep2 Organism: Mus musculus Source name: alveolar macrophages Platform: GPL19057 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817483 Sample Accession: GSM4066512 ID: 304066512 11053. AM ATAC-seq C57BL6J rep1 Organism: Mus musculus Source name: alveolar macrophages Platform: GPL19057 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817482 Sample Accession: GSM4066511 ID: 304066511 11054. WT FoxA2 Negative FoxA2-RFP Rep 2 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459927 Sample Accession: GSM3949103 ID: 303949103 11055. WT FoxA2 Negative FoxA2-RFP Rep 1 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459926 Sample Accession: GSM3949102 ID: 303949102 11056. WT FoxA2 Middle FoxA2-RFP Rep 2 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459925 Sample Accession: GSM3949101 ID: 303949101 11057. WT FoxA2 Middle FoxA2-RFP Rep 1 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459924 Sample Accession: GSM3949100 ID: 303949100 11058. WT FoxA2 High FoxA2-RFP Rep 2 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459923 Sample Accession: GSM3949099 ID: 303949099 11059. WT FoxA2 High FoxA2-RFP Rep 1 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459922 Sample Accession: GSM3949098 ID: 303949098 11060. Delta Helix Mutant FoxA2 Negative FoxA2-RFP Rep 2 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459921 Sample Accession: GSM3949097 ID: 303949097 11061. Delta Helix Mutant FoxA2 Negative FoxA2-RFP Rep 1 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459920 Sample Accession: GSM3949096 ID: 303949096 11062. Delta Helix Mutant FoxA2 Middle FoxA2-RFP Rep 3 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459919 Sample Accession: GSM3949095 ID: 303949095 11063. Delta Helix Mutant FoxA2 Middle FoxA2-RFP Rep 2 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459918 Sample Accession: GSM3949094 ID: 303949094 11064. Delta Helix Mutant FoxA2 High FoxA2-RFP Rep 2 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459917 Sample Accession: GSM3949093 ID: 303949093 11065. Delta Helix Mutant FoxA2 High FoxA2-RFP Rep 1 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134464 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459916 Sample Accession: GSM3949092 ID: 303949092 11066. WT FoxA2 Negative FoxA2-RFP Rep 3 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459915 Sample Accession: GSM3949091 ID: 303949091 11067. WT FoxA2 Negative FoxA2-RFP Rep 2 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459914 Sample Accession: GSM3949090 ID: 303949090 11068. WT FoxA2 Negative FoxA2-RFP Rep 1 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459913 Sample Accession: GSM3949089 ID: 303949089 11069. WT FoxA2 Middle FoxA2-RFP Rep 3 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459912 Sample Accession: GSM3949088 ID: 303949088 11070. WT FoxA2 Middle FoxA2-RFP Rep 2 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459911 Sample Accession: GSM3949087 ID: 303949087 11071. WT FoxA2 Middle FoxA2-RFP Rep 1 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459910 Sample Accession: GSM3949086 ID: 303949086 11072. WT FoxA2 High FoxA2-RFP Rep 3 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459909 Sample Accession: GSM3949085 ID: 303949085 11073. WT FoxA2 High FoxA2-RFP Rep 2 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459908 Sample Accession: GSM3949084 ID: 303949084 11074. WT FoxA2 High FoxA2-RFP Rep 1 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459907 Sample Accession: GSM3949083 ID: 303949083 11075. Delta Helix Mutant FoxA2 Negative FoxA2-RFP Rep 3 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459906 Sample Accession: GSM3949082 ID: 303949082 11076. Delta Helix Mutant FoxA2 Negative FoxA2-RFP Rep 2 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459905 Sample Accession: GSM3949081 ID: 303949081 11077. Delta Helix Mutant FoxA2 Negative FoxA2-RFP Rep 1 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459904 Sample Accession: GSM3949080 ID: 303949080 11078. Delta Helix Mutant FoxA2 Middle FoxA2-RFP Rep 3 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459903 Sample Accession: GSM3949079 ID: 303949079 11079. Delta Helix Mutant FoxA2 Middle FoxA2-RFP Rep 2 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459902 Sample Accession: GSM3949078 ID: 303949078 11080. Delta Helix Mutant FoxA2 Middle FoxA2-RFP Rep 1 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459901 Sample Accession: GSM3949077 ID: 303949077 11081. Delta Helix Mutant FoxA2 High FoxA2-RFP Rep 3 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459900 Sample Accession: GSM3949076 ID: 303949076 11082. Delta Helix Mutant FoxA2 High FoxA2-RFP Rep 2 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459899 Sample Accession: GSM3949075 ID: 303949075 11083. Delta Helix Mutant FoxA2 High FoxA2-RFP Rep 1 Organism: Mus musculus Source name: Mouse embryo E7.5 Platform: GPL19057 Series: GSE134463 GSE134465 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6459898 Sample Accession: GSM3949074 ID: 303949074 11084. pMo ATAC-seq DBA2J rep2 Organism: Mus musculus Source name: patrolling macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817497 Sample Accession: GSM4066526 ID: 304066526 11085. pMo ATAC-seq DBA2J rep1 Organism: Mus musculus Source name: patrolling macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817496 Sample Accession: GSM4066525 ID: 304066525 11086. iMo ATAC-seq DBA2J rep2 Organism: Mus musculus Source name: inflammatory macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817495 Sample Accession: GSM4066524 ID: 304066524 11087. iMo ATAC-seq DBA2J rep1 Organism: Mus musculus Source name: inflammatory macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817494 Sample Accession: GSM4066523 ID: 304066523 11088. IM ATAC-seq DBA2J rep2 Organism: Mus musculus Source name: interstital macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817493 Sample Accession: GSM4066522 ID: 304066522 11089. IM ATAC-seq DBA2J rep1 Organism: Mus musculus Source name: interstital macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817492 Sample Accession: GSM4066521 ID: 304066521 11090. iMo ATAC-seq C57BL6J rep2 Organism: Mus musculus Source name: inflammatory macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817487 Sample Accession: GSM4066516 ID: 304066516 11091. iMo ATAC-seq C57BL6J rep1 Organism: Mus musculus Source name: inflammatory macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817486 Sample Accession: GSM4066515 ID: 304066515 11092. IM ATAC-seq C57BL6J rep2 Organism: Mus musculus Source name: interstital macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817485 Sample Accession: GSM4066514 ID: 304066514 11093. IM ATAC-seq C57BL6J rep1 Organism: Mus musculus Source name: interstital macrophages Platform: GPL21103 Series: GSE136916 GSE137068 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6817484 Sample Accession: GSM4066513 ID: 304066513 11094. PBS PAM 2M CD45 2 biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: PBS PAM 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835113 Sample Accession: GSM3768098 ID: 303768098 11095. PBS PAM 2M CD45 2 biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: PBS PAM 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835112 Sample Accession: GSM3768097 ID: 303768097 11096. PBS MOCK 2M CD45 2 biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: PBS MOCK 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835111 Sample Accession: GSM3768096 ID: 303768096 11097. PBS MOCK 2M CD45 2 biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: PBS MOCK 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835110 Sample Accession: GSM3768095 ID: 303768095 11098. FLU PAM 2M CD45 2 biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: FLU PAM 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835109 Sample Accession: GSM3768094 ID: 303768094 11099. FLU PAM 2M CD45 2 biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: FLU PAM 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835108 Sample Accession: GSM3768093 ID: 303768093 11100. FLU PAM 2M CD45 1 biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: FLU PAM 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835107 Sample Accession: GSM3768092 ID: 303768092 11101. FLU PAM 2M CD45 1 biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: FLU PAM 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835106 Sample Accession: GSM3768091 ID: 303768091 11102. FLU MOCK 2M CD45 2 biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: FLU MOCK 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835105 Sample Accession: GSM3768090 ID: 303768090 11103. FLU MOCK 2M CD45 2 biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: FLU MOCK 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835104 Sample Accession: GSM3768089 ID: 303768089 11104. FLU MOCK 2M CD45 1 biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: FLU MOCK 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768088/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835103 Sample Accession: GSM3768088 ID: 303768088 11105. FLU MOCK 2M CD45 1 biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: FLU MOCK 2M CD45 Platform: GPL21103 Series: GSE120543 GSE131251 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3768nnn/GSM3768087/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5835102 Sample Accession: GSM3768087 ID: 303768087 11106. FLU PAM CD45 2 biological replicate 2 (ATAC-seq) Organism: Mus musculus Source name: FLU PAM CD45 2 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743087 Sample Accession: GSM3402741 ID: 303402741 11107. FLU PAM CD45 2 biological replicate 1 (ATAC-seq) Organism: Mus musculus Source name: FLU PAM CD45 2 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743086 Sample Accession: GSM3402740 ID: 303402740 11108. FLU PAM CD45 1 biological replicate 2 (ATAC-seq) Organism: Mus musculus Source name: FLU PAM CD45 1 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743085 Sample Accession: GSM3402739 ID: 303402739 11109. FLU PAM CD45 1 biological replicate 1 (ATAC-seq) Organism: Mus musculus Source name: FLU PAM CD45 1 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743084 Sample Accession: GSM3402738 ID: 303402738 11110. FLU MOCK CD45 2 biological replicate 2 (ATAC-seq) Organism: Mus musculus Source name: FLU MOCK CD45 2 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743083 Sample Accession: GSM3402737 ID: 303402737 11111. FLU MOCK CD45 2 biological replicate 1 (ATAC-seq) Organism: Mus musculus Source name: FLU MOCK CD45 2 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743082 Sample Accession: GSM3402736 ID: 303402736 11112. FLU MOCK CD45 1 biological replicate 2 (ATAC-seq) Organism: Mus musculus Source name: FLU MOCK CD45 1 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743081 Sample Accession: GSM3402735 ID: 303402735 11113. FLU MOCK CD45 1 biological replicate 1 (ATAC-seq) Organism: Mus musculus Source name: FLU MOCK CD45 1 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743080 Sample Accession: GSM3402734 ID: 303402734 11114. PBS PAM CD45 2 biological replicate 2 (ATAC-seq) Organism: Mus musculus Source name: PBS PAM CD45 2 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743079 Sample Accession: GSM3402733 ID: 303402733 11115. PBS PAM CD45 2 biological replicate 1 (ATAC-seq) Organism: Mus musculus Source name: PBS PAM CD45 2 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743078 Sample Accession: GSM3402732 ID: 303402732 11116. PBS MOCK CD45 2 biological replicate 2 (ATAC-seq) Organism: Mus musculus Source name: PBS MOCK CD45 2 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743077 Sample Accession: GSM3402731 ID: 303402731 11117. PBS MOCK CD45 2 biological replicate 1 (ATAC-seq) Organism: Mus musculus Source name: PBS MOCK CD45 2 Platform: GPL21103 Series: GSE120540 GSE120543 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4743076 Sample Accession: GSM3402730 ID: 303402730 11118. 48h_2DF_Slug Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887623 Sample Accession: GSM3813981 ID: 303813981 11119. DMSO_2F_H3K27ac Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887622 Sample Accession: GSM3813980 ID: 303813980 11120. DMSO_2DF_YAP Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887621 Sample Accession: GSM3813979 ID: 303813979 11121. DMSO_2DF_TEAD4 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887620 Sample Accession: GSM3813978 ID: 303813978 11122. DMSO_2DF_Slug Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887619 Sample Accession: GSM3813977 ID: 303813977 11123. DMSO_1DF_YAP Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887618 Sample Accession: GSM3813976 ID: 303813976 11124. DMSO_1DF_TEAD4 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887617 Sample Accession: GSM3813975 ID: 303813975 11125. DMSO_1DF_Slug Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813974/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887616 Sample Accession: GSM3813974 ID: 303813974 11126. 48h_2F_H3K27ac Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813973/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887615 Sample Accession: GSM3813973 ID: 303813973 11127. 48h_2DF_YAP Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887614 Sample Accession: GSM3813972 ID: 303813972 11128. 48h_2DF_TEAD4 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813971/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887613 Sample Accession: GSM3813971 ID: 303813971 11129. 48h_1F_H3K27ac Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887612 Sample Accession: GSM3813970 ID: 303813970 11130. 48h_1DF_YAP Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813969/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887611 Sample Accession: GSM3813969 ID: 303813969 11131. 48h_1DF_TEAD4 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887610 Sample Accession: GSM3813968 ID: 303813968 11132. 48h_1DF_Slug Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887609 Sample Accession: GSM3813967 ID: 303813967 11133. rebound_ATAC_3 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887608 Sample Accession: GSM3813966 ID: 303813966 11134. rebound_ATAC_2 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887607 Sample Accession: GSM3813965 ID: 303813965 11135. rebound_ATAC_1 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887606 Sample Accession: GSM3813964 ID: 303813964 11136. osimertinibplustrametinib_ATAC_3 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887605 Sample Accession: GSM3813963 ID: 303813963 11137. osimertinibplustrametinib_ATAC_2 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887604 Sample Accession: GSM3813962 ID: 303813962 11138. osimertinibplustrametinib_ATAC_1 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887603 Sample Accession: GSM3813961 ID: 303813961 11139. osimertinib_ATAC_3 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887602 Sample Accession: GSM3813960 ID: 303813960 11140. osimertinib_ATAC_2 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887601 Sample Accession: GSM3813959 ID: 303813959 11141. osimertinib_ATAC_1 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887600 Sample Accession: GSM3813958 ID: 303813958 11142. DMSO_ATAC_3 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887599 Sample Accession: GSM3813957 ID: 303813957 11143. DMSO_ATAC_2 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887598 Sample Accession: GSM3813956 ID: 303813956 11144. DMSO_ATAC_1 Organism: Homo sapiens Source name: PC9 Platform: GPL18573 Series: GSE131604 GSE131687 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3813nnn/GSM3813955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5887597 Sample Accession: GSM3813955 ID: 303813955 11145. ATAC-seq_normal-fibroblast-rep 2 Organism: Homo sapiens Source name: Normal fibroblast cell strain N102 Platform: GPL18573 Series: GSE125022 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3561nnn/GSM3561363/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5246762 Sample Accession: GSM3561363 ID: 303561363 11146. ATAC-seq_normal-fibroblast-rep 1 Organism: Homo sapiens Source name: Normal fibroblast cell strain N102 Platform: GPL18573 Series: GSE125022 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3561nnn/GSM3561362/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5246761 Sample Accession: GSM3561362 ID: 303561362 11147. ATAC-seq_keloid-fibroblast-rep2 Organism: Homo sapiens Source name: Keloid fibroblast cell strain K119 Platform: GPL18573 Series: GSE125022 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3561nnn/GSM3561361/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5246760 Sample Accession: GSM3561361 ID: 303561361 11148. ATAC-seq_keloid-fibroblast-rep1 Organism: Homo sapiens Source name: Keloid fibroblast cell strain K119 Platform: GPL18573 Series: GSE125022 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3561nnn/GSM3561360/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5246759 Sample Accession: GSM3561360 ID: 303561360 11149. RNA-seq_normal-fibroblast-rep 2 Organism: Homo sapiens Source name: Normal fibroblast cell strain N102 Platform: GPL18573 Series: GSE125022 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5246758 Sample Accession: GSM3561359 ID: 303561359 11150. RNA-seq_normal-fibroblast-rep 1 Organism: Homo sapiens Source name: Normal fibroblast cell strain N102 Platform: GPL18573 Series: GSE125022 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5246757 Sample Accession: GSM3561358 ID: 303561358 11151. RNA-seq_keloid-fibroblast-rep2 Organism: Homo sapiens Source name: Keloid fibroblast cell strain K119 Platform: GPL18573 Series: GSE125022 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5246756 Sample Accession: GSM3561357 ID: 303561357 11152. RNA-seq_keloid-fibroblast-rep1 Organism: Homo sapiens Source name: Keloid fibroblast cell strain K119 Platform: GPL18573 Series: GSE125022 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5246755 Sample Accession: GSM3561356 ID: 303561356 11153. ATAC-seq_Suspension rep3 Organism: Homo sapiens Source name: AML_4_10Suspension_3 Platform: GPL18573 Series: GSE124730 GSE124967 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5242676 Sample Accession: GSM3560277 ID: 303560277 11154. ATAC-seq_Suspension rep2 Organism: Homo sapiens Source name: AML_4_10Suspension_2 Platform: GPL18573 Series: GSE124730 GSE124967 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5242675 Sample Accession: GSM3560276 ID: 303560276 11155. ATAC-seq_Suspension rep1 Organism: Homo sapiens Source name: AML_4_10Suspension_1 Platform: GPL18573 Series: GSE124730 GSE124967 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5242674 Sample Accession: GSM3560275 ID: 303560275 11156. ATAC-seq_Adherent rep3 Organism: Homo sapiens Source name: AML_4_10Adherent_3 Platform: GPL18573 Series: GSE124730 GSE124967 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5242673 Sample Accession: GSM3560274 ID: 303560274 11157. ATAC-seq_Adherent rep2 Organism: Homo sapiens Source name: AML_4_10Adherent_2 Platform: GPL18573 Series: GSE124730 GSE124967 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5242672 Sample Accession: GSM3560273 ID: 303560273 11158. ATAC-seq_Adherent rep1 Organism: Homo sapiens Source name: AML_4_10Adherent_1 Platform: GPL18573 Series: GSE124730 GSE124967 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5242671 Sample Accession: GSM3560272 ID: 303560272 11159. ATAC-seq_KO_Rep4 Organism: Mus musculus Source name: Liver Platform: GPL13112 Series: GSE133166 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6183174 Sample Accession: GSM3901311 ID: 303901311 11160. ATAC-seq_KO_Rep3 Organism: Mus musculus Source name: Liver Platform: GPL13112 Series: GSE133166 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6183173 Sample Accession: GSM3901310 ID: 303901310 11161. ATAC-seq_KO_Rep2 Organism: Mus musculus Source name: Liver Platform: GPL13112 Series: GSE133166 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6183172 Sample Accession: GSM3901309 ID: 303901309 11162. ATAC-seq_KO_Rep1 Organism: Mus musculus Source name: Liver Platform: GPL13112 Series: GSE133166 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6183171 Sample Accession: GSM3901308 ID: 303901308 11163. ATAC-seq_WT_Rep4 Organism: Mus musculus Source name: Liver Platform: GPL13112 Series: GSE133166 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6183170 Sample Accession: GSM3901307 ID: 303901307 11164. ATAC-seq_WT_Rep3 Organism: Mus musculus Source name: Liver Platform: GPL13112 Series: GSE133166 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6183169 Sample Accession: GSM3901306 ID: 303901306 11165. ATAC-seq_WT_Rep2 Organism: Mus musculus Source name: Liver Platform: GPL13112 Series: GSE133166 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6183168 Sample Accession: GSM3901305 ID: 303901305 11166. ATAC-seq_WT_Rep1 Organism: Mus musculus Source name: Liver Platform: GPL13112 Series: GSE133166 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3901nnn/GSM3901304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6183167 Sample Accession: GSM3901304 ID: 303901304 11167. ATAC-seq_Bcat_Cultured_R2 Organism: Mus musculus Source name: 8-day primary cultures of beta-catenin stabilized puromycin-purified brain ECs Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141285 Sample Accession: GSM4160555 ID: 304160555 11168. ATAC-seq_Bcat_Cultured_R1 Organism: Mus musculus Source name: 8-day primary cultures of beta-catenin stabilized puromycin-purified brain ECs Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141284 Sample Accession: GSM4160554 ID: 304160554 11169. ATAC-seq_WT_Cultured_R6 Organism: Mus musculus Source name: 8-day primary cultures of puromycin-purified brain ECs Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141283 Sample Accession: GSM4160553 ID: 304160553 11170. ATAC-seq_WT_Cultured_R5 Organism: Mus musculus Source name: 8-day primary cultures of puromycin-purified brain ECs Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141282 Sample Accession: GSM4160552 ID: 304160552 11171. ATAC-seq_WT_Cultured_R4 Organism: Mus musculus Source name: 8-day primary cultures of puromycin-purified brain ECs Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141281 Sample Accession: GSM4160551 ID: 304160551 11172. ATAC-seq_WT_Cultured_R3 Organism: Mus musculus Source name: 8-day primary cultures of puromycin-purified brain ECs Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141280 Sample Accession: GSM4160550 ID: 304160550 11173. ATAC-seq_WT_Cultured_R2 Organism: Mus musculus Source name: 8-day primary cultures of puromycin-purified brain ECs Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141279 Sample Accession: GSM4160549 ID: 304160549 11174. ATAC-seq_WT_Cultured_R1 Organism: Mus musculus Source name: 8-day primary cultures of puromycin-purified brain ECs Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141278 Sample Accession: GSM4160548 ID: 304160548 11175. ATAC-seq_Adult_Brain_GFPpos_R2 Organism: Mus musculus Source name: Adult GFP-positive sorted cells from brain Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141277 Sample Accession: GSM4160547 ID: 304160547 11176. ATAC-seq_Adult_Brain_GFPpos_R1 Organism: Mus musculus Source name: Adult GFP-positive sorted cells from brain Platform: GPL19057 Series: GSE118731 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4160nnn/GSM4160546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141276 Sample Accession: GSM4160546 ID: 304160546 11177. ATAC-seq_Adult_Cerebrum_GFPpos_R2 Organism: Mus musculus Source name: Adult GFP-positive sorted cells from cerebrum Platform: GPL19057 Series: GSE118731 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141275 Sample Accession: GSM4160545 ID: 304160545 11178. ATAC-seq_Adult_Cerebrum_GFPpos_R1 Organism: Mus musculus Source name: Adult GFP-positive sorted cells from cerebrum Platform: GPL19057 Series: GSE118731 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141274 Sample Accession: GSM4160544 ID: 304160544 11179. ATAC-seq_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL16417 Series: GSE120393 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4734102 Sample Accession: GSM3399696 ID: 303399696 11180. ATAC-seq_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL16417 Series: GSE120393 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4734101 Sample Accession: GSM3399695 ID: 303399695 11181. ATAC-seq-BM-Sca-neg-#3 Organism: Mus musculus Source name: Steady-state bone marrow Platform: GPL19057 Series: GSE139336 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7051470 Sample Accession: GSM4138351 ID: 304138351 11182. ATAC-seq-BM-Sca-neg-#2 Organism: Mus musculus Source name: Steady-state bone marrow Platform: GPL19057 Series: GSE139336 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7051469 Sample Accession: GSM4138350 ID: 304138350 11183. ATAC-seq-BM-Sca-neg-#1 Organism: Mus musculus Source name: Steady-state bone marrow Platform: GPL19057 Series: GSE139336 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7051468 Sample Accession: GSM4138349 ID: 304138349 11184. ATAC-seq-Spleen-Sca-neg-#3 Organism: Mus musculus Source name: Spleen day 8 after lethal irradiation and transplantation of unfractionated bone marrow cells Platform: GPL19057 Series: GSE139336 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7051467 Sample Accession: GSM4138348 ID: 304138348 11185. ATAC-seq-Spleen-Sca-neg-#2 Organism: Mus musculus Source name: Spleen day 8 after lethal irradiation and transplantation of unfractionated bone marrow cells Platform: GPL19057 Series: GSE139336 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7051466 Sample Accession: GSM4138347 ID: 304138347 11186. ATAC-seq-Spleen-Sca-neg-#1 Organism: Mus musculus Source name: Spleen day 8 after lethal irradiation and transplantation of unfractionated bone marrow cells Platform: GPL19057 Series: GSE139336 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7051465 Sample Accession: GSM4138346 ID: 304138346 11187. Treg_Klrg1+GFP+_4 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1+GFP+_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802492 Sample Accession: GSM3754914 ID: 303754914 11188. Treg_Klrg1+GFP+_3 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1+GFP+_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802491 Sample Accession: GSM3754913 ID: 303754913 11189. Treg_Klrg1+GFP+_2 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1+GFP+_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802490 Sample Accession: GSM3754912 ID: 303754912 11190. Treg_Klrg1+GFP+_1 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1+GFP+_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802489 Sample Accession: GSM3754911 ID: 303754911 11191. Treg_Klrg1-GFP+_4 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1-GFP+_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754910/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802488 Sample Accession: GSM3754910 ID: 303754910 11192. Treg_Klrg1-GFP+_3 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1-GFP+_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754909/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802487 Sample Accession: GSM3754909 ID: 303754909 11193. Treg_Klrg1-GFP+_2 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1-GFP+_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754908/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802486 Sample Accession: GSM3754908 ID: 303754908 11194. Treg_Klrg1-GFP+_1 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1-GFP+_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754907/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802485 Sample Accession: GSM3754907 ID: 303754907 11195. Treg_Klrg1-GFP-_4 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1-GFP-_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754906/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802484 Sample Accession: GSM3754906 ID: 303754906 11196. Treg_Klrg1-GFP-_3 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1-GFP-_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802483 Sample Accession: GSM3754905 ID: 303754905 11197. Treg_Klrg1-GFP-_2 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1-GFP-_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802482 Sample Accession: GSM3754904 ID: 303754904 11198. Treg_Klrg1-GFP-_1 [ATAC-seq] Organism: Mus musculus Source name: Treg_Klrg1-GFP-_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802481 Sample Accession: GSM3754903 ID: 303754903 11199. Skin_Treg_4dup_2 [ATAC-seq] Organism: Mus musculus Source name: Skin_Treg_4dup_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802480 Sample Accession: GSM3754902 ID: 303754902 11200. Skin_Treg_3_2 [ATAC-seq] Organism: Mus musculus Source name: Skin_Treg_3_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802479 Sample Accession: GSM3754901 ID: 303754901 11201. Skin_Treg_2_2 [ATAC-seq] Organism: Mus musculus Source name: Skin_Treg_2_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802478 Sample Accession: GSM3754900 ID: 303754900 11202. Skin_Tconv_4dup_2 [ATAC-seq] Organism: Mus musculus Source name: Skin_Tconv_4dup_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802477 Sample Accession: GSM3754899 ID: 303754899 11203. Skin_Tconv_3_2 [ATAC-seq] Organism: Mus musculus Source name: Skin_Tconv_3_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802476 Sample Accession: GSM3754898 ID: 303754898 11204. Skin_Tconv_2_2 [ATAC-seq] Organism: Mus musculus Source name: Skin_Tconv_2_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802475 Sample Accession: GSM3754897 ID: 303754897 11205. Lung_Treg_4 [ATAC-seq] Organism: Mus musculus Source name: Lung_Treg_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802474 Sample Accession: GSM3754896 ID: 303754896 11206. Lung_Treg_3 [ATAC-seq] Organism: Mus musculus Source name: Lung_Treg_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802473 Sample Accession: GSM3754895 ID: 303754895 11207. Lung_Treg_2 [ATAC-seq] Organism: Mus musculus Source name: Lung_Treg_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802472 Sample Accession: GSM3754894 ID: 303754894 11208. Lung_Treg_1 [ATAC-seq] Organism: Mus musculus Source name: Lung_Treg_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802471 Sample Accession: GSM3754893 ID: 303754893 11209. Lung_Tconv_4 [ATAC-seq] Organism: Mus musculus Source name: Lung_Tconv_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802470 Sample Accession: GSM3754892 ID: 303754892 11210. Lung_Tconv_3 [ATAC-seq] Organism: Mus musculus Source name: Lung_Tconv_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802469 Sample Accession: GSM3754891 ID: 303754891 11211. Lung_Tconv_2 [ATAC-seq] Organism: Mus musculus Source name: Lung_Tconv_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802468 Sample Accession: GSM3754890 ID: 303754890 11212. Lung_Tconv_1 [ATAC-seq] Organism: Mus musculus Source name: Lung_Tconv_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802467 Sample Accession: GSM3754889 ID: 303754889 11213. LN_Naive_Treg_4 [ATAC-seq] Organism: Mus musculus Source name: LN_Naive_Treg_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754888/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802466 Sample Accession: GSM3754888 ID: 303754888 11214. LN_Naive_Treg_3 [ATAC-seq] Organism: Mus musculus Source name: LN_Naive_Treg_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802465 Sample Accession: GSM3754887 ID: 303754887 11215. LN_Naive_Treg_2 [ATAC-seq] Organism: Mus musculus Source name: LN_Naive_Treg_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754886/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802464 Sample Accession: GSM3754886 ID: 303754886 11216. LN_Naive_Treg_1 [ATAC-seq] Organism: Mus musculus Source name: LN_Naive_Treg_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802463 Sample Accession: GSM3754885 ID: 303754885 11217. LN_Mem_Treg_4 [ATAC-seq] Organism: Mus musculus Source name: LN_Mem_Treg_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802525 Sample Accession: GSM3754884 ID: 303754884 11218. LN_Mem_Treg_3 [ATAC-seq] Organism: Mus musculus Source name: LN_Mem_Treg_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802524 Sample Accession: GSM3754883 ID: 303754883 11219. LN_Mem_Treg_2 [ATAC-seq] Organism: Mus musculus Source name: LN_Mem_Treg_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802523 Sample Accession: GSM3754882 ID: 303754882 11220. LN_Mem_Treg_1 [ATAC-seq] Organism: Mus musculus Source name: LN_Mem_Treg_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802522 Sample Accession: GSM3754881 ID: 303754881 11221. Fat_Treg_3 [ATAC-seq] Organism: Mus musculus Source name: Fat_Treg_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802521 Sample Accession: GSM3754880 ID: 303754880 11222. Fat_Treg_2 [ATAC-seq] Organism: Mus musculus Source name: Fat_Treg_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802520 Sample Accession: GSM3754879 ID: 303754879 11223. Fat_Treg_1 [ATAC-seq] Organism: Mus musculus Source name: Fat_Treg_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802519 Sample Accession: GSM3754878 ID: 303754878 11224. Fat_Tconv_4 [ATAC-seq] Organism: Mus musculus Source name: Fat_Tconv_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802518 Sample Accession: GSM3754877 ID: 303754877 11225. Fat_Tconv_3 [ATAC-seq] Organism: Mus musculus Source name: Fat_Tconv_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802517 Sample Accession: GSM3754876 ID: 303754876 11226. Fat_Tconv_2 [ATAC-seq] Organism: Mus musculus Source name: Fat_Tconv_2 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802516 Sample Accession: GSM3754875 ID: 303754875 11227. Fat_Tconv_1 [ATAC-seq] Organism: Mus musculus Source name: Fat_Tconv_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802515 Sample Accession: GSM3754874 ID: 303754874 11228. Colon_Treg_4 [ATAC-seq] Organism: Mus musculus Source name: Colon_Treg_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802514 Sample Accession: GSM3754873 ID: 303754873 11229. Colon_Treg_3 [ATAC-seq] Organism: Mus musculus Source name: Colon_Treg_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802513 Sample Accession: GSM3754872 ID: 303754872 11230. Colon_Treg_1 [ATAC-seq] Organism: Mus musculus Source name: Colon_Treg_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802512 Sample Accession: GSM3754871 ID: 303754871 11231. Colon_Tconv_4 [ATAC-seq] Organism: Mus musculus Source name: Colon_Tconv_4 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802511 Sample Accession: GSM3754870 ID: 303754870 11232. Colon_Tconv_3 [ATAC-seq] Organism: Mus musculus Source name: Colon_Tconv_3 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802510 Sample Accession: GSM3754869 ID: 303754869 11233. Colon_Tconv_1 [ATAC-seq] Organism: Mus musculus Source name: Colon_Tconv_1 Platform: GPL21103 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802509 Sample Accession: GSM3754868 ID: 303754868 11234. Lung_Klrg1-ST2- Treg_3 [ATAC-Seq] Organism: Mus musculus Source name: lung Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4029nnn/GSM4029688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6708429 Sample Accession: GSM4029688 ID: 304029688 11235. Lung_Klrg1-ST2- Treg_2 [ATAC-Seq] Organism: Mus musculus Source name: lung Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4029nnn/GSM4029687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6708428 Sample Accession: GSM4029687 ID: 304029687 11236. Lung_Klrg1-ST2- Treg_1 [ATAC-Seq] Organism: Mus musculus Source name: lung Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4029nnn/GSM4029686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6708427 Sample Accession: GSM4029686 ID: 304029686 11237. Treg_R7_IL-2_BATF-WT [ATAC-seq] Organism: Mus musculus Source name: Treg_R7_IL-2_BATF-WT Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802508 Sample Accession: GSM3754930 ID: 303754930 11238. Treg_R6_IL-4plusIL33_BATF-WT [ATAC-seq] Organism: Mus musculus Source name: Treg_R6_IL-4plusIL33_BATF-WT Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802507 Sample Accession: GSM3754929 ID: 303754929 11239. Treg_R5_IL-4plusIL33_BATF-WT [ATAC-seq] Organism: Mus musculus Source name: Treg_R5_IL-4plusIL33_BATF-WT Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802506 Sample Accession: GSM3754928 ID: 303754928 11240. Treg_R5_IL-4plusIL33_BATF-KO [ATAC-seq] Organism: Mus musculus Source name: Treg_R5_IL-4plusIL33_BATF-KO Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802505 Sample Accession: GSM3754927 ID: 303754927 11241. Treg_R5_IL-2_BATF-WT [ATAC-seq] Organism: Mus musculus Source name: Treg_R5_IL-2_BATF-WT Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802504 Sample Accession: GSM3754926 ID: 303754926 11242. Treg_R5_IL-2_BATF-KO [ATAC-seq] Organism: Mus musculus Source name: Treg_R5_IL-2_BATF-KO Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802503 Sample Accession: GSM3754925 ID: 303754925 11243. Treg_R4_IL-4plusIL33_BATF-KO [ATAC-seq] Organism: Mus musculus Source name: Treg_R4_IL-4plusIL33_BATF-KO Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802502 Sample Accession: GSM3754924 ID: 303754924 11244. Treg_R3_IL-4plusIL33_BATF-WT [ATAC-seq] Organism: Mus musculus Source name: Treg_R3_IL-4plusIL33_BATF-WT Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802501 Sample Accession: GSM3754923 ID: 303754923 11245. Treg_R3_IL-4plusIL33_BATF-KO [ATAC-seq] Organism: Mus musculus Source name: Treg_R3_IL-4plusIL33_BATF-KO Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802500 Sample Accession: GSM3754922 ID: 303754922 11246. Treg_R3_IL-2_BATF-WT [ATAC-seq] Organism: Mus musculus Source name: Treg_R3_IL-2_BATF-WT Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802499 Sample Accession: GSM3754921 ID: 303754921 11247. Treg_R3_IL-2_BATF-KO [ATAC-seq] Organism: Mus musculus Source name: Treg_R3_IL-2_BATF-KO Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802498 Sample Accession: GSM3754920 ID: 303754920 11248. Treg_R2_IL-4plusIL33_BATF-KO [ATAC-seq] Organism: Mus musculus Source name: Treg_R2_IL-4plusIL33_BATF-KO Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754919/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802497 Sample Accession: GSM3754919 ID: 303754919 11249. Treg_R2_IL-2_BATF-WT [ATAC-seq] Organism: Mus musculus Source name: Treg_R2_IL-2_BATF-WT Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802496 Sample Accession: GSM3754918 ID: 303754918 11250. Treg_R2_IL-2_BATF-KO [ATAC-seq] Organism: Mus musculus Source name: Treg_R2_IL-2_BATF-KO Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802495 Sample Accession: GSM3754917 ID: 303754917 11251. Treg_R1_IL-4plusIL33_BATF-WT [ATAC-seq] Organism: Mus musculus Source name: Treg_R1_IL-4plusIL33_BATF-WT Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802494 Sample Accession: GSM3754916 ID: 303754916 11252. Treg_R1_IL-2_BATF-KO [ATAC-seq] Organism: Mus musculus Source name: Treg_R1_IL-2_BATF-KO Platform: GPL21626 Series: GSE130825 GSE130884 FTP download: GEO (BED, BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3754nnn/GSM3754915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5802493 Sample Accession: GSM3754915 ID: 303754915 11253. ATAC-seq DEX 3 Organism: Mus musculus Source name: Naïve CD8 T cells Platform: GPL19057 Series: GSE136972 GSE136980 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6809273 Sample Accession: GSM4064143 ID: 304064143 11254. ATAC-seq DEX 2 Organism: Mus musculus Source name: Naïve CD8 T cells Platform: GPL19057 Series: GSE136972 GSE136980 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6809272 Sample Accession: GSM4064142 ID: 304064142 11255. ATAC-seq DEX 1 Organism: Mus musculus Source name: Naïve CD8 T cells Platform: GPL19057 Series: GSE136972 GSE136980 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6809271 Sample Accession: GSM4064141 ID: 304064141 11256. ATAC-seq Control 3 Organism: Mus musculus Source name: Naïve CD8 T cells Platform: GPL19057 Series: GSE136972 GSE136980 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6809270 Sample Accession: GSM4064140 ID: 304064140 11257. ATAC-seq Control 2 Organism: Mus musculus Source name: Naïve CD8 T cells Platform: GPL19057 Series: GSE136972 GSE136980 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6809269 Sample Accession: GSM4064139 ID: 304064139 11258. ATAC-seq Control 1 Organism: Mus musculus Source name: Naïve CD8 T cells Platform: GPL19057 Series: GSE136972 GSE136980 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4064nnn/GSM4064138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6809268 Sample Accession: GSM4064138 ID: 304064138 11259. ATAC-SEQ-MONO Organism: Homo sapiens Source name: PRIMARY-MONOCYTE Platform: GPL18573 Series: GSE136216 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4042nnn/GSM4042675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6763470 Sample Accession: GSM4042675 ID: 304042675 11260. ATAC-SEQ-MACRO Organism: Homo sapiens Source name: DIFFERENTIATED MACROPHAGE Platform: GPL18573 Series: GSE136216 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4042nnn/GSM4042674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6763469 Sample Accession: GSM4042674 ID: 304042674 11261. ATAC-Seq in Sox2 KO Mouse E16 Stomach Organism: Mus musculus Source name: Mouse E16 embryonic tissue Platform: GPL19057 Series: GSE134275 GSE134277 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3941nnn/GSM3941323/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6443352 Sample Accession: GSM3941323 ID: 303941323 11262. ATAC-Seq in Mouse E16 Intestine Organism: Mus musculus Source name: Mouse E16 embryonic tissue Platform: GPL19057 Series: GSE134275 GSE134277 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3941nnn/GSM3941322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6443351 Sample Accession: GSM3941322 ID: 303941322 11263. ATAC-Seq in Mouse E16 Hindstomach Organism: Mus musculus Source name: Mouse E16 embryonic tissue Platform: GPL19057 Series: GSE134275 GSE134277 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3941nnn/GSM3941321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6443350 Sample Accession: GSM3941321 ID: 303941321 11264. ATAC-Seq in Mouse E16 Forestomach Organism: Mus musculus Source name: Mouse E16 embryonic tissue Platform: GPL19057 Series: GSE134275 GSE134277 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3941nnn/GSM3941320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6443349 Sample Accession: GSM3941320 ID: 303941320 11265. ATAC-Seq in Mouse E16 Colon Organism: Mus musculus Source name: Mouse E16 embryonic tissue Platform: GPL19057 Series: GSE134275 GSE134277 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3941nnn/GSM3941319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6443348 Sample Accession: GSM3941319 ID: 303941319 11266. ATAC-Seq in Mouse E13 Stomach Organism: Mus musculus Source name: Mouse E13 embryonic tissue Platform: GPL19057 Series: GSE134275 GSE134277 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3941nnn/GSM3941318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6443347 Sample Accession: GSM3941318 ID: 303941318 11267. ATAC-Seq in Mouse E13 Intestine Organism: Mus musculus Source name: Mouse E13 embryonic tissue Platform: GPL19057 Series: GSE134275 GSE134277 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3941nnn/GSM3941317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6443346 Sample Accession: GSM3941317 ID: 303941317 11268. SP4_H3K9ac Organism: Oryza sativa Source name: Sterility male of WXS at uninucleate period Platform: GPL13160 Series: GSE114090 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047150 Sample Accession: GSM3132614 ID: 303132614 11269. FP4_H3K9ac Organism: Oryza sativa Source name: Fertility male of WXS at uninucleate period Platform: GPL13160 Series: GSE114090 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047149 Sample Accession: GSM3132613 ID: 303132613 11270. SP3_H3K9ac Organism: Oryza sativa Source name: Sterility male of WXS at meiosis period Platform: GPL13160 Series: GSE114090 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047148 Sample Accession: GSM3132612 ID: 303132612 11271. FP3_H3K9ac Organism: Oryza sativa Source name: Fertility male of WXS at meiosis period Platform: GPL13160 Series: GSE114090 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047147 Sample Accession: GSM3132611 ID: 303132611 11272. SP4_H3K4me2 Organism: Oryza sativa Source name: Sterility male of WXS at uninucleate period Platform: GPL13160 Series: GSE114090 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047146 Sample Accession: GSM3132610 ID: 303132610 11273. FP4_H3K4me2 Organism: Oryza sativa Source name: Fertility male of WXS at uninucleate period Platform: GPL13160 Series: GSE114090 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047145 Sample Accession: GSM3132609 ID: 303132609 11274. SP3_H3K4me2 Organism: Oryza sativa Source name: Sterility male of WXS at meiosis period Platform: GPL13160 Series: GSE114090 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047144 Sample Accession: GSM3132608 ID: 303132608 11275. FP3_H3K4me2 Organism: Oryza sativa Source name: Fertility male of WXS at meiosis period Platform: GPL13160 Series: GSE114090 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047143 Sample Accession: GSM3132607 ID: 303132607 11276. Gabra6-cre;LSL-SmoM2_4 Organism: Mus musculus Source name: mice cerebellum Platform: GPL17021 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453026 Sample Accession: GSM3637832 ID: 303637832 11277. Gabra6-cre;LSL-SmoM2_3 Organism: Mus musculus Source name: mice cerebellum Platform: GPL17021 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453025 Sample Accession: GSM3637831 ID: 303637831 11278. Gabra6-cre;LSL-SmoM2_2 Organism: Mus musculus Source name: mice cerebellum Platform: GPL17021 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453024 Sample Accession: GSM3637830 ID: 303637830 11279. Gabra6-cre;LSL-SmoM2_1 Organism: Mus musculus Source name: mice cerebellum Platform: GPL17021 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453023 Sample Accession: GSM3637829 ID: 303637829 11280. Gabra6-cre_3 Organism: Mus musculus Source name: mice cerebellum Platform: GPL17021 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453022 Sample Accession: GSM3637828 ID: 303637828 11281. Gabra6-cre_2 Organism: Mus musculus Source name: mice cerebellum Platform: GPL17021 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453021 Sample Accession: GSM3637827 ID: 303637827 11282. Gabra6-cre_1 Organism: Mus musculus Source name: mice cerebellum Platform: GPL17021 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453020 Sample Accession: GSM3637826 ID: 303637826 11283. NES-GFP+ D8 [ATAC-Seq] Organism: Mus musculus Source name: Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE108300 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2895nnn/GSM2895178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3485265 Sample Accession: GSM2895178 ID: 302895178 11284. NES-GFP+ D4 [ATAC-Seq] Organism: Mus musculus Source name: Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE108300 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2895nnn/GSM2895177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3485264 Sample Accession: GSM2895177 ID: 302895177 11285. NES-GFP- D8 [ATAC-Seq] Organism: Mus musculus Source name: Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE108300 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2895nnn/GSM2895176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3485263 Sample Accession: GSM2895176 ID: 302895176 11286. NES-GFP- D4 [ATAC-Seq] Organism: Mus musculus Source name: Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE108300 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2895nnn/GSM2895175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3485262 Sample Accession: GSM2895175 ID: 302895175 11287. Tentacles_ATAC_rep2 Organism: Hydra vulgaris Source name: Tentacles_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442269 Sample Accession: GSM3633551 ID: 303633551 11288. Tentacles_ATAC_rep1 Organism: Hydra vulgaris Source name: Tentacles_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442268 Sample Accession: GSM3633550 ID: 303633550 11289. Hypostome_ATAC_rep2 Organism: Hydra vulgaris Source name: Hypostome_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442267 Sample Accession: GSM3633549 ID: 303633549 11290. Hypostome_ATAC_rep1 Organism: Hydra vulgaris Source name: Hypostome_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442266 Sample Accession: GSM3633548 ID: 303633548 11291. Foot_ATAC_rep2 Organism: Hydra vulgaris Source name: Foot_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442265 Sample Accession: GSM3633547 ID: 303633547 11292. Foot_ATAC_rep1 Organism: Hydra vulgaris Source name: Foot_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442264 Sample Accession: GSM3633546 ID: 303633546 11293. BuddingZone_ATAC_rep2 Organism: Hydra vulgaris Source name: BuddingZone_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442263 Sample Accession: GSM3633545 ID: 303633545 11294. BuddingZone_ATAC_rep1 Organism: Hydra vulgaris Source name: BuddingZone_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442262 Sample Accession: GSM3633544 ID: 303633544 11295. BodyColumn_ATAC_rep2 Organism: Hydra vulgaris Source name: BodyColumn_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442261 Sample Accession: GSM3633543 ID: 303633543 11296. BodyColumn_ATAC_rep1 Organism: Hydra vulgaris Source name: BodyColumn_ATAC Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442260 Sample Accession: GSM3633542 ID: 303633542 11297. Reg_ATAC_48hr_rep2 Organism: Hydra vulgaris Source name: Reg_ATAC_48hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442259 Sample Accession: GSM3633541 ID: 303633541 11298. Reg_ATAC_48hr_rep1 Organism: Hydra vulgaris Source name: Reg_ATAC_48hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442258 Sample Accession: GSM3633540 ID: 303633540 11299. Reg_ATAC_24hr_rep2 Organism: Hydra vulgaris Source name: Reg_ATAC_24hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442257 Sample Accession: GSM3633539 ID: 303633539 11300. Reg_ATAC_24hr_rep1 Organism: Hydra vulgaris Source name: Reg_ATAC_24hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442256 Sample Accession: GSM3633538 ID: 303633538 11301. Reg_ATAC_12hr_rep2 Organism: Hydra vulgaris Source name: Reg_ATAC_12hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442255 Sample Accession: GSM3633537 ID: 303633537 11302. Reg_ATAC_12hr_rep1 Organism: Hydra vulgaris Source name: Reg_ATAC_12hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442254 Sample Accession: GSM3633536 ID: 303633536 11303. Reg_ATAC_6hr_rep2 Organism: Hydra vulgaris Source name: Reg_ATAC_6hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442253 Sample Accession: GSM3633535 ID: 303633535 11304. Reg_ATAC_6hr_rep1 Organism: Hydra vulgaris Source name: Reg_ATAC_6hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442252 Sample Accession: GSM3633534 ID: 303633534 11305. Reg_ATAC_4hr_rep2 Organism: Hydra vulgaris Source name: Reg_ATAC_4hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442251 Sample Accession: GSM3633533 ID: 303633533 11306. Reg_ATAC_4hr_rep1 Organism: Hydra vulgaris Source name: Reg_ATAC_4hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442250 Sample Accession: GSM3633532 ID: 303633532 11307. Reg_ATAC_2hr_rep2 Organism: Hydra vulgaris Source name: Reg_ATAC_2hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442249 Sample Accession: GSM3633531 ID: 303633531 11308. Reg_ATAC_2hr_rep1 Organism: Hydra vulgaris Source name: Reg_ATAC_2hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442248 Sample Accession: GSM3633530 ID: 303633530 11309. Reg_ATAC_0hr_rep2 Organism: Hydra vulgaris Source name: Reg_ATAC_0hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442247 Sample Accession: GSM3633529 ID: 303633529 11310. Reg_ATAC_0hr_rep1 Organism: Hydra vulgaris Source name: Reg_ATAC_0hr Platform: GPL25713 Series: GSE127277 GSE127280 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3633nnn/GSM3633528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5442246 Sample Accession: GSM3633528 ID: 303633528 11311. SP4_RNA-seq_rep3 Organism: Oryza sativa Source name: Sterility male of WXS at uninucleate period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047162 Sample Accession: GSM3132626 ID: 303132626 11312. SP4_RNA-seq_rep2 Organism: Oryza sativa Source name: Sterility male of WXS at uninucleate period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047161 Sample Accession: GSM3132625 ID: 303132625 11313. SP4_RNA-seq_rep1 Organism: Oryza sativa Source name: Sterility male of WXS at uninucleate period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047160 Sample Accession: GSM3132624 ID: 303132624 11314. SP3_RNA-seq_rep3 Organism: Oryza sativa Source name: Sterility male of WXS at meiosis period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047159 Sample Accession: GSM3132623 ID: 303132623 11315. SP3_RNA-seq_rep2 Organism: Oryza sativa Source name: Sterility male of WXS at meiosis period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047158 Sample Accession: GSM3132622 ID: 303132622 11316. SP3_RNA-seq_rep1 Organism: Oryza sativa Source name: Sterility male of WXS at meiosis period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047157 Sample Accession: GSM3132621 ID: 303132621 11317. FP4_RNA-seq_rep3 Organism: Oryza sativa Source name: Fertility male of WXS at uninucleate period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047156 Sample Accession: GSM3132620 ID: 303132620 11318. FP4_RNA-seq_rep2 Organism: Oryza sativa Source name: Fertility male of WXS at uninucleate period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047155 Sample Accession: GSM3132619 ID: 303132619 11319. FP4_RNA-seq_rep1 Organism: Oryza sativa Source name: Fertility male of WXS at uninucleate period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047154 Sample Accession: GSM3132618 ID: 303132618 11320. FP3_RNA-seq_rep3 Organism: Oryza sativa Source name: Fertility male of WXS at meiosis period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047153 Sample Accession: GSM3132617 ID: 303132617 11321. FP3_RNA-seq_rep2 Organism: Oryza sativa Source name: Fertility male of WXS at meiosis period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047152 Sample Accession: GSM3132616 ID: 303132616 11322. FP3_RNA-seq_rep1 Organism: Oryza sativa Source name: Fertility male of WXS at meiosis period Platform: GPL24468 Series: GSE114090 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047151 Sample Accession: GSM3132615 ID: 303132615 11323. PC3 ATAC-seq replicate 2 Organism: Homo sapiens Source name: PC3 Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5055007 Sample Accession: GSM3832734 ID: 303832734 11324. PC3 ATAC-seq replicate 1 Organism: Homo sapiens Source name: PC3 Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5055008 Sample Accession: GSM3832733 ID: 303832733 11325. GBM39 ATAC-seq replicate 2 Organism: Homo sapiens Source name: GBM39 Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5055011 Sample Accession: GSM3832732 ID: 303832732 11326. GBM39 ATAC-seq replicate 1 Organism: Homo sapiens Source name: GBM39 Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5055012 Sample Accession: GSM3832731 ID: 303832731 11327. GBM39HSR ATAC-seq replicate 2 Organism: Homo sapiens Source name: GBM39HSR Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5913662 Sample Accession: GSM3832730 ID: 303832730 11328. GBM39HSR ATAC-seq replicate 1 Organism: Homo sapiens Source name: GBM39HSR Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5913663 Sample Accession: GSM3832729 ID: 303832729 11329. COLO320HSR ATAC-seq replicate 2 Organism: Homo sapiens Source name: COLO320HSR Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5913660 Sample Accession: GSM3832728 ID: 303832728 11330. COLO320HSR ATAC-seq replicate 1 Organism: Homo sapiens Source name: COLO320HSR Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5913661 Sample Accession: GSM3832727 ID: 303832727 11331. COLO320DM ATAC-seq replicate 2 Organism: Homo sapiens Source name: COLO320DM Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5055009 Sample Accession: GSM3832726 ID: 303832726 11332. COLO320DM ATAC-seq replicate 1 Organism: Homo sapiens Source name: COLO320DM Platform: GPL20301 Series: GSE131956 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3832nnn/GSM3832725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5055010 Sample Accession: GSM3832725 ID: 303832725 11333. hSynI-creER+LSL-SmoM2+LSL-BRPF1 TR_2 Organism: Homo sapiens Source name: AF22 neuroephitilial-like stem cells Platform: GPL16791 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453034 Sample Accession: GSM3637840 ID: 303637840 11334. hSynI-creER+LSL-SmoM2+LSL-BRPF1 TR_1 Organism: Homo sapiens Source name: AF22 neuroephitilial-like stem cells Platform: GPL16791 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453033 Sample Accession: GSM3637839 ID: 303637839 11335. hSynI-creER+LSL-SmoM2_2 Organism: Homo sapiens Source name: AF22 neuroephitilial-like stem cells Platform: GPL16791 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453032 Sample Accession: GSM3637838 ID: 303637838 11336. hSynI-creER+LSL-SmoM2_1 Organism: Homo sapiens Source name: AF22 neuroephitilial-like stem cells Platform: GPL16791 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453031 Sample Accession: GSM3637837 ID: 303637837 11337. hSynI-creER+LSL-BRPF1 TR_2 Organism: Homo sapiens Source name: AF22 neuroephitilial-like stem cells Platform: GPL16791 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453030 Sample Accession: GSM3637836 ID: 303637836 11338. hSynI-creER+LSL-BRPF1 TR_1 Organism: Homo sapiens Source name: AF22 neuroephitilial-like stem cells Platform: GPL16791 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453029 Sample Accession: GSM3637835 ID: 303637835 11339. hSynI-creER+LSL-tdTomato_2 Organism: Homo sapiens Source name: AF22 neuroephitilial-like stem cells Platform: GPL16791 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453028 Sample Accession: GSM3637834 ID: 303637834 11340. hSynI-creER+LSL-tdTomato_1 Organism: Homo sapiens Source name: AF22 neuroephitilial-like stem cells Platform: GPL16791 Series: GSE127733 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5453027 Sample Accession: GSM3637833 ID: 303637833 11341. Adult_6 Organism: Rattus norvegicus Source name: Pancreatic Islets Platform: GPL18694 Series: GSE122747 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5029075 Sample Accession: GSM3484575 ID: 303484575 11342. Adult_5 Organism: Rattus norvegicus Source name: Pancreatic Islets Platform: GPL18694 Series: GSE122747 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5029074 Sample Accession: GSM3484574 ID: 303484574 11343. Adult_4 Organism: Rattus norvegicus Source name: Pancreatic Islets Platform: GPL18694 Series: GSE122747 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5029073 Sample Accession: GSM3484573 ID: 303484573 11344. P10_3 Organism: Rattus norvegicus Source name: Pancreatic Islets Platform: GPL18694 Series: GSE122747 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5029072 Sample Accession: GSM3484572 ID: 303484572 11345. P10_2 Organism: Rattus norvegicus Source name: Pancreatic Islets Platform: GPL18694 Series: GSE122747 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5029071 Sample Accession: GSM3484571 ID: 303484571 11346. P10_1 Organism: Rattus norvegicus Source name: Pancreatic Islets Platform: GPL18694 Series: GSE122747 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5029070 Sample Accession: GSM3484570 ID: 303484570 11347. SP4_ATAC_rep2 Organism: Oryza sativa Source name: Sterility male of WXS at uninucleate period Platform: GPL23013 Series: GSE114090 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047142 Sample Accession: GSM3132606 ID: 303132606 11348. SP4_ATAC_rep1 Organism: Oryza sativa Source name: Sterility male of WXS at uninucleate period Platform: GPL23013 Series: GSE114090 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047141 Sample Accession: GSM3132605 ID: 303132605 11349. FP4_ATAC_rep2 Organism: Oryza sativa Source name: Fertility male of WXS at uninucleate period Platform: GPL23013 Series: GSE114090 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047140 Sample Accession: GSM3132604 ID: 303132604 11350. FP4_ATAC_rep1 Organism: Oryza sativa Source name: Fertility male of WXS at uninucleate period Platform: GPL23013 Series: GSE114090 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047139 Sample Accession: GSM3132603 ID: 303132603 11351. SP3_ATAC_rep2 Organism: Oryza sativa Source name: Sterility male of WXS at meiosis period Platform: GPL23013 Series: GSE114090 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047138 Sample Accession: GSM3132602 ID: 303132602 11352. SP3_ATAC_rep1 Organism: Oryza sativa Source name: Sterility male of WXS at meiosis period Platform: GPL23013 Series: GSE114090 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047137 Sample Accession: GSM3132601 ID: 303132601 11353. FP3_ATAC_rep2 Organism: Oryza sativa Source name: Fertility male of WXS at meiosis period Platform: GPL23013 Series: GSE114090 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047136 Sample Accession: GSM3132600 ID: 303132600 11354. FP3_ATAC_rep1 Organism: Oryza sativa Source name: Fertility male of WXS at meiosis period Platform: GPL23013 Series: GSE114090 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047135 Sample Accession: GSM3132599 ID: 303132599 11355. ATAC_Mono_BM_SteadyState_rep2 Organism: Mus musculus Source name: Bone Marrow Platform: GPL24247 Series: GSE129724 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4120nnn/GSM4120378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6991012 Sample Accession: GSM4120378 ID: 304120378 11356. ATAC_Mono_LP_Toxo_rep2 Organism: Mus musculus Source name: Lamina Propria Platform: GPL24247 Series: GSE129724 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4120nnn/GSM4120377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6991011 Sample Accession: GSM4120377 ID: 304120377 11357. 11_46 ATAC-Seq Organism: Macaca mulatta Source name: CA1 Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442944 Sample Accession: GSM4233081 ID: 304233081 11358. 10_46 ATAC-Seq Organism: Macaca mulatta Source name: CA1 Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442943 Sample Accession: GSM4233080 ID: 304233080 11359. 8_46 ATAC-Seq Organism: Macaca mulatta Source name: CA1 Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442942 Sample Accession: GSM4233079 ID: 304233079 11360. 7_46 ATAC-Seq Organism: Macaca mulatta Source name: CA1 Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442941 Sample Accession: GSM4233078 ID: 304233078 11361. 6_46 ATAC-Seq Organism: Macaca mulatta Source name: CA1 Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442940 Sample Accession: GSM4233077 ID: 304233077 11362. 4_46 ATAC-Seq Organism: Macaca mulatta Source name: CA1 Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442939 Sample Accession: GSM4233076 ID: 304233076 11363. 2_46 ATAC-Seq Organism: Macaca mulatta Source name: CA1 Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442938 Sample Accession: GSM4233075 ID: 304233075 11364. 11_32 ATAC-seq Organism: Macaca mulatta Source name: posterior cingular gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543866 Sample Accession: GSM3679616 ID: 303679616 11365. 11_25 ATAC-seq Organism: Macaca mulatta Source name: inferior temporal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543865 Sample Accession: GSM3679615 ID: 303679615 11366. 11_14 ATAC-seq Organism: Macaca mulatta Source name: superior parietal lobule Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543848 Sample Accession: GSM3679614 ID: 303679614 11367. 10_32 ATAC-seq Organism: Macaca mulatta Source name: posterior cingular gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543847 Sample Accession: GSM3679613 ID: 303679613 11368. 10_25 ATAC-seq Organism: Macaca mulatta Source name: inferior temporal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543846 Sample Accession: GSM3679612 ID: 303679612 11369. 10_14 ATAC-seq Organism: Macaca mulatta Source name: superior parietal lobule Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543845 Sample Accession: GSM3679611 ID: 303679611 11370. 8_32 ATAC-seq Organism: Macaca mulatta Source name: posterior cingular gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543844 Sample Accession: GSM3679610 ID: 303679610 11371. 8_25 ATAC-seq Organism: Macaca mulatta Source name: inferior temporal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543843 Sample Accession: GSM3679609 ID: 303679609 11372. 8_22 ATAC-seq Organism: Macaca mulatta Source name: posterior superior occipital gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543842 Sample Accession: GSM3679608 ID: 303679608 11373. 8_2 ATAC-seq Organism: Macaca mulatta Source name: middle frontal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543841 Sample Accession: GSM3679607 ID: 303679607 11374. 7_32 ATAC-seq Organism: Macaca mulatta Source name: posterior cingular gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543784 Sample Accession: GSM3679606 ID: 303679606 11375. 7_25 ATAC-seq Organism: Macaca mulatta Source name: inferior temporal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543783 Sample Accession: GSM3679605 ID: 303679605 11376. 7_22 ATAC-seq Organism: Macaca mulatta Source name: posterior superior occipital gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543782 Sample Accession: GSM3679604 ID: 303679604 11377. 7_14 ATAC-seq Organism: Macaca mulatta Source name: superior parietal lobule Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543781 Sample Accession: GSM3679603 ID: 303679603 11378. 7_2 ATAC-seq Organism: Macaca mulatta Source name: middle frontal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543780 Sample Accession: GSM3679602 ID: 303679602 11379. 6_32 ATAC-seq Organism: Macaca mulatta Source name: posterior cingular gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543779 Sample Accession: GSM3679601 ID: 303679601 11380. 6_25 ATAC-seq Organism: Macaca mulatta Source name: inferior temporal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543778 Sample Accession: GSM3679600 ID: 303679600 11381. 6_22 ATAC-seq Organism: Macaca mulatta Source name: posterior superior occipital gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543777 Sample Accession: GSM3679599 ID: 303679599 11382. 6_14 ATAC-seq Organism: Macaca mulatta Source name: superior parietal lobule Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543760 Sample Accession: GSM3679598 ID: 303679598 11383. 6_2 ATAC-seq Organism: Macaca mulatta Source name: middle frontal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543759 Sample Accession: GSM3679597 ID: 303679597 11384. 4_32 ATAC-seq Organism: Macaca mulatta Source name: posterior cingular gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543758 Sample Accession: GSM3679596 ID: 303679596 11385. 4_14 ATAC-seq Organism: Macaca mulatta Source name: superior parietal lobule Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543757 Sample Accession: GSM3679595 ID: 303679595 11386. 3_32 ATAC-seq Organism: Macaca mulatta Source name: posterior cingular gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543756 Sample Accession: GSM3679594 ID: 303679594 11387. 3_22 ATAC-seq Organism: Macaca mulatta Source name: posterior superior occipital gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543755 Sample Accession: GSM3679593 ID: 303679593 11388. 3_14 ATAC-seq Organism: Macaca mulatta Source name: superior parietal lobule Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543754 Sample Accession: GSM3679592 ID: 303679592 11389. 3_2 ATAC-seq Organism: Macaca mulatta Source name: middle frontal gyrus Platform: GPL21120 Series: GSE128537 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3679nnn/GSM3679591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5543753 Sample Accession: GSM3679591 ID: 303679591 11390. Lats1/2 dKO ATAC seq Organism: Mus musculus Source name: Lgr5+ stem cells Platform: GPL17021 Series: GSE89742 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442989 Sample Accession: GSM4233151 ID: 304233151 11391. Yap/Taz dKO ATAC seq Organism: Mus musculus Source name: Lgr5+ stem cells Platform: GPL17021 Series: GSE89742 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442988 Sample Accession: GSM4233150 ID: 304233150 11392. Lgr_high ATAC seq Organism: Mus musculus Source name: Lgr5+ stem cells Platform: GPL17021 Series: GSE89742 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4233nnn/GSM4233149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7442987 Sample Accession: GSM4233149 ID: 304233149 11393. ATAC-seq_CTRtetCASZ1b_Dox Organism: Homo sapiens Source name: CTRtetCASZ1b_Dox Platform: GPL18573 Series: GSE126140 GSE126147 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3592nnn/GSM3592262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5341964 Sample Accession: GSM3592262 ID: 303592262 11394. ATAC-seq_CTRtetCASZ1b_Ctrl Organism: Homo sapiens Source name: CTRtetCASZ1b_Ctrl Platform: GPL18573 Series: GSE126140 GSE126147 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3592nnn/GSM3592261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5341963 Sample Accession: GSM3592261 ID: 303592261 11395. Detroit562 ATAC-seq Organism: Homo sapiens Source name: Pharynx Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3670nnn/GSM3670007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517034 Sample Accession: GSM3670007 ID: 303670007 11396. Cal27 ATAC-seq Organism: Homo sapiens Source name: Tongue Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3670nnn/GSM3670006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517033 Sample Accession: GSM3670006 ID: 303670006 11397. HN12 ATAC-seq Organism: Homo sapiens Source name: Tongue Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3670nnn/GSM3670004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517032 Sample Accession: GSM3670004 ID: 303670004 11398. SF767 ATAC-seq Organism: Homo sapiens Source name: Brain Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3670nnn/GSM3670003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517031 Sample Accession: GSM3670003 ID: 303670003 11399. TS576 ATAC-seq Organism: Homo sapiens Source name: Brain Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3670nnn/GSM3670001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517030 Sample Accession: GSM3670001 ID: 303670001 11400. GSC23 ATAC-seq Organism: Homo sapiens Source name: Brain Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3669nnn/GSM3669999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517029 Sample Accession: GSM3669999 ID: 303669999 11401. LNZ308 ATAC-seq Organism: Homo sapiens Source name: Brain Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3669nnn/GSM3669998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517028 Sample Accession: GSM3669998 ID: 303669998 11402. LN229 ATAC-seq Organism: Homo sapiens Source name: Brain Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3669nnn/GSM3669996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517027 Sample Accession: GSM3669996 ID: 303669996 11403. T98G ATAC-seq Organism: Homo sapiens Source name: Brain Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3669nnn/GSM3669994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517026 Sample Accession: GSM3669994 ID: 303669994 11404. U87 ATAC-seq Organism: Homo sapiens Source name: Brain Platform: GPL20301 Series: GSE128271 GSE128275 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3669nnn/GSM3669993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5517025 Sample Accession: GSM3669993 ID: 303669993 11405. ATAC HH9 rep2 Organism: Gallus gallus Source name: Chicken neural crest Platform: GPL19787 Series: GSE126880 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4120nnn/GSM4120724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6992712 Sample Accession: GSM4120724 ID: 304120724 11406. ATAC HH9 rep1 Organism: Gallus gallus Source name: Chicken neural crest Platform: GPL19787 Series: GSE126880 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4120nnn/GSM4120723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6992711 Sample Accession: GSM4120723 ID: 304120723 11407. ATAC HH6 rep2 Organism: Gallus gallus Source name: Chicken neural crest Platform: GPL19787 Series: GSE126880 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4120nnn/GSM4120722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6992710 Sample Accession: GSM4120722 ID: 304120722 11408. ATAC HH6 rep1 Organism: Gallus gallus Source name: Chicken neural crest Platform: GPL19787 Series: GSE126880 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4120nnn/GSM4120721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6992709 Sample Accession: GSM4120721 ID: 304120721 11409. CiPC-d1-3 [ATAC-Seq] Organism: Mus musculus Source name: Reprogrammed cells (CiPC) at d11 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959076 Sample Accession: GSM4110219 ID: 304110219 11410. CiPC-d1-2 [ATAC-Seq] Organism: Mus musculus Source name: Reprogrammed cells (CiPC) at d11 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959075 Sample Accession: GSM4110218 ID: 304110218 11411. CiPC-d1-1 [ATAC-Seq] Organism: Mus musculus Source name: Reprogrammed cells (CiPC) at d11 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959074 Sample Accession: GSM4110217 ID: 304110217 11412. RI-d8-3 [ATAC-Seq] Organism: Mus musculus Source name: Reprogramming intermediate at d8 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959073 Sample Accession: GSM4110216 ID: 304110216 11413. RI-d8-2 [ATAC-Seq] Organism: Mus musculus Source name: Reprogramming intermediate at d8 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959072 Sample Accession: GSM4110215 ID: 304110215 11414. RI-d8-1 [ATAC-Seq] Organism: Mus musculus Source name: Reprogramming intermediate at d8 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959071 Sample Accession: GSM4110214 ID: 304110214 11415. MEF-3 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryonic fibroblasts at passage 2 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959079 Sample Accession: GSM4110213 ID: 304110213 11416. MEF-2 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryonic fibroblasts at passage 2 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959078 Sample Accession: GSM4110212 ID: 304110212 11417. MEF-1 [ATAC-Seq] Organism: Mus musculus Source name: Mouse embryonic fibroblasts at passage 2 Platform: GPL19057 Series: GSE138521 GSE138524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4110nnn/GSM4110211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6959077 Sample Accession: GSM4110211 ID: 304110211 11418. CD94+CD56hi2 Organism: Homo sapiens Source name: blood Platform: GPL18573 Series: GSE122326 GSE122548 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3473nnn/GSM3473667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5008391 Sample Accession: GSM3473667 ID: 303473667 11419. CD94+CD56hi1 Organism: Homo sapiens Source name: blood Platform: GPL18573 Series: GSE122326 GSE122548 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3473nnn/GSM3473666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5008390 Sample Accession: GSM3473666 ID: 303473666 11420. CD94+CD56dim2 Organism: Homo sapiens Source name: blood Platform: GPL18573 Series: GSE122326 GSE122548 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3473nnn/GSM3473665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5008389 Sample Accession: GSM3473665 ID: 303473665 11421. CD94+CD56dim1 Organism: Homo sapiens Source name: blood Platform: GPL18573 Series: GSE122326 GSE122548 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3473nnn/GSM3473664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5008388 Sample Accession: GSM3473664 ID: 303473664 11422. CD94-CD56dim2 Organism: Homo sapiens Source name: blood Platform: GPL18573 Series: GSE122326 GSE122548 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3473nnn/GSM3473663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5008387 Sample Accession: GSM3473663 ID: 303473663 11423. CD94-CD56dim1 Organism: Homo sapiens Source name: blood Platform: GPL18573 Series: GSE122326 GSE122548 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3473nnn/GSM3473662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5008386 Sample Accession: GSM3473662 ID: 303473662 11424. Single cell ATAC-seq tdTomato MPs quiescent Organism: Mus musculus Source name: Mesenchymal Progenitors Platform: GPL19057 Series: GSE110038 GSE134175 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6433267 Sample Accession: GSM3938397 ID: 303938397 11425. dKO_cells_d5_rep2 (ATAC-seq) Organism: Mus musculus Source name: 5 days dKO embryoid bodies (ActA) Platform: GPL19057 Series: GSE128466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5536508 Sample Accession: GSM3676135 ID: 303676135 11426. dKO_cells_d5_rep1 (ATAC-seq) Organism: Mus musculus Source name: 5 days dKO embryoid bodies (ActA) Platform: GPL19057 Series: GSE128466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5536507 Sample Accession: GSM3676134 ID: 303676134 11427. WT_cells_d5_rep2 (ATAC-seq) Organism: Mus musculus Source name: 5 days A2lox.Cre embryoid bodies (ActA) Platform: GPL19057 Series: GSE128466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5536506 Sample Accession: GSM3676133 ID: 303676133 11428. WT_cells_d5_rep1 (ATAC-seq) Organism: Mus musculus Source name: 5 days A2lox.Cre embryoid bodies (ActA) Platform: GPL19057 Series: GSE128466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5536505 Sample Accession: GSM3676132 ID: 303676132 11429. ATAC-seq_Pgk_d2_rep2 Organism: Mus musculus Source name: mouse ESC (Pgk12.1) Platform: GPL19057 Series: GSE124596 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5197727 Sample Accession: GSM3537424 ID: 303537424 11430. ATAC-seq_Pgk_d2_rep1 Organism: Mus musculus Source name: mouse ESC (Pgk12.1) Platform: GPL19057 Series: GSE124596 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5197726 Sample Accession: GSM3537423 ID: 303537423 11431. ATAC-seq_Pgk_d1_rep2 Organism: Mus musculus Source name: mouse ESC (Pgk12.1) Platform: GPL19057 Series: GSE124596 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5197725 Sample Accession: GSM3537422 ID: 303537422 11432. ATAC-seq_Pgk_d1_rep1 Organism: Mus musculus Source name: mouse ESC (Pgk12.1) Platform: GPL19057 Series: GSE124596 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5197724 Sample Accession: GSM3537421 ID: 303537421 11433. ATAC-seq_Pgk_d0_rep2 Organism: Mus musculus Source name: mouse ESC (Pgk12.1) Platform: GPL19057 Series: GSE124596 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5197723 Sample Accession: GSM3537420 ID: 303537420 11434. ATAC-seq_Pgk_d0_rep1 Organism: Mus musculus Source name: mouse ESC (Pgk12.1) Platform: GPL19057 Series: GSE124596 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3537nnn/GSM3537419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5197722 Sample Accession: GSM3537419 ID: 303537419 11435. ATAC-seq SU5402 rep 2 Organism: Danio rerio Source name: whole embryo Platform: GPL18413 Series: GSE90637 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2409nnn/GSM2409741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2380878 Sample Accession: GSM2409741 ID: 302409741 11436. ATAC-seq SU5402 rep 1 Organism: Danio rerio Source name: whole embryo Platform: GPL18413 Series: GSE90637 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2409nnn/GSM2409740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2380877 Sample Accession: GSM2409740 ID: 302409740 11437. ATAC-seq Control rep 2 Organism: Danio rerio Source name: whole embryo Platform: GPL18413 Series: GSE90637 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2409nnn/GSM2409739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2380876 Sample Accession: GSM2409739 ID: 302409739 11438. ATAC-seq Control rep 1 Organism: Danio rerio Source name: whole embryo Platform: GPL18413 Series: GSE90637 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2409nnn/GSM2409738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2380875 Sample Accession: GSM2409738 ID: 302409738 11439. ATAC-seq_CHD8-Control_CR3 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223936 Sample Accession: GSM4194785 ID: 304194785 11440. ATAC-seq_CHD8-Control_CR1 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223935 Sample Accession: GSM4194784 ID: 304194784 11441. ATAC-seq_CHD8-Homozygous_KO_CR3 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223934 Sample Accession: GSM4194783 ID: 304194783 11442. ATAC-seq_CHD8-Homozygous_KO_CR1 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223933 Sample Accession: GSM4194782 ID: 304194782 11443. RNA-seq_CHD8-Control_CR3 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223932 Sample Accession: GSM4194781 ID: 304194781 11444. RNA-seq_CHD8-Control_CR1 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223931 Sample Accession: GSM4194780 ID: 304194780 11445. RNA-seq_CHD8-Homozygous_KO_CR3 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223930 Sample Accession: GSM4194779 ID: 304194779 11446. RNA-seq_CHD8-Homozygous_KO_CR1 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223929 Sample Accession: GSM4194778 ID: 304194778 11447. Input (is same for both ChIP experiments) Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223928 Sample Accession: GSM4194777 ID: 304194777 11448. CHD8_ChIPSeq_rep2 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223927 Sample Accession: GSM4194776 ID: 304194776 11449. CHD8_ChIPSeq_rep1 Organism: Homo sapiens Source name: Neurons Platform: GPL18573 Series: GSE141085 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7223926 Sample Accession: GSM4194775 ID: 304194775 11450. Metformin [ATAC-seq] Organism: Homo sapiens Source name: H1299 cells Platform: GPL18573 Series: GSE141059 GSE141060 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7218473 Sample Accession: GSM4193349 ID: 304193349 11451. Control [ATAC-seq] Organism: Homo sapiens Source name: H1299 cells Platform: GPL18573 Series: GSE141059 GSE141060 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7218472 Sample Accession: GSM4193348 ID: 304193348 11452. Myometrial tissue, subject TP5 (ATAC-Seq) Organism: Homo sapiens Source name: Myometrium Platform: GPL10999 Series: GSE137549 GSE137552 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4081nnn/GSM4081680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6857969 Sample Accession: GSM4081680 ID: 304081680 11453. Myometrial tissue, subject TP3 (ATAC-Seq) Organism: Homo sapiens Source name: Myometrium Platform: GPL10999 Series: GSE137549 GSE137552 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4081nnn/GSM4081679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6857968 Sample Accession: GSM4081679 ID: 304081679 11454. Myometrial tissue, subject TP4 (ATAC-Seq) Organism: Homo sapiens Source name: Myometrium Platform: GPL10999 Series: GSE137549 GSE137552 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4081nnn/GSM4081678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6857967 Sample Accession: GSM4081678 ID: 304081678 11455. Myometrial tissue, subject NP7 (ATAC-Seq) Organism: Homo sapiens Source name: Myometrium Platform: GPL10999 Series: GSE137549 GSE137552 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4081nnn/GSM4081677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6857966 Sample Accession: GSM4081677 ID: 304081677 11456. Myometrial tissue, subject NP6 (ATAC-Seq) Organism: Homo sapiens Source name: Myometrium Platform: GPL10999 Series: GSE137549 GSE137552 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4081nnn/GSM4081676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6857965 Sample Accession: GSM4081676 ID: 304081676 11457. Myometrial tissue, subject NP5 (ATAC-Seq) Organism: Homo sapiens Source name: Myometrium Platform: GPL10999 Series: GSE137549 GSE137552 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4081nnn/GSM4081675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6857964 Sample Accession: GSM4081675 ID: 304081675 11458. Wagner_Dmel_DL1_IntS11+E203Qrescue_RNA-seq Organism: Drosophila melanogaster Source name: Drosophila DL1 cells Platform: GPL19132 Series: GSE114467 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6404822 Sample Accession: GSM3927978 ID: 303927978 11459. Wagner_Dmel_DL1_IntS11dep+WTrescue_RNA-seq Organism: Drosophila melanogaster Source name: Drosophila DL1 cells Platform: GPL19132 Series: GSE114467 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6404821 Sample Accession: GSM3927977 ID: 303927977 11460. Wagner_Dmel_DL1_IntS11dep_RNA-seq Organism: Drosophila melanogaster Source name: Drosophila DL1 cells Platform: GPL19132 Series: GSE114467 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6404820 Sample Accession: GSM3927976 ID: 303927976 11461. Wagner_Dmel_DL1_Control_RNA-seq Organism: Drosophila melanogaster Source name: Drosophila DL1 cells Platform: GPL19132 Series: GSE114467 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6404819 Sample Accession: GSM3927975 ID: 303927975 11462. Adelman_Dmel_S2_ATAC-seq Organism: Drosophila melanogaster Source name: Drosophila S2 cells Platform: GPL19132 Series: GSE114467 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927974/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6404818 Sample Accession: GSM3927974 ID: 303927974 11463. H25neg_ATAC_R3 Organism: Gallus gallus Source name: H25neg_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296633 Sample Accession: GSM3580723 ID: 303580723 11464. H25neg_ATAC_R2 Organism: Gallus gallus Source name: H25neg_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296632 Sample Accession: GSM3580722 ID: 303580722 11465. H25neg_ATAC_R1 Organism: Gallus gallus Source name: H25neg_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296631 Sample Accession: GSM3580721 ID: 303580721 11466. H25E2_ATAC_R3 Organism: Gallus gallus Source name: H25E2_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296630 Sample Accession: GSM3580720 ID: 303580720 11467. H25E2_ATAC_R2 Organism: Gallus gallus Source name: H25E2_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296629 Sample Accession: GSM3580719 ID: 303580719 11468. H25E2_ATAC_R1 Organism: Gallus gallus Source name: H25E2_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296628 Sample Accession: GSM3580718 ID: 303580718 11469. H25DP_ATAC_R3 Organism: Gallus gallus Source name: H25DP_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296627 Sample Accession: GSM3580717 ID: 303580717 11470. H25DP_ATAC_R2 Organism: Gallus gallus Source name: H25DP_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296626 Sample Accession: GSM3580716 ID: 303580716 11471. H25DP_ATAC_R1 Organism: Gallus gallus Source name: H25DP_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296625 Sample Accession: GSM3580715 ID: 303580715 11472. H18neg_ATAC_R3 Organism: Gallus gallus Source name: H18neg_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296624 Sample Accession: GSM3580714 ID: 303580714 11473. H18neg_ATAC_R2 Organism: Gallus gallus Source name: H18neg_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296623 Sample Accession: GSM3580713 ID: 303580713 11474. H18neg_ATAC_R1 Organism: Gallus gallus Source name: H18neg_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296622 Sample Accession: GSM3580712 ID: 303580712 11475. H18E2_ATAC_R3 Organism: Gallus gallus Source name: H18E2_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296621 Sample Accession: GSM3580711 ID: 303580711 11476. H18E2_ATAC_R2 Organism: Gallus gallus Source name: H18E2_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296620 Sample Accession: GSM3580710 ID: 303580710 11477. H18E2_ATAC_R1 Organism: Gallus gallus Source name: H18E2_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296619 Sample Accession: GSM3580709 ID: 303580709 11478. H18DP_ATAC_R3 Organism: Gallus gallus Source name: H18DP_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296618 Sample Accession: GSM3580708 ID: 303580708 11479. H18DP_ATAC_R2 Organism: Gallus gallus Source name: H18DP_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296617 Sample Accession: GSM3580707 ID: 303580707 11480. H18DP_ATAC_R1 Organism: Gallus gallus Source name: H18DP_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296616 Sample Accession: GSM3580706 ID: 303580706 11481. H10E2_ATAC_R3 Organism: Gallus gallus Source name: H10E2_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296615 Sample Accession: GSM3580705 ID: 303580705 11482. H10E2_ATAC_R2 Organism: Gallus gallus Source name: H10E2_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296614 Sample Accession: GSM3580704 ID: 303580704 11483. H10E2_ATAC_R1 Organism: Gallus gallus Source name: H10E2_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296613 Sample Accession: GSM3580703 ID: 303580703 11484. H10_neg_ATAC_R3 Organism: Gallus gallus Source name: H10_neg_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296612 Sample Accession: GSM3580702 ID: 303580702 11485. H10_neg_ATAC_R2 Organism: Gallus gallus Source name: H10_neg_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296611 Sample Accession: GSM3580701 ID: 303580701 11486. H10_neg_ATAC_R1 Organism: Gallus gallus Source name: H10_neg_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296610 Sample Accession: GSM3580700 ID: 303580700 11487. H10NC2_ATAC_R3 Organism: Gallus gallus Source name: H10NC2_ATAC_R3 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296609 Sample Accession: GSM3580699 ID: 303580699 11488. H10NC2_ATAC_R2 Organism: Gallus gallus Source name: H10NC2_ATAC_R2 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296608 Sample Accession: GSM3580698 ID: 303580698 11489. H10NC2_ATAC_R1 Organism: Gallus gallus Source name: H10NC2_ATAC_R1 Platform: GPL19787 Series: GSE125707 GSE125711 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5296607 Sample Accession: GSM3580697 ID: 303580697 11490. H2009-Chip Organism: Homo sapiens Source name: H2009 cells Platform: GPL20301 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963325 Sample Accession: GSM4113830 ID: 304113830 11491. H2009-Input Organism: Homo sapiens Source name: H2009 cells Platform: GPL20301 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963324 Sample Accession: GSM4113829 ID: 304113829 11492. KO2_3 Organism: Mus musculus Source name: KP cells with Asf1a KO Platform: GPL21103 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963323 Sample Accession: GSM4113828 ID: 304113828 11493. KO2_1 Organism: Mus musculus Source name: KP cells with Asf1a KO Platform: GPL21103 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963322 Sample Accession: GSM4113827 ID: 304113827 11494. KO1_3 Organism: Mus musculus Source name: KP cells with Asf1a KO Platform: GPL21103 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113826/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963321 Sample Accession: GSM4113826 ID: 304113826 11495. KO1_1 Organism: Mus musculus Source name: KP cells with Asf1a KO Platform: GPL21103 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963320 Sample Accession: GSM4113825 ID: 304113825 11496. control4 Organism: Mus musculus Source name: KP cells with Asf1a WT Platform: GPL21103 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963319 Sample Accession: GSM4113824 ID: 304113824 11497. control3 Organism: Mus musculus Source name: KP cells with Asf1a WT Platform: GPL21103 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963318 Sample Accession: GSM4113823 ID: 304113823 11498. control2 Organism: Mus musculus Source name: KP cells with Asf1a WT Platform: GPL21103 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963317 Sample Accession: GSM4113822 ID: 304113822 11499. control1 Organism: Mus musculus Source name: KP cells with Asf1a WT Platform: GPL21103 Series: GSE138571 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4113nnn/GSM4113821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6963316 Sample Accession: GSM4113821 ID: 304113821 11500. ATAC-seq replicate 3 ("P15-1") Organism: Homo sapiens Source name: Neural Stem Cells Platform: GPL16791 Series: GSE140983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7213998 Sample Accession: GSM4191897 ID: 304191897 11501. ATAC-seq replicate 2 ("P5-2") Organism: Homo sapiens Source name: Neural Stem Cells Platform: GPL16791 Series: GSE140983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7213997 Sample Accession: GSM4191896 ID: 304191896 11502. ATAC-seq replicate 1 ("P5-1") Organism: Homo sapiens Source name: Neural Stem Cells Platform: GPL16791 Series: GSE140983 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7213996 Sample Accession: GSM4191895 ID: 304191895 11503. LDG_SLE_08_mat [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052885 Sample Accession: GSM4138758 ID: 304138758 11504. LDG_SLE_07_imm [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052884 Sample Accession: GSM4138757 ID: 304138757 11505. LDG_SLE_06_imm [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052883 Sample Accession: GSM4138756 ID: 304138756 11506. LDG_SLE_05_mat [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052882 Sample Accession: GSM4138755 ID: 304138755 11507. LDG_SLE_04_mat [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052881 Sample Accession: GSM4138754 ID: 304138754 11508. LDG_SLE_03_mat [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138753/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052880 Sample Accession: GSM4138753 ID: 304138753 11509. LDG_SLE_02_imm [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138752/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052879 Sample Accession: GSM4138752 ID: 304138752 11510. LDG_SLE_01_mat [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052878 Sample Accession: GSM4138751 ID: 304138751 11511. NDN_SLE_08 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138750/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052877 Sample Accession: GSM4138750 ID: 304138750 11512. NDN_SLE_07 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138749/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052876 Sample Accession: GSM4138749 ID: 304138749 11513. NDN_SLE_06 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138748/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052875 Sample Accession: GSM4138748 ID: 304138748 11514. NDN_SLE_05 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052874 Sample Accession: GSM4138747 ID: 304138747 11515. NDN_SLE_04 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052873 Sample Accession: GSM4138746 ID: 304138746 11516. NDN_SLE_03 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052872 Sample Accession: GSM4138745 ID: 304138745 11517. NDN_SLE_02 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052871 Sample Accession: GSM4138744 ID: 304138744 11518. NDN_SLE_01 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052870 Sample Accession: GSM4138743 ID: 304138743 11519. NDN_ctrl_08 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052869 Sample Accession: GSM4138742 ID: 304138742 11520. NDN_ctrl_07 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052868 Sample Accession: GSM4138741 ID: 304138741 11521. NDN_ctrl_06 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052867 Sample Accession: GSM4138740 ID: 304138740 11522. NDN_ctrl_05 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052866 Sample Accession: GSM4138739 ID: 304138739 11523. NDN_ctrl_04 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052865 Sample Accession: GSM4138738 ID: 304138738 11524. NDN_ctrl_03 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052864 Sample Accession: GSM4138737 ID: 304138737 11525. NDN_ctrl_02 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052863 Sample Accession: GSM4138736 ID: 304138736 11526. NDN_ctrl_01 [ATAC-seq] Organism: Homo sapiens Source name: Human whole blood Platform: GPL16791 Series: GSE139359 GSE139360 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4138nnn/GSM4138735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7052862 Sample Accession: GSM4138735 ID: 304138735 11527. T47D ATAC-seq noSerum replicate3 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE120162 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7066601 Sample Accession: GSM4142787 ID: 304142787 11528. T47D ATAC-seq noSerum replicate2 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE120162 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7066600 Sample Accession: GSM4142786 ID: 304142786 11529. T47D ATAC-seq noSerum replicate1 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE120162 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7066599 Sample Accession: GSM4142785 ID: 304142785 11530. RNA-seq.duxWT_Sorted_GFPpos_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL21103 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176242 Sample Accession: GSM4174908 ID: 304174908 11531. RNA-seq.duxWT_Sorted_GFPpos_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL21103 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176241 Sample Accession: GSM4174907 ID: 304174907 11532. RNA-seq.duxWT_Sorted_GFPneg_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL21103 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176240 Sample Accession: GSM4174906 ID: 304174906 11533. RNA-seq.duxWT_Sorted_GFPneg_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL21103 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176239 Sample Accession: GSM4174905 ID: 304174905 11534. RNA-seq.duxKO_Sorted_GFPpos_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL21103 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176238 Sample Accession: GSM4174904 ID: 304174904 11535. RNA-seq.duxKO_Sorted_GFPpos_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL21103 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176237 Sample Accession: GSM4174903 ID: 304174903 11536. RNA-seq.duxKO_Sorted_GFPneg_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL21103 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176236 Sample Accession: GSM4174902 ID: 304174902 11537. RNA-seq.duxKO_Sorted_GFPneg_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL21103 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7176235 Sample Accession: GSM4174901 ID: 304174901 11538. ATAC-seq.Sorted-plusDox_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL19057 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4961726 Sample Accession: GSM3453130 ID: 303453130 11539. ATAC-seq.Sorted-plusDox_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL19057 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4961725 Sample Accession: GSM3453129 ID: 303453129 11540. ATAC-seq.Sorted-plus2DG_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL19057 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4961724 Sample Accession: GSM3453128 ID: 303453128 11541. ATAC-seq.Sorted-plus2DG_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL19057 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4961723 Sample Accession: GSM3453127 ID: 303453127 11542. ATAC-seq.Sorted-noDox_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL19057 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4961722 Sample Accession: GSM3453126 ID: 303453126 11543. ATAC-seq.Sorted-noDox_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL19057 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4961721 Sample Accession: GSM3453125 ID: 303453125 11544. ATAC-seq.Sorted-no2DG_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL19057 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4961720 Sample Accession: GSM3453124 ID: 303453124 11545. ATAC-seq.Sorted-no2DG_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL19057 Series: GSE113671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4961719 Sample Accession: GSM3453123 ID: 303453123 11546. islet_ATAC-Seq_rep5 Organism: Homo sapiens Source name: human cadaveric islet Platform: GPL20301 Series: GSE115327 GSE140404 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141358 Sample Accession: GSM4160688 ID: 304160688 11547. islet_ATAC-Seq_rep4 Organism: Homo sapiens Source name: human cadaveric islet Platform: GPL20301 Series: GSE115327 GSE140404 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141357 Sample Accession: GSM4160687 ID: 304160687 11548. islet_ATAC-Seq_rep3 Organism: Homo sapiens Source name: human cadaveric islet Platform: GPL20301 Series: GSE115327 GSE140404 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141356 Sample Accession: GSM4160686 ID: 304160686 11549. islet_ATAC-Seq_rep2 Organism: Homo sapiens Source name: human cadaveric islet Platform: GPL20301 Series: GSE115327 GSE140404 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141355 Sample Accession: GSM4160685 ID: 304160685 11550. islet_ATAC-Seq_rep1 Organism: Homo sapiens Source name: human cadaveric islet Platform: GPL20301 Series: GSE115327 GSE140404 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7141353 Sample Accession: GSM4160684 ID: 304160684 11551. Hs_Cyt49_PancreasD10_0.1%Digitonin_ATAC-seq_E Organism: Homo sapiens Source name: Pancreatic progenitor cells Platform: GPL20301 Series: GSE115326 GSE115327 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3189nnn/GSM3189586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4212654 Sample Accession: GSM3189586 ID: 303189586 11552. hu_Cyt49_PancreasD10_ATAC-seq_A Organism: Homo sapiens Source name: Pancreatic progenitor cells Platform: GPL20301 Series: GSE115326 GSE115327 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3175nnn/GSM3175562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4166000 Sample Accession: GSM3175562 ID: 303175562 11553. G648_6 GSC ATAC-seq Organism: Homo sapiens Source name: G648_6 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942284/ Sample Accession: GSM2942284 ID: 302942284 11554. G648_5 GSC ATAC-seq Organism: Homo sapiens Source name: G648_5 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942283/ Sample Accession: GSM2942283 ID: 302942283 11555. G648_4 GSC ATAC-seq Organism: Homo sapiens Source name: G648_4 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942282/ Sample Accession: GSM2942282 ID: 302942282 11556. G648_3 GSC ATAC-seq Organism: Homo sapiens Source name: G648_3 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942281/ Sample Accession: GSM2942281 ID: 302942281 11557. G648_2 GSC ATAC-seq Organism: Homo sapiens Source name: G648_2 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942280/ Sample Accession: GSM2942280 ID: 302942280 11558. G648_1 GSC ATAC-seq Organism: Homo sapiens Source name: G648_1 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942279/ Sample Accession: GSM2942279 ID: 302942279 11559. G551_DP3 GSC ATAC-seq Organism: Homo sapiens Source name: G551_DP3 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942278/ Sample Accession: GSM2942278 ID: 302942278 11560. G551_DP2 GSC ATAC-seq Organism: Homo sapiens Source name: G551_DP2 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942277/ Sample Accession: GSM2942277 ID: 302942277 11561. G551_3 GSC ATAC-seq Organism: Homo sapiens Source name: G551_3 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942276/ Sample Accession: GSM2942276 ID: 302942276 11562. G551_1 GSC ATAC-seq Organism: Homo sapiens Source name: G551_1 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942275/ Sample Accession: GSM2942275 ID: 302942275 11563. G498_7 GSC ATAC-seq Organism: Homo sapiens Source name: G498_7 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942274/ Sample Accession: GSM2942274 ID: 302942274 11564. G498_6 GSC ATAC-seq Organism: Homo sapiens Source name: G498_6 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942273/ Sample Accession: GSM2942273 ID: 302942273 11565. G498_5 GSC ATAC-seq Organism: Homo sapiens Source name: G498_5 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942272/ Sample Accession: GSM2942272 ID: 302942272 11566. G498_3 GSC ATAC-seq Organism: Homo sapiens Source name: G498_3 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942271/ Sample Accession: GSM2942271 ID: 302942271 11567. G498_2 GSC ATAC-seq Organism: Homo sapiens Source name: G498_2 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942270/ Sample Accession: GSM2942270 ID: 302942270 11568. G498_1 GSC ATAC-seq Organism: Homo sapiens Source name: G498_1 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942269/ Sample Accession: GSM2942269 ID: 302942269 11569. G800 GSC ATAC-seq Organism: Homo sapiens Source name: G800 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942268/ Sample Accession: GSM2942268 ID: 302942268 11570. G799 GSC ATAC-seq Organism: Homo sapiens Source name: G799 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942267/ Sample Accession: GSM2942267 ID: 302942267 11571. G797 GSC ATAC-seq Organism: Homo sapiens Source name: G797 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942266/ Sample Accession: GSM2942266 ID: 302942266 11572. G744 GSC ATAC-seq Organism: Homo sapiens Source name: G744 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942265/ Sample Accession: GSM2942265 ID: 302942265 11573. G729 GSC ATAC-seq Organism: Homo sapiens Source name: G729 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942264/ Sample Accession: GSM2942264 ID: 302942264 11574. G719 GSC ATAC-seq Organism: Homo sapiens Source name: G719 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942263/ Sample Accession: GSM2942263 ID: 302942263 11575. G706 GSC ATAC-seq Organism: Homo sapiens Source name: G706 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942262/ Sample Accession: GSM2942262 ID: 302942262 11576. G705 GSC ATAC-seq Organism: Homo sapiens Source name: G705 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942261/ Sample Accession: GSM2942261 ID: 302942261 11577. G702 GSC ATAC-seq Organism: Homo sapiens Source name: G702 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942260/ Sample Accession: GSM2942260 ID: 302942260 11578. G648 GSC ATAC-seq Organism: Homo sapiens Source name: G648 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942259/ Sample Accession: GSM2942259 ID: 302942259 11579. G620 GSC ATAC-seq Organism: Homo sapiens Source name: G620 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942258/ Sample Accession: GSM2942258 ID: 302942258 11580. G613 GSC ATAC-seq Organism: Homo sapiens Source name: G613 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942257/ Sample Accession: GSM2942257 ID: 302942257 11581. G594 GSC ATAC-seq Organism: Homo sapiens Source name: G594 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942256/ Sample Accession: GSM2942256 ID: 302942256 11582. G584 GSC ATAC-seq Organism: Homo sapiens Source name: G584 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942255/ Sample Accession: GSM2942255 ID: 302942255 11583. G583 GSC ATAC-seq Organism: Homo sapiens Source name: G583 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942254/ Sample Accession: GSM2942254 ID: 302942254 11584. G577 GSC ATAC-seq Organism: Homo sapiens Source name: G577 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942253/ Sample Accession: GSM2942253 ID: 302942253 11585. G571 GSC ATAC-seq Organism: Homo sapiens Source name: G571 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942252/ Sample Accession: GSM2942252 ID: 302942252 11586. G567 GSC ATAC-seq Organism: Homo sapiens Source name: G567 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942251/ Sample Accession: GSM2942251 ID: 302942251 11587. G566 GSC ATAC-seq Organism: Homo sapiens Source name: G566 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942250/ Sample Accession: GSM2942250 ID: 302942250 11588. G564 GSC ATAC-seq Organism: Homo sapiens Source name: G564 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942249/ Sample Accession: GSM2942249 ID: 302942249 11589. G551 GSC ATAC-seq Organism: Homo sapiens Source name: G551 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942248/ Sample Accession: GSM2942248 ID: 302942248 11590. G549 GSC ATAC-seq Organism: Homo sapiens Source name: G549 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942247/ Sample Accession: GSM2942247 ID: 302942247 11591. G523 GSC ATAC-seq Organism: Homo sapiens Source name: G523 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942246/ Sample Accession: GSM2942246 ID: 302942246 11592. G498 GSC ATAC-seq Organism: Homo sapiens Source name: G498 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942245/ Sample Accession: GSM2942245 ID: 302942245 11593. G489 GSC ATAC-seq Organism: Homo sapiens Source name: G489 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942244/ Sample Accession: GSM2942244 ID: 302942244 11594. G411 GSC ATAC-seq Organism: Homo sapiens Source name: G411 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942243/ Sample Accession: GSM2942243 ID: 302942243 11595. G361 GSC ATAC-seq Organism: Homo sapiens Source name: G361 Platform: GPL11154 Series: GSE109398 GSE109399 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942242/ Sample Accession: GSM2942242 ID: 302942242 11596. ATAC-Seq Sample_FULV_sg6_KO_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172060 Sample Accession: GSM3525995 ID: 303525995 11597. ATAC-Seq Sample_FULV_sg6_KO_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172059 Sample Accession: GSM3525994 ID: 303525994 11598. ATAC-Seq Sample_FULV_sg2_KO_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172058 Sample Accession: GSM3525993 ID: 303525993 11599. ATAC-Seq Sample_FULV_sg2_KO_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172057 Sample Accession: GSM3525992 ID: 303525992 11600. ATAC-Seq Sample_FULV_sg1_KO_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172056 Sample Accession: GSM3525991 ID: 303525991 11601. ATAC-Seq Sample_FULV_sg1_KO_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172055 Sample Accession: GSM3525990 ID: 303525990 11602. ATAC-Seq Sample_FULV_sg13_Control_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172054 Sample Accession: GSM3525989 ID: 303525989 11603. ATAC-Seq Sample_FULV_sg13_Control_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172053 Sample Accession: GSM3525988 ID: 303525988 11604. ATAC-Seq Sample_FULV_sg12_Control_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172052 Sample Accession: GSM3525987 ID: 303525987 11605. ATAC-Seq Sample_FULV_sg12_Control_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172051 Sample Accession: GSM3525986 ID: 303525986 11606. ATAC-Seq Sample_DMSO_sg6_KO_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172050 Sample Accession: GSM3525985 ID: 303525985 11607. ATAC-Seq Sample_DMSO_sg6_KO_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172049 Sample Accession: GSM3525984 ID: 303525984 11608. ATAC-Seq Sample_DMSO_sg2_KO_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172048 Sample Accession: GSM3525983 ID: 303525983 11609. ATAC-Seq Sample_DMSO_sg2_KO_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172047 Sample Accession: GSM3525982 ID: 303525982 11610. ATAC-Seq Sample_DMSO_sg1_KO_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172046 Sample Accession: GSM3525981 ID: 303525981 11611. ATAC-Seq Sample_DMSO_sg1_KO_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172045 Sample Accession: GSM3525980 ID: 303525980 11612. ATAC-Seq Sample_DMSO_sg13_Control_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172044 Sample Accession: GSM3525979 ID: 303525979 11613. ATAC-Seq Sample_DMSO_sg13_Control_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172043 Sample Accession: GSM3525978 ID: 303525978 11614. ATAC-Seq Sample_DMSO_sg12_Control_2 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172042 Sample Accession: GSM3525977 ID: 303525977 11615. ATAC-Seq Sample_DMSO_sg12_Control_1 Organism: Homo sapiens Source name: Breast Cancer Cell Platform: GPL11154 Series: GSE124224 GSE124228 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3525nnn/GSM3525976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5172041 Sample Accession: GSM3525976 ID: 303525976 11616. ALL50_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636870 Sample Accession: GSM2974408 ID: 302974408 11617. ALL50_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636869 Sample Accession: GSM2974407 ID: 302974407 11618. ALL54_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636868 Sample Accession: GSM2974406 ID: 302974406 11619. ALL54_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636867 Sample Accession: GSM2974405 ID: 302974405 11620. ALL19_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636866 Sample Accession: GSM2974404 ID: 302974404 11621. ALL19_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636865 Sample Accession: GSM2974403 ID: 302974403 11622. ALL10_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636864 Sample Accession: GSM2974402 ID: 302974402 11623. ALL10_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974401/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636863 Sample Accession: GSM2974401 ID: 302974401 11624. ALL7_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636862 Sample Accession: GSM2974400 ID: 302974400 11625. ALL7_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636861 Sample Accession: GSM2974399 ID: 302974399 11626. ALL2_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636860 Sample Accession: GSM2974398 ID: 302974398 11627. ALL2_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636859 Sample Accession: GSM2974397 ID: 302974397 11628. ALL8_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636858 Sample Accession: GSM2974396 ID: 302974396 11629. ALL8_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636857 Sample Accession: GSM2974395 ID: 302974395 11630. ALL26_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636856 Sample Accession: GSM2974394 ID: 302974394 11631. ALL26_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636855 Sample Accession: GSM2974393 ID: 302974393 11632. ALL16_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636854 Sample Accession: GSM2974392 ID: 302974392 11633. ALL16_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636853 Sample Accession: GSM2974391 ID: 302974391 11634. ALL11_Dex_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636852 Sample Accession: GSM2974390 ID: 302974390 11635. ALL11_Ctrl_ATAC Organism: Homo sapiens Source name: ALL xenograft cells Platform: GPL20301 Series: GSE109945 GSE109949 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2974nnn/GSM2974389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3636851 Sample Accession: GSM2974389 ID: 302974389 11636. Mouse palatal mesenchyme rep3 Organism: Mus musculus Source name: Mesenchymal cells from palatal shelves Platform: GPL21273 Series: GSE139945 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4150nnn/GSM4150385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7101195 Sample Accession: GSM4150385 ID: 304150385 11637. Mouse palatal mesenchyme rep2 Organism: Mus musculus Source name: Mesenchymal cells from palatal shelves Platform: GPL21273 Series: GSE139945 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4150nnn/GSM4150384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7101194 Sample Accession: GSM4150384 ID: 304150384 11638. Mouse palatal mesenchyme rep1 Organism: Mus musculus Source name: Mesenchymal cells from palatal shelves Platform: GPL21273 Series: GSE139945 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4150nnn/GSM4150383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7101193 Sample Accession: GSM4150383 ID: 304150383 11639. Mouse palatal epithelium rep3 Organism: Mus musculus Source name: Epithelial cells from palatal shelves Platform: GPL21273 Series: GSE139945 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4150nnn/GSM4150382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7101192 Sample Accession: GSM4150382 ID: 304150382 11640. Mouse palatal epithelium rep2 Organism: Mus musculus Source name: Epithelial cells from palatal shelves Platform: GPL21273 Series: GSE139945 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4150nnn/GSM4150381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7101191 Sample Accession: GSM4150381 ID: 304150381 11641. Mouse palatal epithelium rep1 Organism: Mus musculus Source name: Epithelial cells from palatal shelves Platform: GPL21273 Series: GSE139945 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4150nnn/GSM4150380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7101190 Sample Accession: GSM4150380 ID: 304150380 11642. WT-CD4-Stage1_Rep2 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828927 Sample Accession: GSM4073858 ID: 304073858 11643. WT-CD4-Stage1_Rep1 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828926 Sample Accession: GSM4073857 ID: 304073857 11644. Naïve-Tregs_Rep3 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828925 Sample Accession: GSM4073856 ID: 304073856 11645. Naïve-Tregs_Rep2 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828924 Sample Accession: GSM4073855 ID: 304073855 11646. Naïve-Tregs_Rep1 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828923 Sample Accession: GSM4073854 ID: 304073854 11647. Activated-Tregs_Rep2 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828922 Sample Accession: GSM4073853 ID: 304073853 11648. Activated-Tregs_Rep1 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828921 Sample Accession: GSM4073852 ID: 304073852 11649. Activated-CD4_Rep4 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073851/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828920 Sample Accession: GSM4073851 ID: 304073851 11650. Activated-CD4_Rep3 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073850/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828919 Sample Accession: GSM4073850 ID: 304073850 11651. Activated-CD4_Rep2 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828918 Sample Accession: GSM4073849 ID: 304073849 11652. Activated-CD4_Rep1 Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE126811 GSE137246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4073nnn/GSM4073848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6828917 Sample Accession: GSM4073848 ID: 304073848 11653. ATAC-seq [30_D4_WT_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086166 Sample Accession: GSM3498360 ID: 303498360 11654. ATAC-seq [29_D4_WT] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086165 Sample Accession: GSM3498359 ID: 303498359 11655. ATAC-seq [28_D1_WT_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086164 Sample Accession: GSM3498358 ID: 303498358 11656. ATAC-seq [27_D1_WT] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086163 Sample Accession: GSM3498357 ID: 303498357 11657. ATAC-seq [26_BATFKO2_Tfh] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086162 Sample Accession: GSM3498356 ID: 303498356 11658. ATAC-seq [25_BATFKO1_Tfh] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086161 Sample Accession: GSM3498355 ID: 303498355 11659. ATAC-seq [24_WT2_Tfh] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086160 Sample Accession: GSM3498354 ID: 303498354 11660. ATAC-seq [23_WT1_Tfh] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086159 Sample Accession: GSM3498353 ID: 303498353 11661. ATAC-seq [22_D1_IRF4cKO_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086158 Sample Accession: GSM3498352 ID: 303498352 11662. ATAC-seq [21_D1_IRF4WT2_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086157 Sample Accession: GSM3498351 ID: 303498351 11663. ATAC-seq [20_D1_IRF4cKO2] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086156 Sample Accession: GSM3498350 ID: 303498350 11664. ATAC-seq [19_D1_IRF4WT2] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086155 Sample Accession: GSM3498349 ID: 303498349 11665. ATAC-seq [18_D1_IRF4cKO1_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086154 Sample Accession: GSM3498348 ID: 303498348 11666. ATAC-seq [17_D1_IRF4WT1_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086153 Sample Accession: GSM3498347 ID: 303498347 11667. ATAC-seq [16_D1_IRF4cKO1] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086152 Sample Accession: GSM3498346 ID: 303498346 11668. ATAC-seq [15_D1_IRF4WT1] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086151 Sample Accession: GSM3498345 ID: 303498345 11669. ATAC-seq [14_D1_BATFKO2_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086150 Sample Accession: GSM3498344 ID: 303498344 11670. ATAC-seq [13_D1_BATFKO2] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086149 Sample Accession: GSM3498343 ID: 303498343 11671. ATAC-seq [12_D1_WT2_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086148 Sample Accession: GSM3498342 ID: 303498342 11672. ATAC-seq [11_D1_WT2] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086147 Sample Accession: GSM3498341 ID: 303498341 11673. ATAC-seq [10_D1BATFKO1_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086146 Sample Accession: GSM3498340 ID: 303498340 11674. ATAC-seq [9_D1_WT1_IL6] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086145 Sample Accession: GSM3498339 ID: 303498339 11675. ATAC-seq [8_D1_BATFKO1] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086144 Sample Accession: GSM3498338 ID: 303498338 11676. ATAC-seq [7_D1_WT1] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086143 Sample Accession: GSM3498337 ID: 303498337 11677. ATAC-seq [6_BATFKO_Th17] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086142 Sample Accession: GSM3498336 ID: 303498336 11678. ATAC-seq [5_WT_Th17] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086141 Sample Accession: GSM3498335 ID: 303498335 11679. ATAC-seq [4_Naive_BATFKO2] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086140 Sample Accession: GSM3498334 ID: 303498334 11680. ATAC-seq [3_Naive_WT2] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086139 Sample Accession: GSM3498333 ID: 303498333 11681. ATAC-seq [2_Naive_BATFKO1] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086138 Sample Accession: GSM3498332 ID: 303498332 11682. ATAC-seq [1_Naive_WT1] Organism: Mus musculus Source name: CD4 T cell Platform: GPL17021 Series: GSE123206 GSE123209 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5086137 Sample Accession: GSM3498331 ID: 303498331 11683. NGP ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL18573 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935361 Sample Accession: GSM4104590 ID: 304104590 11684. NGP ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL18573 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935360 Sample Accession: GSM4104589 ID: 304104589 11685. NB-69 ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL18573 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935357 Sample Accession: GSM4104586 ID: 304104586 11686. NB-69 ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL18573 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935356 Sample Accession: GSM4104585 ID: 304104585 11687. SK-N-SH ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935369 Sample Accession: GSM4104598 ID: 304104598 11688. SK-N-SH ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935368 Sample Accession: GSM4104597 ID: 304104597 11689. SK-N-FI ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935367 Sample Accession: GSM4104596 ID: 304104596 11690. SK-N-FI ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935366 Sample Accession: GSM4104595 ID: 304104595 11691. SK-N-BE(2)-C ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935365 Sample Accession: GSM4104594 ID: 304104594 11692. SK-N-BE(2)-C ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935364 Sample Accession: GSM4104593 ID: 304104593 11693. SK-N-AS ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935363 Sample Accession: GSM4104592 ID: 304104592 11694. SK-N-AS ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935362 Sample Accession: GSM4104591 ID: 304104591 11695. NBL-S ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935359 Sample Accession: GSM4104588 ID: 304104588 11696. NBL-S ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935358 Sample Accession: GSM4104587 ID: 304104587 11697. NB-1643 ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935355 Sample Accession: GSM4104584 ID: 304104584 11698. NB-1643 ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935354 Sample Accession: GSM4104583 ID: 304104583 11699. NB-1 ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935353 Sample Accession: GSM4104582 ID: 304104582 11700. NB-1 ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935352 Sample Accession: GSM4104581 ID: 304104581 11701. LA-N-5 ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935351 Sample Accession: GSM4104580 ID: 304104580 11702. LA-N-5 ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935350 Sample Accession: GSM4104579 ID: 304104579 11703. KELLY ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935349 Sample Accession: GSM4104578 ID: 304104578 11704. KELLY ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935348 Sample Accession: GSM4104577 ID: 304104577 11705. COG-N-453 ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935347 Sample Accession: GSM4104576 ID: 304104576 11706. COG-N-453 ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935346 Sample Accession: GSM4104575 ID: 304104575 11707. COG-N-440 ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935345 Sample Accession: GSM4104574 ID: 304104574 11708. COG-N-440 ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935344 Sample Accession: GSM4104573 ID: 304104573 11709. COG-N-415 ATAC-Seq REP2 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935343 Sample Accession: GSM4104572 ID: 304104572 11710. COG-N-415 ATAC-Seq REP1 Organism: Homo sapiens Source name: neuroblastoma-derived cell line Platform: GPL16791 Series: GSE138293 GSE138315 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6935342 Sample Accession: GSM4104571 ID: 304104571 11711. HEPM rep3 [ATAC-seq] Organism: Homo sapiens Source name: Human embryonic palatal mesenchymal cells Platform: GPL20795 Series: GSE139807 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083422 Sample Accession: GSM4146622 ID: 304146622 11712. HEPM rep2 [ATAC-seq] Organism: Homo sapiens Source name: Human embryonic palatal mesenchymal cells Platform: GPL20795 Series: GSE139807 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083421 Sample Accession: GSM4146621 ID: 304146621 11713. HEPM rep1 [ATAC-seq] Organism: Homo sapiens Source name: Human embryonic palatal mesenchymal cells Platform: GPL20795 Series: GSE139807 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083420 Sample Accession: GSM4146620 ID: 304146620 11714. HIOEC day 3 rep3 [ATAC-seq] Organism: Homo sapiens Source name: Immortalized human oral epithelial cell line Platform: GPL20795 Series: GSE139807 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083419 Sample Accession: GSM4146619 ID: 304146619 11715. HIOEC day 3 rep2 [ATAC-seq] Organism: Homo sapiens Source name: Immortalized human oral epithelial cell line Platform: GPL20795 Series: GSE139807 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083418 Sample Accession: GSM4146618 ID: 304146618 11716. HIOEC day 3 rep1 [ATAC-seq] Organism: Homo sapiens Source name: Immortalized human oral epithelial cell line Platform: GPL20795 Series: GSE139807 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083417 Sample Accession: GSM4146617 ID: 304146617 11717. HIOEC day 3 rep3 Organism: Homo sapiens Source name: Immortalized human oral epithelial cell line Platform: GPL20795 Series: GSE139805 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083352 Sample Accession: GSM4146613 ID: 304146613 11718. HIOEC day 3 rep2 Organism: Homo sapiens Source name: Immortalized human oral epithelial cell line Platform: GPL20795 Series: GSE139805 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083351 Sample Accession: GSM4146612 ID: 304146612 11719. HIOEC day 3 rep1 Organism: Homo sapiens Source name: Immortalized human oral epithelial cell line Platform: GPL20795 Series: GSE139805 GSE139809 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7083350 Sample Accession: GSM4146611 ID: 304146611 11720. ATAC-seq from sigmoid colon (ENCLB070YZI) Organism: Homo sapiens Source name: Homo sapiens sigmoid colon tissue male adult (37 years) Platform: GPL20301 Series: GSE139801 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7089381 Sample Accession: GSM4146596 ID: 304146596 11721. ATAC-seq from breast epithelium (ENCLB095HXE) Organism: Homo sapiens Source name: Homo sapiens breast epithelium tissue female adult (51 year) Platform: GPL20301 Series: GSE139763 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7089299 Sample Accession: GSM4146514 ID: 304146514 11722. ATAC-seq from right atrium auricular region (ENCLB165YSS) Organism: Homo sapiens Source name: Homo sapiens female adult (51 year) right atrium auricular region tissue Platform: GPL20301 Series: GSE139692 FTP download: GEO (BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4146nnn/GSM4146346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7089141 Sample Accession: GSM4146346 ID: 304146346 11723. C31B (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600860 Sample Accession: GSM3692195 ID: 303692195 11724. C31 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600849 Sample Accession: GSM3692194 ID: 303692194 11725. C25 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600859 Sample Accession: GSM3692193 ID: 303692193 11726. C23B (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600858 Sample Accession: GSM3692192 ID: 303692192 11727. C13B (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600857 Sample Accession: GSM3692191 ID: 303692191 11728. C13 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600856 Sample Accession: GSM3692190 ID: 303692190 11729. aD7 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600855 Sample Accession: GSM3692189 ID: 303692189 11730. aD21 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600854 Sample Accession: GSM3692188 ID: 303692188 11731. aD2 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600853 Sample Accession: GSM3692187 ID: 303692187 11732. aD18 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600852 Sample Accession: GSM3692186 ID: 303692186 11733. aD16 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600851 Sample Accession: GSM3692185 ID: 303692185 11734. aD11 (ATAC-Seq) Organism: Homo sapiens Source name: brain prefrontal cortex region tissues Platform: GPL24676 Series: GSE129040 GSE129041 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5600850 Sample Accession: GSM3692184 ID: 303692184 11735. ATAC-seq, Primary CD4+ T-cells, 24hr stimulated, replicates 1-3 Organism: Homo sapiens Source name: Primary CD4+ T-cells Platform: GPL16791 Series: GSE138767 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4118nnn/GSM4118998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7515904 Sample Accession: GSM4118998 ID: 304118998 11736. ATAC-seq, Primary CD4+ T-cells, 4hr stimulated, replicates 1-3 Organism: Homo sapiens Source name: Primary CD4+ T-cells Platform: GPL16791 Series: GSE138767 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4118nnn/GSM4118997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7515903 Sample Accession: GSM4118997 ID: 304118997 11737. ATAC-seq, Primary CD4+ T-cells, 2hr stimulated, replicates 1-3 Organism: Homo sapiens Source name: Primary CD4+ T-cells Platform: GPL16791 Series: GSE138767 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4118nnn/GSM4118996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7515902 Sample Accession: GSM4118996 ID: 304118996 11738. ATAC-seq, Primary CD4+ T-cells, 1hr stimulated, replicates 1-3 Organism: Homo sapiens Source name: Primary CD4+ T-cells Platform: GPL16791 Series: GSE138767 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4118nnn/GSM4118995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7515901 Sample Accession: GSM4118995 ID: 304118995 11739. ATAC-seq, Primary CD4+ T-cells, 20min stimulated, replicates 1-3 Organism: Homo sapiens Source name: Primary CD4+ T-cells Platform: GPL16791 Series: GSE138767 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4118nnn/GSM4118994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7515900 Sample Accession: GSM4118994 ID: 304118994 11740. ATAC-seq, Primary CD4+ T-cells, unstimulated, replicates 1-3 Organism: Homo sapiens Source name: Primary CD4+ T-cells Platform: GPL16791 Series: GSE138767 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4118nnn/GSM4118993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7515899 Sample Accession: GSM4118993 ID: 304118993 11741. MuSC_d7_Aged_bulkATACseq_Rep4 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057615 Sample Accession: GSM4140617 ID: 304140617 11742. MuSC_d7_Aged_bulkATACseq_Rep3 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057606 Sample Accession: GSM4140616 ID: 304140616 11743. MuSC_d7_Aged_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057605 Sample Accession: GSM4140615 ID: 304140615 11744. MuSC_d7_Aged_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057604 Sample Accession: GSM4140614 ID: 304140614 11745. MuSC_d7_Young_bulkATACseq_Rep5 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057603 Sample Accession: GSM4140613 ID: 304140613 11746. MuSC_d7_Young_bulkATACseq_Rep4 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057602 Sample Accession: GSM4140612 ID: 304140612 11747. MuSC_d7_Young_bulkATACseq_Rep3 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057601 Sample Accession: GSM4140611 ID: 304140611 11748. MuSC_d7_Young_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057600 Sample Accession: GSM4140610 ID: 304140610 11749. MuSC_d7_Young_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Post-injury Day 7, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057599 Sample Accession: GSM4140609 ID: 304140609 11750. MuSC_d5_Aged_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Post-injury Day 5, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057598 Sample Accession: GSM4140608 ID: 304140608 11751. MuSC_d5_Aged_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Post-injury Day 5, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057597 Sample Accession: GSM4140607 ID: 304140607 11752. MuSC_d5_Young_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Post-injury Day 5, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057596 Sample Accession: GSM4140606 ID: 304140606 11753. MuSC_d5_Young_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Post-injury Day 5, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057595 Sample Accession: GSM4140605 ID: 304140605 11754. MuSC_d3_Aged_bulkATACseq_Rep4 Organism: Mus musculus Source name: MuSCs, Post-injury Day 3, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057594 Sample Accession: GSM4140604 ID: 304140604 11755. MuSC_d3_Aged_bulkATACseq_Rep3 Organism: Mus musculus Source name: MuSCs, Post-injury Day 3, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057593 Sample Accession: GSM4140603 ID: 304140603 11756. MuSC_d3_Aged_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Post-injury Day 3, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057592 Sample Accession: GSM4140602 ID: 304140602 11757. MuSC_d3_Aged_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Post-injury Day 3, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057591 Sample Accession: GSM4140601 ID: 304140601 11758. MuSC_d3_Young_bulkATACseq_Rep4 Organism: Mus musculus Source name: MuSCs, Post-injury Day 3, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057663 Sample Accession: GSM4140600 ID: 304140600 11759. MuSC_d3_Young_bulkATACseq_Rep3 Organism: Mus musculus Source name: MuSCs, Post-injury Day 3, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057662 Sample Accession: GSM4140599 ID: 304140599 11760. MuSC_d3_Young_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Post-injury Day 3, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057661 Sample Accession: GSM4140598 ID: 304140598 11761. MuSC_d3_Young_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Post-injury Day 3, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057660 Sample Accession: GSM4140597 ID: 304140597 11762. MuSC_d1_Aged_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Post-injury Day 1, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057659 Sample Accession: GSM4140596 ID: 304140596 11763. MuSC_d1_Aged_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Post-injury Day 1, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057658 Sample Accession: GSM4140595 ID: 304140595 11764. MuSC_d1_Young_bulkATACseq_Rep3 Organism: Mus musculus Source name: MuSCs, Post-injury Day 1, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057657 Sample Accession: GSM4140594 ID: 304140594 11765. MuSC_d1_Young_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Post-injury Day 1, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057656 Sample Accession: GSM4140593 ID: 304140593 11766. MuSC_d1_Young_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Post-injury Day 1, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057655 Sample Accession: GSM4140592 ID: 304140592 11767. MuSC_d0_Young_Pax7_Rep1_bulkATAC_Rep3 Organism: Mus musculus Source name: MuSCs, Pre-injury, Young, Pax7+ Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057654 Sample Accession: GSM4140591 ID: 304140591 11768. MuSC_d0_Young_Pax7_Rep1_bulkATAC_Rep2 Organism: Mus musculus Source name: MuSCs, Pre-injury, Young, Pax7+ Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057653 Sample Accession: GSM4140590 ID: 304140590 11769. MuSC_d0_Young_Pax7_Rep1_bulkATAC_Rep1 Organism: Mus musculus Source name: MuSCs, Pre-injury, Young, Pax7+ Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057652 Sample Accession: GSM4140589 ID: 304140589 11770. MuSC_d0_Aged_bulkATACseq_Rep7 Organism: Mus musculus Source name: MuSCs, Pre-injury, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057651 Sample Accession: GSM4140588 ID: 304140588 11771. MuSC_d0_Aged_bulkATACseq_Rep6 Organism: Mus musculus Source name: MuSCs, Pre-injury, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057650 Sample Accession: GSM4140587 ID: 304140587 11772. MuSC_d0_Aged_bulkATACseq_Rep5 Organism: Mus musculus Source name: MuSCs, Pre-injury, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057649 Sample Accession: GSM4140586 ID: 304140586 11773. MuSC_d0_Aged_bulkATACseq_Rep4 Organism: Mus musculus Source name: MuSCs, Pre-injury, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057648 Sample Accession: GSM4140585 ID: 304140585 11774. MuSC_d0_Aged_bulkATACseq_Rep3 Organism: Mus musculus Source name: MuSCs, Pre-injury, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057647 Sample Accession: GSM4140584 ID: 304140584 11775. MuSC_d0_Aged_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Pre-injury, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057646 Sample Accession: GSM4140583 ID: 304140583 11776. MuSC_d0_Aged_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Pre-injury, Aged Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057645 Sample Accession: GSM4140582 ID: 304140582 11777. MuSC_d0_Young_bulkATACseq_Rep4 Organism: Mus musculus Source name: MuSCs, Pre-injury, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057644 Sample Accession: GSM4140581 ID: 304140581 11778. MuSC_d0_Young_bulkATACseq_Rep3 Organism: Mus musculus Source name: MuSCs, Pre-injury, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057643 Sample Accession: GSM4140580 ID: 304140580 11779. MuSC_d0_Young_bulkATACseq_Rep2 Organism: Mus musculus Source name: MuSCs, Pre-injury, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057642 Sample Accession: GSM4140579 ID: 304140579 11780. MuSC_d0_Young_bulkATACseq_Rep1 Organism: Mus musculus Source name: MuSCs, Pre-injury, Young Platform: GPL19057 Series: GSE121589 FTP download: GEO (BIGWIG, NARROWPEAK, TAGALIGN) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4140nnn/GSM4140578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX7057641 Sample Accession: GSM4140578 ID: 304140578 11781. RFP_neg_2: ATAC-seq in T-bet- cDC2, rep2 Organism: Mus musculus Source name: T-bet- cDC2s from pooled spleen Platform: GPL21103 Series: GSE130201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725663 Sample Accession: GSM3733705 ID: 303733705 11782. RFP_neg_1: ATAC-seq in T-bet- cDC2, rep1 Organism: Mus musculus Source name: T-bet- cDC2s from pooled spleen Platform: GPL21103 Series: GSE130201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725662 Sample Accession: GSM3733704 ID: 303733704 11783. RFP_pos_2: ATAC-seq in T-bet+ cDC2, rep2 Organism: Mus musculus Source name: T-bet+ cDC2s from pooled spleen Platform: GPL21103 Series: GSE130201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725661 Sample Accession: GSM3733703 ID: 303733703 11784. RFP_pos_1: ATAC-seq in T-bet+ cDC2, rep1 Organism: Mus musculus Source name: T-bet+ cDC2s from pooled spleen Platform: GPL21103 Series: GSE130201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725660 Sample Accession: GSM3733702 ID: 303733702 11785. XCR1_2: ATAC-seq in cDC1, rep2 Organism: Mus musculus Source name: cDC1s from pooled spleen Platform: GPL21103 Series: GSE130201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725659 Sample Accession: GSM3733701 ID: 303733701 11786. XCR1_1: ATAC-seq in cDC1, rep1 Organism: Mus musculus Source name: cDC1s from pooled spleen Platform: GPL21103 Series: GSE130201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725658 Sample Accession: GSM3733700 ID: 303733700 11787. NCCIT-2 Organism: Homo sapiens Source name: NCCIT cells Platform: GPL16791 Series: GSE118912 GSE124191 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5170188 Sample Accession: GSM3523679 ID: 303523679 11788. NCCIT-1 Organism: Homo sapiens Source name: NCCIT cells Platform: GPL16791 Series: GSE118912 GSE124191 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5170187 Sample Accession: GSM3523678 ID: 303523678 11789. ATAC-seq_singleSort_nrlKOPhotoreceptor_2_re-analyzed Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882973 Sample Accession: GSM3791384 ID: 303791384 11790. ATAC-seq_singleSort_nrlKOPhotoreceptor_1_re-analyzed Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882972 Sample Accession: GSM3791383 ID: 303791383 11791. ATAC-seq_doubleSort_greenCone_4_re-analyzed Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882971 Sample Accession: GSM3791382 ID: 303791382 11792. ATAC-seq_doubleSort_greenCone_3_re-analyzed Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882970 Sample Accession: GSM3791381 ID: 303791381 11793. ATAC-seq_singleSort_greenCone_2_re-analyzed Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882969 Sample Accession: GSM3791380 ID: 303791380 11794. ATAC-seq_singleSort_greenCone_1_re-analyzed Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882968 Sample Accession: GSM3791379 ID: 303791379 11795. ATAC-seq_singleSort_rod_2_re-analyzed Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882967 Sample Accession: GSM3791378 ID: 303791378 11796. ATAC-seq_singleSort_rod_1_re-analyzed Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882966 Sample Accession: GSM3791377 ID: 303791377 11797. ATAC-seq_OFF-BC_2 Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882956 Sample Accession: GSM3791367 ID: 303791367 11798. ATAC-seq_OFF-BC_1 Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882955 Sample Accession: GSM3791366 ID: 303791366 11799. ATAC-seq_ON-BC_2 Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882954 Sample Accession: GSM3791365 ID: 303791365 11800. ATAC-seq_ON-BC_1 Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882953 Sample Accession: GSM3791364 ID: 303791364 11801. ATAC-seq_Pan-BC_2 Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791363/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882952 Sample Accession: GSM3791363 ID: 303791363 11802. ATAC-seq_Pan-BC_1 Organism: Mus musculus Source name: FACs sorted retinal cells Platform: GPL17021 Series: GSE131625 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791362/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5882951 Sample Accession: GSM3791362 ID: 303791362 11803. ATAC-seq_Act.5 h + A-FOS _rep2 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h + A-FOS Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345388 Sample Accession: GSM3258595 ID: 303258595 11804. ATAC-seq_Act.5 h + A-FOS _rep1 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h + A-FOS Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345387 Sample Accession: GSM3258594 ID: 303258594 11805. ATAC-seq_Act.5 h + GFP _rep2 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h + GFP Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345386 Sample Accession: GSM3258593 ID: 303258593 11806. ATAC-seq_Act.5 h + GFP _rep1 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h + GFP Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345385 Sample Accession: GSM3258592 ID: 303258592 11807. ATAC-seq_Naïve + No protein Organism: Homo sapiens Source name: ATAC-seq_Naïve + No protein Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345384 Sample Accession: GSM3258591 ID: 303258591 11808. ATAC-seq_Act.60 h_without_CD28_rep2 Organism: Homo sapiens Source name: ATAC-seq_Act.60 h_without_CD28 Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345383 Sample Accession: GSM3258590 ID: 303258590 11809. ATAC-seq_Act.60 h_without_CD28_rep1 Organism: Homo sapiens Source name: ATAC-seq_Act.60 h_without_CD28 Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345382 Sample Accession: GSM3258589 ID: 303258589 11810. ATAC-seq_Act.24 h_without_CD28_rep2 Organism: Homo sapiens Source name: ATAC-seq_Act.24 h_without_CD28 Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345381 Sample Accession: GSM3258588 ID: 303258588 11811. ATAC-seq_Act.24 h_without_CD28_rep1 Organism: Homo sapiens Source name: ATAC-seq_Act.24 h_without_CD28 Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345380 Sample Accession: GSM3258587 ID: 303258587 11812. ATAC-seq_Act.5 h_without_CD28_rep2 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h_without_CD28 Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345379 Sample Accession: GSM3258586 ID: 303258586 11813. ATAC-seq_Act.5 h_without_CD28_rep1 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h_without_CD28 Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345378 Sample Accession: GSM3258585 ID: 303258585 11814. ATAC-seq_Act.60 h_rep2 Organism: Homo sapiens Source name: ATAC-seq_Act.60 h Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345377 Sample Accession: GSM3258584 ID: 303258584 11815. ATAC-seq_Act.60 h_rep1 Organism: Homo sapiens Source name: ATAC-seq_Act.60 h Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345376 Sample Accession: GSM3258583 ID: 303258583 11816. ATAC-seq_Act.24 h_rep3 Organism: Homo sapiens Source name: ATAC-seq_Act.24 h Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345375 Sample Accession: GSM3258582 ID: 303258582 11817. ATAC-seq_Act.24 h_rep2 Organism: Homo sapiens Source name: ATAC-seq_Act.24 h Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345374 Sample Accession: GSM3258581 ID: 303258581 11818. ATAC-seq_Act.24 h_rep1 Organism: Homo sapiens Source name: ATAC-seq_Act.24 h Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345373 Sample Accession: GSM3258580 ID: 303258580 11819. ATAC-seq_Act.5 h_rep3 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345372 Sample Accession: GSM3258579 ID: 303258579 11820. ATAC-seq_Act.5 h_rep2 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345371 Sample Accession: GSM3258578 ID: 303258578 11821. ATAC-seq_Act.5 h_rep1 Organism: Homo sapiens Source name: ATAC-seq_Act.5 h Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345370 Sample Accession: GSM3258577 ID: 303258577 11822. ATAC-seq_Naïve_rep3 Organism: Homo sapiens Source name: ATAC-seq_Naïve Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345369 Sample Accession: GSM3258576 ID: 303258576 11823. ATAC-seq_Naïve_rep2 Organism: Homo sapiens Source name: ATAC-seq_Naïve Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345368 Sample Accession: GSM3258575 ID: 303258575 11824. ATAC-seq_Naïve_rep1 Organism: Homo sapiens Source name: ATAC-seq_Naïve Platform: GPL16791 Series: GSE116696 GSE116698 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3258nnn/GSM3258574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4345367 Sample Accession: GSM3258574 ID: 303258574 11825. ATAC-seq_Brx68_lung_mets_x1_1 Organism: Homo sapiens Source name: lung Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907975 Sample Accession: GSM3089883 ID: 303089883 11826. ATAC-seq_Brx68_boneleg_mets_2_2 Organism: Homo sapiens Source name: brain Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907974 Sample Accession: GSM3089882 ID: 303089882 11827. ATAC-seq_Brx68_boneleg_mets_2_1 Organism: Homo sapiens Source name: bone Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907973 Sample Accession: GSM3089881 ID: 303089881 11828. ATAC-seq_Brx68_bonejaw_mets_2_1 Organism: Homo sapiens Source name: bone Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907972 Sample Accession: GSM3089880 ID: 303089880 11829. ATAC-seq_Brx68_bone_mets_x1_1 Organism: Homo sapiens Source name: bone Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907971 Sample Accession: GSM3089879 ID: 303089879 11830. ATAC-seq_Brx68_bone_mets_84_2 Organism: Homo sapiens Source name: bone Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907970 Sample Accession: GSM3089878 ID: 303089878 11831. ATAC-seq_Brx68_bone_mets_26_1 Organism: Homo sapiens Source name: bone Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907969 Sample Accession: GSM3089877 ID: 303089877 11832. ATAC-seq_Brx68_bone_mets_22_1 Organism: Homo sapiens Source name: bone Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907968 Sample Accession: GSM3089876 ID: 303089876 11833. ATAC-seq_Brx68_bone_mets_21_1 Organism: Homo sapiens Source name: bone Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907967 Sample Accession: GSM3089875 ID: 303089875 11834. ATAC-seq_Brx68_parental_CTC_Rep2 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907966 Sample Accession: GSM3089874 ID: 303089874 11835. ATAC-seq_Brx68_parental_CTC_disso_Rep5 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907965 Sample Accession: GSM3089873 ID: 303089873 11836. ATAC-seq_Brx68_parental_CTC_disso_Rep4 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907964 Sample Accession: GSM3089872 ID: 303089872 11837. ATAC-seq_Brx68_parental_CTC_Rep1 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907963 Sample Accession: GSM3089871 ID: 303089871 11838. ATAC-seq_Brx68_parental_CTC_Rep3 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907962 Sample Accession: GSM3089870 ID: 303089870 11839. ATAC-seq_Brx50_brain_mets_84_2 Organism: Homo sapiens Source name: brain Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907961 Sample Accession: GSM3089869 ID: 303089869 11840. ATAC-seq_Brx50_brain_mets_83_2 Organism: Homo sapiens Source name: brain Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907960 Sample Accession: GSM3089868 ID: 303089868 11841. ATAC-seq_Brx50_brain_mets_56_3 Organism: Homo sapiens Source name: brain Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907959 Sample Accession: GSM3089867 ID: 303089867 11842. ATAC-seq_Brx50_bone_mets_83_2 Organism: Homo sapiens Source name: bone Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907958 Sample Accession: GSM3089866 ID: 303089866 11843. ATAC-seq_Brx50_parental_CTC_Rep2 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907957 Sample Accession: GSM3089865 ID: 303089865 11844. ATAC-seq_Brx50_parental_CTC_disso_Rep4 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907956 Sample Accession: GSM3089864 ID: 303089864 11845. ATAC-seq_Brx50_parental_CTC_disso_Rep3 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089863/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907955 Sample Accession: GSM3089863 ID: 303089863 11846. ATAC-seq_Brx50_parental_CTC_Rep1 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089862/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907954 Sample Accession: GSM3089862 ID: 303089862 11847. ATAC-seq_Brx42_brain_mets_74_1 Organism: Homo sapiens Source name: brain Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089861/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907953 Sample Accession: GSM3089861 ID: 303089861 11848. ATAC-seq_Brx42_brain_mets_69_1 Organism: Homo sapiens Source name: brain Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907952 Sample Accession: GSM3089860 ID: 303089860 11849. ATAC-seq_Brx42_brain_mets_66_1 Organism: Homo sapiens Source name: brain Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907951 Sample Accession: GSM3089859 ID: 303089859 11850. ATAC-seq_Brx42_parental_CTC_Rep2 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907950 Sample Accession: GSM3089858 ID: 303089858 11851. ATAC-seq_Brx42_parental_CTC_disso_Rep4 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907949 Sample Accession: GSM3089857 ID: 303089857 11852. ATAC-seq_Brx42_parental_CTC_disso_Rep3 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907948 Sample Accession: GSM3089856 ID: 303089856 11853. ATAC-seq_Brx42_parental_CTC_Rep1 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907947 Sample Accession: GSM3089855 ID: 303089855 11854. ATAC-seq_Brx07_ovary_mets_30_2 Organism: Homo sapiens Source name: ovary Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907946 Sample Accession: GSM3089854 ID: 303089854 11855. ATAC-seq_Brx07_ovary_mets_28_2 Organism: Homo sapiens Source name: ovary Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907945 Sample Accession: GSM3089853 ID: 303089853 11856. ATAC-seq_Brx07_ovary_mets_27_2 Organism: Homo sapiens Source name: ovary Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907944 Sample Accession: GSM3089852 ID: 303089852 11857. ATAC-seq_Brx07_ovary_mets_24_2 Organism: Homo sapiens Source name: ovary Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089851/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907943 Sample Accession: GSM3089851 ID: 303089851 11858. ATAC-seq_Brx07_ovary_mets_12_1 Organism: Homo sapiens Source name: ovary Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089850/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907942 Sample Accession: GSM3089850 ID: 303089850 11859. ATAC-seq_Brx07_lung_mets_77_1 Organism: Homo sapiens Source name: lung Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907941 Sample Accession: GSM3089849 ID: 303089849 11860. ATAC-seq_Brx07_lung_mets_71_1 Organism: Homo sapiens Source name: lung Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907940 Sample Accession: GSM3089848 ID: 303089848 11861. ATAC-seq_Brx07_lung_mets_30_2 Organism: Homo sapiens Source name: lung Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907939 Sample Accession: GSM3089847 ID: 303089847 11862. ATAC-seq_Brx07_lung_mets_28_2 Organism: Homo sapiens Source name: lung Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907938 Sample Accession: GSM3089846 ID: 303089846 11863. ATAC-seq_Brx07_Kidney_mets_80_1 Organism: Homo sapiens Source name: Kidney Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907937 Sample Accession: GSM3089845 ID: 303089845 11864. ATAC-seq_Brx07_parental_CTC_Rep6 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907936 Sample Accession: GSM3089844 ID: 303089844 11865. ATAC-seq_Brx07_parental_CTC_disso_Rep8 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907935 Sample Accession: GSM3089843 ID: 303089843 11866. ATAC-seq_Brx07_parental_CTC_disso_Rep7 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907934 Sample Accession: GSM3089842 ID: 303089842 11867. ATAC-seq_Brx07_parental_CTC_Rep5 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907933 Sample Accession: GSM3089841 ID: 303089841 11868. ATAC-seq_Brx07_parental_CTC_Rep4 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907932 Sample Accession: GSM3089840 ID: 303089840 11869. ATAC-seq_Brx07_parental_CTC_Rep3 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907931 Sample Accession: GSM3089839 ID: 303089839 11870. ATAC-seq_Brx07_parental_CTC_Rep2 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907930 Sample Accession: GSM3089838 ID: 303089838 11871. ATAC-seq_Brx07_parental_CTC_Rep1 Organism: Homo sapiens Source name: culture Platform: GPL18573 Series: GSE112852 GSE112856 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3089nnn/GSM3089837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3907929 Sample Accession: GSM3089837 ID: 303089837 11872. SF11331_snATAC Organism: Homo sapiens Source name: Brain Platform: GPL24676 Series: GSE138794 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4119nnn/GSM4119520/ Sample Accession: GSM4119520 ID: 304119520 11873. SF11215_snATAC Organism: Homo sapiens Source name: Brain Platform: GPL24676 Series: GSE138794 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4119nnn/GSM4119519/ Sample Accession: GSM4119519 ID: 304119519 11874. SF11956_snATAC Organism: Homo sapiens Source name: Brain Platform: GPL24676 Series: GSE138794 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4119nnn/GSM4119518/ Sample Accession: GSM4119518 ID: 304119518 11875. SF11979_snATAC Organism: Homo sapiens Source name: Brain Platform: GPL24676 Series: GSE138794 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4119nnn/GSM4119517/ Sample Accession: GSM4119517 ID: 304119517 11876. SF11612_snATAC Organism: Homo sapiens Source name: Brain Platform: GPL24676 Series: GSE138794 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4119nnn/GSM4119516/ Sample Accession: GSM4119516 ID: 304119516 11877. SF11949_snATAC Organism: Homo sapiens Source name: Brain Platform: GPL24676 Series: GSE138794 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4119nnn/GSM4119515/ Sample Accession: GSM4119515 ID: 304119515 11878. SF12017_snATAC Organism: Homo sapiens Source name: Brain Platform: GPL24676 Series: GSE138794 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4119nnn/GSM4119514/ Sample Accession: GSM4119514 ID: 304119514 11879. SF11964_snATAC Organism: Homo sapiens Source name: Brain Platform: GPL24676 Series: GSE138794 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4119nnn/GSM4119513/ Sample Accession: GSM4119513 ID: 304119513 11880. GMP +Dox ATAC Seq rep2 Organism: Mus musculus Source name: GMP +Dox ATAC Seq Platform: GPL17021 Series: GSE121768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936469 Sample Accession: GSM3445904 ID: 303445904 11881. GMP +Dox ATAC Seq rep1 Organism: Mus musculus Source name: GMP +Dox ATAC Seq Platform: GPL17021 Series: GSE121768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936468 Sample Accession: GSM3445903 ID: 303445903 11882. GMP -Dox ATAC Seq rep2 Organism: Mus musculus Source name: GMP -Dox ATAC Seq Platform: GPL17021 Series: GSE121768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936467 Sample Accession: GSM3445902 ID: 303445902 11883. GMP -Dox ATAC Seq rep1 Organism: Mus musculus Source name: GMP -Dox ATAC Seq Platform: GPL17021 Series: GSE121768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936466 Sample Accession: GSM3445901 ID: 303445901 11884. Fresh GMP ATAC Seq rep2 Organism: Mus musculus Source name: Fresh GMP ATAC Seq Platform: GPL17021 Series: GSE121768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936465 Sample Accession: GSM3445900 ID: 303445900 11885. Fresh GMP ATAC Seq rep1 Organism: Mus musculus Source name: Fresh GMP ATAC Seq Platform: GPL17021 Series: GSE121768 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936464 Sample Accession: GSM3445899 ID: 303445899 11886. DCAV endo CD8 LN rep2 (ATAC-seq) Organism: Mus musculus Source name: CD44low naïve CD8+ T cells Platform: GPL13112 Series: GSE133504 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3910nnn/GSM3910482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6374410 Sample Accession: GSM3910482 ID: 303910482 11887. DCAV endo CD8 LN rep1 (ATAC-seq) Organism: Mus musculus Source name: CD44low naïve CD8+ T cells Platform: GPL13112 Series: GSE133504 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3910nnn/GSM3910481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6374409 Sample Accession: GSM3910481 ID: 303910481 11888. WT endo CD8 LN rep2 (ATAC-seq) Organism: Mus musculus Source name: CD44low naïve CD8+ T cells Platform: GPL13112 Series: GSE133504 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3910nnn/GSM3910480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6374408 Sample Accession: GSM3910480 ID: 303910480 11889. WT endo CD8 LN rep1 (ATAC-seq) Organism: Mus musculus Source name: CD44low naïve CD8+ T cells Platform: GPL13112 Series: GSE133504 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3910nnn/GSM3910479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6374407 Sample Accession: GSM3910479 ID: 303910479 11890. non-neural crest_8-10ss rep4 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine NEGATIVE neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892192 Sample Accession: GSM3431437 ID: 303431437 11891. non-neural crest_8-10ss rep3 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine NEGATIVE neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892191 Sample Accession: GSM3431436 ID: 303431436 11892. non-neural crest_8-10ss rep2 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine NEGATIVE neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892190 Sample Accession: GSM3431435 ID: 303431435 11893. non-neural crest_8-10ss rep1 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine NEGATIVE neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892189 Sample Accession: GSM3431434 ID: 303431434 11894. non-neural crest_5-6ss rep4 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine NEGATIVE neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892188 Sample Accession: GSM3431433 ID: 303431433 11895. non-neural crest_5-6ss rep3 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine NEGATIVE neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892187 Sample Accession: GSM3431432 ID: 303431432 11896. non-neural crest_5-6ss rep2 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine NEGATIVE neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892186 Sample Accession: GSM3431431 ID: 303431431 11897. non-neural crest_5-6ss rep1 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine NEGATIVE neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892185 Sample Accession: GSM3431430 ID: 303431430 11898. neural crest-8-10ss_FoxD3 rep3 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine+ neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892184 Sample Accession: GSM3431429 ID: 303431429 11899. neural crest-8-10ss_FoxD3 rep2 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine+ neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892183 Sample Accession: GSM3431428 ID: 303431428 11900. neural crest-8-10ss_FoxD3 rep1 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine+ neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892182 Sample Accession: GSM3431427 ID: 303431427 11901. whole epiblast rep2 ATAC-seq Organism: Gallus gallus Source name: microdissection of the whole epiblast Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892181 Sample Accession: GSM3431426 ID: 303431426 11902. whole epiblast rep1 ATAC-seq Organism: Gallus gallus Source name: microdissection of the whole epiblast Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892180 Sample Accession: GSM3431425 ID: 303431425 11903. HH10 somites ATAC-seq Organism: Gallus gallus Source name: microdissection of HH10 somites Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892179 Sample Accession: GSM3431424 ID: 303431424 11904. neural crest-5-6ss_Pax7 ATAC-seq Organism: Gallus gallus Source name: Pax7_enhancer195_Citrine+ neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892178 Sample Accession: GSM3431423 ID: 303431423 11905. neural crest-5-6ss_FoxD3 rep2 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine+ neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892177 Sample Accession: GSM3431422 ID: 303431422 11906. neural crest-5-6ss_FoxD3 rep1 ATAC-seq Organism: Gallus gallus Source name: FoxD3_Nc1_Citrine+ neural crest isolated by FACS Platform: GPL19787 Series: GSE121318 GSE121527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4892176 Sample Accession: GSM3431421 ID: 303431421 11907. ATAC_IL33_CGRP_3 Organism: Mus musculus Source name: Lung Innate lymphoid cells Platform: GPL21626 Series: GSE136154 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6749274 Sample Accession: GSM4041767 ID: 304041767 11908. ATAC_IL33_CGRP_2 Organism: Mus musculus Source name: Lung Innate lymphoid cells Platform: GPL21626 Series: GSE136154 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6749273 Sample Accession: GSM4041766 ID: 304041766 11909. ATAC_IL33_CGRP_1 Organism: Mus musculus Source name: Lung Innate lymphoid cells Platform: GPL21626 Series: GSE136154 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6749272 Sample Accession: GSM4041765 ID: 304041765 11910. ATAC_IL33_3 Organism: Mus musculus Source name: Lung Innate lymphoid cells Platform: GPL21626 Series: GSE136154 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6749271 Sample Accession: GSM4041764 ID: 304041764 11911. ATAC_IL33_2 Organism: Mus musculus Source name: Lung Innate lymphoid cells Platform: GPL21626 Series: GSE136154 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6749270 Sample Accession: GSM4041763 ID: 304041763 11912. ATAC_IL33_1 Organism: Mus musculus Source name: Lung Innate lymphoid cells Platform: GPL21626 Series: GSE136154 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6749269 Sample Accession: GSM4041762 ID: 304041762 11913. MA9+SETDB1_ATACseq_2 Organism: Mus musculus Source name: AML_MA9+SETDB1_ATACseq Platform: GPL19057 Series: GSE136850 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4059nnn/GSM4059639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6800801 Sample Accession: GSM4059639 ID: 304059639 11914. MA9+SETDB1_ATACseq_1 Organism: Mus musculus Source name: AML_MA9+SETDB1_ATACseq Platform: GPL19057 Series: GSE136850 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4059nnn/GSM4059638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6800800 Sample Accession: GSM4059638 ID: 304059638 11915. MA9+EV_ATACseq_2 Organism: Mus musculus Source name: AML_MA9+EV_ATACseq Platform: GPL19057 Series: GSE136850 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4059nnn/GSM4059637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6800799 Sample Accession: GSM4059637 ID: 304059637 11916. MA9+EV_ATACseq_1 Organism: Mus musculus Source name: AML_MA9+EV_ATACseq Platform: GPL19057 Series: GSE136850 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4059nnn/GSM4059636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6800798 Sample Accession: GSM4059636 ID: 304059636 11917. Phf21b_ATAC_N2A_siPhf21b_D2_df_Replicate2 Organism: Mus musculus Source name: N2A_siPhf21b_D2_df_Replicate2 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3399004 Sample Accession: GSM2859289 ID: 302859289 11918. Phf21b_ATAC_N2A_siPhf21b_D2_df_Replicate1 Organism: Mus musculus Source name: N2A_siPhf21b_D2_df_Replicate1 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3399003 Sample Accession: GSM2859288 ID: 302859288 11919. Phf21b_ATAC_N2A_siPhf21b_Undf_Replicate2 Organism: Mus musculus Source name: N2A_siPhf21b_Undf_Replicate2 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3399002 Sample Accession: GSM2859287 ID: 302859287 11920. Phf21b_ATAC_N2A_siPhf21b_Undf_Replicate1 Organism: Mus musculus Source name: N2A_siPhf21b_Undf_Replicate1 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3399001 Sample Accession: GSM2859286 ID: 302859286 11921. Phf21b_ATAC_N2A_siNTC_D2_df_Replicate2 Organism: Mus musculus Source name: N2A_siNTC_D2_df_Replicate2 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3399000 Sample Accession: GSM2859285 ID: 302859285 11922. Phf21b_ATAC_N2A_siNTC_D2_df_Replicate1 Organism: Mus musculus Source name: N2A_siNTC_D2_df_Replicate1 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398999 Sample Accession: GSM2859284 ID: 302859284 11923. Phf21b_ATAC_N2A_siNTC_Undf_Replicate2 Organism: Mus musculus Source name: N2A_siNTC_Undf_Replicate2 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398998 Sample Accession: GSM2859283 ID: 302859283 11924. Phf21b_ATAC_N2A_siNTC_Undf_Replicate1 Organism: Mus musculus Source name: N2A_siNTC_Undf_Replicate1 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398997 Sample Accession: GSM2859282 ID: 302859282 11925. Phf21b_Input_N2A_Day2_Diff_Replicate1 Organism: Mus musculus Source name: Input_N2A_Day2_Diff_Replicate1 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398996 Sample Accession: GSM2859281 ID: 302859281 11926. Phf21b_ChIP_N2A_Day2_Diff_Replicate1 Organism: Mus musculus Source name: N2A_Day2_Diff_Replicate1 Platform: GPL19057 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398995 Sample Accession: GSM2859280 ID: 302859280 11927. Phf21b_RNA_IUE_shPhf21b_Replicate3 Organism: Mus musculus Source name: IUE_shPhf21b_Replicate3 Platform: GPL19057 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398992 Sample Accession: GSM2859277 ID: 302859277 11928. Phf21b_RNA_IUE_shPhf21b_Replicate2 Organism: Mus musculus Source name: IUE_shPhf21b_Replicate2 Platform: GPL19057 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398991 Sample Accession: GSM2859276 ID: 302859276 11929. Phf21b_RNA_IUE_shPhf21b_Replicate1 Organism: Mus musculus Source name: IUE_shPhf21b_Replicate1 Platform: GPL19057 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398990 Sample Accession: GSM2859275 ID: 302859275 11930. Phf21b_RNA_IUE_shNTC_Replicate3 Organism: Mus musculus Source name: IUE_shNTC_Replicate3 Platform: GPL19057 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398989 Sample Accession: GSM2859274 ID: 302859274 11931. Phf21b_RNA_IUE_shNTC_Replicate2 Organism: Mus musculus Source name: IUE_shNTC_Replicate2 Platform: GPL19057 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398988 Sample Accession: GSM2859273 ID: 302859273 11932. Phf21b_RNA_IUE_shNTC_Replicate1 Organism: Mus musculus Source name: IUE_shNTC_Replicate1 Platform: GPL19057 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398987 Sample Accession: GSM2859272 ID: 302859272 11933. Ad-SREBP2 3 ATAC-Seq Organism: Homo sapiens Source name: HUVEC Platform: GPL11154 Series: GSE121781 GSE121784 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3446nnn/GSM3446028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936587 Sample Accession: GSM3446028 ID: 303446028 11934. Ad-Null 3 ATAC-Seq Organism: Homo sapiens Source name: HUVEC Platform: GPL11154 Series: GSE121781 GSE121784 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3446nnn/GSM3446027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936586 Sample Accession: GSM3446027 ID: 303446027 11935. Ad-SREBP2 2 ATAC-Seq Organism: Homo sapiens Source name: HUVEC Platform: GPL11154 Series: GSE121781 GSE121784 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3446nnn/GSM3446026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936585 Sample Accession: GSM3446026 ID: 303446026 11936. Ad-Null 2 ATAC-Seq Organism: Homo sapiens Source name: HUVEC Platform: GPL11154 Series: GSE121781 GSE121784 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3446nnn/GSM3446025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936584 Sample Accession: GSM3446025 ID: 303446025 11937. Ad-SREBP2 1 ATAC-Seq Organism: Homo sapiens Source name: HUVEC Platform: GPL11154 Series: GSE121781 GSE121784 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3446nnn/GSM3446024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936583 Sample Accession: GSM3446024 ID: 303446024 11938. Ad-Null 1 ATAC-Seq Organism: Homo sapiens Source name: HUVEC Platform: GPL11154 Series: GSE121781 GSE121784 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3446nnn/GSM3446023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4936582 Sample Accession: GSM3446023 ID: 303446023 11939. M-ATAC-Mut2 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4053nnn/GSM4053332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6778328 Sample Accession: GSM4053332 ID: 304053332 11940. M-ATAC-Mut1 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4053nnn/GSM4053331/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6778327 Sample Accession: GSM4053331 ID: 304053331 11941. M-ATAC-WT2 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4053nnn/GSM4053330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6778326 Sample Accession: GSM4053330 ID: 304053330 11942. M-ATAC-WT1 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4053nnn/GSM4053329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6778325 Sample Accession: GSM4053329 ID: 304053329 11943. ATAC-rep2 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3719nnn/GSM3719304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5670838 Sample Accession: GSM3719304 ID: 303719304 11944. ATAC-rep1 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3719nnn/GSM3719303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5670837 Sample Accession: GSM3719303 ID: 303719303 11945. M-ATAC-NC-rep2 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3719nnn/GSM3719302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5670836 Sample Accession: GSM3719302 ID: 303719302 11946. M-ATAC-NC-rep1 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3719nnn/GSM3719301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5670835 Sample Accession: GSM3719301 ID: 303719301 11947. M-ATAC-rep4 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BEDGRAPH, BW, COV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3719nnn/GSM3719300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5670834 Sample Accession: GSM3719300 ID: 303719300 11948. M-ATAC-rep3 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BEDGRAPH, BW, COV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3719nnn/GSM3719299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5670833 Sample Accession: GSM3719299 ID: 303719299 11949. M-ATAC-rep2 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BEDGRAPH, BW, COV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3719nnn/GSM3719298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5670832 Sample Accession: GSM3719298 ID: 303719298 11950. M-ATAC-rep1 Organism: Mus musculus Source name: emrbyonic stem cells Platform: GPL17021 Series: GSE129673 FTP download: GEO (BEDGRAPH, BW, COV, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3719nnn/GSM3719297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5670831 Sample Accession: GSM3719297 ID: 303719297 11951. Phf21b_ChIP_mESC_pDox_Replicate2 Organism: Mus musculus Source name: mESC_pDox_Replicate2 Platform: GPL17021 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398994 Sample Accession: GSM2859279 ID: 302859279 11952. Phf21b_ChIP_mESC_pDox_Replicate1 Organism: Mus musculus Source name: mESC_pDox_Replicate1 Platform: GPL17021 Series: GSE106999 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2859nnn/GSM2859278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398993 Sample Accession: GSM2859278 ID: 302859278 11953. Phf21b_RNA_N2A_Day5_Diff_Replicate3 Organism: Mus musculus Source name: N2A_Day5_Diff_Replicate3 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398986 Sample Accession: GSM2859271 ID: 302859271 11954. Phf21b_RNA_N2A_Day5_Diff_Replicate2 Organism: Mus musculus Source name: N2A_Day5_Diff_Replicate2 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398985 Sample Accession: GSM2859270 ID: 302859270 11955. Phf21b_RNA_N2A_Day5_Diff_Replicate1 Organism: Mus musculus Source name: N2A_Day5_Diff_Replicate1 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398984 Sample Accession: GSM2859269 ID: 302859269 11956. Phf21b_RNA_N2A_Day2_Diff_siRNA_Replicate2 Organism: Mus musculus Source name: N2A_Day2_Diff_siRNA_Replicate2 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398983 Sample Accession: GSM2859268 ID: 302859268 11957. Phf21b_RNA_N2A_Day2_Diff_siRNA_Replicate1 Organism: Mus musculus Source name: N2A_Day2_Diff_siRNA_Replicate1 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398982 Sample Accession: GSM2859267 ID: 302859267 11958. Phf21b_RNA_N2A_Day2_Diff_Replicate2 Organism: Mus musculus Source name: N2A_Day2_Diff_Replicate2 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398981 Sample Accession: GSM2859266 ID: 302859266 11959. Phf21b_RNA_N2A_Day2_Diff_Replicate1 Organism: Mus musculus Source name: N2A_Day2_Diff_Replicate1 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398980 Sample Accession: GSM2859265 ID: 302859265 11960. Phf21b_RNA_N2A_Untreated_Replicate2 Organism: Mus musculus Source name: N2A_Untreated_Replicate2 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398979 Sample Accession: GSM2859264 ID: 302859264 11961. Phf21b_RNA_N2A_Untreated_Replicate1 Organism: Mus musculus Source name: N2A_Untreated_Replicate1 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398978 Sample Accession: GSM2859263 ID: 302859263 11962. Phf21b_RNA_mESC_pDox_Replicate5 Organism: Mus musculus Source name: mESC_pDox_Replicate5 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398977 Sample Accession: GSM2859262 ID: 302859262 11963. Phf21b_RNA_mESC_pDox_Replicate4 Organism: Mus musculus Source name: mESC_pDox_Replicate4 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398976 Sample Accession: GSM2859261 ID: 302859261 11964. Phf21b_RNA_mESC_pDox_Replicate3 Organism: Mus musculus Source name: mESC_pDox_Replicate3 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398975 Sample Accession: GSM2859260 ID: 302859260 11965. Phf21b_RNA_mESC_pDox_Replicate2 Organism: Mus musculus Source name: mESC_pDox_Replicate2 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398974 Sample Accession: GSM2859259 ID: 302859259 11966. Phf21b_RNA_mESC_pDox_Replicate1 Organism: Mus musculus Source name: mESC_pDox_Replicate1 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398973 Sample Accession: GSM2859258 ID: 302859258 11967. Phf21b_RNA_mESC_mDox_Replicate5 Organism: Mus musculus Source name: mESC_mDox_Replicate5 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398972 Sample Accession: GSM2859257 ID: 302859257 11968. Phf21b_RNA_mESC_mDox_Replicate4 Organism: Mus musculus Source name: mESC_mDox_Replicate4 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398971 Sample Accession: GSM2859256 ID: 302859256 11969. Phf21b_RNA_mESC_mDox_Replicate3 Organism: Mus musculus Source name: mESC_mDox_Replicate3 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398970 Sample Accession: GSM2859255 ID: 302859255 11970. Phf21b_RNA_mESC_mDox_Replicate2 Organism: Mus musculus Source name: mESC_mDox_Replicate2 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398969 Sample Accession: GSM2859254 ID: 302859254 11971. Phf21b_RNA_mESC_mDox_Replicate1 Organism: Mus musculus Source name: mESC_mDox_Replicate1 Platform: GPL17021 Series: GSE106999 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3398968 Sample Accession: GSM2859253 ID: 302859253 11972. TSC_ATACseq_rep2 Organism: Mus musculus Source name: Trophoblast stem cells Platform: GPL19057 Series: GSE110950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3730293 Sample Accession: GSM3019351 ID: 303019351 11973. TSC_ATACseq_rep1 Organism: Mus musculus Source name: Trophoblast stem cells Platform: GPL19057 Series: GSE110950 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3019nnn/GSM3019350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3730292 Sample Accession: GSM3019350 ID: 303019350 11974. ESC_ATACseq_rep2 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL19057 Series: GSE110950 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3730291 Sample Accession: GSM3019349 ID: 303019349 11975. ESC_ATACseq_rep1 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL19057 Series: GSE110950 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3019nnn/GSM3019348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3730290 Sample Accession: GSM3019348 ID: 303019348 11976. OCI-Ly1-CONTROL-sg2-02 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-CONTROL-sg2 Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608900 Sample Accession: GSM3984198 ID: 303984198 11977. OCI-Ly1-CONTROL-sg2-01 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-CONTROL-sg2 Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608899 Sample Accession: GSM3984197 ID: 303984197 11978. OCI-Ly1-CONTROL-sg1-02 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-CONTROL-sg1 Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608898 Sample Accession: GSM3984196 ID: 303984196 11979. OCI-Ly1-CONTROL-sg1-01 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-CONTROL-sg1 Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608897 Sample Accession: GSM3984195 ID: 303984195 11980. OCI-Ly1-parental-02 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-parental Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608896 Sample Accession: GSM3984194 ID: 303984194 11981. OCI-Ly1-parental-01 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-parental Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608895 Sample Accession: GSM3984193 ID: 303984193 11982. OCI-Ly1-ID3-sg2-02 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-ID3-sg2 Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608894 Sample Accession: GSM3984192 ID: 303984192 11983. OCI-Ly1-ID3-sg2-01 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-ID3-sg2 Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608893 Sample Accession: GSM3984191 ID: 303984191 11984. OCI-Ly1-ID3-sg1-02 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-ID3-sg1 Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608892 Sample Accession: GSM3984190 ID: 303984190 11985. OCI-Ly1-ID3-sg1-01 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-ID3-sg1 Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608891 Sample Accession: GSM3984189 ID: 303984189 11986. OCI-Ly1-vene-resistant-02 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-vene-resistant Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608890 Sample Accession: GSM3984188 ID: 303984188 11987. OCI-Ly1-vene-resistant-01 [ATAC-seq] Organism: Homo sapiens Source name: OCI-Ly1-vene-resistant Platform: GPL18573 Series: GSE128563 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3984nnn/GSM3984187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6608889 Sample Accession: GSM3984187 ID: 303984187 11988. WT_B_Dox24h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862692 Sample Accession: GSM3426496 ID: 303426496 11989. WT_B_Dox12h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862691 Sample Accession: GSM3426495 ID: 303426495 11990. WT_B_Dox6h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862690 Sample Accession: GSM3426494 ID: 303426494 11991. WT_B_Dox3h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862689 Sample Accession: GSM3426493 ID: 303426493 11992. WT_B_Con24h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426492/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862688 Sample Accession: GSM3426492 ID: 303426492 11993. WT_B_Con12h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862687 Sample Accession: GSM3426491 ID: 303426491 11994. WT_B_Con6h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862686 Sample Accession: GSM3426490 ID: 303426490 11995. WT_B_Con3h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862685 Sample Accession: GSM3426489 ID: 303426489 11996. WT_B_Con0h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862684 Sample Accession: GSM3426488 ID: 303426488 11997. WT_A_Dox24h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862683 Sample Accession: GSM3426487 ID: 303426487 11998. WT_A_Dox12h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862682 Sample Accession: GSM3426486 ID: 303426486 11999. WT_A_Dox6h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426485/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862681 Sample Accession: GSM3426485 ID: 303426485 12000. WT_A_Dox3h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426484/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862680 Sample Accession: GSM3426484 ID: 303426484 12001. WT_A_Con24h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426483/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862679 Sample Accession: GSM3426483 ID: 303426483 12002. WT_A_Con12h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862678 Sample Accession: GSM3426482 ID: 303426482 12003. WT_A_Con6h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862677 Sample Accession: GSM3426481 ID: 303426481 12004. WT_A_Con3h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862676 Sample Accession: GSM3426480 ID: 303426480 12005. WT_A_Con0h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862675 Sample Accession: GSM3426479 ID: 303426479 12006. MA9_B_Dox24h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862674 Sample Accession: GSM3426478 ID: 303426478 12007. MA9_B_Dox12h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426477/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862673 Sample Accession: GSM3426477 ID: 303426477 12008. MA9_B_Dox6h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862672 Sample Accession: GSM3426476 ID: 303426476 12009. MA9_B_Dox3h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862671 Sample Accession: GSM3426475 ID: 303426475 12010. MA9_B_Con24h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862670 Sample Accession: GSM3426474 ID: 303426474 12011. MA9_B_Con12h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862669 Sample Accession: GSM3426473 ID: 303426473 12012. MA9_B_Con6h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862668 Sample Accession: GSM3426472 ID: 303426472 12013. MA9_B_Con3h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862667 Sample Accession: GSM3426471 ID: 303426471 12014. MA9_B_Con0h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862666 Sample Accession: GSM3426470 ID: 303426470 12015. MA9_A_Dox24h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426469/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862665 Sample Accession: GSM3426469 ID: 303426469 12016. MA9_A_Dox12h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862664 Sample Accession: GSM3426468 ID: 303426468 12017. MA9_A_Dox6h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862663 Sample Accession: GSM3426467 ID: 303426467 12018. MA9_A_Dox3h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426466/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862662 Sample Accession: GSM3426466 ID: 303426466 12019. MA9_A_Con24h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426465/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862661 Sample Accession: GSM3426465 ID: 303426465 12020. MA9_A_Con12h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862660 Sample Accession: GSM3426464 ID: 303426464 12021. MA9_A_Con6h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862659 Sample Accession: GSM3426463 ID: 303426463 12022. MA9_A_Con3h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862658 Sample Accession: GSM3426462 ID: 303426462 12023. MA9_A_Con0h ATAC-Seq Organism: Mus musculus Source name: bone marrow Platform: GPL21273 Series: GSE121121 GSE121123 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3426nnn/GSM3426461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4862657 Sample Accession: GSM3426461 ID: 303426461 12024. ATAC-seq maize B73input rep2 Organism: Zea mays Source name: B73 seedling Platform: GPL20156 Series: GSE120304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4727416 Sample Accession: GSM3398049 ID: 303398049 12025. ATAC-seq maize B73input rep1 Organism: Zea mays Source name: B73 seedling Platform: GPL20156 Series: GSE120304 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4727415 Sample Accession: GSM3398048 ID: 303398048 12026. ATAC-seq maize B73Ear rep1 Organism: Zea mays Source name: B73 ear Platform: GPL20156 Series: GSE120304 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3398nnn/GSM3398047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4727414 Sample Accession: GSM3398047 ID: 303398047 12027. ATAC-seq maize B73Leaf rep1 Organism: Zea mays Source name: B73 leaf Platform: GPL20156 Series: GSE120304 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3398nnn/GSM3398046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4727413 Sample Accession: GSM3398046 ID: 303398046 12028. iPSC_2 (ATAC-Seq) Organism: Mus musculus Source name: induced pluripotent stem cells Platform: GPL21103 Series: GSE127930 GSE127933 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3656nnn/GSM3656758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5485796 Sample Accession: GSM3656758 ID: 303656758 12029. iPSC_1 (ATAC-Seq) Organism: Mus musculus Source name: induced pluripotent stem cells Platform: GPL21103 Series: GSE127930 GSE127933 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3656nnn/GSM3656757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5485795 Sample Accession: GSM3656757 ID: 303656757 12030. D3_Tox4_siRNA_DOX_2 (ATAC-Seq) Organism: Mus musculus Source name: MEF reprogramming intermediate Platform: GPL21103 Series: GSE127930 GSE127933 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3656nnn/GSM3656756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5485794 Sample Accession: GSM3656756 ID: 303656756 12031. D3_Tox4_siRNA_DOX_1 (ATAC-Seq) Organism: Mus musculus Source name: MEF reprogramming intermediate Platform: GPL21103 Series: GSE127930 GSE127933 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3656nnn/GSM3656755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5485793 Sample Accession: GSM3656755 ID: 303656755 12032. D3_Control_siRNA_DOX_2 (ATAC-Seq) Organism: Mus musculus Source name: MEF reprogramming intermediate Platform: GPL21103 Series: GSE127930 GSE127933 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3656nnn/GSM3656754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5485792 Sample Accession: GSM3656754 ID: 303656754 12033. D3_Control_siRNA_DOX_1 (ATAC-Seq) Organism: Mus musculus Source name: MEF reprogramming intermediate Platform: GPL21103 Series: GSE127930 GSE127933 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3656nnn/GSM3656753/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5485791 Sample Accession: GSM3656753 ID: 303656753 12034. D0_MEF_2 (ATAC-Seq) Organism: Mus musculus Source name: MEF Platform: GPL21103 Series: GSE127930 GSE127933 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3656nnn/GSM3656752/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5485790 Sample Accession: GSM3656752 ID: 303656752 12035. D0_MEF_1 (ATAC-Seq) Organism: Mus musculus Source name: MEF Platform: GPL21103 Series: GSE127930 GSE127933 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3656nnn/GSM3656751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5485789 Sample Accession: GSM3656751 ID: 303656751 12036. ATAC-seq KB IL1 5Z Organism: Homo sapiens Source name: KB cells Platform: GPL11154 Series: GSE134434 GSE134436 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3946nnn/GSM3946568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6457577 Sample Accession: GSM3946568 ID: 303946568 12037. ATAC-seq KB 5Z Organism: Homo sapiens Source name: KB cells Platform: GPL11154 Series: GSE134434 GSE134436 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3946nnn/GSM3946567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6457576 Sample Accession: GSM3946567 ID: 303946567 12038. ATAC-seq KB IL1 Organism: Homo sapiens Source name: KB cells Platform: GPL11154 Series: GSE134434 GSE134436 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3946nnn/GSM3946566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6457575 Sample Accession: GSM3946566 ID: 303946566 12039. ATAC-seq KB Organism: Homo sapiens Source name: KB cells Platform: GPL11154 Series: GSE134434 GSE134436 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3946nnn/GSM3946565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6457574 Sample Accession: GSM3946565 ID: 303946565 12040. ATAC-seq input Organism: Mus musculus Source name: mouse genome Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780622 Sample Accession: GSM4048700 ID: 304048700 12041. ATAC-seq E12.5 replicate 3 Organism: Mus musculus Source name: forelimb bud at E12.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048699/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780621 Sample Accession: GSM4048699 ID: 304048699 12042. ATAC-seq E12.5 replicate 2 Organism: Mus musculus Source name: forelimb bud at E12.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780620 Sample Accession: GSM4048698 ID: 304048698 12043. ATAC-seq E12.5 replicate 1 Organism: Mus musculus Source name: forelimb bud at E12.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780619 Sample Accession: GSM4048697 ID: 304048697 12044. ATAC-seq E11.5 replicate 3 Organism: Mus musculus Source name: forelimb bud at E11.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780618 Sample Accession: GSM4048696 ID: 304048696 12045. ATAC-seq E11.5 replicate 2 Organism: Mus musculus Source name: forelimb bud at E11.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780617 Sample Accession: GSM4048695 ID: 304048695 12046. ATAC-seq E11.5 replicate 1 Organism: Mus musculus Source name: forelimb bud at E11.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780616 Sample Accession: GSM4048694 ID: 304048694 12047. ATAC-seq E10.5 replicate 3 Organism: Mus musculus Source name: forelimb bud at E10.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780615 Sample Accession: GSM4048693 ID: 304048693 12048. ATAC-seq E10.5 replicate 2 Organism: Mus musculus Source name: forelimb bud at E10.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780614 Sample Accession: GSM4048692 ID: 304048692 12049. ATAC-seq E10.5 replicate 1 Organism: Mus musculus Source name: forelimb bud at E10.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780613 Sample Accession: GSM4048691 ID: 304048691 12050. ATAC-seq E09.5 replicate 3 Organism: Mus musculus Source name: forelimb bud at E09.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780612 Sample Accession: GSM4048690 ID: 304048690 12051. ATAC-seq E09.5 replicate 2 Organism: Mus musculus Source name: forelimb bud at E09.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780611 Sample Accession: GSM4048689 ID: 304048689 12052. ATAC-seq E09.5 replicate 1 Organism: Mus musculus Source name: forelimb bud at E09.5 Platform: GPL21273 Series: GSE136415 GSE136445 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4048nnn/GSM4048688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6780610 Sample Accession: GSM4048688 ID: 304048688 12053. Fetal (E12.5) ventricle cardiomyocyte atac-seq rep2 Organism: Mus musculus Source name: ventricle heart cardiomyoctes Platform: GPL19057 Series: GSE124008 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291702 Sample Accession: GSM3579630 ID: 303579630 12054. Fetal (E12.5) ventricle cardiomyocyte atac-seq rep1 Organism: Mus musculus Source name: ventricle heart cardiomyoctes Platform: GPL19057 Series: GSE124008 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291701 Sample Accession: GSM3579629 ID: 303579629 12055. ATAC-seq 1R Rep #2 Organism: Arabidopsis thaliana Source name: ATAC-seq 1R Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6081144 Sample Accession: GSM3895496 ID: 303895496 12056. ATAC-seq 1R Rep #1 Organism: Arabidopsis thaliana Source name: ATAC-seq 1R Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6081143 Sample Accession: GSM3895495 ID: 303895495 12057. ATAC-seq 9HS Rep #2 Organism: Arabidopsis thaliana Source name: 7 day-old seedling root tissue Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5052463 Sample Accession: GSM3485773 ID: 303485773 12058. ATAC-seq 9NS Rep #2 Organism: Arabidopsis thaliana Source name: 7 day-old seedling root tissue Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5052462 Sample Accession: GSM3485772 ID: 303485772 12059. ATAC-seq 2HS Rep #2 Organism: Arabidopsis thaliana Source name: 7 day-old seedling root tissue Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5052461 Sample Accession: GSM3485771 ID: 303485771 12060. ATAC-seq 2NS Rep #2 Organism: Arabidopsis thaliana Source name: 7 day-old seedling root tissue Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5052460 Sample Accession: GSM3485770 ID: 303485770 12061. ATAC-seq 9HS Rep #1 Organism: Arabidopsis thaliana Source name: 7 day-old seedling root tissue Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5052459 Sample Accession: GSM3485769 ID: 303485769 12062. ATAC-seq 9NS Rep #1 Organism: Arabidopsis thaliana Source name: 7 day-old seedling root tissue Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5052458 Sample Accession: GSM3485768 ID: 303485768 12063. ATAC-seq 2HS Rep #1 Organism: Arabidopsis thaliana Source name: 7 day-old seedling root tissue Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5052457 Sample Accession: GSM3485767 ID: 303485767 12064. ATAC-seq 2NS Rep #1 Organism: Arabidopsis thaliana Source name: 7 day-old seedling root tissue Platform: GPL21785 Series: GSE122804 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5052456 Sample Accession: GSM3485766 ID: 303485766 12065. Rux_2GM [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124121 Sample Accession: GSM3507302 ID: 303507302 12066. Tram_2GM [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124120 Sample Accession: GSM3507301 ID: 303507301 12067. Wort_2GM [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124119 Sample Accession: GSM3507300 ID: 303507300 12068. Cont_2GM [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124118 Sample Accession: GSM3507299 ID: 303507299 12069. Cont_2M [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124117 Sample Accession: GSM3507298 ID: 303507298 12070. Mo2 [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124116 Sample Accession: GSM3507297 ID: 303507297 12071. Rux_1GM [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124115 Sample Accession: GSM3507296 ID: 303507296 12072. Tram_1GM [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124114 Sample Accession: GSM3507295 ID: 303507295 12073. Wort_1GM [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124113 Sample Accession: GSM3507294 ID: 303507294 12074. Cont_1GM [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124112 Sample Accession: GSM3507293 ID: 303507293 12075. Cont_1M [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124111 Sample Accession: GSM3507292 ID: 303507292 12076. Mo1 [ATAC-seq] Organism: Homo sapiens Source name: Human peripheral blood monocytes Platform: GPL20301 Series: GSE123569 GSE123574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124110 Sample Accession: GSM3507291 ID: 303507291 12077. mouse liver ATAC-seq LKO6 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846440 Sample Accession: GSM3770631 ID: 303770631 12078. mouse liver ATAC-seq LKO5 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846439 Sample Accession: GSM3770630 ID: 303770630 12079. mouse liver ATAC-seq LKO4 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846438 Sample Accession: GSM3770629 ID: 303770629 12080. mouse liver ATAC-seq LKO3 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846437 Sample Accession: GSM3770628 ID: 303770628 12081. mouse liver ATAC-seq LKO2 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846436 Sample Accession: GSM3770627 ID: 303770627 12082. mouse liver ATAC-seq LKO1 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846435 Sample Accession: GSM3770626 ID: 303770626 12083. mouse liver ATAC-seq Ctrl6 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846434 Sample Accession: GSM3770625 ID: 303770625 12084. mouse liver ATAC-seq Ctrl5 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846433 Sample Accession: GSM3770624 ID: 303770624 12085. mouse liver ATAC-seq Ctrl4 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846432 Sample Accession: GSM3770623 ID: 303770623 12086. mouse liver ATAC-seq Ctrl3 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846431 Sample Accession: GSM3770622 ID: 303770622 12087. mouse liver ATAC-seq Ctrl2 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846430 Sample Accession: GSM3770621 ID: 303770621 12088. mouse liver ATAC-seq Ctrl1 Organism: Mus musculus Source name: liver Platform: GPL24247 Series: GSE131336 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5846429 Sample Accession: GSM3770620 ID: 303770620 12089. MADRK27M121418-scATACseq Organism: Mus musculus Source name: Pediatric brain glioma Platform: GPL19057 Series: GSE131675 GSE131873 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3823nnn/GSM3823861/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5912923 Sample Accession: GSM3823861 ID: 303823861 12090. MADRK27M113018-scATACseq Organism: Mus musculus Source name: Pediatric brain glioma Platform: GPL19057 Series: GSE131675 GSE131873 FTP download: GEO (BED, MTX, TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3823nnn/GSM3823860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5912922 Sample Accession: GSM3823860 ID: 303823860 12091. ATAC-seq_E11.5_lib5 Organism: Mus musculus Source name: Inner ear E11.5 wild type Platform: GPL17021 Series: GSE131165 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5828016 Sample Accession: GSM3764947 ID: 303764947 12092. ATAC-seq_E11.5_lib4 Organism: Mus musculus Source name: Inner ear E11.5 wild type Platform: GPL17021 Series: GSE131165 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5828015 Sample Accession: GSM3764946 ID: 303764946 12093. ATAC-seq_E11.5_lib3 Organism: Mus musculus Source name: Inner ear E11.5 wild type Platform: GPL17021 Series: GSE131165 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5828014 Sample Accession: GSM3764945 ID: 303764945 12094. ATAC-seq_E11.5_lib2 Organism: Mus musculus Source name: Inner ear E11.5 wild type Platform: GPL17021 Series: GSE131165 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5828013 Sample Accession: GSM3764944 ID: 303764944 12095. ATAC-seq_E11.5_lib1 Organism: Mus musculus Source name: Inner ear E11.5 wild type Platform: GPL17021 Series: GSE131165 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5828012 Sample Accession: GSM3764943 ID: 303764943 12096. ATAC_p53on_rep2_J15-2 Organism: Mus musculus Source name: KPsh Platform: GPL17021 Series: GSE114263 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3138nnn/GSM3138605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061602 Sample Accession: GSM3138605 ID: 303138605 12097. ATAC_p53on_rep1_J15-1 Organism: Mus musculus Source name: KPsh Platform: GPL17021 Series: GSE114263 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3138nnn/GSM3138604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061601 Sample Accession: GSM3138604 ID: 303138604 12098. ATAC_DMSO_rep2_J14-2 Organism: Mus musculus Source name: KPsh Platform: GPL17021 Series: GSE114263 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3138nnn/GSM3138603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061600 Sample Accession: GSM3138603 ID: 303138603 12099. ATAC_DMSO_rep1_J14-1 Organism: Mus musculus Source name: KPsh Platform: GPL17021 Series: GSE114263 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3138nnn/GSM3138602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061599 Sample Accession: GSM3138602 ID: 303138602 12100. ATAC_aKG_rep2_J13-2 Organism: Mus musculus Source name: KPsh Platform: GPL17021 Series: GSE114263 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3138nnn/GSM3138601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061598 Sample Accession: GSM3138601 ID: 303138601 12101. ATAC_aKG_rep1_J13-1 Organism: Mus musculus Source name: KPsh Platform: GPL17021 Series: GSE114263 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3138nnn/GSM3138600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061597 Sample Accession: GSM3138600 ID: 303138600 12102. ATAC-seq_ESC_2 Organism: Mus musculus Source name: ESC Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979886 Sample Accession: GSM3106258 ID: 303106258 12103. ATAC-seq_ESC_1 Organism: Mus musculus Source name: ESC Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979885 Sample Accession: GSM3106257 ID: 303106257 12104. ATAC-seq_DAY9_2 Organism: Mus musculus Source name: DAY9 Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979884 Sample Accession: GSM3106256 ID: 303106256 12105. ATAC-seq_DAY9_1 Organism: Mus musculus Source name: DAY9 Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979883 Sample Accession: GSM3106255 ID: 303106255 12106. ATAC-seq_DAY6_2 Organism: Mus musculus Source name: DAY6 Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979882 Sample Accession: GSM3106254 ID: 303106254 12107. ATAC-seq_DAY6_1 Organism: Mus musculus Source name: DAY6 Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979881 Sample Accession: GSM3106253 ID: 303106253 12108. ATAC-seq_DAY3_2 Organism: Mus musculus Source name: DAY3 Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979880 Sample Accession: GSM3106252 ID: 303106252 12109. ATAC-seq_DAY3_1 Organism: Mus musculus Source name: DAY3 Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979879 Sample Accession: GSM3106251 ID: 303106251 12110. ATAC-seq_MEF_2 Organism: Mus musculus Source name: MEF Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979878 Sample Accession: GSM3106250 ID: 303106250 12111. ATAC-seq_MEF_1 Organism: Mus musculus Source name: MEF Platform: GPL17021 Series: GSE113428 GSE113431 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3106nnn/GSM3106249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3979877 Sample Accession: GSM3106249 ID: 303106249 12112. DN2 Organism: Homo sapiens Source name: breast epithelial cell line Platform: GPL18573 Series: GSE132046 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3839nnn/GSM3839711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5939649 Sample Accession: GSM3839711 ID: 303839711 12113. DN1 Organism: Homo sapiens Source name: breast epithelial cell line Platform: GPL18573 Series: GSE132046 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3839nnn/GSM3839710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5939648 Sample Accession: GSM3839710 ID: 303839710 12114. GFP2 Organism: Homo sapiens Source name: breast epithelial cell line Platform: GPL18573 Series: GSE132046 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3839nnn/GSM3839709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5939647 Sample Accession: GSM3839709 ID: 303839709 12115. GFP1 Organism: Homo sapiens Source name: breast epithelial cell line Platform: GPL18573 Series: GSE132046 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3839nnn/GSM3839708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5939646 Sample Accession: GSM3839708 ID: 303839708 12116. Y_ATAC_6 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692563 Sample Accession: GSM4025772 ID: 304025772 12117. Y_ATAC_4 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692562 Sample Accession: GSM4025771 ID: 304025771 12118. Y_ATAC_3 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692561 Sample Accession: GSM4025770 ID: 304025770 12119. Y_ATAC_2 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692560 Sample Accession: GSM4025769 ID: 304025769 12120. Y_ATAC_1 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692559 Sample Accession: GSM4025768 ID: 304025768 12121. O_ATAC_6 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692558 Sample Accession: GSM4025767 ID: 304025767 12122. O_ATAC_4 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692557 Sample Accession: GSM4025766 ID: 304025766 12123. O_ATAC_2 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692556 Sample Accession: GSM4025765 ID: 304025765 12124. O_ATAC_1 Organism: Homo sapiens Source name: Human primary keratinocytes Platform: GPL16791 Series: GSE135675 GSE135680 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4025nnn/GSM4025764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6692555 Sample Accession: GSM4025764 ID: 304025764 12125. NSD2_Low_ATAC-seq-merged Organism: Homo sapiens Source name: TKO Platform: GPL16791 Series: GSE131651 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5883984 Sample Accession: GSM3791784 ID: 303791784 12126. NSD2_High_ATAC-seq-merged Organism: Homo sapiens Source name: NTKO Platform: GPL16791 Series: GSE131651 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3791nnn/GSM3791783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5883983 Sample Accession: GSM3791783 ID: 303791783 12127. TGFβ #3 ATAC-seq Organism: Mus musculus Source name: Primary Cardiac Fibroblasts Platform: GPL17021 Series: GSE135530 GSE135531 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4013nnn/GSM4013823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6669853 Sample Accession: GSM4013823 ID: 304013823 12128. TGFβ #2 ATAC-seq Organism: Mus musculus Source name: Primary Cardiac Fibroblasts Platform: GPL17021 Series: GSE135530 GSE135531 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4013nnn/GSM4013822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6669852 Sample Accession: GSM4013822 ID: 304013822 12129. TGFβ #1 ATAC-seq Organism: Mus musculus Source name: Primary Cardiac Fibroblasts Platform: GPL17021 Series: GSE135530 GSE135531 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4013nnn/GSM4013821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6669851 Sample Accession: GSM4013821 ID: 304013821 12130. Veh #3 ATAC-seq Organism: Mus musculus Source name: Primary Cardiac Fibroblasts Platform: GPL17021 Series: GSE135530 GSE135531 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4013nnn/GSM4013820/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6669850 Sample Accession: GSM4013820 ID: 304013820 12131. Veh #2 ATAC-seq Organism: Mus musculus Source name: Primary Cardiac Fibroblasts Platform: GPL17021 Series: GSE135530 GSE135531 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4013nnn/GSM4013819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6669849 Sample Accession: GSM4013819 ID: 304013819 12132. Veh #1 ATAC-seq Organism: Mus musculus Source name: Primary Cardiac Fibroblasts Platform: GPL17021 Series: GSE135530 GSE135531 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM4013nnn/GSM4013818/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6669848 Sample Accession: GSM4013818 ID: 304013818 12133. ATAC_Seq_Rep_3 Organism: Homo sapiens Source name: POP92 Platform: GPL16791 Series: GSE113176 Sample Accession: GSM3098556 ID: 303098556 12134. ATAC_Seq_Rep_2 Organism: Homo sapiens Source name: POP92 Platform: GPL16791 Series: GSE113176 Sample Accession: GSM3098555 ID: 303098555 12135. ATAC_Seq_Rep_1 Organism: Homo sapiens Source name: POP92 Platform: GPL16791 Series: GSE113176 Sample Accession: GSM3098554 ID: 303098554 12136. ATAC-seq_KO_Bcl11b_rep3 Organism: Mus musculus Source name: Bcl11b deficient Treg cells Platform: GPL17021 Series: GSE120948 GSE130059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5710504 Sample Accession: GSM3731178 ID: 303731178 12137. ATAC-seq_KO_Bcl11b_rep2 Organism: Mus musculus Source name: Bcl11b deficient Treg cells Platform: GPL17021 Series: GSE120948 GSE130059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5710503 Sample Accession: GSM3731177 ID: 303731177 12138. ATAC-seq_KO_Bcl11b_rep1 Organism: Mus musculus Source name: Bcl11b deficient Treg cells Platform: GPL17021 Series: GSE120948 GSE130059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5710502 Sample Accession: GSM3731176 ID: 303731176 12139. ATAC-seq_WT_Bcl11b_rep3 Organism: Mus musculus Source name: Bcl11b sufficient Treg cells Platform: GPL17021 Series: GSE120948 GSE130059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5710501 Sample Accession: GSM3731175 ID: 303731175 12140. ATAC-seq_WT_Bcl11b_rep2 Organism: Mus musculus Source name: Bcl11b sufficient Treg cells Platform: GPL17021 Series: GSE120948 GSE130059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5710500 Sample Accession: GSM3731174 ID: 303731174 12141. ATAC-seq_WT_Bcl11b_rep1 Organism: Mus musculus Source name: Bcl11b sufficient Treg cells Platform: GPL17021 Series: GSE120948 GSE130059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5710499 Sample Accession: GSM3731173 ID: 303731173 12142. unstimulated CD8-positive dendritic cells_Rep2 (ATAC-seq) Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL17021 Series: GSE125340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3574nnn/GSM3574316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5278237 Sample Accession: GSM3574316 ID: 303574316 12143. unstimulated CD8-positive dendritic cells_Rep1 (ATAC-seq) Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL17021 Series: GSE125340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3569nnn/GSM3569295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5275812 Sample Accession: GSM3569295 ID: 303569295 12144. mm DC UT ATAC Rep 2 Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL17021 Series: GSE106743 GSE106754 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2849nnn/GSM2849747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3381148 Sample Accession: GSM2849747 ID: 302849747 12145. mm DC UT ATAC Rep 1 Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL17021 Series: GSE106743 GSE106754 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2849nnn/GSM2849746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3381147 Sample Accession: GSM2849746 ID: 302849746 12146. IFNB-stimulated dendritic cell_90 min_Rep2 (ChIP-seq) Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL19057 Series: GSE125340 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3569nnn/GSM3569294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5235210 Sample Accession: GSM3569294 ID: 303569294 12147. IFNB-stimulated dendritic cell_90 min_Rep1 (ChIP-seq) Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL19057 Series: GSE125340 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3569nnn/GSM3569293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5235209 Sample Accession: GSM3569293 ID: 303569293 12148. CpG-stimulated dendritic cell_90 min_Rep2 (ChIP-seq) Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL19057 Series: GSE125340 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3569nnn/GSM3569292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5235212 Sample Accession: GSM3569292 ID: 303569292 12149. CpG-stimulated dendritic cell_90 min_Rep1 (ChIP-seq) Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL19057 Series: GSE125340 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3569nnn/GSM3569291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5235211 Sample Accession: GSM3569291 ID: 303569291 12150. pIC-stimulated dendritic cell_90 min_Rep2 (ChIP-seq) Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL19057 Series: GSE125340 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3569nnn/GSM3569290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5235214 Sample Accession: GSM3569290 ID: 303569290 12151. pIC-stimulated dendritic cell_90 min_Rep1 (ChIP-seq) Organism: Mus musculus Source name: dendritic cells from the spleen Platform: GPL19057 Series: GSE125340 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3569nnn/GSM3569289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5235213 Sample Accession: GSM3569289 ID: 303569289 12152. LCH_S12_4 [ATAC-seq] Organism: Homo sapiens Source name: LCH cells from a lymph node biopsy, enriched for LCH-S12 cell subset using FACS, replicate 2 Platform: GPL20301 Series: GSE133706 GSE133785 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927313/ Sample Accession: GSM3927313 ID: 303927313 12153. LCH_S12_3 [ATAC-seq] Organism: Homo sapiens Source name: LCH cells from a lymph node biopsy, enriched for LCH-S12 cell subset using FACS, replicate 1 Platform: GPL20301 Series: GSE133706 GSE133785 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927312/ Sample Accession: GSM3927312 ID: 303927312 12154. LCH_S11_4 [ATAC-seq] Organism: Homo sapiens Source name: LCH cells from a lymph node biopsy, enriched for LCH-S11 cell subset using FACS, replicate 2 Platform: GPL20301 Series: GSE133706 GSE133785 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927311/ Sample Accession: GSM3927311 ID: 303927311 12155. LCH_S11_3 [ATAC-seq] Organism: Homo sapiens Source name: LCH cells from a lymph node biopsy, enriched for LCH-S11 cell subset using FACS, replicate 1 Platform: GPL20301 Series: GSE133706 GSE133785 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927310/ Sample Accession: GSM3927310 ID: 303927310 12156. LCH_S1_4 [ATAC-seq] Organism: Homo sapiens Source name: LCH cells from a lymph node biopsy, enriched for LCH-S1 cell subset using FACS, replicate 2 Platform: GPL20301 Series: GSE133706 GSE133785 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927309/ Sample Accession: GSM3927309 ID: 303927309 12157. LCH_S1_3 [ATAC-seq] Organism: Homo sapiens Source name: LCH cells from a lymph node biopsy, enriched for LCH-S1 cell subset using FACS, replicate 1 Platform: GPL20301 Series: GSE133706 GSE133785 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3927nnn/GSM3927308/ Sample Accession: GSM3927308 ID: 303927308 12158. SMARCA4-K755R-siAP-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716470 Sample Accession: GSM3732045 ID: 303732045 12159. SMARCA4-K755R-siCT-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716469 Sample Accession: GSM3732044 ID: 303732044 12160. SMARCA2-K755R-siAP-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716468 Sample Accession: GSM3732043 ID: 303732043 12161. SMARCA2-K755R-siCT-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716467 Sample Accession: GSM3732042 ID: 303732042 12162. Input_SMARCA-K755R-siAP-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716466 Sample Accession: GSM3732041 ID: 303732041 12163. Input_SMARCA-K755R-siCT-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716465 Sample Accession: GSM3732040 ID: 303732040 12164. SMARCA4-WT-siSOX-ChIPseq Organism: Homo sapiens Source name: hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716464 Sample Accession: GSM3732039 ID: 303732039 12165. SMARCA4-WT-siCT-ChIPseq Organism: Homo sapiens Source name: hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716463 Sample Accession: GSM3732038 ID: 303732038 12166. Input_SMARCA4-WT-siSOX-ChIPseq Organism: Homo sapiens Source name: hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716462 Sample Accession: GSM3732037 ID: 303732037 12167. Input_SMARCA4-WT-siCT-ChIPseq Organism: Homo sapiens Source name: hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716461 Sample Accession: GSM3732036 ID: 303732036 12168. AM-SMARCA2-R1159Q-ChIPseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716460 Sample Accession: GSM3732035 ID: 303732035 12169. AM-SMARCA2-WT-ChIPseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716459 Sample Accession: GSM3732034 ID: 303732034 12170. Input_AM-SMARCA2-R1159Q-ChIPseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716458 Sample Accession: GSM3732033 ID: 303732033 12171. Input_AM-SMARCA2-WT-ChIPseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716457 Sample Accession: GSM3732032 ID: 303732032 12172. SOX3-R1159Q-ChIPseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716456 Sample Accession: GSM3732031 ID: 303732031 12173. SOX3-K755R-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716455 Sample Accession: GSM3732030 ID: 303732030 12174. SOX3-WT-ChIPseq Organism: Homo sapiens Source name: hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716454 Sample Accession: GSM3732029 ID: 303732029 12175. SOX2-R1159Q-ChIPseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716453 Sample Accession: GSM3732028 ID: 303732028 12176. SOX2-K755R-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716452 Sample Accession: GSM3732027 ID: 303732027 12177. SOX2-WT-ChIPseq Organism: Homo sapiens Source name: hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716451 Sample Accession: GSM3732026 ID: 303732026 12178. Input_SOX-R1159Q-ChIPseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716450 Sample Accession: GSM3732025 ID: 303732025 12179. Input_SOX-K755R-ChIPseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716449 Sample Accession: GSM3732024 ID: 303732024 12180. Input_SOX-WT-ChIPseq Organism: Homo sapiens Source name: hNPCs Platform: GPL16791 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716448 Sample Accession: GSM3732023 ID: 303732023 12181. K755R-siAP-rep2-ATACseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716478 Sample Accession: GSM3732053 ID: 303732053 12182. K755R-siAP-rep1-ATACseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716477 Sample Accession: GSM3732052 ID: 303732052 12183. K755R-siCT-rep2-ATACseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716476 Sample Accession: GSM3732051 ID: 303732051 12184. K755R-siCT-rep1-ATACseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3732nnn/GSM3732050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5716475 Sample Accession: GSM3732050 ID: 303732050 12185. R1159Q-rep2-ATACseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3476nnn/GSM3476798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5020221 Sample Accession: GSM3476798 ID: 303476798 12186. R1159Q-rep1-ATACseq Organism: Homo sapiens Source name: R1159Q/+ hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3476nnn/GSM3476797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5020220 Sample Accession: GSM3476797 ID: 303476797 12187. K755R-rep2-ATACseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3476nnn/GSM3476796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5020219 Sample Accession: GSM3476796 ID: 303476796 12188. K755R-rep1-ATACseq Organism: Homo sapiens Source name: K755R/+ hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3476nnn/GSM3476795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5020218 Sample Accession: GSM3476795 ID: 303476795 12189. WT-rep2-ATACseq Organism: Homo sapiens Source name: hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3476nnn/GSM3476794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5020217 Sample Accession: GSM3476794 ID: 303476794 12190. WT-rep1-ATACseq Organism: Homo sapiens Source name: hNPCs Platform: GPL18573 Series: GSE122631 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3476nnn/GSM3476793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5020216 Sample Accession: GSM3476793 ID: 303476793 12191. ATAC-seq_E16.5_Hnf4_DKO_rep2 Organism: Mus musculus Source name: Mouse midgut epithelial cells Platform: GPL21626 Series: GSE128674 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3682nnn/GSM3682112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5554031 Sample Accession: GSM3682112 ID: 303682112 12192. ATAC-seq_E16.5_Hnf4_DKO_rep1 Organism: Mus musculus Source name: Mouse midgut epithelial cells Platform: GPL21626 Series: GSE128674 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3682nnn/GSM3682111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5554030 Sample Accession: GSM3682111 ID: 303682111 12193. ATAC-seq_E16.5_Hnf4_ghet_Control Organism: Mus musculus Source name: Mouse midgut epithelial cells Platform: GPL21626 Series: GSE128674 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3682nnn/GSM3682110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5554029 Sample Accession: GSM3682110 ID: 303682110 12194. 6bKO ATAC-seq 3 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL21493 Series: GSE110378 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3400nnn/GSM3400932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4739447 Sample Accession: GSM3400932 ID: 303400932 12195. 6bKO ATAC-seq 2 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL21493 Series: GSE110378 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3400nnn/GSM3400931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4739446 Sample Accession: GSM3400931 ID: 303400931 12196. 6bKO ATAC-seq 1 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL21493 Series: GSE110378 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3400nnn/GSM3400930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4739445 Sample Accession: GSM3400930 ID: 303400930 12197. Control ATAC-seq 3 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL21493 Series: GSE110378 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3400nnn/GSM3400929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4739444 Sample Accession: GSM3400929 ID: 303400929 12198. Control ATAC-seq 2 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL21493 Series: GSE110378 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3400nnn/GSM3400928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4739443 Sample Accession: GSM3400928 ID: 303400928 12199. Control ATAC-seq 1 Organism: Mus musculus Source name: Hematopoietic Stem Cell Platform: GPL21493 Series: GSE110378 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3400nnn/GSM3400927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4739442 Sample Accession: GSM3400927 ID: 303400927 12200. ATAC-seq-NALM6-3 Organism: Homo sapiens Source name: NALM6 B-ALL cells Platform: GPL18573 Series: GSE126300 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5352382 Sample Accession: GSM3595845 ID: 303595845 12201. ATAC-seq-NALM6-2 Organism: Homo sapiens Source name: NALM6 B-ALL cells Platform: GPL18573 Series: GSE126300 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5352381 Sample Accession: GSM3595844 ID: 303595844 12202. ATAC-seq-NALM6-1 Organism: Homo sapiens Source name: NALM6 B-ALL cells Platform: GPL18573 Series: GSE126300 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5352380 Sample Accession: GSM3595843 ID: 303595843 12203. ATAC-Seq_iPSC-CM_iPSCORE_2_7_UDID045 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938159/ Sample Accession: GSM3938159 ID: 303938159 12204. ATAC-Seq_iPSC-CM_iPSCORE_2_6_UDID029 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938158/ Sample Accession: GSM3938158 ID: 303938158 12205. ATAC-Seq_iPSC-CM_iPSCORE_2_3_UDID067 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938157/ Sample Accession: GSM3938157 ID: 303938157 12206. ATAC-Seq_iPSC-CM_iPSCORE_2_3_UDID020 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938156/ Sample Accession: GSM3938156 ID: 303938156 12207. ATAC-Seq_iPSC-CM_iPSCORE_2_3_UDID044 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938155/ Sample Accession: GSM3938155 ID: 303938155 12208. ATAC-Seq_iPSC-CM_iPSCORE_2_2_UDID053 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938154/ Sample Accession: GSM3938154 ID: 303938154 12209. ATAC-Seq_iPSC-CM_iPSCORE_2_1_UDID048 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938153/ Sample Accession: GSM3938153 ID: 303938153 12210. ATAC-Seq_iPSC-CM_iPSCORE_2_1_UDID007 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938152/ Sample Accession: GSM3938152 ID: 303938152 12211. ATAC-Seq_iPSC-CM_iPSCORE_2_1_UDID043 Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938151/ Sample Accession: GSM3938151 ID: 303938151 12212. ATAC-Seq_iPSC_iPSCORE_2_7_UDID045 Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5983157 Sample Accession: GSM3938150 ID: 303938150 12213. ATAC-Seq_iPSC_iPSCORE_2_3_UDID044 Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5983212 Sample Accession: GSM3938149 ID: 303938149 12214. ATAC-Seq_iPSC_iPSCORE_2_3_UDID020 Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5983159 Sample Accession: GSM3938148 ID: 303938148 12215. ATAC-Seq_iPSC_iPSCORE_2_3_UDID067 Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5983055 Sample Accession: GSM3938147 ID: 303938147 12216. ATAC-Seq_iPSC_iPSCORE_2_2_UDID053 Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5983148 Sample Accession: GSM3938146 ID: 303938146 12217. ATAC-Seq_iPSC_iPSCORE_2_1_UDID007 Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5983114 Sample Accession: GSM3938145 ID: 303938145 12218. ATAC-Seq_iPSC_iPSCORE_2_1_UDID048 Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE133833 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3938nnn/GSM3938144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5983104 Sample Accession: GSM3938144 ID: 303938144 12219. Adult mouse brain cortex, rep 12, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432577 Sample Accession: GSM3938183 ID: 303938183 12220. Adult mouse brain cortex, rep 11, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432575 Sample Accession: GSM3938181 ID: 303938181 12221. Adult mouse brain cortex, rep 10, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432573 Sample Accession: GSM3938179 ID: 303938179 12222. Adult mouse brain cortex, rep 9, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432571 Sample Accession: GSM3938177 ID: 303938177 12223. Adult mouse brain cortex, rep 8, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432569 Sample Accession: GSM3938175 ID: 303938175 12224. Adult mouse brain cortex, rep 7, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432567 Sample Accession: GSM3938173 ID: 303938173 12225. Adult mouse brain cortex, rep 6, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432565 Sample Accession: GSM3938171 ID: 303938171 12226. Adult mouse brain cortex, rep 5, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432563 Sample Accession: GSM3938169 ID: 303938169 12227. Adult mouse brain cortex, rep 4, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432561 Sample Accession: GSM3938167 ID: 303938167 12228. Adult mouse brain cortex, rep 3, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432559 Sample Accession: GSM3938165 ID: 303938165 12229. Adult mouse brain cortex, rep 2, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432557 Sample Accession: GSM3938163 ID: 303938163 12230. Adult mouse brain cortex, rep 1, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6432555 Sample Accession: GSM3938161 ID: 303938161 12231. ATAC_Seq_Background_gDNA_Control Organism: Mus musculus Source name: ATAC-Seq, genomic control Platform: GPL21493 Series: GSE121565 GSE121566 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4910904 Sample Accession: GSM3439285 ID: 303439285 12232. ATAC_Seq_E14_5_Hindlimb Organism: Mus musculus Source name: ATAC-Seq from hindlimb tissue, E14.5 Platform: GPL21493 Series: GSE121565 GSE121566 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3439nnn/GSM3439284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4910903 Sample Accession: GSM3439284 ID: 303439284 12233. ATAC_Seq_E14_5_Forelimb Organism: Mus musculus Source name: ATAC-Seq from forelimb tissue, E14.5 Platform: GPL21493 Series: GSE121565 GSE121566 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3439nnn/GSM3439283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4910902 Sample Accession: GSM3439283 ID: 303439283 12234. ATAC-seq_III-3-MT, rep2 Organism: Homo sapiens Source name: iPSC-CMs Platform: GPL21697 Series: GSE118883 GSE118885 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590595 Sample Accession: GSM3349781 ID: 303349781 12235. ATAC-seq_III-3-MT, rep1 Organism: Homo sapiens Source name: iPSC-CMs Platform: GPL21697 Series: GSE118883 GSE118885 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590594 Sample Accession: GSM3349780 ID: 303349780 12236. ATAC-seq_III-3-WT, rep2 Organism: Homo sapiens Source name: iPSC-CMs Platform: GPL21697 Series: GSE118883 GSE118885 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590593 Sample Accession: GSM3349779 ID: 303349779 12237. ATAC-seq_III-3-WT, rep1 Organism: Homo sapiens Source name: iPSC-CMs Platform: GPL21697 Series: GSE118883 GSE118885 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590592 Sample Accession: GSM3349778 ID: 303349778 12238. KDM2B_CXXCfl_TAM_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401920 Sample Accession: GSM3615655 ID: 303615655 12239. KDM2B_CXXCfl_TAM_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401919 Sample Accession: GSM3615654 ID: 303615654 12240. KDM2B_CXXCfl_TAM_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401918 Sample Accession: GSM3615653 ID: 303615653 12241. KDM2B_CXXCfl_UNT_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401917 Sample Accession: GSM3615652 ID: 303615652 12242. KDM2B_CXXCfl_UNT_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401916 Sample Accession: GSM3615651 ID: 303615651 12243. KDM2B_CXXCfl_UNT_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401915 Sample Accession: GSM3615650 ID: 303615650 12244. KDM2A_CXXCfl_TAM_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401908 Sample Accession: GSM3615643 ID: 303615643 12245. KDM2A_CXXCfl_TAM_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401907 Sample Accession: GSM3615642 ID: 303615642 12246. KDM2A_CXXCfl_TAM_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401906 Sample Accession: GSM3615641 ID: 303615641 12247. KDM2A_CXXCfl_UNT_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401905 Sample Accession: GSM3615640 ID: 303615640 12248. KDM2A_CXXCfl_UNT_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401904 Sample Accession: GSM3615639 ID: 303615639 12249. KDM2A_CXXCfl_UNT_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401903 Sample Accession: GSM3615638 ID: 303615638 12250. KDM2AB_CXXCfl_TAM_ATAC_rep4 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401894 Sample Accession: GSM3615629 ID: 303615629 12251. KDM2AB_CXXCfl_TAM_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401893 Sample Accession: GSM3615628 ID: 303615628 12252. KDM2AB_CXXCfl_TAM_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401892 Sample Accession: GSM3615627 ID: 303615627 12253. KDM2AB_CXXCfl_TAM_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401891 Sample Accession: GSM3615626 ID: 303615626 12254. KDM2AB_CXXCfl_UNT_ATAC_rep4 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401890 Sample Accession: GSM3615625 ID: 303615625 12255. KDM2AB_CXXCfl_UNT_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401889 Sample Accession: GSM3615624 ID: 303615624 12256. KDM2AB_CXXCfl_UNT_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401888 Sample Accession: GSM3615623 ID: 303615623 12257. KDM2AB_CXXCfl_UNT_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401887 Sample Accession: GSM3615622 ID: 303615622 12258. KDM2AB_JmjCfl_TAM_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401880 Sample Accession: GSM3615615 ID: 303615615 12259. KDM2AB_JmjCfl_TAM_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401879 Sample Accession: GSM3615614 ID: 303615614 12260. KDM2AB_JmjCfl_TAM_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, tamoxifen treated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401878 Sample Accession: GSM3615613 ID: 303615613 12261. KDM2AB_JmjCfl_UNT_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401877 Sample Accession: GSM3615612 ID: 303615612 12262. KDM2AB_JmjCfl_UNT_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401876 Sample Accession: GSM3615611 ID: 303615611 12263. KDM2AB_JmjCfl_UNT_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic stem cells with Drosophila SG4 cell spike-in, untreated, ATAC-seq Platform: GPL19057 Series: GSE126863 GSE126864 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5401875 Sample Accession: GSM3615610 ID: 303615610 12264. ATAC-Seq Control DNA Organism: Danaus plexippus Source name: 6 brains Platform: GPL25611 Series: GSE122445 GSE122447 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3466nnn/GSM3466667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5001249 Sample Accession: GSM3466667 ID: 303466667 12265. ATAC-Seq DCyc-like ZT16 rep1 rep2 Organism: Danaus plexippus Source name: 3 brains per rep Platform: GPL25611 Series: GSE122445 GSE122447 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3466nnn/GSM3466666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5001248 Sample Accession: GSM3466666 ID: 303466666 12266. ATAC-Seq DCyc-like ZT04 rep1 rep2 Organism: Danaus plexippus Source name: 3 brains per rep Platform: GPL25611 Series: GSE122445 GSE122447 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3466nnn/GSM3466665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5001247 Sample Accession: GSM3466665 ID: 303466665 12267. ATAC-Seq ClkKO ZT16 rep1 rep2 Organism: Danaus plexippus Source name: 3 brains per rep Platform: GPL25611 Series: GSE122445 GSE122447 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3466nnn/GSM3466664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5001246 Sample Accession: GSM3466664 ID: 303466664 12268. ATAC-Seq ClkKO ZT04 rep1 rep2 Organism: Danaus plexippus Source name: 3 brains per rep Platform: GPL25611 Series: GSE122445 GSE122447 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3466nnn/GSM3466663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5001245 Sample Accession: GSM3466663 ID: 303466663 12269. ATAC-Seq WT ZT16 rep1 rep2 Organism: Danaus plexippus Source name: 3 brains per rep Platform: GPL25611 Series: GSE122445 GSE122447 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3466nnn/GSM3466662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5001244 Sample Accession: GSM3466662 ID: 303466662 12270. ATAC-Seq WT ZT04 rep1 rep2 Organism: Danaus plexippus Source name: 3 brains per rep Platform: GPL25611 Series: GSE122445 GSE122447 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3466nnn/GSM3466661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5001243 Sample Accession: GSM3466661 ID: 303466661 12271. ATAC-Seq NF-YA KD, Rep 2 Organism: Mus musculus Source name: mouse Embryonic Stem Cells (ESCs) Platform: GPL19057 Series: GSE115110 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5823893 Sample Accession: GSM3763081 ID: 303763081 12272. ATAC-Seq NF-YA KD, Rep 1 Organism: Mus musculus Source name: mouse Embryonic Stem Cells (ESCs) Platform: GPL19057 Series: GSE115110 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5823892 Sample Accession: GSM3763080 ID: 303763080 12273. ATAC-Seq Control KD, Rep 2 Organism: Mus musculus Source name: mouse Embryonic Stem Cells (ESCs) Platform: GPL19057 Series: GSE115110 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5823891 Sample Accession: GSM3763079 ID: 303763079 12274. ATAC-Seq Control KD, Rep 1 Organism: Mus musculus Source name: mouse Embryonic Stem Cells (ESCs) Platform: GPL19057 Series: GSE115110 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5823890 Sample Accession: GSM3763078 ID: 303763078 12275. 61236: ATAC-seq CpG-stimulated FO B cell Organism: Mus musculus Source name: FO B cell Platform: GPL17021 Series: GSE122313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3463nnn/GSM3463880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4995950 Sample Accession: GSM3463880 ID: 303463880 12276. 61235: ATAC-seq CpG-stimulated FO B cell Organism: Mus musculus Source name: FO B cell Platform: GPL17021 Series: GSE122313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3463nnn/GSM3463879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4995949 Sample Accession: GSM3463879 ID: 303463879 12277. 61234: ATAC-seq CpG-stimulated FO B cell Organism: Mus musculus Source name: FO B cell Platform: GPL17021 Series: GSE122313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3463nnn/GSM3463878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4995948 Sample Accession: GSM3463878 ID: 303463878 12278. 61233: ATAC-seq CpG-stimulated FO B cell Organism: Mus musculus Source name: FO B cell Platform: GPL17021 Series: GSE122313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3463nnn/GSM3463877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4995947 Sample Accession: GSM3463877 ID: 303463877 12279. 61232: ATAC-seq naive FO B cell Organism: Mus musculus Source name: naive FO B cell Platform: GPL17021 Series: GSE122313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3463nnn/GSM3463876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4995946 Sample Accession: GSM3463876 ID: 303463876 12280. 61231: ATAC-seq naive FO B cell Organism: Mus musculus Source name: naive FO B cell Platform: GPL17021 Series: GSE122313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3463nnn/GSM3463875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4995945 Sample Accession: GSM3463875 ID: 303463875 12281. 61230: ATAC-seq naive FO B cell Organism: Mus musculus Source name: naive FO B cell Platform: GPL17021 Series: GSE122313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3463nnn/GSM3463874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4995944 Sample Accession: GSM3463874 ID: 303463874 12282. 61229: ATAC-seq naive FO B cell Organism: Mus musculus Source name: naive FO B cell Platform: GPL17021 Series: GSE122313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3463nnn/GSM3463873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4995943 Sample Accession: GSM3463873 ID: 303463873 12283. ATAC-seq-L234-K562-CRISPRk-15777-b Organism: Homo sapiens Source name: ATAC-seq-L234-K562-CRISPRk-15777-b Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848161 Sample Accession: GSM3770796 ID: 303770796 12284. ATAC-seq-L233-K562-CRISPRk-15777-a Organism: Homo sapiens Source name: ATAC-seq-L233-K562-CRISPRk-15777-a Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848160 Sample Accession: GSM3770795 ID: 303770795 12285. ATAC-seq-L232-K562-CRISPRk-15776-b Organism: Homo sapiens Source name: ATAC-seq-L232-K562-CRISPRk-15776-b Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848159 Sample Accession: GSM3770794 ID: 303770794 12286. ATAC-seq-L231-K562-CRISPRk-15776-a Organism: Homo sapiens Source name: ATAC-seq-L231-K562-CRISPRk-15776-a Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848158 Sample Accession: GSM3770793 ID: 303770793 12287. ATAC-seq-L230-K562-CRISPRk-N-b Organism: Homo sapiens Source name: ATAC-seq-L230-K562-CRISPRk-N-b Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848157 Sample Accession: GSM3770792 ID: 303770792 12288. ATAC-seq-L229-K562-CRISPRk-N-a Organism: Homo sapiens Source name: ATAC-seq-L229-K562-CRISPRk-N-a Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848156 Sample Accession: GSM3770791 ID: 303770791 12289. ATAC-seq-L228-K562-CRISPRi-15777-b Organism: Homo sapiens Source name: ATAC-seq-L228-K562-CRISPRi-15777-b Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848155 Sample Accession: GSM3770790 ID: 303770790 12290. ATAC-seq-L227-K562-CRISPRi-15777-a Organism: Homo sapiens Source name: ATAC-seq-L227-K562-CRISPRi-15777-a Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848154 Sample Accession: GSM3770789 ID: 303770789 12291. ATAC-seq-L226-K562-CRISPRi-15776-b Organism: Homo sapiens Source name: ATAC-seq-L226-K562-CRISPRi-15776-b Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848153 Sample Accession: GSM3770788 ID: 303770788 12292. ATAC-seq-L225-K562-CRISPRi-15776-a Organism: Homo sapiens Source name: ATAC-seq-L225-K562-CRISPRi-15776-a Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848152 Sample Accession: GSM3770787 ID: 303770787 12293. ATAC-seq-L224-K562-CRISPRi-N-b Organism: Homo sapiens Source name: ATAC-seq-L224-K562-CRISPRi-N-b Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848151 Sample Accession: GSM3770786 ID: 303770786 12294. ATAC-seq-L223-K562-CRISPRi-N-a Organism: Homo sapiens Source name: ATAC-seq-L223-K562-CRISPRi-N-a Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848150 Sample Accession: GSM3770785 ID: 303770785 12295. ATAC-seq-CRISPRk-N4371-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRk-N4371-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848149 Sample Accession: GSM3770784 ID: 303770784 12296. ATAC-seq-CRISPRk-N4371-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRk-N4371-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848148 Sample Accession: GSM3770783 ID: 303770783 12297. ATAC-seq-CRISPRk-N4293-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRk-N4293-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848147 Sample Accession: GSM3770782 ID: 303770782 12298. ATAC-seq-CRISPRk-N4293-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRk-N4293-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848146 Sample Accession: GSM3770781 ID: 303770781 12299. ATAC-seq-CRISPRk-13006-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRk-13006-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848145 Sample Accession: GSM3770780 ID: 303770780 12300. ATAC-seq-CRISPRk-13006-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRk-13006-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848144 Sample Accession: GSM3770779 ID: 303770779 12301. ATAC-seq-CRISPRk-13004-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRk-13004-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848143 Sample Accession: GSM3770778 ID: 303770778 12302. ATAC-seq-CRISPRk-13004-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRk-13004-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848142 Sample Accession: GSM3770777 ID: 303770777 12303. ATAC-seq-CRISPRa-N4371-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-N4371-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848141 Sample Accession: GSM3770776 ID: 303770776 12304. ATAC-seq-CRISPRa-N4371-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-N4371-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848140 Sample Accession: GSM3770775 ID: 303770775 12305. ATAC-seq-CRISPRa-N4293-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-N4293-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848139 Sample Accession: GSM3770774 ID: 303770774 12306. ATAC-seq-CRISPRa-N4293-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-N4293-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848138 Sample Accession: GSM3770773 ID: 303770773 12307. ATAC-seq-CRISPRa-15173-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-15173-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848137 Sample Accession: GSM3770772 ID: 303770772 12308. ATAC-seq-CRISPRa-15173-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-15173-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848136 Sample Accession: GSM3770771 ID: 303770771 12309. ATAC-seq-CRISPRa-15171-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-15171-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848135 Sample Accession: GSM3770770 ID: 303770770 12310. ATAC-seq-CRISPRa-15171-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-15171-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848134 Sample Accession: GSM3770769 ID: 303770769 12311. ATAC-seq-CRISPRa-13190-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-13190-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848133 Sample Accession: GSM3770768 ID: 303770768 12312. ATAC-seq-CRISPRa-13190-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-13190-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848170 Sample Accession: GSM3770767 ID: 303770767 12313. ATAC-seq-CRISPRa-13189-2 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-13189-2 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848169 Sample Accession: GSM3770766 ID: 303770766 12314. ATAC-seq-CRISPRa-13189-1 Organism: Homo sapiens Source name: ATAC-seq-CRISPRa-13189-1 Platform: GPL18573 Series: GSE131349 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3770nnn/GSM3770765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5848168 Sample Accession: GSM3770765 ID: 303770765 12315. Control ATAC-seq 5 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291872 Sample Accession: GSM3579708 ID: 303579708 12316. MeCP2 OE 11x ATAC-seq 4 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291871 Sample Accession: GSM3579707 ID: 303579707 12317. MeCP2 OE 11x ATAC-seq 3 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291870 Sample Accession: GSM3579706 ID: 303579706 12318. MeCP2 OE 4x ATAC-seq 2 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291869 Sample Accession: GSM3579705 ID: 303579705 12319. MeCP2 OE 4x ATAC-seq 1 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579704/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291868 Sample Accession: GSM3579704 ID: 303579704 12320. MeCP2 KO ATAC-seq 4 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291867 Sample Accession: GSM3579703 ID: 303579703 12321. MeCP2 KO ATAC-seq 3 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291866 Sample Accession: GSM3579702 ID: 303579702 12322. MeCP2 KO ATAC-seq 2 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291865 Sample Accession: GSM3579701 ID: 303579701 12323. MeCP2 KO ATAC-seq 1 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291864 Sample Accession: GSM3579700 ID: 303579700 12324. Control ATAC-seq 4 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579699/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291863 Sample Accession: GSM3579699 ID: 303579699 12325. Control ATAC-seq 3 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291862 Sample Accession: GSM3579698 ID: 303579698 12326. Control ATAC-seq 2 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291861 Sample Accession: GSM3579697 ID: 303579697 12327. Control ATAC-seq 1 Organism: Homo sapiens Source name: LUHMES-derived neurons Platform: GPL16791 Series: GSE125658 GSE125660 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3579nnn/GSM3579696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5291860 Sample Accession: GSM3579696 ID: 303579696 12328. ATAC-SEQ DCA Organism: Mus musculus Source name: mouse primary muscle myoblasts Platform: GPL17021 Series: GSE129259 GSE129280 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3703nnn/GSM3703672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5628806 Sample Accession: GSM3703672 ID: 303703672 12329. ATAC-SEQ PBS Organism: Mus musculus Source name: mouse primary muscle myoblasts Platform: GPL17021 Series: GSE129259 GSE129280 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3703nnn/GSM3703671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5628805 Sample Accession: GSM3703671 ID: 303703671 12330. H1_ATACseq_(20181017_MM_Hs_0705MPM516) Organism: Homo sapiens Source name: ATAC-Seq Platform: GPL16791 Series: GSE128499 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3677nnn/GSM3677823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5539816 Sample Accession: GSM3677823 ID: 303677823 12331. DE_ATACseq_(20181017_MM_Hs_0705MPM476) Organism: Homo sapiens Source name: ATAC-Seq Platform: GPL16791 Series: GSE128499 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3677nnn/GSM3677805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5539798 Sample Accession: GSM3677805 ID: 303677805 12332. 4d_ATACseq_(20181017_MM_Hs_0705MPM488) Organism: Homo sapiens Source name: ATAC-Seq Platform: GPL16791 Series: GSE128499 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3677nnn/GSM3677783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5539776 Sample Accession: GSM3677783 ID: 303677783 12333. 3d_ATACseq_(20181017_MM_Hs_0705MPM500) Organism: Homo sapiens Source name: ATAC-Seq Platform: GPL16791 Series: GSE128499 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3677nnn/GSM3677761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5539754 Sample Accession: GSM3677761 ID: 303677761 12334. 2d_ATACseq_(20181017_MM_Hs_0705MPM512) Organism: Homo sapiens Source name: ATAC-Seq Platform: GPL16791 Series: GSE128499 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3677nnn/GSM3677739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5539732 Sample Accession: GSM3677739 ID: 303677739 12335. RNA_ILC2_IL33_cAMP_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936390 Sample Accession: GSM3834156 ID: 303834156 12336. RNA_ILC2_IL33_cAMP_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936389 Sample Accession: GSM3834155 ID: 303834155 12337. RNA_ILC2_cAMP_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936388 Sample Accession: GSM3834154 ID: 303834154 12338. RNA_ILC2_cAMP_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936387 Sample Accession: GSM3834153 ID: 303834153 12339. RNA_ILC2_IL33_NMU_Gaqi_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936386 Sample Accession: GSM3834152 ID: 303834152 12340. RNA_ILC2_IL33_NMU_Gaqi_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936385 Sample Accession: GSM3834151 ID: 303834151 12341. RNA_ILC2_IL33_CGRP_Gaqi_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936384 Sample Accession: GSM3834150 ID: 303834150 12342. RNA_ILC2_IL33_CGRP_Gaqi_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936383 Sample Accession: GSM3834149 ID: 303834149 12343. RNA_ILC2_IL33_NMU_CGRP_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936382 Sample Accession: GSM3834148 ID: 303834148 12344. RNA_ILC2_IL33_NMU_CGRP_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936381 Sample Accession: GSM3834147 ID: 303834147 12345. RNA_ILC2_IL33_NMU_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936380 Sample Accession: GSM3834146 ID: 303834146 12346. RNA_ILC2_IL33_NMU_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936379 Sample Accession: GSM3834145 ID: 303834145 12347. RNA_ILC2_IL33_CGRP_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936378 Sample Accession: GSM3834144 ID: 303834144 12348. RNA_ILC2_IL33_CGRP_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936377 Sample Accession: GSM3834143 ID: 303834143 12349. RNA_ILC2_IL33_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936376 Sample Accession: GSM3834142 ID: 303834142 12350. RNA_ILC2_IL33_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936375 Sample Accession: GSM3834141 ID: 303834141 12351. RNA_ILC2_NMU_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936374 Sample Accession: GSM3834140 ID: 303834140 12352. RNA_ILC2_NMU_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936373 Sample Accession: GSM3834139 ID: 303834139 12353. RNA_ILC2_CGRP_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936372 Sample Accession: GSM3834138 ID: 303834138 12354. RNA_ILC2_CGRP_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936371 Sample Accession: GSM3834137 ID: 303834137 12355. RNA_ILC2_nostim_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936370 Sample Accession: GSM3834136 ID: 303834136 12356. RNA_ILC2_nostim_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936369 Sample Accession: GSM3834135 ID: 303834135 12357. RNA_ILC2_lung_nippo_day14 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936368 Sample Accession: GSM3834134 ID: 303834134 12358. RNA_ILC2_lung_nippo_day9 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936367 Sample Accession: GSM3834133 ID: 303834133 12359. RNA_ILC2_lung_nippo_day5 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936366 Sample Accession: GSM3834132 ID: 303834132 12360. RNA_ILC2_lung_nippo_day2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936365 Sample Accession: GSM3834131 ID: 303834131 12361. RNA_ILC2_lung_steady Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936364 Sample Accession: GSM3834130 ID: 303834130 12362. RNA_Th2_lung_nippo_day14 Organism: Mus musculus Source name: mouse primary lung Th2 cells Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936363 Sample Accession: GSM3834129 ID: 303834129 12363. RNA_Th2_lung_nippo_day9 Organism: Mus musculus Source name: mouse primary lung Th2 cells Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936362 Sample Accession: GSM3834128 ID: 303834128 12364. RNA_naïve_CD4_T_mLNs Organism: Mus musculus Source name: mouse primary mLNs naïve Th cells Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834127/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936361 Sample Accession: GSM3834127 ID: 303834127 12365. FastATAC_ILC2_IL33_NMU_CGRP_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936350 Sample Accession: GSM3834116 ID: 303834116 12366. FastATAC_ILC2_IL33_NMU_CGRP_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936349 Sample Accession: GSM3834115 ID: 303834115 12367. FastATAC_ILC2_IL33_NMU_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936348 Sample Accession: GSM3834114 ID: 303834114 12368. FastATAC_ILC2_IL33_NMU_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936347 Sample Accession: GSM3834113 ID: 303834113 12369. FastATAC_ILC2_IL33_CGRP_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936346 Sample Accession: GSM3834112 ID: 303834112 12370. FastATAC_ILC2_IL33_CGRP_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936345 Sample Accession: GSM3834111 ID: 303834111 12371. FastATAC_ILC2_IL33_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936344 Sample Accession: GSM3834110 ID: 303834110 12372. FastATAC_ILC2_IL33_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936343 Sample Accession: GSM3834109 ID: 303834109 12373. FastATAC_ILC2_NMU_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936342 Sample Accession: GSM3834108 ID: 303834108 12374. FastATAC_ILC2_NMU_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936341 Sample Accession: GSM3834107 ID: 303834107 12375. FastATAC_ILC2_CGRP_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834106/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936340 Sample Accession: GSM3834106 ID: 303834106 12376. FastATAC_ILC2_CGRP_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936339 Sample Accession: GSM3834105 ID: 303834105 12377. FastATAC_ILC2_nostim_4h_rep2 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936338 Sample Accession: GSM3834104 ID: 303834104 12378. FastATAC_ILC2_nostim_4h_rep1 Organism: Mus musculus Source name: mouse primary lung ILC2s Platform: GPL21493 Series: GSE131996 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3834nnn/GSM3834103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5936337 Sample Accession: GSM3834103 ID: 303834103 12379. pre-cDC1 ATAC-seq biological replicate 3 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854832/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975383 Sample Accession: GSM3854832 ID: 303854832 12380. pre-cDC1 ATAC-seq biological replicate 2 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854831/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975382 Sample Accession: GSM3854831 ID: 303854831 12381. pre-cDC1 ATAC-seq biological replicate 1 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975381 Sample Accession: GSM3854830 ID: 303854830 12382. CDP ATAC-seq biological replicate 3 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975380 Sample Accession: GSM3854829 ID: 303854829 12383. CDP ATAC-seq biological replicate 2 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975379 Sample Accession: GSM3854828 ID: 303854828 12384. CDP ATAC-seq biological replicate 1 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975378 Sample Accession: GSM3854827 ID: 303854827 12385. MDP ATAC-seq biological replicate 3 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854826/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975377 Sample Accession: GSM3854826 ID: 303854826 12386. MDP ATAC-seq biological replicate 2 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975376 Sample Accession: GSM3854825 ID: 303854825 12387. MDP ATAC-seq biological replicate 1 Organism: Mus musculus Source name: Bone marrow Platform: GPL19057 Series: GSE132240 GSE132241 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3854nnn/GSM3854824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5975375 Sample Accession: GSM3854824 ID: 303854824 12388. ATAC-Seq_mbd9-3_R2 Organism: Arabidopsis thaliana Source name: flowers Platform: GPL13222 Series: GSE123257 GSE123263 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3498nnn/GSM3498711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5088433 Sample Accession: GSM3498711 ID: 303498711 12389. ATAC-Seq_mbd9-3_R1 Organism: Arabidopsis thaliana Source name: flowers Platform: GPL13222 Series: GSE123257 GSE123263 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3498nnn/GSM3498710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5088432 Sample Accession: GSM3498710 ID: 303498710 12390. ATAC-Seq_WT_R2 Organism: Arabidopsis thaliana Source name: flowers Platform: GPL13222 Series: GSE123257 GSE123263 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3498nnn/GSM3498709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5088431 Sample Accession: GSM3498709 ID: 303498709 12391. ATAC-Seq_WT_R1 Organism: Arabidopsis thaliana Source name: flowers Platform: GPL13222 Series: GSE123257 GSE123263 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3498nnn/GSM3498708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5088430 Sample Accession: GSM3498708 ID: 303498708 12392. ATAC-seq_LSK_G12D_Ezh2-KO_rep3 Organism: Mus musculus Source name: ATAC-seq_LSK_G12D_Ezh2-KO Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952660 Sample Accession: GSM3842160 ID: 303842160 12393. ATAC-seq_LSK_G12D_Ezh2-KO_rep2 Organism: Mus musculus Source name: ATAC-seq_LSK_G12D_Ezh2-KO Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952659 Sample Accession: GSM3842159 ID: 303842159 12394. ATAC-seq_LSK_G12D_Ezh2-KO_rep1 Organism: Mus musculus Source name: ATAC-seq_LSK_G12D_Ezh2-KO Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952658 Sample Accession: GSM3842158 ID: 303842158 12395. ATAC-seq_LSK_Ezh2-KO_rep3 Organism: Mus musculus Source name: ATAC-seq_LSK_Ezh2-KO Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952657 Sample Accession: GSM3842157 ID: 303842157 12396. ATAC-seq_LSK_Ezh2-KO_rep2 Organism: Mus musculus Source name: ATAC-seq_LSK_Ezh2-KO Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952656 Sample Accession: GSM3842156 ID: 303842156 12397. ATAC-seq_LSK_Ezh2-KO_rep1 Organism: Mus musculus Source name: ATAC-seq_LSK_Ezh2-KO Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952655 Sample Accession: GSM3842155 ID: 303842155 12398. ATAC-seq_LSK_G12D_rep4 Organism: Mus musculus Source name: ATAC-seq_LSK_G12D Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952654 Sample Accession: GSM3842154 ID: 303842154 12399. ATAC-seq_LSK_G12D_rep3 Organism: Mus musculus Source name: ATAC-seq_LSK_G12D Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952653 Sample Accession: GSM3842153 ID: 303842153 12400. ATAC-seq_LSK_G12D_rep2 Organism: Mus musculus Source name: ATAC-seq_LSK_G12D Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952652 Sample Accession: GSM3842152 ID: 303842152 12401. ATAC-seq_LSK_G12D_rep1 Organism: Mus musculus Source name: ATAC-seq_LSK_G12D Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952651 Sample Accession: GSM3842151 ID: 303842151 12402. ATAC-seq_LSK_WT_rep4 Organism: Mus musculus Source name: ATAC-seq_LSK_WT Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952650 Sample Accession: GSM3842150 ID: 303842150 12403. ATAC-seq_LSK_WT_rep3 Organism: Mus musculus Source name: ATAC-seq_LSK_WT Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952649 Sample Accession: GSM3842149 ID: 303842149 12404. ATAC-seq_LSK_WT_rep2 Organism: Mus musculus Source name: ATAC-seq_LSK_WT Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952648 Sample Accession: GSM3842148 ID: 303842148 12405. ATAC-seq_LSK_WT_rep1 Organism: Mus musculus Source name: ATAC-seq_LSK_WT Platform: GPL19057 Series: GSE112995 GSE132077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3842nnn/GSM3842147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5952647 Sample Accession: GSM3842147 ID: 303842147 12406. Human in vitro differentiated primary adipocyte ATAC-seq Organism: Homo sapiens Source name: Human white adipocytes (Ad) Platform: GPL20301 Series: GSE129574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5661493 Sample Accession: GSM3716514 ID: 303716514 12407. Human primary preadipocyte ATAC-seq Organism: Homo sapiens Source name: Human white preadipocytes (PAd) Platform: GPL20301 Series: GSE129574 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5661492 Sample Accession: GSM3716513 ID: 303716513 12408. ATAC-seq_human primary fetal astrocytes batch 2_rep2 Organism: Homo sapiens Source name: ATAC-seq_human primary fetal astrocytes batch 2 Platform: GPL20301 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5359796 Sample Accession: GSM3597647 ID: 303597647 12409. ATAC-seq_human primary fetal astrocytes batch 2_rep1 Organism: Homo sapiens Source name: ATAC-seq_human primary fetal astrocytes batch 2 Platform: GPL20301 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5359795 Sample Accession: GSM3597646 ID: 303597646 12410. ATAC-seq_iPSC-derived hippocampal DG-like neurons_rep1 Organism: Homo sapiens Source name: ATAC-seq_iPSC-derived hippocampal DG-like neurons Platform: GPL20301 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5359790 Sample Accession: GSM3597641 ID: 303597641 12411. ATAC-seq_human primary fetal astrocytes_rep2 Organism: Homo sapiens Source name: human primary fetal astrocytes Platform: GPL20301 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3981946 Sample Accession: GSM3106831 ID: 303106831 12412. ATAC-seq_human primary fetal astrocytes_rep1 Organism: Homo sapiens Source name: human primary fetal astrocytes Platform: GPL20301 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3981945 Sample Accession: GSM3106830 ID: 303106830 12413. ATAC-seq_iPSC-induced excitatory neurons_rep2 Organism: Homo sapiens Source name: iPSC-induced excitatory neurons Platform: GPL20301 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3981942 Sample Accession: GSM3106827 ID: 303106827 12414. ATAC-seq_iPSC-induced excitatory neurons_rep1 Organism: Homo sapiens Source name: iPSC-induced excitatory neurons Platform: GPL20301 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3981941 Sample Accession: GSM3106826 ID: 303106826 12415. ATAC-seq_iPSC-induced lower motor neurons_rep3 Organism: Homo sapiens Source name: ATAC-seq_iPSC-induced lower motor neurons Platform: GPL24676 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5359794 Sample Accession: GSM3597645 ID: 303597645 12416. ATAC-seq_iPSC-induced lower motor neurons_rep2 Organism: Homo sapiens Source name: ATAC-seq_iPSC-induced lower motor neurons Platform: GPL24676 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5359793 Sample Accession: GSM3597644 ID: 303597644 12417. ATAC-seq_iPSC-induced lower motor neurons_rep1 Organism: Homo sapiens Source name: ATAC-seq_iPSC-induced lower motor neurons Platform: GPL24676 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5359792 Sample Accession: GSM3597643 ID: 303597643 12418. ATAC-seq_iPSC-derived hippocampal DG-like neurons_rep2 Organism: Homo sapiens Source name: ATAC-seq_iPSC-derived hippocampal DG-like neurons Platform: GPL24676 Series: GSE113480 GSE113483 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5359791 Sample Accession: GSM3597642 ID: 303597642 12419. ATAC-seq_LPS_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE120942 GSE120945 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3421nnn/GSM3421842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4813035 Sample Accession: GSM3421842 ID: 303421842 12420. ATAC-seq_LPS_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE120942 GSE120945 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3421nnn/GSM3421841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4813034 Sample Accession: GSM3421841 ID: 303421841 12421. ATAC-seq_IFNg_LPS_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE120942 GSE120945 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3421nnn/GSM3421840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4813033 Sample Accession: GSM3421840 ID: 303421840 12422. ATAC-seq_IFNg_LPS_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE120942 GSE120945 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3421nnn/GSM3421839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4813032 Sample Accession: GSM3421839 ID: 303421839 12423. D538GClone3_E2 (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031095 Sample Accession: GSM3863172 ID: 303863172 12424. D538GClone3_DMSO (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031094 Sample Accession: GSM3863171 ID: 303863171 12425. D538GClone2_E2 (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031093 Sample Accession: GSM3863170 ID: 303863170 12426. D538GClone2_DMSO (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031091 Sample Accession: GSM3863169 ID: 303863169 12427. D538GClone1_E2 (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031090 Sample Accession: GSM3863168 ID: 303863168 12428. D538GClone1_DMSO (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031089 Sample Accession: GSM3863167 ID: 303863167 12429. WTClone2_E2_25D (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031088 Sample Accession: GSM3863166 ID: 303863166 12430. WTClone2_E2_20D (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031087 Sample Accession: GSM3863165 ID: 303863165 12431. WTClone2_E2_15D (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031086 Sample Accession: GSM3863164 ID: 303863164 12432. WTClone2_E2_10D (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031085 Sample Accession: GSM3863163 ID: 303863163 12433. WTClone1_E2_25D (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031084 Sample Accession: GSM3863162 ID: 303863162 12434. WTClone1_E2_20D (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031083 Sample Accession: GSM3863161 ID: 303863161 12435. WTClone1_E2_15D (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031082 Sample Accession: GSM3863160 ID: 303863160 12436. WTClone1_E2_10D (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031081 Sample Accession: GSM3863159 ID: 303863159 12437. WTClone2_E2_8hrs (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031080 Sample Accession: GSM3863158 ID: 303863158 12438. WTClone2_E2_1hr (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031079 Sample Accession: GSM3863157 ID: 303863157 12439. WTClone2_DMSO_1hr (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031078 Sample Accession: GSM3863156 ID: 303863156 12440. WTClone1_E2_8hrs (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031077 Sample Accession: GSM3863155 ID: 303863155 12441. WTClone1_E2_1hr (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031076 Sample Accession: GSM3863154 ID: 303863154 12442. WTClone1_DMSO_1hr (ATAC-seq) Organism: Homo sapiens Source name: Endometrioid adenocarcinoma Platform: GPL16791 Series: GSE132424 GSE132430 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3863nnn/GSM3863153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX6031075 Sample Accession: GSM3863153 ID: 303863153 12443. Mouse 10T1/2, Mutant 3 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_Mut_3 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547690 Sample Accession: GSM3330239 ID: 303330239 12444. Mouse 10T1/2, Mutant 2 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_Mut_2 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547689 Sample Accession: GSM3330238 ID: 303330238 12445. Mouse 10T1/2, Mutant 1 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_Mut_1 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547688 Sample Accession: GSM3330237 ID: 303330237 12446. Mouse 10T1/2, Mutant + Tamoxifen 3 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_Mut_Tam_3 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547687 Sample Accession: GSM3330236 ID: 303330236 12447. Mouse 10T1/2, Mutant + Tamoxifen 2 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_Mut_Tam_2 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547686 Sample Accession: GSM3330235 ID: 303330235 12448. Mouse 10T1/2, Wildtype 3 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_WT_3 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547685 Sample Accession: GSM3330234 ID: 303330234 12449. Mouse 10T1/2, Wildtype 2 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_WT_2 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330233/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547684 Sample Accession: GSM3330233 ID: 303330233 12450. Mouse 10T1/2, Wildtype 1 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_WT_1 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547683 Sample Accession: GSM3330232 ID: 303330232 12451. Mouse 10T1/2, Wildtype + Tamoxifen 3 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_WT_Tam_3 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547682 Sample Accession: GSM3330231 ID: 303330231 12452. Mouse 10T1/2, Wildtype + Tamoxifen 2 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_WT_Tam_2 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547681 Sample Accession: GSM3330230 ID: 303330230 12453. Mouse 10T1/2, Wildtype + Tamoxifen 1 [ATAC-seq] Organism: Mus musculus Source name: 10T1/2_WT_Tam_1 Platform: GPL19057 Series: GSE118440 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3330nnn/GSM3330229/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4547680 Sample Accession: GSM3330229 ID: 303330229 12454. ATACseq in zebrafish wild type embryos at 8som, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE123056 GSE123059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5074450 Sample Accession: GSM3494511 ID: 303494511 12455. ATACseq in zebrafish wild type embryos at 8som, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE123056 GSE123059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5074449 Sample Accession: GSM3494510 ID: 303494510 12456. ATACseq in zebrafish tp63 mutant embryos at 8som, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE123056 GSE123059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5074446 Sample Accession: GSM3494507 ID: 303494507 12457. ATACseq in zebrafish tp63 mutant embryos at 8som, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE123056 GSE123059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5074445 Sample Accession: GSM3494506 ID: 303494506 12458. ATAC-seq_Wt DP-R1hi rep3 Organism: Danio rerio Source name: haemogenic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978294 Sample Accession: GSM3855035 ID: 303855035 12459. ATAC-seq_Wt DP-R1hi rep2 Organism: Danio rerio Source name: haemogenic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978293 Sample Accession: GSM3855034 ID: 303855034 12460. ATAC-seq_Wt DP-R1hi rep1 Organism: Danio rerio Source name: haemogenic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978292 Sample Accession: GSM3855033 ID: 303855033 12461. ATAC-seq_Wt DP-R1med rep3 Organism: Danio rerio Source name: aortic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978291 Sample Accession: GSM3855032 ID: 303855032 12462. ATAC-seq_Wt DP-R1med rep2 Organism: Danio rerio Source name: aortic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978290 Sample Accession: GSM3855031 ID: 303855031 12463. ATAC-seq_Wt DP-R1med rep1 Organism: Danio rerio Source name: aortic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978289 Sample Accession: GSM3855030 ID: 303855030 12464. ATAC-seq_Wt DP-R1lo rep3 Organism: Danio rerio Source name: aortic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978288 Sample Accession: GSM3855029 ID: 303855029 12465. ATAC-seq_Wt DP-R1lo rep2 Organism: Danio rerio Source name: aortic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978287 Sample Accession: GSM3855028 ID: 303855028 12466. ATAC-seq_Wt DP-R1lo rep1 Organism: Danio rerio Source name: aortic endothelium Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978286 Sample Accession: GSM3855027 ID: 303855027 12467. ATAC-seq_Wt SP-kdrl rep3 Organism: Danio rerio Source name: non-aortic endothelioum (NAE) Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978285 Sample Accession: GSM3855026 ID: 303855026 12468. ATAC-seq_Wt SP-kdrl rep2 Organism: Danio rerio Source name: non-aortic endothelioum (NAE) Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978284 Sample Accession: GSM3855025 ID: 303855025 12469. ATAC-seq_Wt SP-kdrl rep1 Organism: Danio rerio Source name: non-aortic endothelioum (NAE) Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978283 Sample Accession: GSM3855024 ID: 303855024 12470. ATAC-seq_Wt DN rep3 Organism: Danio rerio Source name: non-endothelial tissue Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978282 Sample Accession: GSM3855023 ID: 303855023 12471. ATAC-seq_Wt DN rep2 Organism: Danio rerio Source name: non-endothelial tissue Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978281 Sample Accession: GSM3855022 ID: 303855022 12472. ATAC-seq_Wt DN rep1 Organism: Danio rerio Source name: non-endothelial tissue Platform: GPL20828 Series: GSE132258 GSE132260 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3855nnn/GSM3855021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5978280 Sample Accession: GSM3855021 ID: 303855021 12473. ATACseq in zebrafish wild type embryos at 36hpf, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL20828 Series: GSE123056 GSE123059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5074448 Sample Accession: GSM3494509 ID: 303494509 12474. ATACseq in zebrafish wild type embryos at 36hpf, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL20828 Series: GSE123056 GSE123059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5074447 Sample Accession: GSM3494508 ID: 303494508 12475. ATACseq in zebrafish tp63 mutant embryos at 36hpf, replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL20828 Series: GSE123056 GSE123059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5074444 Sample Accession: GSM3494505 ID: 303494505 12476. ATACseq in zebrafish tp63 mutant embryos at 36hpf, replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL20828 Series: GSE123056 GSE123059 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5074443 Sample Accession: GSM3494504 ID: 303494504 12477. ATAC-seq EB KO re2 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL21273 Series: GSE115169 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3168nnn/GSM3168488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4147805 Sample Accession: GSM3168488 ID: 303168488 12478. ATAC-seq EB WT re2 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL21273 Series: GSE115169 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3168nnn/GSM3168487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4147804 Sample Accession: GSM3168487 ID: 303168487 12479. ATAC-seq ES KO re2 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL21273 Series: GSE115169 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3168nnn/GSM3168486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4147803 Sample Accession: GSM3168486 ID: 303168486 12480. ATAC-seq ES WT re2 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL21273 Series: GSE115169 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3168nnn/GSM3168485/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4147802 Sample Accession: GSM3168485 ID: 303168485 12481. ATAC-seq EB KO re1 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL21273 Series: GSE115169 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3168nnn/GSM3168484/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4147801 Sample Accession: GSM3168484 ID: 303168484 12482. ATAC-seq EB WT re1 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL21273 Series: GSE115169 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3168nnn/GSM3168483/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4147800 Sample Accession: GSM3168483 ID: 303168483 12483. ATAC-seq ES KO re1 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL21273 Series: GSE115169 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3168nnn/GSM3168482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4147799 Sample Accession: GSM3168482 ID: 303168482 12484. ATAC-seq ES WT re1 Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL21273 Series: GSE115169 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3168nnn/GSM3168481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4147798 Sample Accession: GSM3168481 ID: 303168481 12485. ATAC seq in DOT1Li treated RS4;11 cells Organism: Homo sapiens Source name: MLL-AF4 leukemia cell line (RS4;11) Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3681nnn/GSM3681446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5548890 Sample Accession: GSM3681446 ID: 303681446 12486. ATAC seq in RS4;11 cells Organism: Homo sapiens Source name: MLL-AF4 leukemia cell line (RS4;11) Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3681nnn/GSM3681445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5548889 Sample Accession: GSM3681445 ID: 303681445 12487. ATAC seq in DOT1Li treated SEM cells rep5 Organism: Homo sapiens Source name: ATAC seq in DOT1Li treated SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484819 Sample Accession: GSM3312795 ID: 303312795 12488. ATAC seq in DOT1Li treated SEM cells rep4 Organism: Homo sapiens Source name: ATAC seq in DOT1Li treated SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484818 Sample Accession: GSM3312794 ID: 303312794 12489. ATAC seq in DOT1Li treated SEM cells rep3 Organism: Homo sapiens Source name: ATAC seq in DOT1Li treated SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484817 Sample Accession: GSM3312793 ID: 303312793 12490. ATAC seq in DOT1Li treated SEM cells rep2 Organism: Homo sapiens Source name: ATAC seq in DOT1Li treated SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484816 Sample Accession: GSM3312792 ID: 303312792 12491. ATAC seq in DOT1Li treated SEM cells rep1 Organism: Homo sapiens Source name: ATAC seq in DOT1Li treated SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484815 Sample Accession: GSM3312791 ID: 303312791 12492. ATAC seq in SEM cells rep5 Organism: Homo sapiens Source name: ATAC seq in SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484814 Sample Accession: GSM3312790 ID: 303312790 12493. ATAC seq in SEM cells rep4 Organism: Homo sapiens Source name: ATAC seq in SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484813 Sample Accession: GSM3312789 ID: 303312789 12494. ATAC seq in SEM cells rep3 Organism: Homo sapiens Source name: ATAC seq in SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484812 Sample Accession: GSM3312788 ID: 303312788 12495. ATAC seq in SEM cells rep2 Organism: Homo sapiens Source name: ATAC seq in SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484811 Sample Accession: GSM3312787 ID: 303312787 12496. ATAC seq in SEM cells rep1 Organism: Homo sapiens Source name: ATAC seq in SEM cells Platform: GPL18573 Series: GSE117862 GSE117865 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4484810 Sample Accession: GSM3312786 ID: 303312786 12497. ATAC-Seq_rep2 Organism: Mus musculus Source name: C57BL/6J (The Jackson Laboratory) Platform: GPL19057 Series: GSE122204 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3460nnn/GSM3460556/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4984447 Sample Accession: GSM3460556 ID: 303460556 12498. ATAC-Seq_rep1 Organism: Mus musculus Source name: C57BL/6J (The Jackson Laboratory) Platform: GPL19057 Series: GSE122204 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3460nnn/GSM3460555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4984446 Sample Accession: GSM3460555 ID: 303460555 12499. P2 GFP+ rep2 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590384 Sample Accession: GSM3349763 ID: 303349763 12500. P2 GFP+ rep1 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590383 Sample Accession: GSM3349762 ID: 303349762 12501. P0 GFP+ rep2 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590382 Sample Accession: GSM3349761 ID: 303349761 12502. P0 GFP+ rep1 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590381 Sample Accession: GSM3349760 ID: 303349760 12503. E18 GFP+ rep2 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590380 Sample Accession: GSM3349759 ID: 303349759 12504. E18 GFP+ rep1 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590379 Sample Accession: GSM3349758 ID: 303349758 12505. E16.5 GFP+ rep2 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590378 Sample Accession: GSM3349757 ID: 303349757 12506. E16.5 GFP+ rep1 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590377 Sample Accession: GSM3349756 ID: 303349756 12507. E14 GFP+ rep2 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590376 Sample Accession: GSM3349755 ID: 303349755 12508. E14 GFP+ rep1 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590375 Sample Accession: GSM3349754 ID: 303349754 12509. E12.5 GFP+ rep2 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590374 Sample Accession: GSM3349753 ID: 303349753 12510. E12.5 GFP+ rep1 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590373 Sample Accession: GSM3349752 ID: 303349752 12511. E10 GFP+ rep1 ATAC-Seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE118880 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4590372 Sample Accession: GSM3349751 ID: 303349751 12512. BCSCsGFP [ATAC-seq] Organism: Homo sapiens Source name: MCF7 cell line Platform: GPL24676 Series: GSE131586 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5879804 Sample Accession: GSM3790224 ID: 303790224 12513. BCSCsSETD4 [ATAC-seq] Organism: Homo sapiens Source name: MCF7 cell line Platform: GPL24676 Series: GSE131586 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5879803 Sample Accession: GSM3790223 ID: 303790223 12514. rnaseq_ssc3_JQ1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735751 Sample Accession: GSM3735944 ID: 303735944 12515. rnaseq_ssc2_JQ1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735750 Sample Accession: GSM3735943 ID: 303735943 12516. rnaseq_ssc1_JQ1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735749 Sample Accession: GSM3735942 ID: 303735942 12517. rnaseq_control3_JQ1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735748 Sample Accession: GSM3735941 ID: 303735941 12518. rnaseq_control2_JQ1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735747 Sample Accession: GSM3735940 ID: 303735940 12519. rnaseq_control1_JQ1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735746 Sample Accession: GSM3735939 ID: 303735939 12520. rnaseq_ssc3_DMSO Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735745 Sample Accession: GSM3735938 ID: 303735938 12521. rnaseq_ssc2_DMSO Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735744 Sample Accession: GSM3735937 ID: 303735937 12522. rnaseq_ssc1_DMSO Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735743 Sample Accession: GSM3735936 ID: 303735936 12523. rnaseq_control3_DMSO Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735742 Sample Accession: GSM3735935 ID: 303735935 12524. rnaseq_control2_DMSO Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735741 Sample Accession: GSM3735934 ID: 303735934 12525. rnaseq_control1_DMSO Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735740 Sample Accession: GSM3735933 ID: 303735933 12526. rnaseq_ssc3 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735739 Sample Accession: GSM3735932 ID: 303735932 12527. rnaseq_ssc2 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735738 Sample Accession: GSM3735931 ID: 303735931 12528. rnaseq_ssc1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735737 Sample Accession: GSM3735930 ID: 303735930 12529. rnaseq_control3 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735736 Sample Accession: GSM3735929 ID: 303735929 12530. rnaseq_control2 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735735 Sample Accession: GSM3735928 ID: 303735928 12531. rnaseq_control1 Organism: Homo sapiens Source name: dermal fibroblasts Platform: GPL11154 Series: GSE130313 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735734 Sample Accession: GSM3735927 ID: 303735927 12532. nucleosome_free_ssc3 Organism: Homo sapiens Source name: dermal fibroblasts - nucleosome free Platform: GPL11154 Series: GSE130313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3735nnn/GSM3735926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735733 Sample Accession: GSM3735926 ID: 303735926 12533. nucleosome_free_ssc2 Organism: Homo sapiens Source name: dermal fibroblasts - nucleosome free Platform: GPL11154 Series: GSE130313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3735nnn/GSM3735925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735732 Sample Accession: GSM3735925 ID: 303735925 12534. nucleosome_free_ssc1 Organism: Homo sapiens Source name: dermal fibroblasts - nucleosome free Platform: GPL11154 Series: GSE130313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3735nnn/GSM3735924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735731 Sample Accession: GSM3735924 ID: 303735924 12535. nucleosome_free_control3 Organism: Homo sapiens Source name: dermal fibroblasts - nucleosome free Platform: GPL11154 Series: GSE130313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3735nnn/GSM3735923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735730 Sample Accession: GSM3735923 ID: 303735923 12536. nucleosome_free_control2 Organism: Homo sapiens Source name: dermal fibroblasts - nucleosome free Platform: GPL11154 Series: GSE130313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3735nnn/GSM3735922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735729 Sample Accession: GSM3735922 ID: 303735922 12537. nucleosome_free_control1 Organism: Homo sapiens Source name: dermal fibroblasts - nucleosome free Platform: GPL11154 Series: GSE130313 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3735nnn/GSM3735921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5735728 Sample Accession: GSM3735921 ID: 303735921 12538. Ts_Replicate2_Bulk Organism: Mus musculus Source name: Mouse Cortex Platform: GPL19057 Series: GSE127257 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444958 Sample Accession: GSM3633305 ID: 303633305 12539. Ts_Replicate1_Bulk Organism: Mus musculus Source name: Mouse Cortex Platform: GPL19057 Series: GSE127257 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444957 Sample Accession: GSM3633304 ID: 303633304 12540. 2n_Replicate2_Bulk Organism: Mus musculus Source name: Mouse Cortex Platform: GPL19057 Series: GSE127257 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444956 Sample Accession: GSM3633303 ID: 303633303 12541. 2n_Replicate1_Bulk Organism: Mus musculus Source name: Mouse Cortex Platform: GPL19057 Series: GSE127257 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5444955 Sample Accession: GSM3633302 ID: 303633302 12542. Npas4l-KO [ATAC-Seq] Organism: Danio rerio Source name: Embryo Platform: GPL20828 Series: GSE130196 GSE130202 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725644 Sample Accession: GSM3733681 ID: 303733681 12543. WT [ATAC-Seq] Organism: Danio rerio Source name: Embryo Platform: GPL20828 Series: GSE130196 GSE130202 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5725643 Sample Accession: GSM3733680 ID: 303733680 12544. Keratinocyte_rep2 [ATAC-seq] Organism: Homo sapiens Source name: Primary keratinocyte Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963088 Sample Accession: GSM3453249 ID: 303453249 12545. Keratinocyte_rep1 [ATAC-seq] Organism: Homo sapiens Source name: Primary keratinocyte Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963087 Sample Accession: GSM3453248 ID: 303453248 12546. TK_OVOL2_rep2 [ATAC-seq] Organism: Homo sapiens Source name: Dermal fibroblast Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963086 Sample Accession: GSM3453247 ID: 303453247 12547. TK_OVOL2_rep1 [ATAC-seq] Organism: Homo sapiens Source name: Dermal fibroblast Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963085 Sample Accession: GSM3453246 ID: 303453246 12548. TK_MCS_rep2 [ATAC-seq] Organism: Homo sapiens Source name: Dermal fibroblast Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963084 Sample Accession: GSM3453245 ID: 303453245 12549. TK_MCS_rep1 [ATAC-seq] Organism: Homo sapiens Source name: Dermal fibroblast Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963083 Sample Accession: GSM3453244 ID: 303453244 12550. MCS_OVOL2_rep2 [ATAC-seq] Organism: Homo sapiens Source name: Dermal fibroblast Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963082 Sample Accession: GSM3453243 ID: 303453243 12551. MCS_OVOL2_rep1 [ATAC-seq] Organism: Homo sapiens Source name: Dermal fibroblast Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963081 Sample Accession: GSM3453242 ID: 303453242 12552. MCS_MCS_rep2 [ATAC-seq] Organism: Homo sapiens Source name: Dermal fibroblast Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963080 Sample Accession: GSM3453241 ID: 303453241 12553. MCS_MCS_rep1 [ATAC-seq] Organism: Homo sapiens Source name: Dermal fibroblast Platform: GPL16791 Series: GSE122035 GSE122036 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4963079 Sample Accession: GSM3453240 ID: 303453240 12554. SLE.969.T3 [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518701 Sample Accession: GSM3323629 ID: 303323629 12555. SLE.969.SM [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518700 Sample Accession: GSM3323628 ID: 303323628 12556. SLE.969.Pc [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518699 Sample Accession: GSM3323627 ID: 303323627 12557. SLE.969.DN [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518698 Sample Accession: GSM3323626 ID: 303323626 12558. SLE.969.aN [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518697 Sample Accession: GSM3323625 ID: 303323625 12559. SLE.280.SM [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518696 Sample Accession: GSM3323624 ID: 303323624 12560. SLE.280.DN [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518695 Sample Accession: GSM3323623 ID: 303323623 12561. SLE.233.T3 [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518694 Sample Accession: GSM3323622 ID: 303323622 12562. SLE.233.SM [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518693 Sample Accession: GSM3323621 ID: 303323621 12563. SLE.233.DN [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518692 Sample Accession: GSM3323620 ID: 303323620 12564. SLE.233.aN [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518691 Sample Accession: GSM3323619 ID: 303323619 12565. SLE.223.T3 [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518690 Sample Accession: GSM3323618 ID: 303323618 12566. SLE.223.SM [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518689 Sample Accession: GSM3323617 ID: 303323617 12567. SLE.223.DN [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518688 Sample Accession: GSM3323616 ID: 303323616 12568. SLE.223.aN [ATAC-seq] Organism: Homo sapiens Source name: SLE_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518687 Sample Accession: GSM3323615 ID: 303323615 12569. HC.917.T3 [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518686 Sample Accession: GSM3323614 ID: 303323614 12570. HC.917.SM [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518685 Sample Accession: GSM3323613 ID: 303323613 12571. HC.917.Pc [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518684 Sample Accession: GSM3323612 ID: 303323612 12572. HC.917.DN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518683 Sample Accession: GSM3323611 ID: 303323611 12573. HC.917.aN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518682 Sample Accession: GSM3323610 ID: 303323610 12574. HC.774.T3 [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518681 Sample Accession: GSM3323609 ID: 303323609 12575. HC.774.SM [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518680 Sample Accession: GSM3323608 ID: 303323608 12576. HC.774.Pc [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518679 Sample Accession: GSM3323607 ID: 303323607 12577. HC.774.DN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518678 Sample Accession: GSM3323606 ID: 303323606 12578. HC.660.T3 [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518677 Sample Accession: GSM3323605 ID: 303323605 12579. HC.660.SM [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518676 Sample Accession: GSM3323604 ID: 303323604 12580. HC.660.Pc [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518675 Sample Accession: GSM3323603 ID: 303323603 12581. HC.660.aN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518674 Sample Accession: GSM3323602 ID: 303323602 12582. HC.643.T3 [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518673 Sample Accession: GSM3323601 ID: 303323601 12583. HC.643.SM [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518672 Sample Accession: GSM3323600 ID: 303323600 12584. HC.643.Pc [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518671 Sample Accession: GSM3323599 ID: 303323599 12585. HC.643.DN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518670 Sample Accession: GSM3323598 ID: 303323598 12586. HC.1646.T3 [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518669 Sample Accession: GSM3323597 ID: 303323597 12587. HC.1646.rN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518668 Sample Accession: GSM3323596 ID: 303323596 12588. HC.1646.PbPc [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518667 Sample Accession: GSM3323595 ID: 303323595 12589. HC.1252.T3 [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518666 Sample Accession: GSM3323594 ID: 303323594 12590. HC.1252.SM [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518665 Sample Accession: GSM3323593 ID: 303323593 12591. HC.1252.rN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518664 Sample Accession: GSM3323592 ID: 303323592 12592. HC.1252.PbPc [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518663 Sample Accession: GSM3323591 ID: 303323591 12593. HC.1252.DN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518662 Sample Accession: GSM3323590 ID: 303323590 12594. HC.1252.aN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518661 Sample Accession: GSM3323589 ID: 303323589 12595. HC.1141.rN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518660 Sample Accession: GSM3323588 ID: 303323588 12596. HC.1141.PbPc [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518659 Sample Accession: GSM3323587 ID: 303323587 12597. HC.1141.DN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518658 Sample Accession: GSM3323586 ID: 303323586 12598. HC.1085.T3 [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518657 Sample Accession: GSM3323585 ID: 303323585 12599. HC.1085.SM [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518656 Sample Accession: GSM3323584 ID: 303323584 12600. HC.1085.rN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518655 Sample Accession: GSM3323583 ID: 303323583 12601. HC.1085.PbPc [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518654 Sample Accession: GSM3323582 ID: 303323582 12602. HC.1085.DN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518653 Sample Accession: GSM3323581 ID: 303323581 12603. HC.1085.aN [ATAC-seq] Organism: Homo sapiens Source name: healthy control_Circulating B cells Platform: GPL16791 Series: GSE118253 GSE118256 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3323nnn/GSM3323580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4518652 Sample Accession: GSM3323580 ID: 303323580 12604. ATAC-seq_PP1-FOXA2 KO2 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132748/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047340 Sample Accession: GSM3132748 ID: 303132748 12605. ATAC-seq_PP1-FOXA2 KO1 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047339 Sample Accession: GSM3132747 ID: 303132747 12606. ATAC-seq_PP1-WT2 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047338 Sample Accession: GSM3132746 ID: 303132746 12607. ATAC-seq_PP1-WT1 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047337 Sample Accession: GSM3132745 ID: 303132745 12608. ATAC-seq_FG-FOXA2 KO2 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047336 Sample Accession: GSM3132744 ID: 303132744 12609. ATAC-seq_FG-FOXA2 KO1 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047335 Sample Accession: GSM3132743 ID: 303132743 12610. ATAC-seq_FG-WT2 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047334 Sample Accession: GSM3132742 ID: 303132742 12611. ATAC-seq_FG-WT1 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047333 Sample Accession: GSM3132741 ID: 303132741 12612. ATAC-seq_DE-FOXA2 KO2 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047332 Sample Accession: GSM3132740 ID: 303132740 12613. ATAC-seq_DE-FOXA2 KO1 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047331 Sample Accession: GSM3132739 ID: 303132739 12614. ATAC-seq_DE-WT2 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047330 Sample Accession: GSM3132738 ID: 303132738 12615. ATAC-seq_DE-WT1 Organism: Homo sapiens Source name: ES-derived progenitors Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047329 Sample Accession: GSM3132737 ID: 303132737 12616. ATAC-seq_ES-WT2 Organism: Homo sapiens Source name: Embryonic Stem cells Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047328 Sample Accession: GSM3132736 ID: 303132736 12617. ATAC-seq_ES-WT1 Organism: Homo sapiens Source name: Embryonic Stem cells Platform: GPL16791 Series: GSE114101 GSE114102 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3132nnn/GSM3132735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047327 Sample Accession: GSM3132735 ID: 303132735 12618. ATAC-seq_d9_Acetate Organism: Mus musculus Source name: d9 1mM_Glucose + 5mM Acetate Platform: GPL21493 Series: GSE128592 GSE128594 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3680nnn/GSM3680727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5547274 Sample Accession: GSM3680727 ID: 303680727 12619. ATAC-seq_d9_1mM Organism: Mus musculus Source name: d9 1mM_Glucose Platform: GPL21493 Series: GSE128592 GSE128594 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3680nnn/GSM3680726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5547273 Sample Accession: GSM3680726 ID: 303680726 12620. ATAC-seq_d5_Acetate Organism: Mus musculus Source name: d5 1mM_Glucose + 5mM Acetate Platform: GPL21493 Series: GSE128592 GSE128594 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3680nnn/GSM3680725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5547272 Sample Accession: GSM3680725 ID: 303680725 12621. ATAC-seq_d5_1mM Organism: Mus musculus Source name: d5 1mM_Glucose Platform: GPL21493 Series: GSE128592 GSE128594 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3680nnn/GSM3680724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5547271 Sample Accession: GSM3680724 ID: 303680724 12622. ATAC-seq_HAP1_WT_r2_shSMARCA4shARID2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812619 Sample Accession: GSM3757929 ID: 303757929 12623. ATAC-seq_HAP1_WT_r2_shSMARCA4 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812618 Sample Accession: GSM3757928 ID: 303757928 12624. ATAC-seq_HAP1_WT_r2_shControl Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812617 Sample Accession: GSM3757927 ID: 303757927 12625. ATAC-seq_HAP1_WT_r2_shARID2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812616 Sample Accession: GSM3757926 ID: 303757926 12626. ATAC-seq_HAP1_WT_r4_C631 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812615 Sample Accession: GSM3757925 ID: 303757925 12627. ATAC-seq_HAP1_WT_r1_shSMARCA4shARID2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812614 Sample Accession: GSM3757924 ID: 303757924 12628. ATAC-seq_HAP1_WT_r1_shSMARCA4 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812613 Sample Accession: GSM3757923 ID: 303757923 12629. ATAC-seq_HAP1_WT_r1_shControl Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812612 Sample Accession: GSM3757922 ID: 303757922 12630. ATAC-seq_HAP1_WT_r1_shARID2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812611 Sample Accession: GSM3757921 ID: 303757921 12631. ATAC-seq_HAP1_WT_r3_C631 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812610 Sample Accession: GSM3757920 ID: 303757920 12632. ATAC-seq_HAP1_WT_C631_r6 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812609 Sample Accession: GSM3757919 ID: 303757919 12633. ATAC-seq_HAP1_WT_C631_r5 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812608 Sample Accession: GSM3757918 ID: 303757918 12634. ATAC-seq_HAP1_SMARCC2_6062_10_r2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812607 Sample Accession: GSM3757917 ID: 303757917 12635. ATAC-seq_HAP1_SMARCC2_6062_10_r1 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812606 Sample Accession: GSM3757916 ID: 303757916 12636. ATAC-seq_HAP1_SMARCA4_r2_shControl Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812605 Sample Accession: GSM3757915 ID: 303757915 12637. ATAC-seq_HAP1_SMARCA4_r2_shARID2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812604 Sample Accession: GSM3757914 ID: 303757914 12638. ATAC-seq_HAP1_SMARCA4_r1_shControl Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812603 Sample Accession: GSM3757913 ID: 303757913 12639. ATAC-seq_HAP1_SMARCA4_r1_shARID2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812602 Sample Accession: GSM3757912 ID: 303757912 12640. ATAC-seq_HAP1_BCL7B_4278_10_r2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812601 Sample Accession: GSM3757911 ID: 303757911 12641. ATAC-seq_HAP1_BCL7B_4278_10_r1 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812600 Sample Accession: GSM3757910 ID: 303757910 12642. ATAC-seq_HAP1_ARID2_r2_shSMARCA4 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812599 Sample Accession: GSM3757909 ID: 303757909 12643. ATAC-seq_HAP1_ARID2_r2_shControl Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812598 Sample Accession: GSM3757908 ID: 303757908 12644. ATAC-seq_HAP1_ARID2_r1_shSMARCA4 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812597 Sample Accession: GSM3757907 ID: 303757907 12645. ATAC-seq_HAP1_ARID2_r1_shControl Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812596 Sample Accession: GSM3757906 ID: 303757906 12646. ATAC-seq_HAP1_ARID1B_582_5_r2 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812595 Sample Accession: GSM3757905 ID: 303757905 12647. ATAC-seq_HAP1_ARID1B_582_5_r1 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5812594 Sample Accession: GSM3757904 ID: 303757904 12648. ATAC-seq Nrd1-AA_drpd3_+Rap Organism: Saccharomyces cerevisiae Source name: ATAC-seq Nrd1-AA_drpd3_+Rap Platform: GPL21656 Series: GSE130946 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3756nnn/GSM3756700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5811098 Sample Accession: GSM3756700 ID: 303756700 12649. ATAC-seq Nrd1-AA_drpd3_-Rap Organism: Saccharomyces cerevisiae Source name: ATAC-seq Nrd1-AA_drpd3_-Rap Platform: GPL21656 Series: GSE130946 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3756nnn/GSM3756699/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5811097 Sample Accession: GSM3756699 ID: 303756699 12650. ATAC-seq Nrd1-AA_+Rap Organism: Saccharomyces cerevisiae Source name: ATAC-seq Nrd1-AA_+Rap Platform: GPL21656 Series: GSE130946 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3756nnn/GSM3756698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5811096 Sample Accession: GSM3756698 ID: 303756698 12651. ATAC-seq Nrd1-AA_-Rap Organism: Saccharomyces cerevisiae Source name: ATAC-seq Nrd1-AA_-Rap Platform: GPL21656 Series: GSE130946 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3756nnn/GSM3756697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5811095 Sample Accession: GSM3756697 ID: 303756697 12652. P2ten Organism: Mus musculus Source name: Postnatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231277 Sample Accession: GSM3554307 ID: 303554307 12653. P2nine Organism: Mus musculus Source name: Postnatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231276 Sample Accession: GSM3554306 ID: 303554306 12654. P2two Organism: Mus musculus Source name: Postnatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231275 Sample Accession: GSM3554305 ID: 303554305 12655. P0L3 Organism: Mus musculus Source name: Neonatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231274 Sample Accession: GSM3554304 ID: 303554304 12656. P0L2 Organism: Mus musculus Source name: Neonatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231273 Sample Accession: GSM3554303 ID: 303554303 12657. P0L1 Organism: Mus musculus Source name: Neonatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231272 Sample Accession: GSM3554302 ID: 303554302 12658. P0H3 Organism: Mus musculus Source name: Neonatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231271 Sample Accession: GSM3554301 ID: 303554301 12659. P0H2 Organism: Mus musculus Source name: Neonatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231270 Sample Accession: GSM3554300 ID: 303554300 12660. P0H1 Organism: Mus musculus Source name: Neonatal Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231269 Sample Accession: GSM3554299 ID: 303554299 12661. E16WTc Organism: Mus musculus Source name: Embryonic Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231268 Sample Accession: GSM3554298 ID: 303554298 12662. E16WTb Organism: Mus musculus Source name: Embryonic Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231267 Sample Accession: GSM3554297 ID: 303554297 12663. E16WTa Organism: Mus musculus Source name: Embryonic Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231266 Sample Accession: GSM3554296 ID: 303554296 12664. E13WTA Organism: Mus musculus Source name: Embryonic Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231265 Sample Accession: GSM3554295 ID: 303554295 12665. E13WT Organism: Mus musculus Source name: Embryonic Kidneys Platform: GPL19057 Series: GSE124804 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3554nnn/GSM3554294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5231264 Sample Accession: GSM3554294 ID: 303554294 12666. P2_GFP+_ATAC-seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE99818 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2653nnn/GSM2653445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2895840 Sample Accession: GSM2653445 ID: 302653445 12667. E14_GFP+_ATAC-seq Organism: Mus musculus Source name: retinal cells Platform: GPL17021 Series: GSE99818 FTP download: GEO (XLSX) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2653nnn/GSM2653442/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2895837 Sample Accession: GSM2653442 ID: 302653442 12668. ATAC-seq Organism: Homo sapiens Source name: B cell precursor leukemia Platform: GPL16791 Series: GSE115482 GSE115494 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3178nnn/GSM3178969/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4181484 Sample Accession: GSM3178969 ID: 303178969 12669. NF1-Runx1-Runx3-KO [ATAC-seq] Organism: Mus musculus Source name: Neurofibroma tumor Platform: GPL17021 Series: GSE122776 GSE122777 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5036610 Sample Accession: GSM3484776 ID: 303484776 12670. Nf1-KO [ATAC-seq] Organism: Mus musculus Source name: DRG Platform: GPL17021 Series: GSE122776 GSE122777 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5036609 Sample Accession: GSM3484775 ID: 303484775 12671. ATAC_THP1_24hrPMA_rep2 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL18573 Series: GSE130096 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713587 Sample Accession: GSM3731848 ID: 303731848 12672. ATAC_THP1_0hrPMA_rep2 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL18573 Series: GSE130096 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713586 Sample Accession: GSM3731847 ID: 303731847 12673. ATAC_THP1_24hrPMA_rep1 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL18573 Series: GSE130096 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713585 Sample Accession: GSM3731846 ID: 303731846 12674. ATAC_THP1_0hrPMA_rep1 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL18573 Series: GSE130096 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713584 Sample Accession: GSM3731845 ID: 303731845 12675. ATACMe_THP1_1hrPMA_rep2 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713581 Sample Accession: GSM3731842 ID: 303731842 12676. ATACMe_THP1_0.5hrPMA_rep2 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713580 Sample Accession: GSM3731841 ID: 303731841 12677. ATACMe_THP1_24hrPMA_rep2 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713579 Sample Accession: GSM3731840 ID: 303731840 12678. ATACMe_THP1_2hrPMA_rep2 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713578 Sample Accession: GSM3731839 ID: 303731839 12679. ATACMe_THP1_0hrPMA_rep2 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713577 Sample Accession: GSM3731838 ID: 303731838 12680. ATACMe_THP1_1hrPMA_rep1 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713576 Sample Accession: GSM3731837 ID: 303731837 12681. ATACMe_THP1_0.5hrPMA_rep1 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713575 Sample Accession: GSM3731836 ID: 303731836 12682. ATACMe_THP1_24hrPMA_rep1 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731835/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713574 Sample Accession: GSM3731835 ID: 303731835 12683. ATACMe_THP1_2hrPMA_rep1 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713573 Sample Accession: GSM3731834 ID: 303731834 12684. ATACMe_THP1_0hrPMA_rep1 Organism: Homo sapiens Source name: THP-1 Monocyte Platform: GPL20301 Series: GSE130096 FTP download: GEO (BROADPEAK, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3731nnn/GSM3731833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5713572 Sample Accession: GSM3731833 ID: 303731833 12685. RL95_2 ATAC-seq replicate 2 Organism: Homo sapiens Source name: Endometrial adenosquamous carcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132366 Sample Accession: GSM3161729 ID: 303161729 12686. RL95_2 ATAC-seq replicate 1 Organism: Homo sapiens Source name: Endometrial adenosquamous carcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132365 Sample Accession: GSM3161728 ID: 303161728 12687. SNU685 ATAC-seq replicate 2 Organism: Homo sapiens Source name: Uterine carcinosarcoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132364 Sample Accession: GSM3161727 ID: 303161727 12688. SNU685 ATAC-seq replicate 1 Organism: Homo sapiens Source name: Uterine carcinosarcoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132363 Sample Accession: GSM3161726 ID: 303161726 12689. OVCAR8 ATAC-seq replicate 2 Organism: Homo sapiens Source name: High grade ovarian serous adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132362 Sample Accession: GSM3161725 ID: 303161725 12690. OVCAR8 ATAC-seq replicate 1 Organism: Homo sapiens Source name: High grade ovarian serous adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132361 Sample Accession: GSM3161724 ID: 303161724 12691. MDA_MB_436 ATAC-seq replicate 2 Organism: Homo sapiens Source name: Breast adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132360 Sample Accession: GSM3161723 ID: 303161723 12692. MDA_MB_436 ATAC-seq replicate 1 Organism: Homo sapiens Source name: Breast adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132359 Sample Accession: GSM3161722 ID: 303161722 12693. MDA_MB_231 ATAC-seq replicate 2 Organism: Homo sapiens Source name: Breast adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132358 Sample Accession: GSM3161721 ID: 303161721 12694. MDA_MB_231 ATAC-seq replicate 1 Organism: Homo sapiens Source name: Breast adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132357 Sample Accession: GSM3161720 ID: 303161720 12695. KLE ATAC-seq replicate 2 Organism: Homo sapiens Source name: Endometrial adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132356 Sample Accession: GSM3161719 ID: 303161719 12696. KLE ATAC-seq replicate 1 Organism: Homo sapiens Source name: Endometrial adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132355 Sample Accession: GSM3161718 ID: 303161718 12697. JHUCS_1 ATAC-seq replicate 2 Organism: Homo sapiens Source name: Uterine carcinosarcoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132354 Sample Accession: GSM3161717 ID: 303161717 12698. JHUCS_1 ATAC-seq replicate 1 Organism: Homo sapiens Source name: Uterine carcinosarcoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132353 Sample Accession: GSM3161716 ID: 303161716 12699. Ishikawa ATAC-seq replicate 2 Organism: Homo sapiens Source name: Endometrial adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132352 Sample Accession: GSM3161715 ID: 303161715 12700. Ishikawa ATAC-seq replicate 1 Organism: Homo sapiens Source name: Endometrial adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132351 Sample Accession: GSM3161714 ID: 303161714 12701. Caov3 ATAC-seq replicate 2 Organism: Homo sapiens Source name: High grade ovarian serous adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132350 Sample Accession: GSM3161713 ID: 303161713 12702. Caov3 ATAC-seq replicate 1 Organism: Homo sapiens Source name: High grade ovarian serous adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132349 Sample Accession: GSM3161712 ID: 303161712 12703. AN3_CA ATAC-seq replicate 2 Organism: Homo sapiens Source name: Endometrial adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132348 Sample Accession: GSM3161711 ID: 303161711 12704. AN3_CA ATAC-seq replicate 1 Organism: Homo sapiens Source name: Endometrial adenocarcinoma Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132347 Sample Accession: GSM3161710 ID: 303161710 12705. ACI_158 ATAC-seq replicate 2 Organism: Homo sapiens Source name: Endometrial serous adenocarcinoma  Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132346 Sample Accession: GSM3161709 ID: 303161709 12706. ACI_158 ATAC-seq replicate 1 Organism: Homo sapiens Source name: Endometrial serous adenocarcinoma  Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132345 Sample Accession: GSM3161708 ID: 303161708 12707. ACI_126 ATAC-seq replicate 2 Organism: Homo sapiens Source name: Endometrial serous adenocarcinoma  Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132344 Sample Accession: GSM3161707 ID: 303161707 12708. ACI_126 ATAC-seq replicate 1 Organism: Homo sapiens Source name: Endometrial serous adenocarcinoma  Platform: GPL16791 Series: GSE114964 GSE129339 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3161nnn/GSM3161706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4132343 Sample Accession: GSM3161706 ID: 303161706 12709. ATAC-seq_HAP1_WT_r2_C631 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503171 Sample Accession: GSM2897142 ID: 302897142 12710. ATAC-seq_HAP1_WT_r1_C631 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503170 Sample Accession: GSM2897141 ID: 302897141 12711. ATAC-seq_HAP1_SMARCD3_r2_2480_12 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503169 Sample Accession: GSM2897140 ID: 302897140 12712. ATAC-seq_HAP1_SMARCD3_r1_2480_12 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503168 Sample Accession: GSM2897139 ID: 302897139 12713. ATAC-seq_HAP1_SMARCD2_r2_2782_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503167 Sample Accession: GSM2897138 ID: 302897138 12714. ATAC-seq_HAP1_SMARCD2_r1_2782_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503166 Sample Accession: GSM2897137 ID: 302897137 12715. ATAC-seq_HAP1_SMARCD1_r2_2478_6 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503165 Sample Accession: GSM2897136 ID: 302897136 12716. ATAC-seq_HAP1_SMARCD1_r1_2478_6 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503164 Sample Accession: GSM2897135 ID: 302897135 12717. ATAC-seq_HAP1_SMARCC1_r2_2476_12 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503163 Sample Accession: GSM2897134 ID: 302897134 12718. ATAC-seq_HAP1_SMARCC1_r1_2476_12 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503162 Sample Accession: GSM2897133 ID: 302897133 12719. ATAC-seq_HAP1_SMARCA4_r2_2878_6 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503161 Sample Accession: GSM2897132 ID: 302897132 12720. ATAC-seq_HAP1_SMARCA4_r2_2878_4 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503160 Sample Accession: GSM2897131 ID: 302897131 12721. ATAC-seq_HAP1_SMARCA4_r1_2878_6 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503159 Sample Accession: GSM2897130 ID: 302897130 12722. ATAC-seq_HAP1_SMARCA4_r1_2878_4 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503158 Sample Accession: GSM2897129 ID: 302897129 12723. ATAC-seq_HAP1_SMARCA2_r2_4055_12 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503157 Sample Accession: GSM2897128 ID: 302897128 12724. ATAC-seq_HAP1_SMARCA2_r1_4055_12 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503156 Sample Accession: GSM2897127 ID: 302897127 12725. ATAC-seq_HAP1_PHF10_r2_2778_11 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503155 Sample Accession: GSM2897126 ID: 302897126 12726. ATAC-seq_HAP1_PHF10_r1_2778_11 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503154 Sample Accession: GSM2897125 ID: 302897125 12727. ATAC-seq_HAP1_PBRM1_r2_1135_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503153 Sample Accession: GSM2897124 ID: 302897124 12728. ATAC-seq_HAP1_PBRM1_r1_1135_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503152 Sample Accession: GSM2897123 ID: 302897123 12729. ATAC-seq_HAP1_DPF3_r2_2776_1 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503151 Sample Accession: GSM2897122 ID: 302897122 12730. ATAC-seq_HAP1_DPF3_r1_2776_1 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503150 Sample Accession: GSM2897121 ID: 302897121 12731. ATAC-seq_HAP1_DPF2_r2_2777_4 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503149 Sample Accession: GSM2897120 ID: 302897120 12732. ATAC-seq_HAP1_DPF2_r1_2777_4 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503148 Sample Accession: GSM2897119 ID: 302897119 12733. ATAC-seq_HAP1_DPF1_r2_2779_11 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503147 Sample Accession: GSM2897118 ID: 302897118 12734. ATAC-seq_HAP1_DPF1_r1_2779_11 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503146 Sample Accession: GSM2897117 ID: 302897117 12735. ATAC-seq_HAP1_BRD9_r2_934_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503145 Sample Accession: GSM2897116 ID: 302897116 12736. ATAC-seq_HAP1_BRD9_r1_934_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503144 Sample Accession: GSM2897115 ID: 302897115 12737. ATAC-seq_HAP1_BRD7_r2_923_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503143 Sample Accession: GSM2897114 ID: 302897114 12738. ATAC-seq_HAP1_BRD7_r1_923_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503142 Sample Accession: GSM2897113 ID: 302897113 12739. ATAC-seq_HAP1_BCL7B_r2_4278_8 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503141 Sample Accession: GSM2897112 ID: 302897112 12740. ATAC-seq_HAP1_BCL7B_r1_4278_8 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503140 Sample Accession: GSM2897111 ID: 302897111 12741. ATAC-seq_HAP1_BCL7A_r2_2434_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503139 Sample Accession: GSM2897110 ID: 302897110 12742. ATAC-seq_HAP1_BCL7A_r1_2434_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503138 Sample Accession: GSM2897109 ID: 302897109 12743. ATAC-seq_HAP1_BCL11B_r2_2432_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503137 Sample Accession: GSM2897108 ID: 302897108 12744. ATAC-seq_HAP1_BCL11B_r1_2432_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503136 Sample Accession: GSM2897107 ID: 302897107 12745. ATAC-seq_HAP1_BCL11A_r2_2426_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503115 Sample Accession: GSM2897106 ID: 302897106 12746. ATAC-seq_HAP1_BCL11A_r1_2426_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503114 Sample Accession: GSM2897105 ID: 302897105 12747. ATAC-seq_HAP1_ARID2_r2_907_9 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503135 Sample Accession: GSM2897104 ID: 302897104 12748. ATAC-seq_HAP1_ARID2_r1_907_9 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503134 Sample Accession: GSM2897103 ID: 302897103 12749. ATAC-seq_HAP1_ARID1B_r2_582_7 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503133 Sample Accession: GSM2897102 ID: 302897102 12750. ATAC-seq_HAP1_ARID1B_r1_582_7 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503132 Sample Accession: GSM2897101 ID: 302897101 12751. ATAC-seq_HAP1_ARID1A_r2_618_3 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503131 Sample Accession: GSM2897100 ID: 302897100 12752. ATAC-seq_HAP1_ARID1A_r2_618_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503130 Sample Accession: GSM2897099 ID: 302897099 12753. ATAC-seq_HAP1_ARID1A_r1_618_3 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503129 Sample Accession: GSM2897098 ID: 302897098 12754. ATAC-seq_HAP1_ARID1A_r1_618_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503128 Sample Accession: GSM2897097 ID: 302897097 12755. ATAC-seq_HAP1_ACTB_r2_2471_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503127 Sample Accession: GSM2897096 ID: 302897096 12756. ATAC-seq_HAP1_ACTB_r1_2471_10 Organism: Homo sapiens Source name: HAP1 cell line Platform: GPL20301 Series: GSE108386 GSE108390 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3503126 Sample Accession: GSM2897095 ID: 302897095 12757. ATAC-seq_naive_hESC_rep2 Organism: Homo sapiens Source name: ATAC-seq_naive_hESC Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763031 Sample Accession: GSM3738378 ID: 303738378 12758. ATAC-seq_naive_hESC_rep1 Organism: Homo sapiens Source name: ATAC-seq_naive_hESC Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763030 Sample Accession: GSM3738377 ID: 303738377 12759. ATAC-seq_primed_hESC_rep2 Organism: Homo sapiens Source name: ATAC-seq_primed_hESC Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763029 Sample Accession: GSM3738376 ID: 303738376 12760. ATAC-seq_primed_hESC_rep1 Organism: Homo sapiens Source name: ATAC-seq_primed_hESC Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763028 Sample Accession: GSM3738375 ID: 303738375 12761. ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA_rep3 Organism: Homo sapiens Source name: ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763027 Sample Accession: GSM3738374 ID: 303738374 12762. ATAC-seq_naive_hESC_dCAS9-KRAB_Empty_rep3 Organism: Homo sapiens Source name: ATAC-seq_naive_hESC_dCAS9-KRAB_Empty Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763026 Sample Accession: GSM3738373 ID: 303738373 12763. ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA_rep2 Organism: Homo sapiens Source name: ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763025 Sample Accession: GSM3738372 ID: 303738372 12764. ATAC-seq_naive_hESC_dCAS9-KRAB_Empty_rep2 Organism: Homo sapiens Source name: ATAC-seq_naive_hESC_dCAS9-KRAB_Empty Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763024 Sample Accession: GSM3738371 ID: 303738371 12765. ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA_rep1 Organism: Homo sapiens Source name: ATAC-seq_naive_hESC_dCAS9-KRAB+sgRNA Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738370/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763023 Sample Accession: GSM3738370 ID: 303738370 12766. ATAC-seq_naive_hESC_dCAS9-KRAB_Empty_rep1 Organism: Homo sapiens Source name: ATAC-seq_naive_hESC_dCAS9-KRAB_Empty Platform: GPL16791 Series: GSE117395 GSE130418 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3738nnn/GSM3738369/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5763022 Sample Accession: GSM3738369 ID: 303738369 12767. ATAC_FLS_T72_rep2 Organism: Homo sapiens Source name: Rheumatoid Arthritis (RA) patient derived Fibroblast-like Synoviocytes Platform: GPL16791 Series: GSE128644 GSE128645 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3681nnn/GSM3681622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5549092 Sample Accession: GSM3681622 ID: 303681622 12768. ATAC_FLS_T24_rep2 Organism: Homo sapiens Source name: Rheumatoid Arthritis (RA) patient derived Fibroblast-like Synoviocytes Platform: GPL16791 Series: GSE128644 GSE128645 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3681nnn/GSM3681621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5549091 Sample Accession: GSM3681621 ID: 303681621 12769. ATAC_FLS_T3_rep2 Organism: Homo sapiens Source name: Rheumatoid Arthritis (RA) patient derived Fibroblast-like Synoviocytes Platform: GPL16791 Series: GSE128644 GSE128645 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3681nnn/GSM3681620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5549090 Sample Accession: GSM3681620 ID: 303681620 12770. ATAC_FLS_Ctrl_rep2 Organism: Homo sapiens Source name: Rheumatoid Arthritis (RA) patient derived Fibroblast-like Synoviocytes Platform: GPL16791 Series: GSE128644 GSE128645 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3681nnn/GSM3681619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5549089 Sample Accession: GSM3681619 ID: 303681619 12771. ATAC_FLS_T72_rep1 Organism: Homo sapiens Source name: Rheumatoid Arthritis (RA) patient derived Fibroblast-like Synoviocytes Platform: GPL16791 Series: GSE128644 GSE128645 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3681nnn/GSM3681618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5549088 Sample Accession: GSM3681618 ID: 303681618 12772. ATAC_FLS_Ctrl_rep1 Organism: Homo sapiens Source name: Rheumatoid Arthritis (RA) patient derived Fibroblast-like Synoviocytes Platform: GPL16791 Series: GSE128644 GSE128645 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3681nnn/GSM3681617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5549087 Sample Accession: GSM3681617 ID: 303681617 12773. HK-2 ATAC-seq shPBRM1 replicate 3 Organism: Homo sapiens Source name: HK-2 cells Platform: GPL16791 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990693 Sample Accession: GSM3110048 ID: 303110048 12774. HK-2 ATAC-seq shPBRM1 replicate 2 Organism: Homo sapiens Source name: HK-2 cells Platform: GPL16791 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990692 Sample Accession: GSM3110047 ID: 303110047 12775. HK-2 ATAC-seq shPBRM1 replicate 1 Organism: Homo sapiens Source name: HK-2 cells Platform: GPL16791 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990691 Sample Accession: GSM3110046 ID: 303110046 12776. HK-2 ATAC-seq null replicate 3 Organism: Homo sapiens Source name: HK-2 cells Platform: GPL16791 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990690 Sample Accession: GSM3110045 ID: 303110045 12777. HK-2 ATAC-seq null replicate 2 Organism: Homo sapiens Source name: HK-2 cells Platform: GPL16791 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990689 Sample Accession: GSM3110044 ID: 303110044 12778. HK-2 ATAC-seq null replicate 1 Organism: Homo sapiens Source name: HK-2 cells Platform: GPL16791 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990688 Sample Accession: GSM3110043 ID: 303110043 12779. NMuMG ATAC-seq shPBRM1 replicate 3 Organism: Mus musculus Source name: NMuMG cells Platform: GPL17021 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990699 Sample Accession: GSM3110054 ID: 303110054 12780. NMuMG ATAC-seq shPBRM1 replicate 2 Organism: Mus musculus Source name: NMuMG cells Platform: GPL17021 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990698 Sample Accession: GSM3110053 ID: 303110053 12781. NMuMG ATAC-seq shPBRM1 replicate 1 Organism: Mus musculus Source name: NMuMG cells Platform: GPL17021 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990697 Sample Accession: GSM3110052 ID: 303110052 12782. NMuMG ATAC-seq null replicate 3 Organism: Mus musculus Source name: NMuMG cells Platform: GPL17021 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990696 Sample Accession: GSM3110051 ID: 303110051 12783. NMuMG ATAC-seq null replicate 2 Organism: Mus musculus Source name: NMuMG cells Platform: GPL17021 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990695 Sample Accession: GSM3110050 ID: 303110050 12784. NMuMG ATAC-seq null replicate 1 Organism: Mus musculus Source name: NMuMG cells Platform: GPL17021 Series: GSE113606 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3990694 Sample Accession: GSM3110049 ID: 303110049 12785. P9408: siPadi2-rep3 Organism: Mus musculus Source name: oli-neu Platform: GPL17021 Series: GSE115929 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3193nnn/GSM3193435/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4226211 Sample Accession: GSM3193435 ID: 303193435 12786. P9408: siPadi2-rep2 Organism: Mus musculus Source name: oli-neu Platform: GPL17021 Series: GSE115929 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3193nnn/GSM3193434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4226210 Sample Accession: GSM3193434 ID: 303193434 12787. P7167: siPadi2-rep1 Organism: Mus musculus Source name: oli-neu Platform: GPL17021 Series: GSE115929 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3193nnn/GSM3193433/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4226209 Sample Accession: GSM3193433 ID: 303193433 12788. P9408: siCtr-rep3 Organism: Mus musculus Source name: oli-neu Platform: GPL17021 Series: GSE115929 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3193nnn/GSM3193432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4226208 Sample Accession: GSM3193432 ID: 303193432 12789. P9408: siCtr-rep2 Organism: Mus musculus Source name: oli-neu Platform: GPL17021 Series: GSE115929 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3193nnn/GSM3193431/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4226207 Sample Accession: GSM3193431 ID: 303193431 12790. P7167: siCtr-rep1 Organism: Mus musculus Source name: oli-neu Platform: GPL17021 Series: GSE115929 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3193nnn/GSM3193430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4226206 Sample Accession: GSM3193430 ID: 303193430 12791. ATAC-seq_WTIshikawa_1hrE2 Organism: Homo sapiens Source name: Endometrioid adenocarcinoma_1 hr 10nM E2 Platform: GPL16791 Series: GSE129802 GSE129805 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5683092 Sample Accession: GSM3722306 ID: 303722306 12792. ATAC-seq_WTIshikawa_DMSO Organism: Homo sapiens Source name: Endometrioid adenocarcinoma_1 hr 0.1% DMSO Platform: GPL16791 Series: GSE129802 GSE129805 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5683091 Sample Accession: GSM3722305 ID: 303722305 12793. ATAC-seq_ETV4KO2_1hrE2 Organism: Homo sapiens Source name: Endometrioid adenocarcinoma_1 hr 10nM E2 Platform: GPL16791 Series: GSE129802 GSE129805 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5683090 Sample Accession: GSM3722304 ID: 303722304 12794. ATAC-seq_ETV4KO2_DMSO Organism: Homo sapiens Source name: Endometrioid adenocarcinoma_1 hr 0.1% DMSO Platform: GPL16791 Series: GSE129802 GSE129805 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5683089 Sample Accession: GSM3722303 ID: 303722303 12795. ATAC-seq_ETV4KO1_1hrE2 Organism: Homo sapiens Source name: Endometrioid adenocarcinoma_1 hr 10nM E2 Platform: GPL16791 Series: GSE129802 GSE129805 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5683088 Sample Accession: GSM3722302 ID: 303722302 12796. ATAC-seq_ETV4KO1_DMSO Organism: Homo sapiens Source name: Endometrioid adenocarcinoma_1 hr 0.1% DMSO Platform: GPL16791 Series: GSE129802 GSE129805 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3722nnn/GSM3722301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5683087 Sample Accession: GSM3722301 ID: 303722301 12797. iPSC ATAC-seq_rep2 Organism: Mus musculus Source name: iPSC Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755470 Sample Accession: GSM2587536 ID: 302587536 12798. iPSC ATAC-seq_rep1 Organism: Mus musculus Source name: iPSC Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755469 Sample Accession: GSM2587535 ID: 302587535 12799. iTSC ATAC-seq_rep2 Organism: Mus musculus Source name: iTSC Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755468 Sample Accession: GSM2587534 ID: 302587534 12800. iTSC ATAC-seq_rep1 Organism: Mus musculus Source name: iTSC Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755467 Sample Accession: GSM2587533 ID: 302587533 12801. MEF GETMS-TSC ATAC-seq_rep2 Organism: Mus musculus Source name: MEF GETMS-TSC Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755466 Sample Accession: GSM2587532 ID: 302587532 12802. MEF GETMS-TSC ATAC-seq_rep1 Organism: Mus musculus Source name: MEF GETMS-TSC Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755465 Sample Accession: GSM2587531 ID: 302587531 12803. MEF GETMS-ESC ATAC-seq Organism: Mus musculus Source name: MEF GETMS-ESC Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755464 Sample Accession: GSM2587530 ID: 302587530 12804. MEF GETM ATAC-seq_rep2 Organism: Mus musculus Source name: MEF GETM Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755463 Sample Accession: GSM2587529 ID: 302587529 12805. MEF GETM ATAC-seq_rep1 Organism: Mus musculus Source name: MEF GETM Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755462 Sample Accession: GSM2587528 ID: 302587528 12806. MEF GTMS ATAC-seq_rep2 Organism: Mus musculus Source name: MEF GTMS Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755461 Sample Accession: GSM2587527 ID: 302587527 12807. MEF GTMS ATAC-seq_rep1 Organism: Mus musculus Source name: MEF GTMS Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755460 Sample Accession: GSM2587526 ID: 302587526 12808. MEF OSKM ATAC-seq_rep2 Organism: Mus musculus Source name: MEF OSKM Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755459 Sample Accession: GSM2587525 ID: 302587525 12809. MEF OSKM ATAC-seq_rep1 Organism: Mus musculus Source name: MEF OSKM Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755458 Sample Accession: GSM2587524 ID: 302587524 12810. MEF ATAC-seq Organism: Mus musculus Source name: MEF Platform: GPL19057 Series: GSE98124 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2755457 Sample Accession: GSM2587523 ID: 302587523 12811. ATAC-seq SNF5 rep3 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587663 Sample Accession: GSM2937026 ID: 302937026 12812. ATAC-seq SNF5 rep2 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587662 Sample Accession: GSM2937025 ID: 302937025 12813. ATAC-seq SNF5 rep1 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587661 Sample Accession: GSM2937024 ID: 302937024 12814. ATAC-seq OMOMYC rep3 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587660 Sample Accession: GSM2937023 ID: 302937023 12815. ATAC-seq OMOMYC rep2 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587659 Sample Accession: GSM2937022 ID: 302937022 12816. ATAC-seq OMOMYC rep1 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587658 Sample Accession: GSM2937021 ID: 302937021 12817. ATAC-seq EGFP rep3 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587657 Sample Accession: GSM2937020 ID: 302937020 12818. ATAC-seq EGFP rep2 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587656 Sample Accession: GSM2937019 ID: 302937019 12819. ATAC-seq EGFP rep1 Organism: Homo sapiens Source name: MRT cells Platform: GPL16791 Series: GSE109310 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2937nnn/GSM2937018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587655 Sample Accession: GSM2937018 ID: 302937018 12820. P5 PDGFRa-GFP ATAC-seq Organism: Mus musculus Source name: cerebral cortex Platform: GPL21103 Series: GSE122871 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3517nnn/GSM3517455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5161755 Sample Accession: GSM3517455 ID: 303517455 12821. E14.5 PDGFRa-GFP ATAC-seq Organism: Mus musculus Source name: cerebral cortex Platform: GPL21103 Series: GSE122871 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3517nnn/GSM3517454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5161754 Sample Accession: GSM3517454 ID: 303517454 12822. ATAC-seq Plasma cell Organism: Mus musculus Source name: ex vivo sorted B220- BM plasma cells Platform: GPL17021 Series: GSE113014 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3093nnn/GSM3093579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3925636 Sample Accession: GSM3093579 ID: 303093579 12823. ATAC-seq Naïve B Organism: Mus musculus Source name: ex vivo sorted naive B cells Platform: GPL17021 Series: GSE113014 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3093nnn/GSM3093578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3925635 Sample Accession: GSM3093578 ID: 303093578 12824. ATAC-seq: iNeuron line 2 condition: iNeuron replicate: 2 Organism: Homo sapiens; Rattus norvegicus Source name: iNeuron line 2 Platform: GPL25584 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706120 Sample Accession: GSM3393035 ID: 303393035 12825. ATAC-seq: iNeuron line 2 condition: iNeuron replicate: 1 Organism: Rattus norvegicus; Homo sapiens Source name: iNeuron line 2 Platform: GPL25584 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706119 Sample Accession: GSM3393034 ID: 303393034 12826. ATAC-seq: iNeuron line 1 condition: iNeuron replicate: 2 Organism: Rattus norvegicus; Homo sapiens Source name: iNeuron line 1 Platform: GPL25584 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706118 Sample Accession: GSM3393033 ID: 303393033 12827. ATAC-seq: iNeuron line 1 condition: iNeuron replicate: 1 Organism: Rattus norvegicus; Homo sapiens Source name: iNeuron line 1 Platform: GPL25584 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706117 Sample Accession: GSM3393032 ID: 303393032 12828. mESC ATAC-seq, biological replicate 2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE119663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4659162 Sample Accession: GSM3380557 ID: 303380557 12829. mESC ATAC-seq, biological replicate 1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE119663 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4659161 Sample Accession: GSM3380556 ID: 303380556 12830. revitalized MSCs ATAC-Seq rep3 Organism: Mus musculus Source name: bone marrow mesenchymal-derived stromal cells Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833639 Sample Accession: GSM3061419 ID: 303061419 12831. revitalized MSCs ATAC-Seq rep2 Organism: Mus musculus Source name: bone marrow mesenchymal-derived stromal cells Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833638 Sample Accession: GSM3061418 ID: 303061418 12832. revitalized MSCs ATAC-Seq rep1 Organism: Mus musculus Source name: bone marrow mesenchymal-derived stromal cells Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833637 Sample Accession: GSM3061417 ID: 303061417 12833. control stroma ATAC-Seq rep3 Organism: Mus musculus Source name: bone marrow mesenchymal-derived stromal cells Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833636 Sample Accession: GSM3061416 ID: 303061416 12834. control stroma ATAC-Seq rep2 Organism: Mus musculus Source name: bone marrow mesenchymal-derived stromal cells Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833635 Sample Accession: GSM3061415 ID: 303061415 12835. control stroma ATAC-Seq rep1 Organism: Mus musculus Source name: bone marrow mesenchymal-derived stromal cells Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833634 Sample Accession: GSM3061414 ID: 303061414 12836. Scf-GFP(+) cells ATAC-Seq rep2 Organism: Mus musculus Source name: bone marrow mesenchymal-derived stromal cells Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833633 Sample Accession: GSM3061413 ID: 303061413 12837. Scf-GFP(+) cells ATAC-Seq rep1 Organism: Mus musculus Source name: bone marrow mesenchymal-derived stromal cells Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833632 Sample Accession: GSM3061412 ID: 303061412 12838. Scf-GFP(-) cells ATAC-Seq rep2 Organism: Mus musculus Source name: bone marrow stromal cell Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833631 Sample Accession: GSM3061411 ID: 303061411 12839. Scf-GFP(-) cells ATAC-Seq rep1 Organism: Mus musculus Source name: bone marrow stromal cell Platform: GPL17021 Series: GSE112231 GSE112233 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3061nnn/GSM3061410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3833630 Sample Accession: GSM3061410 ID: 303061410 12840. ATAC-seq: Fibroblast line 1 condition: OC3+Bclxl replicate: 2 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706128 Sample Accession: GSM3393043 ID: 303393043 12841. ATAC-seq: Fibroblast line 1 condition: OC3+Bclxl replicate: 1 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706127 Sample Accession: GSM3393042 ID: 303393042 12842. ATAC-seq: Fibroblast line 1 condition: OC2+Bclxl replicate: 2 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706126 Sample Accession: GSM3393041 ID: 303393041 12843. ATAC-seq: Fibroblast line 1 condition: OC2+Bclxl replicate: 1 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706125 Sample Accession: GSM3393040 ID: 303393040 12844. ATAC-seq: Fibroblast line 1 condition: OC1+Bclxl replicate: 2 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706124 Sample Accession: GSM3393039 ID: 303393039 12845. ATAC-seq: Fibroblast line 1 condition: OC1+Bclxl replicate: 1 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706123 Sample Accession: GSM3393038 ID: 303393038 12846. ATAC-seq: Fibroblast line 1 condition: Bclxl replicate: 2 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706122 Sample Accession: GSM3393037 ID: 303393037 12847. ATAC-seq: Fibroblast line 1 condition: Bclxl replicate: 1 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706121 Sample Accession: GSM3393036 ID: 303393036 12848. ATAC-seq: iPSC line 2 condition: iPSC replicate: 2 Organism: Homo sapiens Source name: iPSC line 2 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706116 Sample Accession: GSM3393031 ID: 303393031 12849. ATAC-seq: iPSC line 2 condition: iPSC replicate: 1 Organism: Homo sapiens Source name: iPSC line 2 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706115 Sample Accession: GSM3393030 ID: 303393030 12850. ATAC-seq: iPSC line 1 condition: iPSC replicate: 2 Organism: Homo sapiens Source name: iPSC line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706114 Sample Accession: GSM3393029 ID: 303393029 12851. ATAC-seq: iPSC line 1 condition: iPSC replicate: 1 Organism: Homo sapiens Source name: iPSC line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706113 Sample Accession: GSM3393028 ID: 303393028 12852. ATAC-seq: Fibroblast line 2 condition: Fibroblast replicate: 2 Organism: Homo sapiens Source name: Fibroblast line 2 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706112 Sample Accession: GSM3393027 ID: 303393027 12853. ATAC-seq: Fibroblast line 2 condition: Fibroblast replicate: 1 Organism: Homo sapiens Source name: Fibroblast line 2 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706111 Sample Accession: GSM3393026 ID: 303393026 12854. ATAC-seq: Fibroblast line 1 condition: Fibroblast replicate: 2 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706110 Sample Accession: GSM3393025 ID: 303393025 12855. ATAC-seq: Fibroblast line 1 condition: Fibroblast replicate: 1 Organism: Homo sapiens Source name: Fibroblast line 1 Platform: GPL18573 Series: GSE120083 GSE120131 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3393nnn/GSM3393024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4706109 Sample Accession: GSM3393024 ID: 303393024 12856. ATACseq_TNF_2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL16791 Series: GSE129167 GSE129229 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3701nnn/GSM3701914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5624362 Sample Accession: GSM3701914 ID: 303701914 12857. ATACseq_TNF_1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL16791 Series: GSE129167 GSE129229 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3701nnn/GSM3701913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5624361 Sample Accession: GSM3701913 ID: 303701913 12858. ATACseq_CTL_2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL16791 Series: GSE129167 GSE129229 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3701nnn/GSM3701912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5624360 Sample Accession: GSM3701912 ID: 303701912 12859. ATACseq_CTL_1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL16791 Series: GSE129167 GSE129229 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3701nnn/GSM3701911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5624359 Sample Accession: GSM3701911 ID: 303701911 12860. ChIPseq-MEF-GRKO-GFP-GRtetra_abGFP_DEX_rep2 Organism: Mus musculus Source name: MEF-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523201 Sample Accession: GSM2907283 ID: 302907283 12861. ChIPseq-MEF-GRKO-GFP-GRtetra_abGFP_DEX_rep1 Organism: Mus musculus Source name: MEF-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523200 Sample Accession: GSM2907282 ID: 302907282 12862. ChIPseq-MEF-GRKO-GFP-GRtetra_abGFP_NT_rep2 Organism: Mus musculus Source name: MEF-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523199 Sample Accession: GSM2907281 ID: 302907281 12863. ChIPseq-MEF-GRKO-GFP-GRtetra_abGFP_NT_rep1 Organism: Mus musculus Source name: MEF-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523198 Sample Accession: GSM2907280 ID: 302907280 12864. ChIPseq-MEF-GRKO-GFP-GRwt_abGFP_DEX_rep2 Organism: Mus musculus Source name: MEF-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523197 Sample Accession: GSM2907279 ID: 302907279 12865. ChIPseq-MEF-GRKO-GFP-GRwt_abGFP_DEX_rep1 Organism: Mus musculus Source name: MEF-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523196 Sample Accession: GSM2907278 ID: 302907278 12866. ChIPseq-MEF-GRKO_abGFP_DEX_rep2 Organism: Mus musculus Source name: MEF-KOGR cells, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523195 Sample Accession: GSM2907277 ID: 302907277 12867. ChIPseq-MEF-GRKO_abGFP_DEX_rep1 Organism: Mus musculus Source name: MEF-KOGR cells, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523194 Sample Accession: GSM2907276 ID: 302907276 12868. ChIPseq-MEF_abGR_DEX Organism: Mus musculus Source name: Wild-type MEF cells, Dex-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523193 Sample Accession: GSM2907275 ID: 302907275 12869. ChIPseq-GRKO_input Organism: Mus musculus Source name: 3617-KOGR cells, ChIP input Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523192 Sample Accession: GSM2907274 ID: 302907274 12870. ChIPseq-GRKO-GFP-GRtetra_abSMARCA4_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, SMARCA4 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523187 Sample Accession: GSM2907269 ID: 302907269 12871. ChIPseq-GRKO-GFP-GRtetra_abSMARCA4_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, SMARCA4 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523186 Sample Accession: GSM2907268 ID: 302907268 12872. ChIPseq-GRKO-GFP-GRtetra_abH3K4me1_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523185 Sample Accession: GSM2907267 ID: 302907267 12873. ChIPseq-GRKO-GFP-GRtetra_abH3K4me1_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523184 Sample Accession: GSM2907266 ID: 302907266 12874. ChIPseq-GRKO-GFP-GRtetra_abH3K4me1_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523183 Sample Accession: GSM2907265 ID: 302907265 12875. ChIPseq-GRKO-GFP-GRtetra_abH3K4me1_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523182 Sample Accession: GSM2907264 ID: 302907264 12876. ChIPseq-GRKO-GFP-GRtetra_abH3K27ac_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523181 Sample Accession: GSM2907263 ID: 302907263 12877. ChIPseq-GRKO-GFP-GRtetra_abH3K27ac_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523180 Sample Accession: GSM2907262 ID: 302907262 12878. ChIPseq-GRKO-GFP-GRtetra_abH3K27ac_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523179 Sample Accession: GSM2907261 ID: 302907261 12879. ChIPseq-GRKO-GFP-GRtetra_abH3K27ac_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523178 Sample Accession: GSM2907260 ID: 302907260 12880. ChIPseq-GRKO-GFP-GRtetra_abGFP_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523177 Sample Accession: GSM2907259 ID: 302907259 12881. ChIPseq-GRKO-GFP-GRtetra_abGFP_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523176 Sample Accession: GSM2907258 ID: 302907258 12882. ChIPseq-GRKO-GFP-GRtetra_abGFP_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523175 Sample Accession: GSM2907257 ID: 302907257 12883. ChIPseq-GRKO-GFP-GRtetra_abGFP_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523174 Sample Accession: GSM2907256 ID: 302907256 12884. ChIPseq-GRKO-GFP-GRwt_abSMARCA4_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, SMARCA4 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523159 Sample Accession: GSM2907241 ID: 302907241 12885. ChIPseq-GRKO-GFP-GRwt_abSMARCA4_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, SMARCA4 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523158 Sample Accession: GSM2907240 ID: 302907240 12886. ChIPseq-GRKO-GFP-GRwt_abH3K4me1_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523157 Sample Accession: GSM2907239 ID: 302907239 12887. ChIPseq-GRKO-GFP-GRwt_abH3K4me1_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523156 Sample Accession: GSM2907238 ID: 302907238 12888. ChIPseq-GRKO-GFP-GRwt_abH3K4me1_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523155 Sample Accession: GSM2907237 ID: 302907237 12889. ChIPseq-GRKO-GFP-GRwt_abH3K4me1_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, H3K4me1 ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523154 Sample Accession: GSM2907236 ID: 302907236 12890. ChIPseq-GRKO-GFP-GRwt_abH3K27ac_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523153 Sample Accession: GSM2907235 ID: 302907235 12891. ChIPseq-GRKO-GFP-GRwt_abH3K27ac_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523152 Sample Accession: GSM2907234 ID: 302907234 12892. ChIPseq-GRKO-GFP-GRwt_abH3K27ac_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907233/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523151 Sample Accession: GSM2907233 ID: 302907233 12893. ChIPseq-GRKO-GFP-GRwt_abH3K27ac_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, H3K27ac ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523150 Sample Accession: GSM2907232 ID: 302907232 12894. ChIPseq-GRKO-GFP-GRwt_abGR_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523149 Sample Accession: GSM2907231 ID: 302907231 12895. ChIPseq-GRKO-GFP-GRwt_abGR_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523148 Sample Accession: GSM2907230 ID: 302907230 12896. ChIPseq-GRKO-GFP-GRwt_abGR_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907229/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523147 Sample Accession: GSM2907229 ID: 302907229 12897. ChIPseq-GRKO-GFP-GRwt_abGR_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907228/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523146 Sample Accession: GSM2907228 ID: 302907228 12898. ChIPseq-GRKO-GFP-GRwt_abGFP_DEX_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907227/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523145 Sample Accession: GSM2907227 ID: 302907227 12899. ChIPseq-GRKO-GFP-GRwt_abGFP_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907226/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523144 Sample Accession: GSM2907226 ID: 302907226 12900. ChIPseq-GRKO-GFP-GRwt_abGFP_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907225/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523143 Sample Accession: GSM2907225 ID: 302907225 12901. ChIPseq-GRKO-GFP-GRwt_abGFP_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907224/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523142 Sample Accession: GSM2907224 ID: 302907224 12902. ChIPseq-GRKO_abGR_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, Dex-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523141 Sample Accession: GSM2907223 ID: 302907223 12903. ChIPseq-GRKO_abGR_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, Dex-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523140 Sample Accession: GSM2907222 ID: 302907222 12904. ChIPseq-GRKO_abGR_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, non-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523139 Sample Accession: GSM2907221 ID: 302907221 12905. ChIPseq-GRKO_abGR_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, non-treated, GR ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523138 Sample Accession: GSM2907220 ID: 302907220 12906. ChIPseq-GRKO_abGFP_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523137 Sample Accession: GSM2907219 ID: 302907219 12907. ChIPseq-GRKO_abGFP_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, Dex-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523136 Sample Accession: GSM2907218 ID: 302907218 12908. ChIPseq-GRKO_abGFP_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, non-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523135 Sample Accession: GSM2907217 ID: 302907217 12909. ChIPseq-GRKO_abGFP_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, non-treated, GFP ChIP Platform: GPL19057 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523134 Sample Accession: GSM2907216 ID: 302907216 12910. RNAseq-GRKO-GFP-GRtetra_NT_rep5 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5604701 Sample Accession: GSM3692986 ID: 303692986 12911. RNAseq-GRKO-GFP-GRtetra_NT_rep4 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5604704 Sample Accession: GSM3692985 ID: 303692985 12912. RNAseq-GRKO-GFP-GRwt_NT_rep4 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5604703 Sample Accession: GSM3692984 ID: 303692984 12913. RNAseq-GRKO-GFP-GRwt_NT_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3692nnn/GSM3692983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5604702 Sample Accession: GSM3692983 ID: 303692983 12914. RNAseq-GRKO_DEX_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747949 Sample Accession: GSM3025260 ID: 303025260 12915. RNAseq-GRKO_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747948 Sample Accession: GSM3025259 ID: 303025259 12916. RNAseq-GRKO_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747947 Sample Accession: GSM3025258 ID: 303025258 12917. RNAseq-GRKO_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747946 Sample Accession: GSM3025257 ID: 303025257 12918. RNAseq-GRKO_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747945 Sample Accession: GSM3025256 ID: 303025256 12919. RNAseq-parental_DEX_rep3 Organism: Mus musculus Source name: 3617 parental cells, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747944 Sample Accession: GSM3025255 ID: 303025255 12920. RNAseq-parental_DEX_rep2 Organism: Mus musculus Source name: 3617 parental cells, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747943 Sample Accession: GSM3025254 ID: 303025254 12921. RNAseq-parental_DEX_rep1 Organism: Mus musculus Source name: 3617 parental cells, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747942 Sample Accession: GSM3025253 ID: 303025253 12922. RNAseq-parental_NT_rep2 Organism: Mus musculus Source name: 3617 parental cells, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747941 Sample Accession: GSM3025252 ID: 303025252 12923. RNAseq-parental_NT_rep1 Organism: Mus musculus Source name: 3617 parental cells, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3025nnn/GSM3025251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3747940 Sample Accession: GSM3025251 ID: 303025251 12924. RNAseq-GRKO-GFP-GRtetra_DEX_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523230 Sample Accession: GSM2907312 ID: 302907312 12925. RNAseq-GRKO-GFP-GRtetra_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523229 Sample Accession: GSM2907311 ID: 302907311 12926. RNAseq-GRKO-GFP-GRtetra_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523228 Sample Accession: GSM2907310 ID: 302907310 12927. RNAseq-GRKO-GFP-GRtetra_NT_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523227 Sample Accession: GSM2907309 ID: 302907309 12928. RNAseq-GRKO-GFP-GRtetra_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523226 Sample Accession: GSM2907308 ID: 302907308 12929. RNAseq-GRKO-GFP-GRtetra_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523225 Sample Accession: GSM2907307 ID: 302907307 12930. RNAseq-GRKO-GFP-GRwt_DEX_rep3 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523218 Sample Accession: GSM2907300 ID: 302907300 12931. RNAseq-GRKO-GFP-GRwt_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523217 Sample Accession: GSM2907299 ID: 302907299 12932. RNAseq-GRKO-GFP-GRwt_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523216 Sample Accession: GSM2907298 ID: 302907298 12933. RNAseq-GRKO-GFP-GRwt_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523215 Sample Accession: GSM2907297 ID: 302907297 12934. RNAseq-GRKO-GFP-GRwt_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, RNA Platform: GPL17021 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523214 Sample Accession: GSM2907296 ID: 302907296 12935. GFP-_rep3 Organism: Arabidopsis thaliana Source name: GFP-, inflorescence meristem Platform: GPL21785 Series: GSE116972 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3265nnn/GSM3265773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4382145 Sample Accession: GSM3265773 ID: 303265773 12936. GFP-_rep2 Organism: Arabidopsis thaliana Source name: GFP-, inflorescence meristem Platform: GPL21785 Series: GSE116972 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3265nnn/GSM3265772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4382144 Sample Accession: GSM3265772 ID: 303265772 12937. GFP-_rep1 Organism: Arabidopsis thaliana Source name: GFP-, inflorescence meristem Platform: GPL21785 Series: GSE116972 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3265nnn/GSM3265771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4382143 Sample Accession: GSM3265771 ID: 303265771 12938. GFP+_rep3 Organism: Arabidopsis thaliana Source name: GFP+, inflorescence meristem Platform: GPL21785 Series: GSE116972 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3265nnn/GSM3265770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4382142 Sample Accession: GSM3265770 ID: 303265770 12939. GFP+_rep2 Organism: Arabidopsis thaliana Source name: GFP+, inflorescence meristem Platform: GPL21785 Series: GSE116972 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3265nnn/GSM3265769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4382141 Sample Accession: GSM3265769 ID: 303265769 12940. GFP+_rep1 Organism: Arabidopsis thaliana Source name: GFP+, inflorescence meristem Platform: GPL21785 Series: GSE116972 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3265nnn/GSM3265768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4382140 Sample Accession: GSM3265768 ID: 303265768 12941. ATACseq-GRKO-GFP-GRtetra_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, ATAC Platform: GPL21103 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523213 Sample Accession: GSM2907295 ID: 302907295 12942. ATACseq-GRKO-GFP-GRtetra_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, Dex-treated, ATAC Platform: GPL21103 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523212 Sample Accession: GSM2907294 ID: 302907294 12943. ATACseq-GRKO-GFP-GRtetra_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, ATAC Platform: GPL21103 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523211 Sample Accession: GSM2907293 ID: 302907293 12944. ATACseq-GRKO-GFP-GRtetra_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated P481R GFP-GRtetra, non-treated, ATAC Platform: GPL21103 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523210 Sample Accession: GSM2907292 ID: 302907292 12945. ATACseq-GRKO-GFP-GRwt_DEX_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, ATAC Platform: GPL21103 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523205 Sample Accession: GSM2907287 ID: 302907287 12946. ATACseq-GRKO-GFP-GRwt_DEX_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, Dex-treated, ATAC Platform: GPL21103 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523204 Sample Accession: GSM2907286 ID: 302907286 12947. ATACseq-GRKO-GFP-GRwt_NT_rep2 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, ATAC Platform: GPL21103 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523203 Sample Accession: GSM2907285 ID: 302907285 12948. ATACseq-GRKO-GFP-GRwt_NT_rep1 Organism: Mus musculus Source name: 3617-KOGR cells, stably integrated wild-type GFP-GR, non-treated, ATAC Platform: GPL21103 Series: GSE108634 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2907nnn/GSM2907284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3523202 Sample Accession: GSM2907284 ID: 302907284 12949. GM20390 (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608491 Sample Accession: GSM3693111 ID: 303693111 12950. KLC (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608490 Sample Accession: GSM3693110 ID: 303693110 12951. MV4-11 (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608489 Sample Accession: GSM3693109 ID: 303693109 12952. MOLM-13 (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608488 Sample Accession: GSM3693108 ID: 303693108 12953. K-562 (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608487 Sample Accession: GSM3693107 ID: 303693107 12954. CCRF-CEM (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693106/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608486 Sample Accession: GSM3693106 ID: 303693106 12955. RPMI-8402 (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608485 Sample Accession: GSM3693105 ID: 303693105 12956. MOLT-4 (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608484 Sample Accession: GSM3693104 ID: 303693104 12957. JURKAT (ATAC-seq) Organism: Homo sapiens Source name: blood derived tumor cells Platform: GPL18573 Series: GSE129086 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3693nnn/GSM3693103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5608483 Sample Accession: GSM3693103 ID: 303693103 12958. human Fetal RPE ATAC-seq Organism: Homo sapiens Source name: fetal RPE Platform: GPL20301 Series: GSE126847 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3615nnn/GSM3615292/ Sample Accession: GSM3615292 ID: 303615292 12959. iPSC-RPE RPE003 ATAC-seq Organism: Homo sapiens Source name: iPSC-RPE Platform: GPL20301 Series: GSE126847 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3615nnn/GSM3615289/ Sample Accession: GSM3615289 ID: 303615289 12960. iPSC-RPE RPE008 ATAC-seq Organism: Homo sapiens Source name: iPSC-RPE Platform: GPL20301 Series: GSE126847 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3615nnn/GSM3615288/ Sample Accession: GSM3615288 ID: 303615288 12961. iPSC-RPE RPE006 ATAC-seq Organism: Homo sapiens Source name: iPSC-RPE Platform: GPL20301 Series: GSE126847 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3615nnn/GSM3615287/ Sample Accession: GSM3615287 ID: 303615287 12962. iPSC-RPE RPE001 ATAC-seq Organism: Homo sapiens Source name: iPSC-RPE Platform: GPL20301 Series: GSE126847 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3615nnn/GSM3615286/ Sample Accession: GSM3615286 ID: 303615286 12963. iPSC-RPE RPE005 ATAC-seq Organism: Homo sapiens Source name: iPSC-RPE Platform: GPL20301 Series: GSE126847 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3615nnn/GSM3615285/ Sample Accession: GSM3615285 ID: 303615285 12964. iPSC-RPE RPE007 ATAC-seq Organism: Homo sapiens Source name: iPSC-RPE Platform: GPL20301 Series: GSE126847 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3615nnn/GSM3615284/ Sample Accession: GSM3615284 ID: 303615284 12965. ATAC-seq_Bcat_PosteriorPituitary_GFPpos_R2 Organism: Mus musculus Source name: beta-catenin stabilized GFP-positive sorted cells from posterior pituitary Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968167 Sample Accession: GSM3455694 ID: 303455694 12966. ATAC-seq_Bcat_PosteriorPituitary_GFPpos_R1 Organism: Mus musculus Source name: beta-catenin stabilized GFP-positive sorted cells from posterior pituitary Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968166 Sample Accession: GSM3455693 ID: 303455693 12967. ATAC-seq_WT_PosteriorPituitary_GFPpos_R2 Organism: Mus musculus Source name: Wild-Type GFP-positive sorted cells from posterior pituitary Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968165 Sample Accession: GSM3455692 ID: 303455692 12968. ATAC-seq_WT_PosteriorPituitary_GFPpos_R1 Organism: Mus musculus Source name: Wild-Type GFP-positive sorted cells from posterior pituitary Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968164 Sample Accession: GSM3455691 ID: 303455691 12969. ATAC-seq_Bcat_AnteriorPituitary_GFPpos_R2 Organism: Mus musculus Source name: beta-catenin stabilized GFP-positive sorted cells from anterior pituitary Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968163 Sample Accession: GSM3455690 ID: 303455690 12970. ATAC-seq_Bcat_AnteriorPituitary_GFPpos_R1 Organism: Mus musculus Source name: beta-catenin stabilized GFP-positive sorted cells from anterior pituitary Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968162 Sample Accession: GSM3455689 ID: 303455689 12971. ATAC-seq_WT_AnteriorPituitary_GFPpos_R2 Organism: Mus musculus Source name: Wild-Type GFP-positive sorted cells from anterior pituitary Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968161 Sample Accession: GSM3455688 ID: 303455688 12972. ATAC-seq_WT_AnteriorPituitary_GFPpos_R1 Organism: Mus musculus Source name: Wild-Type GFP-positive sorted cells from anterior pituitary Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968160 Sample Accession: GSM3455687 ID: 303455687 12973. ATAC-seq_Bcat_Cerebellum_GFPpos_R2 Organism: Mus musculus Source name: beta-catenin stabilized GFP-positive sorted cells from cerebellum Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968159 Sample Accession: GSM3455686 ID: 303455686 12974. ATAC-seq_Bcat_Cerebellum_GFPpos_R1 Organism: Mus musculus Source name: beta-catenin stabilized GFP-positive sorted cells from cerebellum Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968158 Sample Accession: GSM3455685 ID: 303455685 12975. ATAC-seq_WT_Cerebellum_GFPpos_R2 Organism: Mus musculus Source name: Wild-Type GFP-positive sorted cells from cerebellum Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968157 Sample Accession: GSM3455684 ID: 303455684 12976. ATAC-seq_WT_Cerebellum_GFPpos_R1 Organism: Mus musculus Source name: Wild-Type GFP-positive sorted cells from cerebellum Platform: GPL19057 Series: GSE122117 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3455nnn/GSM3455683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4968156 Sample Accession: GSM3455683 ID: 303455683 12977. ESC-c ATAC Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3381nnn/GSM3381980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4666103 Sample Accession: GSM3381980 ID: 303381980 12978. ESC-b ATAC Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3381nnn/GSM3381979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4666102 Sample Accession: GSM3381979 ID: 303381979 12979. ESC-a ATAC Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3381nnn/GSM3381978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4666101 Sample Accession: GSM3381978 ID: 303381978 12980. ATAC-seq_JNKi DE Day1-c Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2945nnn/GSM2945825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3592676 Sample Accession: GSM2945825 ID: 302945825 12981. ATAC_seq_JNKi DE Day1-b Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2945nnn/GSM2945824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3592675 Sample Accession: GSM2945824 ID: 302945824 12982. ATAC-seq_JNKi DE Day1-a Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2945nnn/GSM2945823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3592674 Sample Accession: GSM2945823 ID: 302945823 12983. ATAC-seq_Control DE Day1-c Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2945nnn/GSM2945822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3592673 Sample Accession: GSM2945822 ID: 302945822 12984. ATAC-seq_Control DE Day1-b Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2945nnn/GSM2945821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3592672 Sample Accession: GSM2945821 ID: 302945821 12985. ATAC-seq_Control DE Day1-a Organism: Homo sapiens Source name: HUES8 human embryonic stem cells (hESCs) Platform: GPL16791 Series: GSE109524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2945nnn/GSM2945820/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3592671 Sample Accession: GSM2945820 ID: 302945820 12986. ATAC-Seq - NeuN positive/TDP-43 negative S7 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373097 Sample Accession: GSM3603262 ID: 303603262 12987. ATAC-Seq - NeuN positive/TDP-43 positive S7 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373096 Sample Accession: GSM3603261 ID: 303603261 12988. ATAC-Seq - NeuN positive/TDP-43 negative S6 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373095 Sample Accession: GSM3603260 ID: 303603260 12989. ATAC-Seq - NeuN positive/TDP-43 positive S6 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373094 Sample Accession: GSM3603259 ID: 303603259 12990. ATAC-Seq - NeuN positive/TDP-43 negative S5 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373093 Sample Accession: GSM3603258 ID: 303603258 12991. ATAC-Seq - NeuN positive/TDP-43 positive S5 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373092 Sample Accession: GSM3603257 ID: 303603257 12992. ATAC-Seq - NeuN positive/TDP-43 negative S4 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373091 Sample Accession: GSM3603256 ID: 303603256 12993. ATAC-Seq - NeuN positive/TDP-43 positive S4 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373090 Sample Accession: GSM3603255 ID: 303603255 12994. ATAC-Seq - NeuN positive/TDP-43 negative S3 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373089 Sample Accession: GSM3603254 ID: 303603254 12995. ATAC-Seq - NeuN positive/TDP-43 positive S3 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373088 Sample Accession: GSM3603253 ID: 303603253 12996. ATAC-Seq - NeuN positive/TDP-43 negative S2 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373087 Sample Accession: GSM3603252 ID: 303603252 12997. ATAC-Seq - NeuN positive/TDP-43 positive S2 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373086 Sample Accession: GSM3603251 ID: 303603251 12998. ATAC-Seq - NeuN positive/TDP-43 negative S1 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373085 Sample Accession: GSM3603250 ID: 303603250 12999. ATAC-Seq - NeuN positive/TDP-43 positive S1 Organism: Homo sapiens Source name: Nuclei Platform: GPL16791 Series: GSE126541 GSE126543 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5373084 Sample Accession: GSM3603249 ID: 303603249 13000. BIN67_K785R_ATAC-Seq_Rep1 Organism: Homo sapiens Source name: BIN-67 (SCCOHT) Platform: GPL18573 Series: GSE117301 GSE117735 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4404388 Sample Accession: GSM3290742 ID: 303290742 13001. BIN67_SMARCA4_ATAC-Seq_Rep2 Organism: Homo sapiens Source name: BIN-67 (SCCOHT) Platform: GPL18573 Series: GSE117301 GSE117735 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4404387 Sample Accession: GSM3290741 ID: 303290741 13002. BIN67_SMARCA2_ATAC-Seq_Rep2 Organism: Homo sapiens Source name: BIN-67 (SCCOHT) Platform: GPL18573 Series: GSE117301 GSE117735 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4404386 Sample Accession: GSM3290740 ID: 303290740 13003. BIN67_Control_ATAC-Seq_Rep2 Organism: Homo sapiens Source name: BIN-67 (SCCOHT) Platform: GPL18573 Series: GSE117301 GSE117735 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4404385 Sample Accession: GSM3290739 ID: 303290739 13004. BIN67_T910M_ATAC-Seq_Rep1 Organism: Homo sapiens Source name: BIN-67 (SCCOHT) Platform: GPL18573 Series: GSE117301 GSE117735 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4404384 Sample Accession: GSM3290738 ID: 303290738 13005. BIN67_SMARCA2_ATAC-Seq_Rep1 Organism: Homo sapiens Source name: BIN-67 (SCCOHT) Platform: GPL18573 Series: GSE117301 GSE117735 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4404383 Sample Accession: GSM3290737 ID: 303290737 13006. BIN67_SMARCA4_ATAC-Seq_Rep1 Organism: Homo sapiens Source name: BIN-67 (SCCOHT) Platform: GPL18573 Series: GSE117301 GSE117735 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4404382 Sample Accession: GSM3290736 ID: 303290736 13007. BIN67_Control_ATAC-Seq_Rep1 Organism: Homo sapiens Source name: BIN-67 (SCCOHT) Platform: GPL18573 Series: GSE117301 GSE117735 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4404381 Sample Accession: GSM3290735 ID: 303290735 13008. ATAC-seq for MLLT3 in 4 wk cultured FL-HSPC with MLLT3-OEvector Organism: Homo sapiens Source name: human FL CD34+CD38-/lowCD90+GFP+ Platform: GPL16791 Series: GSE111480 GSE111484 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3032nnn/GSM3032070/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3768710 Sample Accession: GSM3032070 ID: 303032070 13009. ATAC-seq for MLLT3 in 4 wk cultured FL-HSPC with CTR vector Organism: Homo sapiens Source name: human FL CD34+CD38-/lowCD90+GFP+ Platform: GPL16791 Series: GSE111480 GSE111484 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3032nnn/GSM3032069/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3768709 Sample Accession: GSM3032069 ID: 303032069 13010. ATAC-seq for MLLT3 in FL-Erythroblasts, sample2 Organism: Homo sapiens Source name: human FL CD34-CD71+CD235a+ Platform: GPL16791 Series: GSE111480 GSE111484 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3032nnn/GSM3032068/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3768708 Sample Accession: GSM3032068 ID: 303032068 13011. ATAC-seq for MLLT3 in FL-Erythroblasts, sample1 Organism: Homo sapiens Source name: human FL CD34-CD71+CD235a+ Platform: GPL16791 Series: GSE111480 GSE111484 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3032nnn/GSM3032067/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3768707 Sample Accession: GSM3032067 ID: 303032067 13012. ATAC-seq for MLLT3 in FL-HSPC, sample3 Organism: Homo sapiens Source name: human FL CD34+CD38-/lowCD90+ Platform: GPL16791 Series: GSE111480 GSE111484 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3032nnn/GSM3032066/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3768706 Sample Accession: GSM3032066 ID: 303032066 13013. ATAC-seq for MLLT3 in FL-HSPC, sample2 Organism: Homo sapiens Source name: human FL CD34+CD38-/lowCD90+ Platform: GPL16791 Series: GSE111480 GSE111484 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3032nnn/GSM3032065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3768705 Sample Accession: GSM3032065 ID: 303032065 13014. ATAC-seq for MLLT3 in FL-HSPC, sample1 Organism: Homo sapiens Source name: human FL CD34+CD38-/lowCD90+ Platform: GPL16791 Series: GSE111480 GSE111484 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3032nnn/GSM3032064/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3768704 Sample Accession: GSM3032064 ID: 303032064 13015. SRF delta/delta iPSC ATAC-seq rep2 Organism: Mus musculus Source name: SRF delta/delta iPSC Platform: GPL17021 Series: GSE120399 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3399nnn/GSM3399955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4735824 Sample Accession: GSM3399955 ID: 303399955 13016. SRF delta/delta iPSC ATAC-seq rep1 Organism: Mus musculus Source name: SRF delta/delta iPSC Platform: GPL17021 Series: GSE120399 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3399nnn/GSM3399954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4735823 Sample Accession: GSM3399954 ID: 303399954 13017. SRF f/f iPSC ATAC-seq rep2 Organism: Mus musculus Source name: SRF f/f iPSC Platform: GPL17021 Series: GSE120399 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3399nnn/GSM3399953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4735822 Sample Accession: GSM3399953 ID: 303399953 13018. SRF f/f iPSC ATAC-seq rep1 Organism: Mus musculus Source name: SRF f/f iPSC Platform: GPL17021 Series: GSE120399 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3399nnn/GSM3399952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4735821 Sample Accession: GSM3399952 ID: 303399952 13019. caMKL1 mESC ATAC-seq rep2 Organism: Mus musculus Source name: caMKL1 mESC Platform: GPL17021 Series: GSE120399 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3399nnn/GSM3399951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4735820 Sample Accession: GSM3399951 ID: 303399951 13020. caMKL1 mESC ATAC-seq rep1 Organism: Mus musculus Source name: caMKL1 mESC Platform: GPL17021 Series: GSE120399 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3399nnn/GSM3399950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4735819 Sample Accession: GSM3399950 ID: 303399950 13021. WT mESC ATAC-seq rep2 Organism: Mus musculus Source name: WT mESC Platform: GPL17021 Series: GSE120399 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3399nnn/GSM3399949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4735818 Sample Accession: GSM3399949 ID: 303399949 13022. WT mESC ATAC-seq rep1 Organism: Mus musculus Source name: WT mESC Platform: GPL17021 Series: GSE120399 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3399nnn/GSM3399948/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4735817 Sample Accession: GSM3399948 ID: 303399948 13023. ATACseq in EB replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053985 Sample Accession: GSM3136827 ID: 303136827 13024. ATACseq in EB replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053984 Sample Accession: GSM3136826 ID: 303136826 13025. ATACseq in EB+48hrDox(iAscl1[bHLH:Ngn2].HA) replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053983 Sample Accession: GSM3136825 ID: 303136825 13026. ATACseq in EB+48hrDox(iAscl1[bHLH:Ngn2].HA) replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053982 Sample Accession: GSM3136824 ID: 303136824 13027. ATACseq in EB+48hrDox(iFlag.Ngn2) replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053981 Sample Accession: GSM3136823 ID: 303136823 13028. ATACseq in EB+48hrDox(iFlag.Ngn2) replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053980 Sample Accession: GSM3136822 ID: 303136822 13029. ATACseq in EB+48hrDox(iAscl1.V5) replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053979 Sample Accession: GSM3136821 ID: 303136821 13030. ATACseq in EB+48hrDox(iAscl1.V5) replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053978 Sample Accession: GSM3136820 ID: 303136820 13031. ATACseq in EB+12hrDox(iAscl1[bHLH:Ngn2].HA) replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053977 Sample Accession: GSM3136819 ID: 303136819 13032. ATACseq in EB+12hrDox(iAscl1[bHLH:Ngn2].HA) replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053976 Sample Accession: GSM3136818 ID: 303136818 13033. ATACseq in EB+12hrDox(iFlag.Ngn2) replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053975 Sample Accession: GSM3136817 ID: 303136817 13034. ATACseq in EB+12hrDox(iFlag.Ngn2) replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053974 Sample Accession: GSM3136816 ID: 303136816 13035. ATACseq in EB+12hrDox(iAscl1.V5) replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053973 Sample Accession: GSM3136815 ID: 303136815 13036. ATACseq in EB+12hrDox(iAscl1.V5) replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE114171 GSE114176 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4053972 Sample Accession: GSM3136814 ID: 303136814 13037. ATACseq_serum_Pax3_rep3 Organism: Mus musculus Source name: differentiating mES cells Platform: GPL17021 Series: GSE125203 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3629nnn/GSM3629707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5431011 Sample Accession: GSM3629707 ID: 303629707 13038. ATACseq_serum_ctrl_rep3 Organism: Mus musculus Source name: differentiating mES cells Platform: GPL17021 Series: GSE125203 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3629nnn/GSM3629706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5431010 Sample Accession: GSM3629706 ID: 303629706 13039. ATAC-seq on PBMCs from patient CLL8 on day 3 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734628 Sample Accession: GSM3020392 ID: 303020392 13040. ATAC-seq on PBMCs from patient CLL8 on day 0 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734627 Sample Accession: GSM3020391 ID: 303020391 13041. ATAC-seq on PBMCs from patient CLL8 on day 3 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734626 Sample Accession: GSM3020390 ID: 303020390 13042. ATAC-seq on PBMCs from patient CLL8 on day 0 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734625 Sample Accession: GSM3020389 ID: 303020389 13043. ATAC-seq on PBMCs from patient CLL8 on day 030 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020388/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734624 Sample Accession: GSM3020388 ID: 303020388 13044. ATAC-seq on PBMCs from patient CLL8 on day 3 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020387/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734623 Sample Accession: GSM3020387 ID: 303020387 13045. ATAC-seq on PBMCs from patient CLL8 on day 0 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734622 Sample Accession: GSM3020386 ID: 303020386 13046. ATAC-seq on PBMCs from patient CLL8 on day 030 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734621 Sample Accession: GSM3020385 ID: 303020385 13047. ATAC-seq on PBMCs from patient CLL8 on day 3 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734620 Sample Accession: GSM3020384 ID: 303020384 13048. ATAC-seq on PBMCs from patient CLL8 on day 0 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734619 Sample Accession: GSM3020383 ID: 303020383 13049. ATAC-seq on PBMCs from patient CLL8 on day 3 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734618 Sample Accession: GSM3020382 ID: 303020382 13050. ATAC-seq on PBMCs from patient CLL8 on day 0 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734617 Sample Accession: GSM3020381 ID: 303020381 13051. ATAC-seq on PBMCs from patient CLL7 on day 150 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734616 Sample Accession: GSM3020380 ID: 303020380 13052. ATAC-seq on PBMCs from patient CLL7 on day 30 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734615 Sample Accession: GSM3020379 ID: 303020379 13053. ATAC-seq on PBMCs from patient CLL7 on day 0 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734614 Sample Accession: GSM3020378 ID: 303020378 13054. ATAC-seq on PBMCs from patient CLL7 on day 150 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734613 Sample Accession: GSM3020377 ID: 303020377 13055. ATAC-seq on PBMCs from patient CLL7 on day 30 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734612 Sample Accession: GSM3020376 ID: 303020376 13056. ATAC-seq on PBMCs from patient CLL7 on day 8 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734611 Sample Accession: GSM3020375 ID: 303020375 13057. ATAC-seq on PBMCs from patient CLL7 on day 3 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734610 Sample Accession: GSM3020374 ID: 303020374 13058. ATAC-seq on PBMCs from patient CLL7 on day 1 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734609 Sample Accession: GSM3020373 ID: 303020373 13059. ATAC-seq on PBMCs from patient CLL7 on day 0 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734608 Sample Accession: GSM3020372 ID: 303020372 13060. ATAC-seq on PBMCs from patient CLL7 on day 150 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734607 Sample Accession: GSM3020371 ID: 303020371 13061. ATAC-seq on PBMCs from patient CLL7 on day 30 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020370/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734606 Sample Accession: GSM3020370 ID: 303020370 13062. ATAC-seq on PBMCs from patient CLL7 on day 8 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020369/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734605 Sample Accession: GSM3020369 ID: 303020369 13063. ATAC-seq on PBMCs from patient CLL7 on day 3 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020368/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734604 Sample Accession: GSM3020368 ID: 303020368 13064. ATAC-seq on PBMCs from patient CLL7 on day 1 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734603 Sample Accession: GSM3020367 ID: 303020367 13065. ATAC-seq on PBMCs from patient CLL7 on day 0 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734602 Sample Accession: GSM3020366 ID: 303020366 13066. ATAC-seq on PBMCs from patient CLL7 on day 150 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734601 Sample Accession: GSM3020365 ID: 303020365 13067. ATAC-seq on PBMCs from patient CLL7 on day 30 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734600 Sample Accession: GSM3020364 ID: 303020364 13068. ATAC-seq on PBMCs from patient CLL7 on day 8 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020363/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734599 Sample Accession: GSM3020363 ID: 303020363 13069. ATAC-seq on PBMCs from patient CLL7 on day 3 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020362/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734598 Sample Accession: GSM3020362 ID: 303020362 13070. ATAC-seq on PBMCs from patient CLL7 on day 1 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020361/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734597 Sample Accession: GSM3020361 ID: 303020361 13071. ATAC-seq on PBMCs from patient CLL7 on day 0 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020360/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734596 Sample Accession: GSM3020360 ID: 303020360 13072. ATAC-seq on PBMCs from patient CLL7 on day 150 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734595 Sample Accession: GSM3020359 ID: 303020359 13073. ATAC-seq on PBMCs from patient CLL7 on day 3 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734594 Sample Accession: GSM3020358 ID: 303020358 13074. ATAC-seq on PBMCs from patient CLL7 on day 0 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020357/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734593 Sample Accession: GSM3020357 ID: 303020357 13075. ATAC-seq on PBMCs from patient CLL6 on day 280 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 280 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020356/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734592 Sample Accession: GSM3020356 ID: 303020356 13076. ATAC-seq on PBMCs from patient CLL6 on day 030 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020355/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734591 Sample Accession: GSM3020355 ID: 303020355 13077. ATAC-seq on PBMCs from patient CLL6 on day 280 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 280 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020354/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734590 Sample Accession: GSM3020354 ID: 303020354 13078. ATAC-seq on PBMCs from patient CLL6 on day 120 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020353/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734589 Sample Accession: GSM3020353 ID: 303020353 13079. ATAC-seq on PBMCs from patient CLL6 on day 030 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020352/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734588 Sample Accession: GSM3020352 ID: 303020352 13080. ATAC-seq on PBMCs from patient CLL6 on day 0 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734587 Sample Accession: GSM3020351 ID: 303020351 13081. ATAC-seq on PBMCs from patient CLL6 on day 280 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 280 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734586 Sample Accession: GSM3020350 ID: 303020350 13082. ATAC-seq on PBMCs from patient CLL6 on day 120 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020349/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734585 Sample Accession: GSM3020349 ID: 303020349 13083. ATAC-seq on PBMCs from patient CLL6 on day 030 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734584 Sample Accession: GSM3020348 ID: 303020348 13084. ATAC-seq on PBMCs from patient CLL6 on day 0 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020347/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734583 Sample Accession: GSM3020347 ID: 303020347 13085. ATAC-seq on PBMCs from patient CLL6 on day 280 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 280 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734582 Sample Accession: GSM3020346 ID: 303020346 13086. ATAC-seq on PBMCs from patient CLL6 on day 120 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734581 Sample Accession: GSM3020345 ID: 303020345 13087. ATAC-seq on PBMCs from patient CLL6 on day 030 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734580 Sample Accession: GSM3020344 ID: 303020344 13088. ATAC-seq on PBMCs from patient CLL6 on day 0 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734579 Sample Accession: GSM3020343 ID: 303020343 13089. ATAC-seq on PBMCs from patient CLL6 on day 280 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 280 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020342/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734578 Sample Accession: GSM3020342 ID: 303020342 13090. ATAC-seq on PBMCs from patient CLL6 on day 120 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020341/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734577 Sample Accession: GSM3020341 ID: 303020341 13091. ATAC-seq on PBMCs from patient CLL6 on day 030 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734576 Sample Accession: GSM3020340 ID: 303020340 13092. ATAC-seq on PBMCs from patient CLL6 on day 280 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 280 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734575 Sample Accession: GSM3020339 ID: 303020339 13093. ATAC-seq on PBMCs from patient CLL6 on day 120 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734574 Sample Accession: GSM3020338 ID: 303020338 13094. ATAC-seq on PBMCs from patient CLL5 on day 30 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734573 Sample Accession: GSM3020337 ID: 303020337 13095. ATAC-seq on PBMCs from patient CLL5 on day 030 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734572 Sample Accession: GSM3020336 ID: 303020336 13096. ATAC-seq on PBMCs from patient CLL5 on day 8 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734571 Sample Accession: GSM3020335 ID: 303020335 13097. ATAC-seq on PBMCs from patient CLL5 on day 3 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020334/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734570 Sample Accession: GSM3020334 ID: 303020334 13098. ATAC-seq on PBMCs from patient CLL5 on day 1 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020333/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734569 Sample Accession: GSM3020333 ID: 303020333 13099. ATAC-seq on PBMCs from patient CLL5 on day 0 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734568 Sample Accession: GSM3020332 ID: 303020332 13100. ATAC-seq on PBMCs from patient CLL5 on day 150 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020331/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734567 Sample Accession: GSM3020331 ID: 303020331 13101. ATAC-seq on PBMCs from patient CLL5 on day 8 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734566 Sample Accession: GSM3020330 ID: 303020330 13102. ATAC-seq on PBMCs from patient CLL5 on day 3 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734565 Sample Accession: GSM3020329 ID: 303020329 13103. ATAC-seq on PBMCs from patient CLL5 on day 1 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734564 Sample Accession: GSM3020328 ID: 303020328 13104. ATAC-seq on PBMCs from patient CLL5 on day 0 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734563 Sample Accession: GSM3020327 ID: 303020327 13105. ATAC-seq on PBMCs from patient CLL5 on day 240 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 240 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734562 Sample Accession: GSM3020326 ID: 303020326 13106. ATAC-seq on PBMCs from patient CLL5 on day 150 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020325/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734561 Sample Accession: GSM3020325 ID: 303020325 13107. ATAC-seq on PBMCs from patient CLL5 on day 30 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020324/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734560 Sample Accession: GSM3020324 ID: 303020324 13108. ATAC-seq on PBMCs from patient CLL5 on day 8 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020323/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734559 Sample Accession: GSM3020323 ID: 303020323 13109. ATAC-seq on PBMCs from patient CLL5 on day 3 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734558 Sample Accession: GSM3020322 ID: 303020322 13110. ATAC-seq on PBMCs from patient CLL5 on day 2 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 2 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734557 Sample Accession: GSM3020321 ID: 303020321 13111. ATAC-seq on PBMCs from patient CLL5 on day 1 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734556 Sample Accession: GSM3020320 ID: 303020320 13112. ATAC-seq on PBMCs from patient CLL5 on day 0 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734555 Sample Accession: GSM3020319 ID: 303020319 13113. ATAC-seq on PBMCs from patient CLL5 on day 240 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 240 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734554 Sample Accession: GSM3020318 ID: 303020318 13114. ATAC-seq on PBMCs from patient CLL5 on day 150 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734553 Sample Accession: GSM3020317 ID: 303020317 13115. ATAC-seq on PBMCs from patient CLL5 on day 30 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734552 Sample Accession: GSM3020316 ID: 303020316 13116. ATAC-seq on PBMCs from patient CLL5 on day 8 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734551 Sample Accession: GSM3020315 ID: 303020315 13117. ATAC-seq on PBMCs from patient CLL5 on day 3 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734550 Sample Accession: GSM3020314 ID: 303020314 13118. ATAC-seq on PBMCs from patient CLL5 on day 2 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 2 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734549 Sample Accession: GSM3020313 ID: 303020313 13119. ATAC-seq on PBMCs from patient CLL5 on day 1 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734548 Sample Accession: GSM3020312 ID: 303020312 13120. ATAC-seq on PBMCs from patient CLL5 on day 0 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734547 Sample Accession: GSM3020311 ID: 303020311 13121. ATAC-seq on PBMCs from patient CLL5 on day 240 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 240 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734546 Sample Accession: GSM3020310 ID: 303020310 13122. ATAC-seq on PBMCs from patient CLL5 on day 150 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734545 Sample Accession: GSM3020309 ID: 303020309 13123. ATAC-seq on PBMCs from patient CLL5 on day 30 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734544 Sample Accession: GSM3020308 ID: 303020308 13124. ATAC-seq on PBMCs from patient CLL5 on day 8 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734543 Sample Accession: GSM3020307 ID: 303020307 13125. ATAC-seq on PBMCs from patient CLL5 on day 3 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734542 Sample Accession: GSM3020306 ID: 303020306 13126. ATAC-seq on PBMCs from patient CLL5 on day 2 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 2 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734541 Sample Accession: GSM3020305 ID: 303020305 13127. ATAC-seq on PBMCs from patient CLL5 on day 1 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734540 Sample Accession: GSM3020304 ID: 303020304 13128. ATAC-seq on PBMCs from patient CLL5 on day 0 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734539 Sample Accession: GSM3020303 ID: 303020303 13129. ATAC-seq on PBMCs from patient CLL5 on day 150 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734538 Sample Accession: GSM3020302 ID: 303020302 13130. ATAC-seq on PBMCs from patient CLL5 on day 30 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734537 Sample Accession: GSM3020301 ID: 303020301 13131. ATAC-seq on PBMCs from patient CLL5 on day 8 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734536 Sample Accession: GSM3020300 ID: 303020300 13132. ATAC-seq on PBMCs from patient CLL5 on day 3 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734535 Sample Accession: GSM3020299 ID: 303020299 13133. ATAC-seq on PBMCs from patient CLL5 on day 2 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 2 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734534 Sample Accession: GSM3020298 ID: 303020298 13134. ATAC-seq on PBMCs from patient CLL5 on day 1 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 1 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734533 Sample Accession: GSM3020297 ID: 303020297 13135. ATAC-seq on PBMCs from patient CLL5 on day 0 of ibrutinib treatment, Bcells, replicate 2 Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Bcells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734532 Sample Accession: GSM3020296 ID: 303020296 13136. ATAC-seq on PBMCs from patient CLL5 on day 0 of ibrutinib treatment, Bcells, replicate 1 Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Bcells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734531 Sample Accession: GSM3020295 ID: 303020295 13137. ATAC-seq on PBMCs from patient CLL4 on day 3 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734530 Sample Accession: GSM3020294 ID: 303020294 13138. ATAC-seq on PBMCs from patient CLL4 on day 0 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734529 Sample Accession: GSM3020293 ID: 303020293 13139. ATAC-seq on PBMCs from patient CLL4 on day 3 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734528 Sample Accession: GSM3020292 ID: 303020292 13140. ATAC-seq on PBMCs from patient CLL4 on day 0 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734527 Sample Accession: GSM3020291 ID: 303020291 13141. ATAC-seq on PBMCs from patient CLL4 on day 3 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734526 Sample Accession: GSM3020290 ID: 303020290 13142. ATAC-seq on PBMCs from patient CLL4 on day 2 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 2 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734525 Sample Accession: GSM3020289 ID: 303020289 13143. ATAC-seq on PBMCs from patient CLL4 on day 0 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734524 Sample Accession: GSM3020288 ID: 303020288 13144. ATAC-seq on PBMCs from patient CLL4 on day 3 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734523 Sample Accession: GSM3020287 ID: 303020287 13145. ATAC-seq on PBMCs from patient CLL4 on day 0 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734522 Sample Accession: GSM3020286 ID: 303020286 13146. ATAC-seq on PBMCs from patient CLL4 on day 3 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734521 Sample Accession: GSM3020285 ID: 303020285 13147. ATAC-seq on PBMCs from patient CLL4 on day 2 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 2 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734520 Sample Accession: GSM3020284 ID: 303020284 13148. ATAC-seq on PBMCs from patient CLL4 on day 0 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734519 Sample Accession: GSM3020283 ID: 303020283 13149. ATAC-seq on PBMCs from patient CLL4 on day 3 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734518 Sample Accession: GSM3020282 ID: 303020282 13150. ATAC-seq on PBMCs from patient CLL2 on day 150 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 150 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734517 Sample Accession: GSM3020281 ID: 303020281 13151. ATAC-seq on PBMCs from patient CLL2 on day 30 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734516 Sample Accession: GSM3020280 ID: 303020280 13152. ATAC-seq on PBMCs from patient CLL2 on day 8 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734515 Sample Accession: GSM3020279 ID: 303020279 13153. ATAC-seq on PBMCs from patient CLL2 on day 3 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734514 Sample Accession: GSM3020278 ID: 303020278 13154. ATAC-seq on PBMCs from patient CLL2 on day 120 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734513 Sample Accession: GSM3020277 ID: 303020277 13155. ATAC-seq on PBMCs from patient CLL2 on day 3 of ibrutinib treatment, Mono cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Mono cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734512 Sample Accession: GSM3020276 ID: 303020276 13156. ATAC-seq on PBMCs from patient CLL2 on day 120 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734511 Sample Accession: GSM3020275 ID: 303020275 13157. ATAC-seq on PBMCs from patient CLL2 on day 30 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734510 Sample Accession: GSM3020274 ID: 303020274 13158. ATAC-seq on PBMCs from patient CLL2 on day 8 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734509 Sample Accession: GSM3020273 ID: 303020273 13159. ATAC-seq on PBMCs from patient CLL2 on day 3 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734508 Sample Accession: GSM3020272 ID: 303020272 13160. ATAC-seq on PBMCs from patient CLL2 on day 0 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734507 Sample Accession: GSM3020271 ID: 303020271 13161. ATAC-seq on PBMCs from patient CLL2 on day 120 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734506 Sample Accession: GSM3020270 ID: 303020270 13162. ATAC-seq on PBMCs from patient CLL2 on day 30 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734505 Sample Accession: GSM3020269 ID: 303020269 13163. ATAC-seq on PBMCs from patient CLL2 on day 8 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734504 Sample Accession: GSM3020268 ID: 303020268 13164. ATAC-seq on PBMCs from patient CLL2 on day 3 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734503 Sample Accession: GSM3020267 ID: 303020267 13165. ATAC-seq on PBMCs from patient CLL2 on day 0 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734502 Sample Accession: GSM3020266 ID: 303020266 13166. ATAC-seq on PBMCs from patient CLL2 on day 120 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734501 Sample Accession: GSM3020265 ID: 303020265 13167. ATAC-seq on PBMCs from patient CLL2 on day 30 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734500 Sample Accession: GSM3020264 ID: 303020264 13168. ATAC-seq on PBMCs from patient CLL2 on day 8 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 8 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734499 Sample Accession: GSM3020263 ID: 303020263 13169. ATAC-seq on PBMCs from patient CLL2 on day 3 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734498 Sample Accession: GSM3020262 ID: 303020262 13170. ATAC-seq on PBMCs from patient CLL2 on day 0 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734497 Sample Accession: GSM3020261 ID: 303020261 13171. ATAC-seq on PBMCs from patient CLL2 on day 120 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734496 Sample Accession: GSM3020260 ID: 303020260 13172. ATAC-seq on PBMCs from patient CLL2 on day 30 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 30 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734495 Sample Accession: GSM3020259 ID: 303020259 13173. ATAC-seq on PBMCs from patient CLL2 on day 3 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734494 Sample Accession: GSM3020258 ID: 303020258 13174. ATAC-seq on PBMCs from patient CLL2 on day 0 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734493 Sample Accession: GSM3020257 ID: 303020257 13175. ATAC-seq on PBMCs from patient CLL1 on day 120 of ibrutinib treatment, NK cells, replicate 2 Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734492 Sample Accession: GSM3020256 ID: 303020256 13176. ATAC-seq on PBMCs from patient CLL1 on day 120 of ibrutinib treatment, NK cells, replicate 1 Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734491 Sample Accession: GSM3020255 ID: 303020255 13177. ATAC-seq on PBMCs from patient CLL1 on day 3 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734490 Sample Accession: GSM3020254 ID: 303020254 13178. ATAC-seq on PBMCs from patient CLL1 on day 0 of ibrutinib treatment, NK cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_NK cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734489 Sample Accession: GSM3020253 ID: 303020253 13179. ATAC-seq on PBMCs from patient CLL1 on day 120 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734488 Sample Accession: GSM3020252 ID: 303020252 13180. ATAC-seq on PBMCs from patient CLL1 on day 030 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734487 Sample Accession: GSM3020251 ID: 303020251 13181. ATAC-seq on PBMCs from patient CLL1 on day 3 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734486 Sample Accession: GSM3020250 ID: 303020250 13182. ATAC-seq on PBMCs from patient CLL1 on day 0 of ibrutinib treatment, CLL cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CLL cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734485 Sample Accession: GSM3020249 ID: 303020249 13183. ATAC-seq on PBMCs from patient CLL1 on day 120 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734484 Sample Accession: GSM3020248 ID: 303020248 13184. ATAC-seq on PBMCs from patient CLL1 on day 030 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 030 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734483 Sample Accession: GSM3020247 ID: 303020247 13185. ATAC-seq on PBMCs from patient CLL1 on day 3 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734482 Sample Accession: GSM3020246 ID: 303020246 13186. ATAC-seq on PBMCs from patient CLL1 on day 0 of ibrutinib treatment, CD8 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD8 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734481 Sample Accession: GSM3020245 ID: 303020245 13187. ATAC-seq on PBMCs from patient CLL1 on day 120 of ibrutinib treatment, CD4 cells, replicate 2 Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734480 Sample Accession: GSM3020244 ID: 303020244 13188. ATAC-seq on PBMCs from patient CLL1 on day 120 of ibrutinib treatment, CD4 cells, replicate 1 Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734479 Sample Accession: GSM3020243 ID: 303020243 13189. ATAC-seq on PBMCs from patient CLL1 on day 3 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734478 Sample Accession: GSM3020242 ID: 303020242 13190. ATAC-seq on PBMCs from patient CLL1 on day 0 of ibrutinib treatment, CD4 cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_CD4 cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734477 Sample Accession: GSM3020241 ID: 303020241 13191. ATAC-seq on PBMCs from patient CLL1 on day 120 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 120 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734476 Sample Accession: GSM3020240 ID: 303020240 13192. ATAC-seq on PBMCs from patient CLL1 on day 3 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 3 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734475 Sample Accession: GSM3020239 ID: 303020239 13193. ATAC-seq on PBMCs from patient CLL1 on day 0 of ibrutinib treatment, Bcell cells Organism: Homo sapiens Source name: PBMCs_CLL patient_day 0 of ibrutinib treatment_Bcell cells Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734474 Sample Accession: GSM3020238 ID: 303020238 13194. ATAC-seq on PBMCs from donor ND-3, UnswitchedBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_UnswitchedBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734473 Sample Accession: GSM3020237 ID: 303020237 13195. ATAC-seq on PBMCs from donor ND-2, UnswitchedBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_UnswitchedBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734472 Sample Accession: GSM3020236 ID: 303020236 13196. ATAC-seq on PBMCs from donor ND-1, UnswitchedBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_UnswitchedBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734471 Sample Accession: GSM3020235 ID: 303020235 13197. ATAC-seq on PBMCs from donor ND-3, Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734470 Sample Accession: GSM3020234 ID: 303020234 13198. ATAC-seq on PBMCs from donor ND-2, Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020233/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734469 Sample Accession: GSM3020233 ID: 303020233 13199. ATAC-seq on PBMCs from donor ND-1, Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734468 Sample Accession: GSM3020232 ID: 303020232 13200. ATAC-seq on PBMCs from donor ND-3, SwitchedBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_SwitchedBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734467 Sample Accession: GSM3020231 ID: 303020231 13201. ATAC-seq on PBMCs from donor ND-2, SwitchedBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_SwitchedBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734466 Sample Accession: GSM3020230 ID: 303020230 13202. ATAC-seq on PBMCs from donor ND-1, SwitchedBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_SwitchedBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020229/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734465 Sample Accession: GSM3020229 ID: 303020229 13203. ATAC-seq on PBMCs from donor ND-3, NaiveBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_NaiveBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020228/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734464 Sample Accession: GSM3020228 ID: 303020228 13204. ATAC-seq on PBMCs from donor ND-2, NaiveBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_NaiveBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020227/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734463 Sample Accession: GSM3020227 ID: 303020227 13205. ATAC-seq on PBMCs from donor ND-1, NaiveBcell Organism: Homo sapiens Source name: PBMCs_healthy donor_NaiveBcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020226/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734462 Sample Accession: GSM3020226 ID: 303020226 13206. ATAC-seq on PBMCs from donor ND-3, CD8Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_CD8Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020225/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734461 Sample Accession: GSM3020225 ID: 303020225 13207. ATAC-seq on PBMCs from donor ND-2, CD8Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_CD8Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020224/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734460 Sample Accession: GSM3020224 ID: 303020224 13208. ATAC-seq on PBMCs from donor ND-1, CD8Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_CD8Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734459 Sample Accession: GSM3020223 ID: 303020223 13209. ATAC-seq on PBMCs from donor ND-3, CD4Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_CD4Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734458 Sample Accession: GSM3020222 ID: 303020222 13210. ATAC-seq on PBMCs from donor ND-2, CD4Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_CD4Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734457 Sample Accession: GSM3020221 ID: 303020221 13211. ATAC-seq on PBMCs from donor ND-1, CD4Tcell Organism: Homo sapiens Source name: PBMCs_healthy donor_CD4Tcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734456 Sample Accession: GSM3020220 ID: 303020220 13212. ATAC-seq on PBMCs from donor ND-3, Bcell Organism: Homo sapiens Source name: PBMCs_healthy donor_Bcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734455 Sample Accession: GSM3020219 ID: 303020219 13213. ATAC-seq on PBMCs from donor ND-2, Bcell Organism: Homo sapiens Source name: PBMCs_healthy donor_Bcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734454 Sample Accession: GSM3020218 ID: 303020218 13214. ATAC-seq on PBMCs from donor ND-1, Bcell Organism: Homo sapiens Source name: PBMCs_healthy donor_Bcell Platform: GPL20301 Series: GSE111013 GSE111015 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3020nnn/GSM3020217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3734453 Sample Accession: GSM3020217 ID: 303020217 13215. ATAC-seq mouse E16.5 Cdx2-KO rep2 Organism: Mus musculus Source name: Mouse midgut epithelial cells Platform: GPL21626 Series: GSE115314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3175nnn/GSM3175496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4161606 Sample Accession: GSM3175496 ID: 303175496 13216. ATAC-seq mouse E16.5 Cdx2-KO rep1 Organism: Mus musculus Source name: Mouse midgut epithelial cells Platform: GPL21626 Series: GSE115314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3175nnn/GSM3175495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4161605 Sample Accession: GSM3175495 ID: 303175495 13217. ATAC-seq mouse E16.5 wt rep2 Organism: Mus musculus Source name: Mouse midgut epithelial cells Platform: GPL21626 Series: GSE115314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3175nnn/GSM3175494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4161604 Sample Accession: GSM3175494 ID: 303175494 13218. ATAC-seq mouse E16.5 wt rep1 Organism: Mus musculus Source name: Mouse midgut epithelial cells Platform: GPL21626 Series: GSE115314 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3175nnn/GSM3175493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4161603 Sample Accession: GSM3175493 ID: 303175493 13219. LN naïve: DP ATAC-seq Rep 2 Organism: Homo sapiens Source name: naïve CD8+ T cells Platform: GPL21697 Series: GSE110684 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3011nnn/GSM3011775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3703080 Sample Accession: GSM3011775 ID: 303011775 13220. LN naïve: DP ATAC-seq Rep 1 Organism: Homo sapiens Source name: naïve CD8+ T cells Platform: GPL21697 Series: GSE110684 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3011nnn/GSM3011774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3703079 Sample Accession: GSM3011774 ID: 303011774 13221. LN CD69+: DP ATAC-seq Rep 2 Organism: Homo sapiens Source name: CD69+ CD8+ T cells Platform: GPL21697 Series: GSE110684 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3011nnn/GSM3011773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3703078 Sample Accession: GSM3011773 ID: 303011773 13222. LN CD69+: DP ATAC-seq Rep 1 Organism: Homo sapiens Source name: CD69+ CD8+ T cells Platform: GPL21697 Series: GSE110684 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3011nnn/GSM3011772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3703077 Sample Accession: GSM3011772 ID: 303011772 13223. LN CD69-: DP ATAC-seq Rep 2 Organism: Homo sapiens Source name: CD69- CD8+ T cells Platform: GPL21697 Series: GSE110684 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3011nnn/GSM3011771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3703076 Sample Accession: GSM3011771 ID: 303011771 13224. LN CD69-: DP ATAC-seq Rep 1 Organism: Homo sapiens Source name: CD69- CD8+ T cells Platform: GPL21697 Series: GSE110684 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3011nnn/GSM3011770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3703075 Sample Accession: GSM3011770 ID: 303011770 13225. YAP5SA CM ATAC-seq rep2 Organism: Mus musculus Source name: Cardiomyocyte nuclei Platform: GPL19057 Series: GSE123457 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3504nnn/GSM3504373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5101694 Sample Accession: GSM3504373 ID: 303504373 13226. YAP5SA CM ATAC-seq rep1 Organism: Mus musculus Source name: Cardiomyocyte nuclei Platform: GPL19057 Series: GSE123457 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3504nnn/GSM3504372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5101693 Sample Accession: GSM3504372 ID: 303504372 13227. Control CM ATAC-seq rep2 Organism: Mus musculus Source name: Cardiomyocyte nuclei Platform: GPL19057 Series: GSE123457 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3504nnn/GSM3504371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5101692 Sample Accession: GSM3504371 ID: 303504371 13228. Control CM ATAC-seq rep1 Organism: Mus musculus Source name: Cardiomyocyte nuclei Platform: GPL19057 Series: GSE123457 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3504nnn/GSM3504370/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5101691 Sample Accession: GSM3504370 ID: 303504370 13229. invitro 10U rep2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124820 Sample Accession: GSM3508360 ID: 303508360 13230. invitro 10U rep1 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124819 Sample Accession: GSM3508359 ID: 303508359 13231. invitro 10U PMAIono rep2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124818 Sample Accession: GSM3508358 ID: 303508358 13232. invitro 10U PMAIono rep1 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124817 Sample Accession: GSM3508357 ID: 303508357 13233. naive rep4 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124816 Sample Accession: GSM3508356 ID: 303508356 13234. naive rep3 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124815 Sample Accession: GSM3508355 ID: 303508355 13235. naive rep2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124814 Sample Accession: GSM3508354 ID: 303508354 13236. naive rep1 tr2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124813 Sample Accession: GSM3508353 ID: 303508353 13237. naive rep1 tr1 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124812 Sample Accession: GSM3508352 ID: 303508352 13238. invitro Mock rep2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124811 Sample Accession: GSM3508351 ID: 303508351 13239. invitro Mock rep1 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124810 Sample Accession: GSM3508350 ID: 303508350 13240. invitro NFAT CARIT rep2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124809 Sample Accession: GSM3508349 ID: 303508349 13241. invitro NFAT CARIT rep1 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124808 Sample Accession: GSM3508348 ID: 303508348 13242. exhausted rep4 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124807 Sample Accession: GSM3508347 ID: 303508347 13243. exhausted rep3 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124806 Sample Accession: GSM3508346 ID: 303508346 13244. exhausted rep1 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124805 Sample Accession: GSM3508345 ID: 303508345 13245. memory rep2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124804 Sample Accession: GSM3508344 ID: 303508344 13246. memory rep1 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124803 Sample Accession: GSM3508343 ID: 303508343 13247. effector rep2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124802 Sample Accession: GSM3508342 ID: 303508342 13248. effector rep1 tr2 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124801 Sample Accession: GSM3508341 ID: 303508341 13249. effector rep1 tr1 (re-analyzed) (atac-seq) Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124800 Sample Accession: GSM3508340 ID: 303508340 13250. RV Empty vector, in vitro rep2 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124799 Sample Accession: GSM3508339 ID: 303508339 13251. RV Empty vector, in vitro rep2 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124798 Sample Accession: GSM3508338 ID: 303508338 13252. RV HA-Nr4a3, in vitro rep2 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124797 Sample Accession: GSM3508337 ID: 303508337 13253. RV HA-Nr4a3, in vitro rep2 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124796 Sample Accession: GSM3508336 ID: 303508336 13254. RV HA-Nr4a2, in vitro rep2 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124795 Sample Accession: GSM3508335 ID: 303508335 13255. RV HA-Nr4a2, in vitro rep2 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124794 Sample Accession: GSM3508334 ID: 303508334 13256. RV HA-Nr4a1, in vitro rep2 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124793 Sample Accession: GSM3508333 ID: 303508333 13257. RV HA-Nr4a1, in vitro rep2 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124792 Sample Accession: GSM3508332 ID: 303508332 13258. RV Empty vector, in vitro rep1 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124791 Sample Accession: GSM3508331 ID: 303508331 13259. RV Empty vector, in vitro rep1 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124790 Sample Accession: GSM3508330 ID: 303508330 13260. RV HA-Nr4a3, in vitro rep1 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124789 Sample Accession: GSM3508329 ID: 303508329 13261. RV HA-Nr4a3, in vitro rep1 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124788 Sample Accession: GSM3508328 ID: 303508328 13262. RV HA-Nr4a2, in vitro rep1 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124787 Sample Accession: GSM3508327 ID: 303508327 13263. RV HA-Nr4a2, in vitro rep1 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124786 Sample Accession: GSM3508326 ID: 303508326 13264. RV HA-Nr4a1, in vitro rep1 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124785 Sample Accession: GSM3508325 ID: 303508325 13265. RV HA-Nr4a1, in vitro rep1 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124784 Sample Accession: GSM3508324 ID: 303508324 13266. CAR-T cells, in vitro rep5 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124783 Sample Accession: GSM3508323 ID: 303508323 13267. CAR-T cells, in vitro rep4 tr2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124782 Sample Accession: GSM3508322 ID: 303508322 13268. CAR-T cells, in vitro rep4 tr1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124781 Sample Accession: GSM3508321 ID: 303508321 13269. CAR-T cells, in vitro rep3 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124780 Sample Accession: GSM3508320 ID: 303508320 13270. CAR-T cells, in vitro rep2 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124779 Sample Accession: GSM3508319 ID: 303508319 13271. CAR-T cells, in vitro rep1 (atac-seq) Organism: Mus musculus Source name: spleen and peripheral lymph nodes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124778 Sample Accession: GSM3508318 ID: 303508318 13272. Endogenous T cells, PD1loTIM3lo rep8 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124777 Sample Accession: GSM3508317 ID: 303508317 13273. Endogenous T cells, PD1loTIM3lo rep7 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124776 Sample Accession: GSM3508316 ID: 303508316 13274. Endogenous T cells, PD1loTIM3lo rep6 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124775 Sample Accession: GSM3508315 ID: 303508315 13275. Endogenous T cells, PD1loTIM3lo rep6 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124774 Sample Accession: GSM3508314 ID: 303508314 13276. Endogenous T cells, PD1loTIM3lo rep5 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124773 Sample Accession: GSM3508313 ID: 303508313 13277. Endogenous T cells, PD1loTIM3lo rep2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124772 Sample Accession: GSM3508312 ID: 303508312 13278. Endogenous T cells, PD1loTIM3lo rep4 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124771 Sample Accession: GSM3508311 ID: 303508311 13279. Endogenous T cells, PD1loTIM3lo rep3 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124770 Sample Accession: GSM3508310 ID: 303508310 13280. Endogenous T cells, PD1loTIM3lo rep1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124769 Sample Accession: GSM3508309 ID: 303508309 13281. Endogenous T cells, PD1hiTIM3lo rep3 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124768 Sample Accession: GSM3508308 ID: 303508308 13282. Endogenous T cells, PD1hiTIM3lo rep2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124767 Sample Accession: GSM3508307 ID: 303508307 13283. Endogenous T cells, PD1hiTIM3lo rep1 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124766 Sample Accession: GSM3508306 ID: 303508306 13284. Endogenous T cells, PD1hiTIM3lo rep1 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124765 Sample Accession: GSM3508305 ID: 303508305 13285. Endogenous T cells, PD1hiTIM3hi rep8 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124764 Sample Accession: GSM3508304 ID: 303508304 13286. Endogenous T cells, PD1hiTIM3hi rep7 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124763 Sample Accession: GSM3508303 ID: 303508303 13287. Endogenous T cells, PD1hiTIM3hi rep7 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124762 Sample Accession: GSM3508302 ID: 303508302 13288. Endogenous T cells, PD1hiTIM3hi rep6 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124761 Sample Accession: GSM3508301 ID: 303508301 13289. Endogenous T cells, PD1hiTIM3hi rep6 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124760 Sample Accession: GSM3508300 ID: 303508300 13290. Endogenous T cells, PD1hiTIM3hi rep5 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124759 Sample Accession: GSM3508299 ID: 303508299 13291. Endogenous T cells, PD1hiTIM3hi rep4 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124758 Sample Accession: GSM3508298 ID: 303508298 13292. Endogenous T cells, PD1hiTIM3hi rep3 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124757 Sample Accession: GSM3508297 ID: 303508297 13293. Endogenous T cells, PD1hiTIM3hi rep2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124756 Sample Accession: GSM3508296 ID: 303508296 13294. Endogenous T cells, PD1hiTIM3hi rep1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124755 Sample Accession: GSM3508295 ID: 303508295 13295. OT-I T cells, PD1hiTIM3hi rep2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124754 Sample Accession: GSM3508294 ID: 303508294 13296. OT-I T cells, PD1hiTIM3hi rep1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124753 Sample Accession: GSM3508293 ID: 303508293 13297. CAR-T cells, PD1hiTIM3lo rep2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124752 Sample Accession: GSM3508292 ID: 303508292 13298. CAR-T cells, PD1hiTIM3lo rep1 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124751 Sample Accession: GSM3508291 ID: 303508291 13299. CAR-T cells, PD1hiTIM3lo rep1 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124750 Sample Accession: GSM3508290 ID: 303508290 13300. CAR-T cells, PD1hiTIM3hi rep5 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124749 Sample Accession: GSM3508289 ID: 303508289 13301. CAR-T cells, PD1hiTIM3hi rep4 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124748 Sample Accession: GSM3508288 ID: 303508288 13302. CAR-T cells, PD1hiTIM3hi rep4 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124747 Sample Accession: GSM3508287 ID: 303508287 13303. CAR-T cells, PD1hiTIM3hi rep3 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124746 Sample Accession: GSM3508286 ID: 303508286 13304. CAR-T cells, PD1hiTIM3hi rep3 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124745 Sample Accession: GSM3508285 ID: 303508285 13305. CAR-T cells, PD1hiTIM3hi rep2 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124744 Sample Accession: GSM3508284 ID: 303508284 13306. CAR-T cells, PD1hiTIM3hi rep2 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124743 Sample Accession: GSM3508283 ID: 303508283 13307. CAR-T cells, PD1hiTIM3hi rep1 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124742 Sample Accession: GSM3508282 ID: 303508282 13308. CAR-T cells, PD1hiTIM3hi rep1 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124741 Sample Accession: GSM3508281 ID: 303508281 13309. Nr4aTKO CAR-T cells rep2 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124740 Sample Accession: GSM3508280 ID: 303508280 13310. Nr4aTKO CAR-T cells rep2 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124739 Sample Accession: GSM3508279 ID: 303508279 13311. Nr4aTKO CAR-T cells rep1 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124738 Sample Accession: GSM3508278 ID: 303508278 13312. Nr4aTKO CAR-T cells rep1 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124737 Sample Accession: GSM3508277 ID: 303508277 13313. Nr4aWT CAR-T cells rep2 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124736 Sample Accession: GSM3508276 ID: 303508276 13314. Nr4aWT CAR-T cells rep2 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124735 Sample Accession: GSM3508275 ID: 303508275 13315. Nr4aWT CAR-T cells rep1 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124734 Sample Accession: GSM3508274 ID: 303508274 13316. Nr4aWT CAR-T cells rep1 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124733 Sample Accession: GSM3508273 ID: 303508273 13317. Nr4a3KO CAR-T cells rep2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124732 Sample Accession: GSM3508272 ID: 303508272 13318. Nr4a3KO CAR-T cells rep1 tr2 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124731 Sample Accession: GSM3508271 ID: 303508271 13319. Nr4a3KO CAR-T cells rep1 tr1 (atac-seq) Organism: Mus musculus Source name: B16-OVA-hCD19 tumor infiltrating lymphocytes Platform: GPL17021 Series: GSE123629 GSE123739 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5124730 Sample Accession: GSM3508270 ID: 303508270 13320. ATAC-Seq plus Estrogen Organism: Homo sapiens Source name: ATAC-Seq plus Estrogen Platform: GPL16791 Series: GSE99542 GSE99544 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2645nnn/GSM2645717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2876952 Sample Accession: GSM2645717 ID: 302645717 13321. ATAC-Seq minus Estrogen Organism: Homo sapiens Source name: ATAC-Seq minus Estrogen Platform: GPL16791 Series: GSE99542 GSE99544 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2645nnn/GSM2645716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2876951 Sample Accession: GSM2645716 ID: 302645716 13322. 20w BcorWT ATAC-seq Organism: Mus musculus Source name: Myeloid Progenitor Cells Platform: GPL19057 Series: GSE126175 GSE126264 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3592nnn/GSM3592646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5342448 Sample Accession: GSM3592646 ID: 303592646 13323. P0 mouse brain cortex, rep 5, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5330886 Sample Accession: GSM3590947 ID: 303590947 13324. P0 mouse brain cortex, rep 4, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5330884 Sample Accession: GSM3590945 ID: 303590945 13325. P0 mouse brain cortex, rep 3, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5330882 Sample Accession: GSM3590943 ID: 303590943 13326. P0 mouse brain cortex, rep 2, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5330880 Sample Accession: GSM3590941 ID: 303590941 13327. P0 mouse brain cortex, rep 1, ATAC-seq Organism: Mus musculus Source name: mouse brain Platform: GPL17021 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5330878 Sample Accession: GSM3590939 ID: 303590939 13328. human cell line mixture, ATAC-seq Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE126074 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5330876 Sample Accession: GSM3590937 ID: 303590937 13329. NHK_2: Normal Human Keratinocytes (ATAC-Seq) Organism: Homo sapiens Source name: keratinocyte from normal skin tissue Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4925287 Sample Accession: GSM3444165 ID: 303444165 13330. NHK_1: Normal Human Keratinocytes (ATAC-Seq) Organism: Homo sapiens Source name: keratinocyte from normal skin tissue Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4925286 Sample Accession: GSM3444164 ID: 303444164 13331. ipsKC_2: iPSC_Differentiation_mature keratinocytes(KC) (ATAC-Seq) Organism: Homo sapiens Source name: mature keratinocyte from iPSC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4925285 Sample Accession: GSM3444163 ID: 303444163 13332. ipsKC_1: iPSC_Differentiation_mature keratinocytes(KC) (ATAC-Seq) Organism: Homo sapiens Source name: mature keratinocyte from iPSC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4925284 Sample Accession: GSM3444162 ID: 303444162 13333. ipsD7_2: iPSC_Differentiation_D7 (ATAC-Seq) Organism: Homo sapiens Source name: progenitor cells from iPSC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4925283 Sample Accession: GSM3444161 ID: 303444161 13334. ipsD7_1: iPSC_Differentiation_D7 (ATAC-Seq) Organism: Homo sapiens Source name: progenitor cells from iPSC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4925282 Sample Accession: GSM3444160 ID: 303444160 13335. H9KC_2 [ATAC-Seq] Organism: Homo sapiens Source name: mature ketatinocyte from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099769 Sample Accession: GSM3146468 ID: 303146468 13336. H9KC_1 [ATAC-Seq] Organism: Homo sapiens Source name: mature ketatinocyte from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099768 Sample Accession: GSM3146467 ID: 303146467 13337. D43_2 [ATAC-Seq] Organism: Homo sapiens Source name: progenitor cells from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099767 Sample Accession: GSM3146466 ID: 303146466 13338. D43_1 [ATAC-Seq] Organism: Homo sapiens Source name: progenitor cells from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099766 Sample Accession: GSM3146465 ID: 303146465 13339. D21_2 [ATAC-Seq] Organism: Homo sapiens Source name: progenitor cells from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099765 Sample Accession: GSM3146464 ID: 303146464 13340. D21_1 [ATAC-Seq] Organism: Homo sapiens Source name: progenitor cells from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099764 Sample Accession: GSM3146463 ID: 303146463 13341. D14_2 [ATAC-Seq] Organism: Homo sapiens Source name: progenitor cells from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099763 Sample Accession: GSM3146462 ID: 303146462 13342. D14_1 [ATAC-Seq] Organism: Homo sapiens Source name: progenitor cells from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099762 Sample Accession: GSM3146461 ID: 303146461 13343. D7_2 [ATAC-Seq] Organism: Homo sapiens Source name: progenitor cells from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099761 Sample Accession: GSM3146460 ID: 303146460 13344. D7_1 [ATAC-Seq] Organism: Homo sapiens Source name: progenitor cells from hESC-epidermal differentiation Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099760 Sample Accession: GSM3146459 ID: 303146459 13345. H9_2 [ATAC-Seq] Organism: Homo sapiens Source name: undifferentiated human embryonic stem cell line H9 Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099759 Sample Accession: GSM3146458 ID: 303146458 13346. H9_1 [ATAC-Seq] Organism: Homo sapiens Source name: undifferentiated human embryonic stem cell line H9 Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4099758 Sample Accession: GSM3146457 ID: 303146457 13347. D21-AP2C+p63KO rep2 Organism: Homo sapiens Source name: epidermal differentiaiton from hESC at D21 Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3074nnn/GSM3074520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3875591 Sample Accession: GSM3074520 ID: 303074520 13348. D21-AP2C+p63KO rep1 Organism: Homo sapiens Source name: epidermal differentiaiton from hESC at D21 Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3074nnn/GSM3074519/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3875590 Sample Accession: GSM3074519 ID: 303074519 13349. D21-AP2C rep2 Organism: Homo sapiens Source name: epidermal differentiaiton from hESC at D21 Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3074nnn/GSM3074518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3875589 Sample Accession: GSM3074518 ID: 303074518 13350. D21-AP2C rep1 Organism: Homo sapiens Source name: epidermal differentiaiton from hESC at D21 Platform: GPL18573 Series: GSE108248 GSE122385 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3074nnn/GSM3074517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3875588 Sample Accession: GSM3074517 ID: 303074517 13351. ATAC-seq for patient CLL9 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972262 Sample Accession: GSM2691021 ID: 302691021 13352. ATAC-seq for patient CLL9 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972261 Sample Accession: GSM2691020 ID: 302691020 13353. ATAC-seq for patient CLL7 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972260 Sample Accession: GSM2691019 ID: 302691019 13354. ATAC-seq for patient CLL7 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972259 Sample Accession: GSM2691018 ID: 302691018 13355. ATAC-seq for patient CLL6 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972258 Sample Accession: GSM2691017 ID: 302691017 13356. ATAC-seq for patient CLL6 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972257 Sample Accession: GSM2691016 ID: 302691016 13357. ATAC-seq for patient CLL5 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972256 Sample Accession: GSM2691015 ID: 302691015 13358. ATAC-seq for patient CLL5 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972255 Sample Accession: GSM2691014 ID: 302691014 13359. ATAC-seq for patient CLL4 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972254 Sample Accession: GSM2691013 ID: 302691013 13360. ATAC-seq for patient CLL4 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972253 Sample Accession: GSM2691012 ID: 302691012 13361. ATAC-seq for patient CLL3 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972252 Sample Accession: GSM2691011 ID: 302691011 13362. ATAC-seq for patient CLL3 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972251 Sample Accession: GSM2691010 ID: 302691010 13363. ATAC-seq for patient CLL21 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972250 Sample Accession: GSM2691009 ID: 302691009 13364. ATAC-seq for patient CLL21 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972249 Sample Accession: GSM2691008 ID: 302691008 13365. ATAC-seq for patient CLL20 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972247 Sample Accession: GSM2691007 ID: 302691007 13366. ATAC-seq for patient CLL20 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972245 Sample Accession: GSM2691006 ID: 302691006 13367. ATAC-seq for patient CLL2 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691005/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972243 Sample Accession: GSM2691005 ID: 302691005 13368. ATAC-seq for patient CLL2 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972242 Sample Accession: GSM2691004 ID: 302691004 13369. ATAC-seq for patient CLL19 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972240 Sample Accession: GSM2691003 ID: 302691003 13370. ATAC-seq for patient CLL19 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972239 Sample Accession: GSM2691002 ID: 302691002 13371. ATAC-seq for patient CLL17 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972238 Sample Accession: GSM2691001 ID: 302691001 13372. ATAC-seq for patient CLL17 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2691nnn/GSM2691000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972237 Sample Accession: GSM2691000 ID: 302691000 13373. ATAC-seq for patient CLL16 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972236 Sample Accession: GSM2690999 ID: 302690999 13374. ATAC-seq for patient CLL16 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972235 Sample Accession: GSM2690998 ID: 302690998 13375. ATAC-seq for patient CLL15 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972234 Sample Accession: GSM2690997 ID: 302690997 13376. ATAC-seq for patient CLL15 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972233 Sample Accession: GSM2690996 ID: 302690996 13377. ATAC-seq for patient CLL14 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972232 Sample Accession: GSM2690995 ID: 302690995 13378. ATAC-seq for patient CLL14 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972231 Sample Accession: GSM2690994 ID: 302690994 13379. ATAC-seq for patient CLL13 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972230 Sample Accession: GSM2690993 ID: 302690993 13380. ATAC-seq for patient CLL13 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972229 Sample Accession: GSM2690992 ID: 302690992 13381. ATAC-seq for patient CLL12 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972228 Sample Accession: GSM2690991 ID: 302690991 13382. ATAC-seq for patient CLL12 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972227 Sample Accession: GSM2690990 ID: 302690990 13383. ATAC-seq for patient CLL11 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972226 Sample Accession: GSM2690989 ID: 302690989 13384. ATAC-seq for patient CLL11 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972225 Sample Accession: GSM2690988 ID: 302690988 13385. ATAC-seq for patient CLL10 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972224 Sample Accession: GSM2690987 ID: 302690987 13386. ATAC-seq for patient CLL10 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972223 Sample Accession: GSM2690986 ID: 302690986 13387. ATAC-seq for patient CLL1 before Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972222 Sample Accession: GSM2690985 ID: 302690985 13388. ATAC-seq for patient CLL1 during Ibrutinib treatment Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient Platform: GPL20301 Series: GSE100672 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2972221 Sample Accession: GSM2690984 ID: 302690984 13389. ffbe88c6-49c0-4fce-8542-56bb2930ee4a_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576786/ Sample Accession: GSM3576786 ID: 303576786 13390. f1e0d609-fe23-4a50-9316-e59094738d07_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576785/ Sample Accession: GSM3576785 ID: 303576785 13391. eaa627a7-7f87-418c-a79f-cf54db079ab4_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576784/ Sample Accession: GSM3576784 ID: 303576784 13392. e8df8eb0-a9c4-4231-bf83-6bf30ecaeae2_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576783/ Sample Accession: GSM3576783 ID: 303576783 13393. d95d608f-a645-4459-bd3b-79999e2d400a_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576782/ Sample Accession: GSM3576782 ID: 303576782 13394. bf276c4d-c784-481c-bcc3-a2a1028ad058_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576781/ Sample Accession: GSM3576781 ID: 303576781 13395. 917c5313-4a1b-4a27-8e68-df83b7f135f4_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576778/ Sample Accession: GSM3576778 ID: 303576778 13396. 77486cbe-cd49-4414-afcc-1d85438ff286_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576776/ Sample Accession: GSM3576776 ID: 303576776 13397. 63bbec42-175e-48e8-990d-432be9154380_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576775/ Sample Accession: GSM3576775 ID: 303576775 13398. 5d47b014-54e5-47b3-814c-a1de280537ba_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576774/ Sample Accession: GSM3576774 ID: 303576774 13399. 5baf0dab-42ba-4419-8d27-bc9406d61d44_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576773/ Sample Accession: GSM3576773 ID: 303576773 13400. 429d0e1c-3e06-496a-b819-f31e88a2fed0_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576771/ Sample Accession: GSM3576771 ID: 303576771 13401. 29f6f3bb-de7e-4204-adf3-19149bf7c143_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576770/ Sample Accession: GSM3576770 ID: 303576770 13402. 29c2aa2a-2d29-4261-a806-9f5204de2a7d_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576769/ Sample Accession: GSM3576769 ID: 303576769 13403. 26c6cb3d-7ca1-4051-9bb9-98ffb18f6d46_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576768/ Sample Accession: GSM3576768 ID: 303576768 13404. 244bb06f-40c8-4f55-a350-39b3b352ca1d_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576767/ Sample Accession: GSM3576767 ID: 303576767 13405. 1dc9a2ea-0225-4250-a17e-821dd8eec27a_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL20301 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576766/ Sample Accession: GSM3576766 ID: 303576766 13406. a0bfb58f-bf49-4f7c-9b64-c8a7b8af9ea4_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL16791 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576780/ Sample Accession: GSM3576780 ID: 303576780 13407. 989f8246-9010-4cc3-be5a-62316bf3a02d_iPSC-CM (ATAC-seq) Organism: Homo sapiens Source name: iPSC-CM Platform: GPL16791 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576779/ Sample Accession: GSM3576779 ID: 303576779 13408. 77654a6d-933a-4d7f-bfd2-8b9c5901fc87_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL16791 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576777/ Sample Accession: GSM3576777 ID: 303576777 13409. 52298625-e109-48b6-9b4c-f3bc7191692c_iPSC (ATAC-seq) Organism: Homo sapiens Source name: iPSC Platform: GPL16791 Series: GSE125540 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3576nnn/GSM3576772/ Sample Accession: GSM3576772 ID: 303576772 13410. U-CH2_2 Organism: Homo sapiens Source name: U-CH2 rep2 Platform: GPL11154 Series: GSE109785 GSE109794 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2967nnn/GSM2967243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3623413 Sample Accession: GSM2967243 ID: 302967243 13411. U-CH2_1 Organism: Homo sapiens Source name: U-CH2 rep1 Platform: GPL11154 Series: GSE109785 GSE109794 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2967nnn/GSM2967242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3623412 Sample Accession: GSM2967242 ID: 302967242 13412. MUG-Chor1 Organism: Homo sapiens Source name: MUG-Chor1 Platform: GPL11154 Series: GSE109785 GSE109794 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2967nnn/GSM2967241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3623411 Sample Accession: GSM2967241 ID: 302967241 13413. ATAC-seq; WT MEF cells; Rep2 Organism: Mus musculus Source name: Mouse embryonic female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712573 Sample Accession: GSM3394754 ID: 303394754 13414. ATAC-seq; WT MEF cells; Rep1 Organism: Mus musculus Source name: Mouse embryonic female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4712572 Sample Accession: GSM3394753 ID: 303394753 13415. ATAC-seq; XaWT Xi[delta]Xist cells; siBRG1; Rep2 Organism: Mus musculus Source name: Dermal female fibroblasts (XaWT Xi[delta]Xist). Genetic manipulation: Post XCI deletion of Xist on inactive X-chromosome Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587483 Sample Accession: GSM2942194 ID: 302942194 13416. ATAC-seq; XaWT Xi[delta]Xist cells; siBRG1; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (XaWT Xi[delta]Xist). Genetic manipulation: Post XCI deletion of Xist on inactive X-chromosome Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587482 Sample Accession: GSM2942193 ID: 302942193 13417. ATAC-seq; XaWT Xi[delta]Xist cells; siCTL; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (XaWT Xi[delta]Xist). Genetic manipulation: Post XCI deletion of Xist on inactive X-chromosome Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587481 Sample Accession: GSM2942192 ID: 302942192 13418. ATAC-seq; WT cells; siCHD4; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587480 Sample Accession: GSM2942191 ID: 302942191 13419. ATAC-seq; WT cells; siSNF2H; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587479 Sample Accession: GSM2942190 ID: 302942190 13420. ATAC-seq; WT cells; siBRG1; Rep2 Organism: Mus musculus Source name: Dermal female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587478 Sample Accession: GSM2942189 ID: 302942189 13421. ATAC-seq; WT cells; siBRG1; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587477 Sample Accession: GSM2942188 ID: 302942188 13422. ATAC-seq; WT cells; siCTL; Rep2 Organism: Mus musculus Source name: Dermal female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587476 Sample Accession: GSM2942187 ID: 302942187 13423. ATAC-seq; WT cells; siCTL; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587475 Sample Accession: GSM2942186 ID: 302942186 13424. ATAC-seq; XaWT Xi[delta]Xist #2 cells; Rep2 Organism: Mus musculus Source name: Dermal female fibroblasts (XaWT Xi[delta]Xist) 2nd cell line. Genetic manipulation: Post XCI deletion of Xist on inactive X-chromosome Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587474 Sample Accession: GSM2942185 ID: 302942185 13425. ATAC-seq; XaWT Xi[delta]Xist #2 cells; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (XaWT Xi[delta]Xist) 2nd cell line. Genetic manipulation: Post XCI deletion of Xist on inactive X-chromosome Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587473 Sample Accession: GSM2942184 ID: 302942184 13426. ATAC-seq; XaWT Xi[delta]Xist cells; Rep2 Organism: Mus musculus Source name: Dermal female fibroblasts (XaWT Xi[delta]Xist). Genetic manipulation: Post XCI deletion of Xist on inactive X-chromosome Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587472 Sample Accession: GSM2942183 ID: 302942183 13427. ATAC-seq; XaWT Xi[delta]Xist cells; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (XaWT Xi[delta]Xist). Genetic manipulation: Post XCI deletion of Xist on inactive X-chromosome Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587471 Sample Accession: GSM2942182 ID: 302942182 13428. ATAC-seq; WT cells; Rep2 Organism: Mus musculus Source name: Dermal female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587470 Sample Accession: GSM2942181 ID: 302942181 13429. ATAC-seq; WT cells; Rep1 Organism: Mus musculus Source name: Dermal female fibroblasts (WT) Platform: GPL17021 Series: GSE109395 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3587469 Sample Accession: GSM2942180 ID: 302942180 13430. ATAC-seq_serotoninergic neurons sample 2 Organism: Mus musculus Source name: serotoninergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2938nnn/GSM2938858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589800 Sample Accession: GSM2938858 ID: 302938858 13431. ATAC-seq_serotoninergic neurons sample 1 Organism: Mus musculus Source name: serotoninergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2938nnn/GSM2938857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589799 Sample Accession: GSM2938857 ID: 302938857 13432. ATAC-seq_dopaminergic neuron sample 3 Organism: Mus musculus Source name: dopaminergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2938nnn/GSM2938856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589798 Sample Accession: GSM2938856 ID: 302938856 13433. ATAC-seq_dopaminergic neuron sample 2 Organism: Mus musculus Source name: dopaminergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2938nnn/GSM2938855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589797 Sample Accession: GSM2938855 ID: 302938855 13434. ATAC-seq_dopaminergic neuron sample 1 Organism: Mus musculus Source name: dopaminergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2938nnn/GSM2938854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589796 Sample Accession: GSM2938854 ID: 302938854 13435. RNA-seq_serotoninergic neurons sample 3 Organism: Mus musculus Source name: serotoninergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589795 Sample Accession: GSM2938853 ID: 302938853 13436. RNA-seq_serotoninergic neurons sample 2 Organism: Mus musculus Source name: serotoninergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589794 Sample Accession: GSM2938852 ID: 302938852 13437. RNA-seq_serotoninergic neurons sample 1 Organism: Mus musculus Source name: serotoninergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589793 Sample Accession: GSM2938851 ID: 302938851 13438. RNA-seq_dopaminergic neuron sample 3 Organism: Mus musculus Source name: dopaminergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589792 Sample Accession: GSM2938850 ID: 302938850 13439. RNA-seq_dopaminergic neuron sample 2 Organism: Mus musculus Source name: dopaminergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589791 Sample Accession: GSM2938849 ID: 302938849 13440. RNA-seq_dopaminergic neuron sample 1 Organism: Mus musculus Source name: dopaminergic neurons from 14.5 day embryo Platform: GPL19057 Series: GSE108917 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3589790 Sample Accession: GSM2938848 ID: 302938848 13441. EndoC_BH1_HiC Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451235 Sample Accession: GSM3333916 ID: 303333916 13442. EndoC_BH1_ChIA_PET Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451239 Sample Accession: GSM3333915 ID: 303333915 13443. EndoC_BH1_miRNA_seq Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451237 Sample Accession: GSM3333913 ID: 303333913 13444. EndoC_BH1_ChIP_seq_H3K4me3_SE Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451243 Sample Accession: GSM3333911 ID: 303333911 13445. EndoC_BH1_ChIP_seq_Input_SE Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451242 Sample Accession: GSM3333910 ID: 303333910 13446. EndoC_BH1_ChIP_seq_H3K27ac_SE Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451241 Sample Accession: GSM3333909 ID: 303333909 13447. EndoC_BH1_ChIP_seq_CTCF_SE Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451240 Sample Accession: GSM3333908 ID: 303333908 13448. EndoC_BH1_ChIP_seq_H3K9me3 Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451234 Sample Accession: GSM3333907 ID: 303333907 13449. EndoC_BH1_ChIP_seq_H3K9me2 Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451233 Sample Accession: GSM3333906 ID: 303333906 13450. EndoC_BH1_ChIP_seq_H3K79me2 Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451226 Sample Accession: GSM3333905 ID: 303333905 13451. EndoC_BH1_ChIP_seq_H3K4me3 Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451225 Sample Accession: GSM3333904 ID: 303333904 13452. EndoC_BH1_ChIP_seq_H3K4me1 Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451228 Sample Accession: GSM3333903 ID: 303333903 13453. EndoC_BH1_ChIP_seq_H3K36me3 Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451227 Sample Accession: GSM3333902 ID: 303333902 13454. EndoC_BH1_ChIP_seq_H3K27me3 Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451230 Sample Accession: GSM3333901 ID: 303333901 13455. EndoC_BH1_ChIP_seq_H3K27ac Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451229 Sample Accession: GSM3333900 ID: 303333900 13456. EndoC_BH1_ChIP_seq_Input Organism: Homo sapiens Source name: Pancreas Platform: GPL16791 Series: GSE118588 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451232 Sample Accession: GSM3333899 ID: 303333899 13457. EndoC_BH1_RNA_seq Organism: Homo sapiens Source name: Pancreas Platform: GPL18573 Series: GSE118588 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451238 Sample Accession: GSM3333914 ID: 303333914 13458. EndoC_BH1_ATAC_seq Organism: Homo sapiens Source name: Pancreas Platform: GPL18573 Series: GSE118588 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4451236 Sample Accession: GSM3333912 ID: 303333912 13459. SMARCA2-infected H1703 ATAC-seq Organism: Homo sapiens Source name: H1703 lung cancer cells Platform: GPL16791 Series: GSE121755 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4933918 Sample Accession: GSM3445657 ID: 303445657 13460. SMARCA4-infected H1703 ATAC-seq Organism: Homo sapiens Source name: H1703 lung cancer cells Platform: GPL16791 Series: GSE121755 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4933917 Sample Accession: GSM3445656 ID: 303445656 13461. Control-infected H1703 ATAC-seq Organism: Homo sapiens Source name: H1703 lung cancer cells Platform: GPL16791 Series: GSE121755 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3445nnn/GSM3445655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4933916 Sample Accession: GSM3445655 ID: 303445655 13462. RASMC_ATAC_UNSTIM_REP2 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under unstimulated conditions at 0 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782493 Sample Accession: GSM3037945 ID: 303037945 13463. RASMC_ATAC_UNSTIM_REP1 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under unstimulated conditions at 0 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782492 Sample Accession: GSM3037944 ID: 303037944 13464. RASMC_ATAC_PDGF_JQ1_2H_REP2 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under addition of PDGF and JQ1 at 2 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782491 Sample Accession: GSM3037943 ID: 303037943 13465. RASMC_ATAC_PDGF_JQ1_2H_REP1 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under addition of PDGF and JQ1 at 2 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782490 Sample Accession: GSM3037942 ID: 303037942 13466. RASMC_ATAC_PDGF_JQ1_24H_REP2 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under addition of PDGF and JQ1 at 24 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782489 Sample Accession: GSM3037941 ID: 303037941 13467. RASMC_ATAC_PDGF_JQ1_24H_REP1 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under addition of PDGF and JQ1 at 24 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782488 Sample Accession: GSM3037940 ID: 303037940 13468. RASMC_ATAC_PDGF_2H_REP2 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under addition of PDGF at 2 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782487 Sample Accession: GSM3037939 ID: 303037939 13469. RASMC_ATAC_PDGF_2H_REP1 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under addition of PDGF at 2 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782486 Sample Accession: GSM3037938 ID: 303037938 13470. RASMC_ATAC_PDGF_24H_REP2 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under addition of PDGF at 24 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782485 Sample Accession: GSM3037937 ID: 303037937 13471. RASMC_ATAC_PDGF_24H_REP1 Organism: Rattus norvegicus Source name: ATAC-Seq of RASMC under addition of PDGF at 24 hours Platform: GPL18694 Series: GSE111713 GSE111715 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782484 Sample Accession: GSM3037936 ID: 303037936 13472. CB-HSPC_ATACseq Organism: Homo sapiens Source name: hematopoietic stem/progenitor cell from cord blood Platform: GPL16791 Series: GSE69932 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1713nnn/GSM1713292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1060090 Sample Accession: GSM1713292 ID: 301713292 13473. iPSC-HPC-IWR1_ATACseq Organism: Homo sapiens Source name: hematopoietic progenitor cell derived from iPSC Platform: GPL16791 Series: GSE69932 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1713nnn/GSM1713291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1060089 Sample Accession: GSM1713291 ID: 301713291 13474. iPSC-HPC-DMSO_ATACseq Organism: Homo sapiens Source name: hematopoietic progenitor cell derived from iPSC Platform: GPL16791 Series: GSE69932 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1713nnn/GSM1713290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1060088 Sample Accession: GSM1713290 ID: 301713290 13475. WT TH1, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: WT mice, LCMV Armstrong D8 Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742290 Sample Accession: GSM3402645 ID: 303402645 13476. WT TH1, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: WT mice, LCMV Armstrong D8 Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742289 Sample Accession: GSM3402644 ID: 303402644 13477. WT TFH, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: WT mice, LCMV Armstrong D8 Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742288 Sample Accession: GSM3402643 ID: 303402643 13478. WT TFH, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: WT mice, LCMV Armstrong D8 Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742287 Sample Accession: GSM3402642 ID: 303402642 13479. Naive CD4+ Cells, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: WT mice, naïve Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742286 Sample Accession: GSM3402641 ID: 303402641 13480. Naive CD4+ Cells, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: WT mice, naïve Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742285 Sample Accession: GSM3402640 ID: 303402640 13481. EZH2-null TH1, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: EZH2-null mice, LCMV Armstrong D8 Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742281 Sample Accession: GSM3402636 ID: 303402636 13482. EZH2-null TH1, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: EZH2-null mice, LCMV Armstrong D8 Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742280 Sample Accession: GSM3402635 ID: 303402635 13483. EZH2-null TFH, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: EZH2-null mice, LCMV Armstrong D8 Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742279 Sample Accession: GSM3402634 ID: 303402634 13484. EZH2-null TFH, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: EZH2-null mice, LCMV Armstrong D8 Platform: GPL21103 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742278 Sample Accession: GSM3402633 ID: 303402633 13485. Naive_2 CD4+ Cells, biological rep3 [ATAC-seq] Organism: Mus musculus Source name: WT mice, naïve Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742284 Sample Accession: GSM3402639 ID: 303402639 13486. Naive_2 CD4+ Cells, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: WT mice, naïve Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742283 Sample Accession: GSM3402638 ID: 303402638 13487. Naive_2 CD4+ Cells, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: WT mice, naïve Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742282 Sample Accession: GSM3402637 ID: 303402637 13488. D8 SMARTA TH1, biological rep3 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D8 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742277 Sample Accession: GSM3402632 ID: 303402632 13489. D8 SMARTA TH1, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D8 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742276 Sample Accession: GSM3402631 ID: 303402631 13490. D8 SMARTA TH1, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D8 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742275 Sample Accession: GSM3402630 ID: 303402630 13491. D8 SMARTA TFH, biological rep3 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D8 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742274 Sample Accession: GSM3402629 ID: 303402629 13492. D8 SMARTA TFH, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D8 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742273 Sample Accession: GSM3402628 ID: 303402628 13493. D8 SMARTA TFH, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D8 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742272 Sample Accession: GSM3402627 ID: 303402627 13494. D5 SMARTA TH1, biological rep3 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D5 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742271 Sample Accession: GSM3402626 ID: 303402626 13495. D5 SMARTA TH1, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D5 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742270 Sample Accession: GSM3402625 ID: 303402625 13496. D5 SMARTA TH1, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D5 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742269 Sample Accession: GSM3402624 ID: 303402624 13497. D5 SMARTA TFH, biological rep3 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D5 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742268 Sample Accession: GSM3402623 ID: 303402623 13498. D5 SMARTA TFH, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D5 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742267 Sample Accession: GSM3402622 ID: 303402622 13499. D5 SMARTA TFH, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D5 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742266 Sample Accession: GSM3402621 ID: 303402621 13500. D2 SMARTA TH1, biological rep3 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D2 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742265 Sample Accession: GSM3402620 ID: 303402620 13501. D2 SMARTA TH1, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D2 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742264 Sample Accession: GSM3402619 ID: 303402619 13502. D2 SMARTA TH1, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D2 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742263 Sample Accession: GSM3402618 ID: 303402618 13503. D2 SMARTA TFH, biological rep3 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D2 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742262 Sample Accession: GSM3402617 ID: 303402617 13504. D2 SMARTA TFH, biological rep2 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D2 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742261 Sample Accession: GSM3402616 ID: 303402616 13505. D2 SMARTA TFH, biological rep1 [ATAC-seq] Organism: Mus musculus Source name: SMARTA chimera mice, LCMV Armstrong D2 Platform: GPL19057 Series: GSE120532 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3402nnn/GSM3402615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4742260 Sample Accession: GSM3402615 ID: 303402615 13506. UGS ATAC-seq Organism: Mus musculus Source name: mouse urogenital sinus (UGS) Platform: GPL17021 Series: GSE123102 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3495nnn/GSM3495193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5078119 Sample Accession: GSM3495193 ID: 303495193 13507. Root ATAC seq Lib 3 Organism: Arabidopsis thaliana Source name: root Platform: GPL17639 Series: GSE122771 GSE122772 FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5036315 Sample Accession: GSM3484759 ID: 303484759 13508. Root ATAC seq Lib 2 Organism: Arabidopsis thaliana Source name: root Platform: GPL17639 Series: GSE122771 GSE122772 FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5036314 Sample Accession: GSM3484758 ID: 303484758 13509. Root ATAC seq Lib 1 Organism: Arabidopsis thaliana Source name: root Platform: GPL17639 Series: GSE122771 GSE122772 FTP download: GEO (BED, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3484nnn/GSM3484757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX5036313 Sample Accession: GSM3484757 ID: 303484757 13510. 5546_NAcc_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640549 Sample Accession: GSM2536654 ID: 302536654 13511. 5540_NAcc_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640548 Sample Accession: GSM2536653 ID: 302536653 13512. 5540_NAcc_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640547 Sample Accession: GSM2536652 ID: 302536652 13513. 5456_NAcc_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640546 Sample Accession: GSM2536651 ID: 302536651 13514. 5456_BA9_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640545 Sample Accession: GSM2536650 ID: 302536650 13515. 5456_BA9_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640544 Sample Accession: GSM2536649 ID: 302536649 13516. 5343_NAcc_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640543 Sample Accession: GSM2536648 ID: 302536648 13517. 5343_NAcc_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640542 Sample Accession: GSM2536647 ID: 302536647 13518. 5343_BA9_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640541 Sample Accession: GSM2536646 ID: 302536646 13519. 5343_BA9_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640540 Sample Accession: GSM2536645 ID: 302536645 13520. 5540_BA9_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640539 Sample Accession: GSM2536644 ID: 302536644 13521. 5540_BA9_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640538 Sample Accession: GSM2536643 ID: 302536643 13522. 5347_NAcc_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640537 Sample Accession: GSM2536642 ID: 302536642 13523. 5404_BA9_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640536 Sample Accession: GSM2536641 ID: 302536641 13524. 5358_BA9_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640535 Sample Accession: GSM2536640 ID: 302536640 13525. 5347_BA9_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640534 Sample Accession: GSM2536639 ID: 302536639 13526. 5358_NAcc_pos (ATAC-Seq) Organism: Homo sapiens Source name: NeuN positive nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640533 Sample Accession: GSM2536638 ID: 302536638 13527. 5347_NAcc_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640532 Sample Accession: GSM2536637 ID: 302536637 13528. 5404_BA9_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640531 Sample Accession: GSM2536636 ID: 302536636 13529. 5358_BA9_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640530 Sample Accession: GSM2536635 ID: 302536635 13530. 5347_BA9_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from prefrontal cortex (BA9) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640529 Sample Accession: GSM2536634 ID: 302536634 13531. 5358_NAcc_neg (ATAC-Seq) Organism: Homo sapiens Source name: NeuN negative nuclei sorted from nucleus accumbens (NAcc) Platform: GPL20301 Series: GSE96614 GSE96615 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2640528 Sample Accession: GSM2536633 ID: 302536633 13532. shUhrf1 rep#2 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471744 Sample Accession: GSM2889308 ID: 302889308 13533. shUhrf1 rep#1 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471743 Sample Accession: GSM2889307 ID: 302889307 13534. shSetdb1 rep#3 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471742 Sample Accession: GSM2889306 ID: 302889306 13535. shSetdb1 rep#2 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471741 Sample Accession: GSM2889305 ID: 302889305 13536. shSetdb1 rep#1 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471740 Sample Accession: GSM2889304 ID: 302889304 13537. shRrp8 rep#2 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471739 Sample Accession: GSM2889303 ID: 302889303 13538. shRrp8 rep#1 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471738 Sample Accession: GSM2889302 ID: 302889302 13539. shRnf2 rep#3 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471737 Sample Accession: GSM2889301 ID: 302889301 13540. shRnf2 rep#2 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471736 Sample Accession: GSM2889300 ID: 302889300 13541. shRnf2 rep#1 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471735 Sample Accession: GSM2889299 ID: 302889299 13542. shPrmt5 rep#2 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471734 Sample Accession: GSM2889298 ID: 302889298 13543. shPrmt5 rep#1 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471733 Sample Accession: GSM2889297 ID: 302889297 13544. shNcor2 rep#2 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471730 Sample Accession: GSM2889294 ID: 302889294 13545. shNcor2 rep#1 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471729 Sample Accession: GSM2889293 ID: 302889293 13546. shLuc rep#3 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471728 Sample Accession: GSM2889292 ID: 302889292 13547. shLuc rep#2 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471727 Sample Accession: GSM2889291 ID: 302889291 13548. shLuc rep#1 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471726 Sample Accession: GSM2889290 ID: 302889290 13549. shKat5 rep#2 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471725 Sample Accession: GSM2889289 ID: 302889289 13550. shKat5 rep#1 (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471724 Sample Accession: GSM2889288 ID: 302889288 13551. shGFP (ATAC-seq) Organism: Mus musculus Source name: mouse embryonic stem cell Platform: GPL19057 Series: GSE108086 GSE108091 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2889nnn/GSM2889287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3471723 Sample Accession: GSM2889287 ID: 302889287 13552. Control DMSO rep3 b3 Organism: Homo sapiens Source name: forebrain neurons_Control DMSO Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708655 Sample Accession: GSM2564060 ID: 302564060 13553. Control DMSO rep2 b3 Organism: Homo sapiens Source name: forebrain neurons_Control DMSO Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708654 Sample Accession: GSM2564059 ID: 302564059 13554. Control DMSO rep1 b3 Organism: Homo sapiens Source name: forebrain neurons_Control DMSO Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708653 Sample Accession: GSM2564058 ID: 302564058 13555. Tau DMSO rep3 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau DMSO Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708652 Sample Accession: GSM2564057 ID: 302564057 13556. Tau DMSO rep2 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau DMSO Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708651 Sample Accession: GSM2564056 ID: 302564056 13557. Tau DMSO rep1 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau DMSO Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708650 Sample Accession: GSM2564055 ID: 302564055 13558. Tau 17-DMAG 10nM rep3 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 10nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708649 Sample Accession: GSM2564054 ID: 302564054 13559. Tau 17-DMAG 10nM rep2 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 10nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708648 Sample Accession: GSM2564053 ID: 302564053 13560. Tau 17-DMAG 10nM rep1 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 10nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708647 Sample Accession: GSM2564052 ID: 302564052 13561. Tau 17-DMAG 3nM rep3 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 3nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708646 Sample Accession: GSM2564051 ID: 302564051 13562. Tau 17-DMAG 3nM rep2 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 3nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708645 Sample Accession: GSM2564050 ID: 302564050 13563. Tau 17-DMAG 3nM rep1 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 3nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708644 Sample Accession: GSM2564049 ID: 302564049 13564. Tau 17-DMAG 1nM rep3 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 1nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708643 Sample Accession: GSM2564048 ID: 302564048 13565. Tau 17-DMAG 1nM rep2 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 1nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708642 Sample Accession: GSM2564047 ID: 302564047 13566. Tau 17-DMAG 1nM rep1 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 1nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708641 Sample Accession: GSM2564046 ID: 302564046 13567. Tau 17-DMAG 3nM rep3 b2 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 3nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708640 Sample Accession: GSM2564045 ID: 302564045 13568. Tau 17-DMAG 3nM rep2 b2 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 3nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708639 Sample Accession: GSM2564044 ID: 302564044 13569. Tau 17-DMAG 3nM rep1 b2 Organism: Homo sapiens Source name: forebrain neurons_Tau 17-DMAG 3nM Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708638 Sample Accession: GSM2564043 ID: 302564043 13570. Control rep3 b3 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708637 Sample Accession: GSM2564042 ID: 302564042 13571. Control rep2 b3 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708636 Sample Accession: GSM2564041 ID: 302564041 13572. Control rep1 b3 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708635 Sample Accession: GSM2564040 ID: 302564040 13573. Tau rep3 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708634 Sample Accession: GSM2564039 ID: 302564039 13574. Tau rep2 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708633 Sample Accession: GSM2564038 ID: 302564038 13575. Tau rep1 b3 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708632 Sample Accession: GSM2564037 ID: 302564037 13576. Control rep3 b2 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708631 Sample Accession: GSM2564036 ID: 302564036 13577. Control rep2 b2 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708630 Sample Accession: GSM2564035 ID: 302564035 13578. Control rep1 b2 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708629 Sample Accession: GSM2564034 ID: 302564034 13579. Tau rep3 b2 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708628 Sample Accession: GSM2564033 ID: 302564033 13580. Tau rep2 b2 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708627 Sample Accession: GSM2564032 ID: 302564032 13581. Tau rep1 b2 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708626 Sample Accession: GSM2564031 ID: 302564031 13582. Control rep3 b1 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708625 Sample Accession: GSM2564030 ID: 302564030 13583. Control rep2 b1 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708624 Sample Accession: GSM2564029 ID: 302564029 13584. Control rep1 b1 Organism: Homo sapiens Source name: forebrain neurons_Control Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708623 Sample Accession: GSM2564028 ID: 302564028 13585. Tau rep3 b1 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708622 Sample Accession: GSM2564027 ID: 302564027 13586. Tau rep2 b1 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708621 Sample Accession: GSM2564026 ID: 302564026 13587. Tau rep1 b1 Organism: Homo sapiens Source name: forebrain neurons_Tau Platform: GPL16791 Series: GSE97409 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2708620 Sample Accession: GSM2564025 ID: 302564025 13588. foxd3over_INJ3 Organism: Danio rerio Source name: foxd3over_INJ3 Platform: GPL20828 Series: GSE106676 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4707943 Sample Accession: GSM3393488 ID: 303393488 13589. foxd3over_INJ2 Organism: Danio rerio Source name: foxd3over_INJ2 Platform: GPL20828 Series: GSE106676 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4707942 Sample Accession: GSM3393487 ID: 303393487 13590. foxd3over_INJ1 Organism: Danio rerio Source name: foxd3over_INJ1 Platform: GPL20828 Series: GSE106676 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4707941 Sample Accession: GSM3393486 ID: 303393486 13591. foxd3over_CTL3 Organism: Danio rerio Source name: foxd3over_CTL3 Platform: GPL20828 Series: GSE106676 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4707940 Sample Accession: GSM3393485 ID: 303393485 13592. foxd3over_CTL2 Organism: Danio rerio Source name: foxd3over_CTL2 Platform: GPL20828 Series: GSE106676 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4707939 Sample Accession: GSM3393484 ID: 303393484 13593. foxd3over_CTL1 Organism: Danio rerio Source name: foxd3over_CTL1 Platform: GPL20828 Series: GSE106676 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4707938 Sample Accession: GSM3393483 ID: 303393483 13594. ATACseq_Rx_NCC_Citrine-Cherry Organism: Danio rerio Source name: Citrine reporter and Cherry reporter expressing cells from 5-6ss embryos piked with S2 cell Drosophila genomic DNA Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374203 Sample Accession: GSM2845189 ID: 302845189 13595. ATACseq_Rx_NCC_Citrine Organism: Danio rerio Source name: Citrine reporter expressing cells from 5-6ss embryos spiked with S2 cell Drosophila genomic DNA Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374202 Sample Accession: GSM2845188 ID: 302845188 13596. ATACseq_NCC_Citrine-Cherry_2 Organism: Danio rerio Source name: Citrine reporter and Cherry reporter expressing cells from 5-6ss embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374201 Sample Accession: GSM2845187 ID: 302845187 13597. ATACseq_NCC_Citrine-Cherry_1 Organism: Danio rerio Source name: Citrine reporter and Cherry reporter expressing cells from 5-6ss embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374200 Sample Accession: GSM2845186 ID: 302845186 13598. ATACseq_NCC_Citrine_2 Organism: Danio rerio Source name: Citrine reporter expressing cells from 5-6ss embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374199 Sample Accession: GSM2845185 ID: 302845185 13599. ATACseq_NCC_Citrine_1 Organism: Danio rerio Source name: Citrine reporter expressing cells from 5-6ss embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374198 Sample Accession: GSM2845184 ID: 302845184 13600. ATACseq_BudStage_Head_Citrine-Cherry_1 Organism: Danio rerio Source name: Citrine reporter and Cherry reporter expressing cells from 1ss stage embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374197 Sample Accession: GSM2845183 ID: 302845183 13601. ATACseq_BudStage_Head_Citrine_2 Organism: Danio rerio Source name: Citrine reporter expressing cells from 1ss embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374196 Sample Accession: GSM2845182 ID: 302845182 13602. ATACseq_BudStage_Head_Citrine_1 Organism: Danio rerio Source name: Citrine reporter expressing cells from 1ss embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374195 Sample Accession: GSM2845181 ID: 302845181 13603. ATACseq_Epiboly_Citrine-Cherry_2 Organism: Danio rerio Source name: Citrine reporter and Cherry reporter expressing cells from 75% Epiboly stage embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374194 Sample Accession: GSM2845180 ID: 302845180 13604. ATACseq_Epiboly_Citrine-Cherry_1 Organism: Danio rerio Source name: Citrine reporter and Cherry reporter expressing cells from 75% Epiboly stage embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374193 Sample Accession: GSM2845179 ID: 302845179 13605. ATACseq_Epiboly_Citrine_2 Organism: Danio rerio Source name: Citrine reporter expressing cells from 75% Epiboly stage embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374192 Sample Accession: GSM2845178 ID: 302845178 13606. ATACseq_Epiboly_Citrine_1 Organism: Danio rerio Source name: Citrine reporter expressing cells from 75% Epiboly stage embryos Platform: GPL20828 Series: GSE106676 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3374191 Sample Accession: GSM2845177 ID: 302845177 13607. Stim Phen Organism: Mus musculus Source name: CD8 lymphocyte Platform: GPL19057 Series: GSE107724 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2877nnn/GSM2877064/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3445691 Sample Accession: GSM2877064 ID: 302877064 13608. Stim untreated Organism: Mus musculus Source name: CD8 lymphocyte Platform: GPL19057 Series: GSE107724 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2877nnn/GSM2877063/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3445690 Sample Accession: GSM2877063 ID: 302877063 13609. Non-stim Phen Organism: Mus musculus Source name: CD8 lymphocyte Platform: GPL19057 Series: GSE107724 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2877nnn/GSM2877062/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3445689 Sample Accession: GSM2877062 ID: 302877062 13610. Non-stim untreated Organism: Mus musculus Source name: CD8 lymphocyte Platform: GPL19057 Series: GSE107724 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2877nnn/GSM2877061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3445688 Sample Accession: GSM2877061 ID: 302877061 13611. ATAC-seq, Primary stromal cells from BM undifferentiated donor b Organism: Homo sapiens Source name: Primary stromal cells from BM undifferentiated donor b Platform: GPL18460 Series: GSE113253 Sample Accession: GSM3405917 ID: 303405917 13612. ATAC-seq, Primary stromal cells from BM undifferentiated donor a Organism: Homo sapiens Source name: Primary stromal cells from BM undifferentiated donor a Platform: GPL18460 Series: GSE113253 Sample Accession: GSM3405916 ID: 303405916 13613. ATAC-seq, Primary stromal cells from MUS undifferentiated donor b Organism: Homo sapiens Source name: Primary stromal cells from MUS undifferentiated donor b Platform: GPL18460 Series: GSE113253 Sample Accession: GSM3405915 ID: 303405915 13614. ATAC-seq, Primary stromal cells from MUS undifferentiated donor a Organism: Homo sapiens Source name: Primary stromal cells from MUS undifferentiated donor a Platform: GPL18460 Series: GSE113253 Sample Accession: GSM3405914 ID: 303405914 13615. ATAC-seq, Primary stromal cells from WAT undifferentiated donor b Organism: Homo sapiens Source name: Primary stromal cells from WAT undifferentiated donor b Platform: GPL18460 Series: GSE113253 Sample Accession: GSM3405913 ID: 303405913 13616. ATAC-seq, Primary stromal cells from WAT undifferentiated donor a Organism: Homo sapiens Source name: Primary stromal cells from WAT undifferentiated donor a Platform: GPL18460 Series: GSE113253 Sample Accession: GSM3405912 ID: 303405912 13617. ATAC-seq, AT-hMSC-TERT undifferentiated rep2 Organism: Homo sapiens Source name: AT-hMSC-TERT undifferentiated Platform: GPL24676 Series: GSE113253 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4774791 Sample Accession: GSM3405920 ID: 303405920 13618. ATAC-seq, AT-hMSC-TERT undifferentiated rep1 Organism: Homo sapiens Source name: AT-hMSC-TERT undifferentiated Platform: GPL24676 Series: GSE113253 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4774790 Sample Accession: GSM3405919 ID: 303405919 13619. ATAC-seq, BM-hMSC-TERT4 undifferentiated Organism: Homo sapiens Source name: BM-hMSC-TERT4 undifferentiated Platform: GPL24676 Series: GSE113253 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4774789 Sample Accession: GSM3405918 ID: 303405918 13620. ATAC-seq pro-B cell [41508] Organism: Mus musculus Source name: Pro-B cell Platform: GPL17021 Series: GSE111692 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3037nnn/GSM3037402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3781843 Sample Accession: GSM3037402 ID: 303037402 13621. ATAC-Seq R96 DF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848020 Sample Accession: GSM3067778 ID: 303067778 13622. ATAC-Seq R96 UF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848019 Sample Accession: GSM3067777 ID: 303067777 13623. ATAC-Seq J119 DF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848018 Sample Accession: GSM3067776 ID: 303067776 13624. ATAC-Seq J119 UF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848017 Sample Accession: GSM3067775 ID: 303067775 13625. ATAC-Seq Y97 DF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848016 Sample Accession: GSM3067774 ID: 303067774 13626. ATAC-Seq Y97 UF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848015 Sample Accession: GSM3067773 ID: 303067773 13627. ATAC-Seq L101 DF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848014 Sample Accession: GSM3067772 ID: 303067772 13628. ATAC-Seq L101 UF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848013 Sample Accession: GSM3067771 ID: 303067771 13629. ATAC-Seq HAEC UF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848012 Sample Accession: GSM3067770 ID: 303067770 13630. ATAC-Seq HAEC DF Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848011 Sample Accession: GSM3067769 ID: 303067769 13631. ATAC-Seq HAEC Static 2 Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848010 Sample Accession: GSM3067768 ID: 303067768 13632. ATAC-Seq HAEC Static 1 Organism: Homo sapiens Source name: Human Aortic Endothelial Cells Platform: GPL20301 Series: GSE112328 GSE112340 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3067nnn/GSM3067767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3848009 Sample Accession: GSM3067767 ID: 303067767 13633. Fibroblast-young-4 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291985 Sample Accession: GSM2817577 ID: 302817577 13634. Fibroblast-young-3 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291984 Sample Accession: GSM2817576 ID: 302817576 13635. Fibroblast-young-2 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291982 Sample Accession: GSM2817575 ID: 302817575 13636. Fibroblast-young-1 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291981 Sample Accession: GSM2817574 ID: 302817574 13637. Fibroblast-old-4 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291980 Sample Accession: GSM2817573 ID: 302817573 13638. Fibroblast-old-3 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291979 Sample Accession: GSM2817572 ID: 302817572 13639. Fibroblast-old-2 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291978 Sample Accession: GSM2817571 ID: 302817571 13640. Fibroblast-old-1 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291977 Sample Accession: GSM2817570 ID: 302817570 13641. ASC-young-6 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291976 Sample Accession: GSM2817569 ID: 302817569 13642. ASC-young-5 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291975 Sample Accession: GSM2817568 ID: 302817568 13643. ASC-young-4 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291974 Sample Accession: GSM2817567 ID: 302817567 13644. ASC-young-3 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291973 Sample Accession: GSM2817566 ID: 302817566 13645. ASC-young-2 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291972 Sample Accession: GSM2817565 ID: 302817565 13646. ASC-young-1 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291971 Sample Accession: GSM2817564 ID: 302817564 13647. ASC-old-7 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291970 Sample Accession: GSM2817563 ID: 302817563 13648. ASC-old-6 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291969 Sample Accession: GSM2817562 ID: 302817562 13649. ASC-old-5 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291968 Sample Accession: GSM2817561 ID: 302817561 13650. ASC-old-4 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291967 Sample Accession: GSM2817560 ID: 302817560 13651. ASC-old-3 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291966 Sample Accession: GSM2817559 ID: 302817559 13652. ASC-old-2 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291965 Sample Accession: GSM2817558 ID: 302817558 13653. ASC-old-1 Organism: Homo sapiens Source name: primary cells Platform: GPL18573 Series: GSE105077 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2817nnn/GSM2817557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3291964 Sample Accession: GSM2817557 ID: 302817557 13654. HFF Non Sync ATAC-seq R1T1 Organism: Homo sapiens Source name: HFF Platform: GPL15520 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991876 Sample Accession: GSM3462834 ID: 303462834 13655. HFF Non Sync ATAC-seq R1T2 Organism: Homo sapiens Source name: HFF Platform: GPL15520 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991875 Sample Accession: GSM3462833 ID: 303462833 13656. HFF Non Sync ATAC-seq R1T3 Organism: Homo sapiens Source name: HFF Platform: GPL15520 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991874 Sample Accession: GSM3462832 ID: 303462832 13657. HFF Non Sync ATAC-seq R1T4 Organism: Homo sapiens Source name: HFF Platform: GPL15520 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991873 Sample Accession: GSM3462831 ID: 303462831 13658. HeLa Non Sync ATAC-seq R1T1 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991902 Sample Accession: GSM3462860 ID: 303462860 13659. HeLa Non Sync ATAC-seq R1T2 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991901 Sample Accession: GSM3462859 ID: 303462859 13660. HeLa Mitotic Cell ATAC-seq R2T1 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991884 Sample Accession: GSM3462842 ID: 303462842 13661. HeLa Mitotic Cell ATAC-seq R2T2 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991883 Sample Accession: GSM3462841 ID: 303462841 13662. HeLa Mitotic Chromatin (frozen) ATAC-seq R2T1 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991880 Sample Accession: GSM3462838 ID: 303462838 13663. HeLa Mitotic Chromatin (frozen) ATAC-seq R2T2 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991879 Sample Accession: GSM3462837 ID: 303462837 13664. HFF Mitotic Cell ATAC-seq R1T1 Organism: Homo sapiens Source name: HFF Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991872 Sample Accession: GSM3462830 ID: 303462830 13665. HFF Mitotic Cell ATAC-seq R1T2 Organism: Homo sapiens Source name: HFF Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991871 Sample Accession: GSM3462829 ID: 303462829 13666. HFF Mitotic Cell ATAC-seq R1T3 Organism: Homo sapiens Source name: HFF Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991870 Sample Accession: GSM3462828 ID: 303462828 13667. HFF Mitotic Cell ATAC-seq R1T4 Organism: Homo sapiens Source name: HFF Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991869 Sample Accession: GSM3462827 ID: 303462827 13668. HFF Mitotic Cell ATAC-seq R1T5 Organism: Homo sapiens Source name: HFF Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991868 Sample Accession: GSM3462826 ID: 303462826 13669. HFF Mitotic Cell ATAC-seq R1T6 Organism: Homo sapiens Source name: HFF Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991867 Sample Accession: GSM3462825 ID: 303462825 13670. HFF Mitotic Cell ATAC-seq R1T7 Organism: Homo sapiens Source name: HFF Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991866 Sample Accession: GSM3462824 ID: 303462824 13671. HFF Mitotic Cell ATAC-seq R1T8 Organism: Homo sapiens Source name: HFF Platform: GPL11154 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991865 Sample Accession: GSM3462823 ID: 303462823 13672. HFF Non Sync ATAC-seq R2T1 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991934 Sample Accession: GSM3462892 ID: 303462892 13673. HFF Non Sync ATAC-seq R2T2 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991933 Sample Accession: GSM3462891 ID: 303462891 13674. HFF Non Sync ATAC-seq R2T3 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991932 Sample Accession: GSM3462890 ID: 303462890 13675. HFF Non Sync ATAC-seq R2T4 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991931 Sample Accession: GSM3462889 ID: 303462889 13676. HFF Mitotic Cell ATAC-seq R2T1 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991930 Sample Accession: GSM3462888 ID: 303462888 13677. HFF Mitotic Cell ATAC-seq R2T2 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991929 Sample Accession: GSM3462887 ID: 303462887 13678. HFF Mitotic Cell ATAC-seq R2T3 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991928 Sample Accession: GSM3462886 ID: 303462886 13679. HFF Mitotic Cell ATAC-seq R2T4 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991927 Sample Accession: GSM3462885 ID: 303462885 13680. U2OS H2B-GFP Halo-CTCF Non Sync ATAC-seq R1T1 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991926 Sample Accession: GSM3462884 ID: 303462884 13681. U2OS H2B-GFP Halo-CTCF Non Sync ATAC-seq R1T2 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991925 Sample Accession: GSM3462883 ID: 303462883 13682. U2OS H2B-GFP Halo-CTCF Non Sync ATAC-seq R1T3 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991924 Sample Accession: GSM3462882 ID: 303462882 13683. U2OS H2B-GFP Halo-CTCF Non Sync ATAC-seq R1T4 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991923 Sample Accession: GSM3462881 ID: 303462881 13684. U2OS H2B-GFP Halo-CTCF Non Sync ATAC-seq R2T1 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991922 Sample Accession: GSM3462880 ID: 303462880 13685. U2OS H2B-GFP Halo-CTCF Non Sync ATAC-seq R2T2 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991921 Sample Accession: GSM3462879 ID: 303462879 13686. U2OS H2B-GFP Halo-CTCF Non Sync ATAC-seq R2T3 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991920 Sample Accession: GSM3462878 ID: 303462878 13687. U2OS H2B-GFP Halo-CTCF Non Sync ATAC-seq R2T4 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991919 Sample Accession: GSM3462877 ID: 303462877 13688. U2OS H2B-GFP Halo-CTCF Mitotic Cell ATAC-seq R1T1 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991918 Sample Accession: GSM3462876 ID: 303462876 13689. U2OS H2B-GFP Halo-CTCF Mitotic Cell ATAC-seq R1T2 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991917 Sample Accession: GSM3462875 ID: 303462875 13690. U2OS H2B-GFP Halo-CTCF Mitotic Cell ATAC-seq R1T3 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991916 Sample Accession: GSM3462874 ID: 303462874 13691. U2OS H2B-GFP Halo-CTCF Mitotic Cell ATAC-seq R1T4 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991915 Sample Accession: GSM3462873 ID: 303462873 13692. U2OS H2B-GFP Halo-CTCF Mitotic Cell ATAC-seq R2T1 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991914 Sample Accession: GSM3462872 ID: 303462872 13693. U2OS H2B-GFP Halo-CTCF Mitotic Cell ATAC-seq R2T2 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991913 Sample Accession: GSM3462871 ID: 303462871 13694. U2OS H2B-GFP Halo-CTCF Mitotic Cell ATAC-seq R2T3 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991912 Sample Accession: GSM3462870 ID: 303462870 13695. U2OS H2B-GFP Halo-CTCF Mitotic Cell ATAC-seq R2T4 Organism: Homo sapiens Source name: U2OS Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991911 Sample Accession: GSM3462869 ID: 303462869 13696. HFF Mitotic Chromatin ATAC-seq R1T1 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991910 Sample Accession: GSM3462868 ID: 303462868 13697. HFF Mitotic Chromatin ATAC-seq R1T2 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991909 Sample Accession: GSM3462867 ID: 303462867 13698. HFF Mitotic Chromatin ATAC-seq R1T3 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991908 Sample Accession: GSM3462866 ID: 303462866 13699. HFF Mitotic Chromatin ATAC-seq R1T4 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991907 Sample Accession: GSM3462865 ID: 303462865 13700. HFF Mitotic Chromatin ATAC-seq R2T1 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991906 Sample Accession: GSM3462864 ID: 303462864 13701. HFF Mitotic Chromatin ATAC-seq R2T2 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991905 Sample Accession: GSM3462863 ID: 303462863 13702. HFF Mitotic Chromatin ATAC-seq R2T3 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991904 Sample Accession: GSM3462862 ID: 303462862 13703. HFF Mitotic Chromatin ATAC-seq R2T4 Organism: Homo sapiens Source name: HFF Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991903 Sample Accession: GSM3462861 ID: 303462861 13704. HeLa Non Sync ATAC-seq R1T3 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991900 Sample Accession: GSM3462858 ID: 303462858 13705. HeLa Non Sync ATAC-seq R1T4 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991899 Sample Accession: GSM3462857 ID: 303462857 13706. HeLa Mitotic Cell ATAC-seq R1T1 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991898 Sample Accession: GSM3462856 ID: 303462856 13707. HeLa Mitotic Cell ATAC-seq R1T2 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991897 Sample Accession: GSM3462855 ID: 303462855 13708. HeLa Mitotic Cell ATAC-seq R1T3 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991896 Sample Accession: GSM3462854 ID: 303462854 13709. HeLa Mitotic Cell ATAC-seq R1T4 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991895 Sample Accession: GSM3462853 ID: 303462853 13710. HeLa Mitotic Chromatin (fresh) ATAC-seq R1T1 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991894 Sample Accession: GSM3462852 ID: 303462852 13711. HeLa Mitotic Chromatin (fresh) ATAC-seq R1T2 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991893 Sample Accession: GSM3462851 ID: 303462851 13712. HeLa Mitotic Chromatin (fresh) ATAC-seq R1T3 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991892 Sample Accession: GSM3462850 ID: 303462850 13713. HeLa Mitotic Chromatin (fresh) ATAC-seq R1T4 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991891 Sample Accession: GSM3462849 ID: 303462849 13714. HeLa Mitotic Chromatin (frozen) ATAC-seq R1T1 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991890 Sample Accession: GSM3462848 ID: 303462848 13715. HeLa Mitotic Chromatin (frozen) ATAC-seq R1T2 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991889 Sample Accession: GSM3462847 ID: 303462847 13716. HeLa Mitotic Chromatin (frozen) ATAC-seq R1T3 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991888 Sample Accession: GSM3462846 ID: 303462846 13717. HeLa Mitotic Chromatin (frozen) ATAC-seq R1T4 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991887 Sample Accession: GSM3462845 ID: 303462845 13718. HeLa Non Sync ATAC-seq R2T1 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991886 Sample Accession: GSM3462844 ID: 303462844 13719. HeLa Non Sync ATAC-seq R2T2 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991885 Sample Accession: GSM3462843 ID: 303462843 13720. HeLa Mitotic Cell ATAC-seq R2T3 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991882 Sample Accession: GSM3462840 ID: 303462840 13721. HeLa Mitotic Cell ATAC-seq R2T4 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991881 Sample Accession: GSM3462839 ID: 303462839 13722. HeLa Mitotic Chromatin (frozen) ATAC-seq R2T3 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991878 Sample Accession: GSM3462836 ID: 303462836 13723. HeLa Mitotic Chromatin (frozen) ATAC-seq R2T4 Organism: Homo sapiens Source name: HeLa-S3 cells Platform: GPL20301 Series: GSE121840 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4991877 Sample Accession: GSM3462835 ID: 303462835 13724. ATAC-seq p63KO Day 7 - Replicate 2 Organism: Homo sapiens Source name: Surface Ectoderm cells Platform: GPL18573 Series: GSE119996 GSE119997 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4690242 Sample Accession: GSM3391517 ID: 303391517 13725. ATAC-seq p63KO Day 7 - Replicate 1 Organism: Homo sapiens Source name: Surface Ectoderm cells Platform: GPL18573 Series: GSE119996 GSE119997 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4690241 Sample Accession: GSM3391516 ID: 303391516 13726. ATAC-seq WT Day 7 - Replicate 2 Organism: Homo sapiens Source name: Surface Ectoderm cells Platform: GPL18573 Series: GSE119996 GSE119997 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4690240 Sample Accession: GSM3391515 ID: 303391515 13727. ATAC-seq WT Day 7 - Replicate 1 Organism: Homo sapiens Source name: Surface Ectoderm cells Platform: GPL18573 Series: GSE119996 GSE119997 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4690239 Sample Accession: GSM3391514 ID: 303391514 13728. ATAC-seq p63GOF Day 0 - Replicate 2 Organism: Homo sapiens Source name: human Embryonic Stem Cells Platform: GPL18573 Series: GSE119996 GSE119997 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4690238 Sample Accession: GSM3391513 ID: 303391513 13729. ATAC-seq p63GOF Day 0 - Replicate 1 Organism: Homo sapiens Source name: human Embryonic Stem Cells Platform: GPL18573 Series: GSE119996 GSE119997 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4690237 Sample Accession: GSM3391512 ID: 303391512 13730. ATAC-seq WT Day 0 - Replicate 2 Organism: Homo sapiens Source name: human Embryonic Stem Cells Platform: GPL18573 Series: GSE119996 GSE119997 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4690236 Sample Accession: GSM3391511 ID: 303391511 13731. ATAC-seq WT Day 0 - Replicate 1 Organism: Homo sapiens Source name: human Embryonic Stem Cells Platform: GPL18573 Series: GSE119996 GSE119997 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4690235 Sample Accession: GSM3391510 ID: 303391510 13732. sh-ALKBH1-6-2-ATAC Organism: Homo sapiens Source name: Patient-Derived Glioblastoma Stem Cell Platform: GPL20301 Series: GSE118092 GSE118093 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3318nnn/GSM3318544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4505720 Sample Accession: GSM3318544 ID: 303318544 13733. sh-ALKBH1-6-1-ATAC Organism: Homo sapiens Source name: Patient-Derived Glioblastoma Stem Cell Platform: GPL20301 Series: GSE118092 GSE118093 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3318nnn/GSM3318543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4505719 Sample Accession: GSM3318543 ID: 303318543 13734. sh-ALKBH1-4-2-ATAC Organism: Homo sapiens Source name: Patient-Derived Glioblastoma Stem Cell Platform: GPL20301 Series: GSE118092 GSE118093 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3318nnn/GSM3318542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4505718 Sample Accession: GSM3318542 ID: 303318542 13735. sh-ALKBH1-4-1-ATAC Organism: Homo sapiens Source name: Patient-Derived Glioblastoma Stem Cell Platform: GPL20301 Series: GSE118092 GSE118093 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3318nnn/GSM3318541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4505717 Sample Accession: GSM3318541 ID: 303318541 13736. NT-2-ATAC Organism: Homo sapiens Source name: Patient-Derived Glioblastoma Stem Cell Platform: GPL20301 Series: GSE118092 GSE118093 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3318nnn/GSM3318540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4505716 Sample Accession: GSM3318540 ID: 303318540 13737. NT-1-ATAC Organism: Homo sapiens Source name: Patient-Derived Glioblastoma Stem Cell Platform: GPL20301 Series: GSE118092 GSE118093 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3318nnn/GSM3318539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4505715 Sample Accession: GSM3318539 ID: 303318539 13738. K562 cell ATAC-seq replicate 2 Organism: Homo sapiens Source name: K562 cells Platform: GPL18573 Series: GSE121993 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3452nnn/GSM3452727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4958126 Sample Accession: GSM3452727 ID: 303452727 13739. K562 cell ATAC-seq replicate 1 Organism: Homo sapiens Source name: K562 cells Platform: GPL18573 Series: GSE121993 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3452nnn/GSM3452726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4958125 Sample Accession: GSM3452726 ID: 303452726 13740. Sd ATAC-seq rep 4 Organism: Mus musculus Source name: Sd tailbuds ATAC-seq Platform: GPL17021 Series: GSE108802 GSE108804 FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2913nnn/GSM2913376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3534248 Sample Accession: GSM2913376 ID: 302913376 13741. Sd ATAC-seq rep 3 Organism: Mus musculus Source name: Sd tailbuds ATAC-seq Platform: GPL17021 Series: GSE108802 GSE108804 FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2913nnn/GSM2913375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3534247 Sample Accession: GSM2913375 ID: 302913375 13742. Sd ATAC-seq rep 2 Organism: Mus musculus Source name: Sd tailbuds ATAC-seq Platform: GPL17021 Series: GSE108802 GSE108804 FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2913nnn/GSM2913374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3534246 Sample Accession: GSM2913374 ID: 302913374 13743. Sd ATAC-seq rep 1 Organism: Mus musculus Source name: Sd tailbuds ATAC-seq Platform: GPL17021 Series: GSE108802 GSE108804 FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2913nnn/GSM2913373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3534245 Sample Accession: GSM2913373 ID: 302913373 13744. WT ATAC-seq rep 4 Organism: Mus musculus Source name: WT tailbuds ATAC-seq Platform: GPL17021 Series: GSE108802 GSE108804 FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2913nnn/GSM2913372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3534244 Sample Accession: GSM2913372 ID: 302913372 13745. WT ATAC-seq rep 3 Organism: Mus musculus Source name: WT tailbuds ATAC-seq Platform: GPL17021 Series: GSE108802 GSE108804 FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2913nnn/GSM2913371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3534243 Sample Accession: GSM2913371 ID: 302913371 13746. WT ATAC-seq rep 2 Organism: Mus musculus Source name: WT tailbuds ATAC-seq Platform: GPL17021 Series: GSE108802 GSE108804 FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2913nnn/GSM2913370/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3534242 Sample Accession: GSM2913370 ID: 302913370 13747. WT ATAC-seq rep 1 Organism: Mus musculus Source name: WT tailbuds ATAC-seq Platform: GPL17021 Series: GSE108802 GSE108804 FTP download: GEO (BED, BROADPEAK, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2913nnn/GSM2913369/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3534241 Sample Accession: GSM2913369 ID: 302913369 13748. illu-HH1-3 Organism: Homo sapiens Source name: YB5 colon cancer cell line Platform: GPL16791 Series: GSE113608 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3991265 Sample Accession: GSM3110084 ID: 303110084 13749. illu-HH1-2 Organism: Homo sapiens Source name: YB5 colon cancer cell line Platform: GPL16791 Series: GSE113608 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3991264 Sample Accession: GSM3110083 ID: 303110083 13750. illu-HH1-1 Organism: Homo sapiens Source name: YB5 colon cancer cell line Platform: GPL16791 Series: GSE113608 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3991263 Sample Accession: GSM3110082 ID: 303110082 13751. illu-ctl-3 Organism: Homo sapiens Source name: YB5 colon cancer cell line Platform: GPL16791 Series: GSE113608 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3991262 Sample Accession: GSM3110081 ID: 303110081 13752. illu-ctl-2 Organism: Homo sapiens Source name: YB5 colon cancer cell line Platform: GPL16791 Series: GSE113608 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3991261 Sample Accession: GSM3110080 ID: 303110080 13753. illu-ctl-1 Organism: Homo sapiens Source name: YB5 colon cancer cell line Platform: GPL16791 Series: GSE113608 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3991260 Sample Accession: GSM3110079 ID: 303110079 13754. ATAC-seq_MEF_Ubc9-KO_rep3 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4219806 Sample Accession: GSM3191762 ID: 303191762 13755. ATAC-seq_MEF_Ubc9-KO_rep2 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4219805 Sample Accession: GSM3191761 ID: 303191761 13756. ATAC-seq_MEF_Ubc9-KO_rep1 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3191nnn/GSM3191760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4219804 Sample Accession: GSM3191760 ID: 303191760 13757. ATAC-seq_MEF_Ubc9-WT_rep2 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4219803 Sample Accession: GSM3191759 ID: 303191759 13758. ATAC-seq_MEF_Ubc9-WT_rep1 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3191nnn/GSM3191758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4219802 Sample Accession: GSM3191758 ID: 303191758 13759. ATAC-seq_D4_shUbc9_rep3 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2831365 Sample Accession: GSM2629996 ID: 302629996 13760. ATAC-seq_D4_shUbc9_rep2 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2831364 Sample Accession: GSM2629995 ID: 302629995 13761. ATAC-seq_D4_shUbc9_rep1 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2629nnn/GSM2629994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2831363 Sample Accession: GSM2629994 ID: 302629994 13762. ATAC-seq_D4_shCtrl_rep3 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2831362 Sample Accession: GSM2629993 ID: 302629993 13763. ATAC-seq_D4_shCtrl_rep2 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2831361 Sample Accession: GSM2629992 ID: 302629992 13764. ATAC-seq_D4_shCtrl_rep1 Organism: Mus musculus Source name: mouse embryonic fibroblast cells E13.5 Platform: GPL21103 Series: GSE99009 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2629nnn/GSM2629991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2831360 Sample Accession: GSM2629991 ID: 302629991 13765. ATAC_I-BRD9-4hr Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928888 Sample Accession: GSM3444406 ID: 303444406 13766. ATAC_I-BRD9-1hr Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928887 Sample Accession: GSM3444405 ID: 303444405 13767. ATAC_I-BRD9-30min Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928886 Sample Accession: GSM3444404 ID: 303444404 13768. ATAC_I-BRD9-0min Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928885 Sample Accession: GSM3444403 ID: 303444403 13769. ATAC_DMSO-4hr Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928884 Sample Accession: GSM3444402 ID: 303444402 13770. ATAC_DMSO-1hr Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444401/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928883 Sample Accession: GSM3444401 ID: 303444401 13771. ATAC_DMSO-30min Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928882 Sample Accession: GSM3444400 ID: 303444400 13772. ATAC_DMSO-0min Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928881 Sample Accession: GSM3444399 ID: 303444399 13773. input_iBRD9 Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928880 Sample Accession: GSM3444398 ID: 303444398 13774. input_untreated Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928879 Sample Accession: GSM3444397 ID: 303444397 13775. BRD9_iBRD9 Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928878 Sample Accession: GSM3444396 ID: 303444396 13776. BRD9_untreated Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928877 Sample Accession: GSM3444395 ID: 303444395 13777. GFP_GLTSCR1L_iBRD9 Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928876 Sample Accession: GSM3444394 ID: 303444394 13778. GFP_GLTSCR1L_untreated Organism: Homo sapiens Source name: HeLa Platform: GPL18573 Series: GSE121351 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3444nnn/GSM3444393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4928875 Sample Accession: GSM3444393 ID: 303444393 13779. mouse_atac_basket_2 Organism: Mus musculus Source name: ATAC-seq using nuclei from specific cell types Platform: GPL19057 Series: GSE101914 GSE101918 FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899288 Sample Accession: GSM3084593 ID: 303084593 13780. mouse_atac_basket_1 Organism: Mus musculus Source name: ATAC-seq using nuclei from specific cell types Platform: GPL19057 Series: GSE101914 GSE101918 FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899287 Sample Accession: GSM3084592 ID: 303084592 13781. mouse_atac_granule_2 Organism: Mus musculus Source name: ATAC-seq using nuclei from specific cell types Platform: GPL19057 Series: GSE101914 GSE101918 FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899286 Sample Accession: GSM3084591 ID: 303084591 13782. mouse_atac_granule_1 Organism: Mus musculus Source name: ATAC-seq using nuclei from specific cell types Platform: GPL19057 Series: GSE101914 GSE101918 FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899285 Sample Accession: GSM3084590 ID: 303084590 13783. human_atac_pk_basket Organism: Homo sapiens Source name: ATAC-seq using nuclei from specific cell types Platform: GPL18573 Series: GSE101912 GSE101918 FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899281 Sample Accession: GSM3084581 ID: 303084581 13784. human_atac_xk_basket Organism: Homo sapiens Source name: ATAC-seq using nuclei from specific cell types Platform: GPL18573 Series: GSE101912 GSE101918 FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899280 Sample Accession: GSM3084580 ID: 303084580 13785. human_atac_pk_granule Organism: Homo sapiens Source name: ATAC-seq using nuclei from specific cell types Platform: GPL18573 Series: GSE101912 GSE101918 FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899279 Sample Accession: GSM3084579 ID: 303084579 13786. human_atac_xk_granule Organism: Homo sapiens Source name: ATAC-seq using nuclei from specific cell types Platform: GPL18573 Series: GSE101912 GSE101918 FTP download: GEO (TDF, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899278 Sample Accession: GSM3084578 ID: 303084578 13787. L3_rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Undamaged Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747066/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104592 Sample Accession: GSM2747066 ID: 302747066 13788. L3_rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Undamaged Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104591 Sample Accession: GSM2747065 ID: 302747065 13789. 25h_reg_rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Regenerating Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747064/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104590 Sample Accession: GSM2747064 ID: 302747064 13790. 25h_reg_rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Regenerating Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747063/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104589 Sample Accession: GSM2747063 ID: 302747063 13791. 25h_ctrl_rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Undamaged Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747062/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104588 Sample Accession: GSM2747062 ID: 302747062 13792. 25h_ctrl_rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Undamaged Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104587 Sample Accession: GSM2747061 ID: 302747061 13793. 15h_reg_rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Regenerating Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104586 Sample Accession: GSM2747060 ID: 302747060 13794. 15h_reg_rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Regenerating Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104585 Sample Accession: GSM2747059 ID: 302747059 13795. 15h_ctrl_rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Undamaged Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104584 Sample Accession: GSM2747058 ID: 302747058 13796. 15h_ctrl_rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Undamaged Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104583 Sample Accession: GSM2747057 ID: 302747057 13797. 0h_reg_rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Regenerating Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104582 Sample Accession: GSM2747056 ID: 302747056 13798. 0h_reg_rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Regenerating Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104581 Sample Accession: GSM2747055 ID: 302747055 13799. 0h_ctrl_rep2 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Undamaged Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104580 Sample Accession: GSM2747054 ID: 302747054 13800. 0h_ctrl_rep1 [ATAC-Seq] Organism: Drosophila melanogaster Source name: Undamaged Wing Disc Platform: GPL17275 Series: GSE102839 GSE102841 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2747nnn/GSM2747053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3104579 Sample Accession: GSM2747053 ID: 302747053 13801. lung: NCI-H2227 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514456 Sample Accession: GSM3321015 ID: 303321015 13802. lung: NCI-H2171 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514455 Sample Accession: GSM3321014 ID: 303321014 13803. lung: NCI-H1963 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514454 Sample Accession: GSM3321013 ID: 303321013 13804. lung: NCI-H1436 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514453 Sample Accession: GSM3321012 ID: 303321012 13805. lung: NCI-H524 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514452 Sample Accession: GSM3321011 ID: 303321011 13806. prostate: ARCB6 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514451 Sample Accession: GSM3321010 ID: 303321010 13807. prostate: ARCB5 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514450 Sample Accession: GSM3321009 ID: 303321009 13808. prostate: ARCB4 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514449 Sample Accession: GSM3321008 ID: 303321008 13809. prostate: PACB5 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514448 Sample Accession: GSM3321007 ID: 303321007 13810. prostate: PACB3 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514447 Sample Accession: GSM3321006 ID: 303321006 13811. prostate: PACB1 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321005/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514446 Sample Accession: GSM3321005 ID: 303321005 13812. prostate: ACB5 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514445 Sample Accession: GSM3321004 ID: 303321004 13813. prostate: ACB4 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514444 Sample Accession: GSM3321003 ID: 303321003 13814. prostate: ACB3 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514443 Sample Accession: GSM3321002 ID: 303321002 13815. prostate: ACB2 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514442 Sample Accession: GSM3321001 ID: 303321001 13816. prostate: NCI-H660 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3321nnn/GSM3321000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514441 Sample Accession: GSM3321000 ID: 303321000 13817. prostate: MSKCC-EF1 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514440 Sample Accession: GSM3320999 ID: 303320999 13818. lung: NHBE5-PARCB ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514439 Sample Accession: GSM3320998 ID: 303320998 13819. lung: NHBE4-PARCB2 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514438 Sample Accession: GSM3320997 ID: 303320997 13820. lung: NHBE4-PARCB1 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514437 Sample Accession: GSM3320996 ID: 303320996 13821. lung: NHBE1-PARCB2 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514436 Sample Accession: GSM3320995 ID: 303320995 13822. lung: NHBE1-PARCB1 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514435 Sample Accession: GSM3320994 ID: 303320994 13823. prostate: PARCB8 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514434 Sample Accession: GSM3320993 ID: 303320993 13824. prostate: PARCB6 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514433 Sample Accession: GSM3320992 ID: 303320992 13825. prostate: PARCB3 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514432 Sample Accession: GSM3320991 ID: 303320991 13826. prostate: PARCB1 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514431 Sample Accession: GSM3320990 ID: 303320990 13827. lung: NHBE5 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514430 Sample Accession: GSM3320989 ID: 303320989 13828. lung: NHBE4 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514429 Sample Accession: GSM3320988 ID: 303320988 13829. lung: NHBE1 ATAC-seq Organism: Homo sapiens Source name: lung Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514428 Sample Accession: GSM3320987 ID: 303320987 13830. prostate: Basal3 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514427 Sample Accession: GSM3320986 ID: 303320986 13831. prostate: Basal2 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514426 Sample Accession: GSM3320985 ID: 303320985 13832. prostate: Basal1 ATAC-seq Organism: Homo sapiens Source name: prostate Platform: GPL11154 Series: GSE118204 GSE118207 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3320nnn/GSM3320984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4514425 Sample Accession: GSM3320984 ID: 303320984 13833. RNAseq_POD5_SSC2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899272 Sample Accession: GSM3084570 ID: 303084570 13834. RNAseq_POD5_SSC1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899271 Sample Accession: GSM3084569 ID: 303084569 13835. RNAseq_POD5_OP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899270 Sample Accession: GSM3084568 ID: 303084568 13836. RNAseq_POD5_OP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899269 Sample Accession: GSM3084567 ID: 303084567 13837. RNAseq_POD5_BCSP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899268 Sample Accession: GSM3084566 ID: 303084566 13838. RNAseq_POD5_BCSP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899267 Sample Accession: GSM3084565 ID: 303084565 13839. RNAseq_POD15_Fx_SSC2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899266 Sample Accession: GSM3084564 ID: 303084564 13840. RNAseq_POD15_Fx_SSC1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899265 Sample Accession: GSM3084563 ID: 303084563 13841. RNAseq_POD15_Fx_OP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899264 Sample Accession: GSM3084562 ID: 303084562 13842. RNAseq_POD15_Fx_OP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899263 Sample Accession: GSM3084561 ID: 303084561 13843. RNAseq_POD15_Fx_BCSP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899262 Sample Accession: GSM3084560 ID: 303084560 13844. RNAseq_POD15_Fx_BCSP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899261 Sample Accession: GSM3084559 ID: 303084559 13845. RNAseq_POD15_DO_SSC2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899260 Sample Accession: GSM3084558 ID: 303084558 13846. RNAseq_POD15_DO_SSC1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899259 Sample Accession: GSM3084557 ID: 303084557 13847. RNAseq_POD15_DO_OP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084556/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899258 Sample Accession: GSM3084556 ID: 303084556 13848. RNAseq_POD15_DO_OP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899257 Sample Accession: GSM3084555 ID: 303084555 13849. RNAseq_POD15_DO_BCSP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899256 Sample Accession: GSM3084554 ID: 303084554 13850. RNAseq_POD15_DO_BCSP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899255 Sample Accession: GSM3084553 ID: 303084553 13851. RNAseq_POD10_Fx_SSC2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899254 Sample Accession: GSM3084552 ID: 303084552 13852. RNAseq_POD10_Fx_SSC1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899253 Sample Accession: GSM3084551 ID: 303084551 13853. RNAseq_POD10_Fx_OP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899252 Sample Accession: GSM3084550 ID: 303084550 13854. RNAseq_POD10_Fx_OP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899251 Sample Accession: GSM3084549 ID: 303084549 13855. RNAseq_POD10_Fx_BCSP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899250 Sample Accession: GSM3084548 ID: 303084548 13856. RNAseq_POD10_Fx_BCSP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899249 Sample Accession: GSM3084547 ID: 303084547 13857. RNAseq_POD10_DO_SSC2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899248 Sample Accession: GSM3084546 ID: 303084546 13858. RNAseq_POD10_DO_SSC1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899247 Sample Accession: GSM3084545 ID: 303084545 13859. RNAseq_POD10_DO_OP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899246 Sample Accession: GSM3084544 ID: 303084544 13860. RNAseq_POD10_DO_OP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899245 Sample Accession: GSM3084543 ID: 303084543 13861. RNAseq_POD10_DO_BCSP2 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899244 Sample Accession: GSM3084542 ID: 303084542 13862. RNAseq_POD10_DO_BCSP1 Organism: Mus musculus Source name: Mouse mandible Platform: GPL19057 Series: GSE104473 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3084nnn/GSM3084541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3899243 Sample Accession: GSM3084541 ID: 303084541 13863. ATAC-Seq AW6 Organism: Homo sapiens Source name: human embryonic stem cell_Activin A_and_Wnt3a Platform: GPL16791 Series: GSE113047 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3094nnn/GSM3094771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3927671 Sample Accession: GSM3094771 ID: 303094771 13864. ATAC-Seq W6 Organism: Homo sapiens Source name: human embryonic stem cell_Wnt3a Platform: GPL16791 Series: GSE113047 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3094nnn/GSM3094770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3927670 Sample Accession: GSM3094770 ID: 303094770 13865. ATAC-Seq A6 Organism: Homo sapiens Source name: human embryonic stem cell_Activin A Platform: GPL16791 Series: GSE113047 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3094nnn/GSM3094769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3927669 Sample Accession: GSM3094769 ID: 303094769 13866. ATAC-Seq Control Organism: Homo sapiens Source name: human embryonic stem cell_control Platform: GPL16791 Series: GSE113047 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3094nnn/GSM3094768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3927668 Sample Accession: GSM3094768 ID: 303094768 13867. ATAC-Seq of BA treated arr1,10,12 roots; replicate 2 Organism: Arabidopsis thaliana Source name: arr1,10,12 roots treated for 45 with benzyl adenine Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348144 Sample Accession: GSM3227530 ID: 303227530 13868. ATAC-Seq of BA treated arr1,10,12 roots; replicate 1 Organism: Arabidopsis thaliana Source name: arr1,10,12 roots treated for 45 with benzyl adenine Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348138 Sample Accession: GSM3227529 ID: 303227529 13869. ATAC-Seq of control treated arr1,10,12 roots; replicate 2 Organism: Arabidopsis thaliana Source name: arr1,10,12 roots treated for 45 with control Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348143 Sample Accession: GSM3227528 ID: 303227528 13870. ATAC-Seq of control treated arr1,10,12 roots; replicate 1 Organism: Arabidopsis thaliana Source name: arr1,10,12 roots treated for 45 with control Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348151 Sample Accession: GSM3227527 ID: 303227527 13871. ATAC-Seq of BA treated shoots; replicate 2 Organism: Arabidopsis thaliana Source name: Shoots treated for 45 minutes with benzyl adenine Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348140 Sample Accession: GSM3227526 ID: 303227526 13872. ATAC-Seq of BA treated shoots; replicate 1 Organism: Arabidopsis thaliana Source name: Shoots treated for 45 minutes with benzyl adenine Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348148 Sample Accession: GSM3227525 ID: 303227525 13873. ATAC-Seq of control treated shoots; replicate 2 Organism: Arabidopsis thaliana Source name: Shoots treated for 45 minutes with control Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348139 Sample Accession: GSM3227524 ID: 303227524 13874. ATAC-Seq of control treated shoots; replicate 1 Organism: Arabidopsis thaliana Source name: Shoots treated for 45 minutes with control Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227523/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348137 Sample Accession: GSM3227523 ID: 303227523 13875. ATAC-Seq of BA treated roots; replicate 4 Organism: Arabidopsis thaliana Source name: Roots treated for 45 minutes with benzyl adenine Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348149 Sample Accession: GSM3227522 ID: 303227522 13876. ATAC-Seq of BA treated roots; replicate 3 Organism: Arabidopsis thaliana Source name: Roots treated for 45 minutes with benzyl adenine Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348146 Sample Accession: GSM3227521 ID: 303227521 13877. ATAC-Seq of BA treated roots; replicate 2 Organism: Arabidopsis thaliana Source name: Roots treated for 45 minutes with benzyl adenine Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348150 Sample Accession: GSM3227520 ID: 303227520 13878. ATAC-Seq of BA treated roots; replicate 1 Organism: Arabidopsis thaliana Source name: Roots treated for 45 minutes with benzyl adenine Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227519/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348142 Sample Accession: GSM3227519 ID: 303227519 13879. ATAC-Seq of control treated roots; replicate 4 Organism: Arabidopsis thaliana Source name: Roots treated for 45 minutes with control Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348152 Sample Accession: GSM3227518 ID: 303227518 13880. ATAC-Seq of control treated roots; replicate 3 Organism: Arabidopsis thaliana Source name: Roots treated for 45 minutes with control Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348145 Sample Accession: GSM3227517 ID: 303227517 13881. ATAC-Seq of control treated roots; replicate 2 Organism: Arabidopsis thaliana Source name: Roots treated for 45 minutes with control Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227516/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348147 Sample Accession: GSM3227516 ID: 303227516 13882. ATAC-Seq of control treated roots; replicate 1 Organism: Arabidopsis thaliana Source name: Roots treated for 45 minutes with control Platform: GPL21785 Series: GSE116287 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3227nnn/GSM3227515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3348141 Sample Accession: GSM3227515 ID: 303227515 13883. 1703_PC_pos [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3150nnn/GSM3150004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112881 Sample Accession: GSM3150004 ID: 303150004 13884. 1701_PC_pos [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3150nnn/GSM3150003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112880 Sample Accession: GSM3150003 ID: 303150003 13885. 1699_PC_pos [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3150nnn/GSM3150002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112879 Sample Accession: GSM3150002 ID: 303150002 13886. 1702_PC_neg [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3150nnn/GSM3150001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112878 Sample Accession: GSM3150001 ID: 303150001 13887. 1700_PC_neg [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3150nnn/GSM3150000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112877 Sample Accession: GSM3150000 ID: 303150000 13888. 1698_PC_neg [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3149nnn/GSM3149999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112876 Sample Accession: GSM3149999 ID: 303149999 13889. 1703_nB_pos [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3149nnn/GSM3149998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112875 Sample Accession: GSM3149998 ID: 303149998 13890. 1701_nB_pos [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3149nnn/GSM3149997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112874 Sample Accession: GSM3149997 ID: 303149997 13891. 1699_nB_pos [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3149nnn/GSM3149996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112873 Sample Accession: GSM3149996 ID: 303149996 13892. 1702_nB_neg [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3149nnn/GSM3149995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112872 Sample Accession: GSM3149995 ID: 303149995 13893. 1700_nB_neg [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3149nnn/GSM3149994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112871 Sample Accession: GSM3149994 ID: 303149994 13894. 1698_nB_neg [ATAC-Seq] Organism: Mus musculus Source name: spleen Platform: GPL17021 Series: GSE114774 GSE114777 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3149nnn/GSM3149993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4112870 Sample Accession: GSM3149993 ID: 303149993 13895. ATAC-seq_P7_Kidney_EC_R2 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from Kidney (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791749 Sample Accession: GSM3040876 ID: 303040876 13896. ATAC-seq_P7_Kidney_EC_R1 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from Kidney (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791748 Sample Accession: GSM3040875 ID: 303040875 13897. ATAC-seq_P7_Lung_EC_R2 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from Lung (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791747 Sample Accession: GSM3040874 ID: 303040874 13898. ATAC-seq_P7_Lung_EC_R1 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from Lung (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791746 Sample Accession: GSM3040873 ID: 303040873 13899. ATAC-seq_P7_Liver_EC_R2 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from Liver (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791745 Sample Accession: GSM3040872 ID: 303040872 13900. ATAC-seq_P7_Liver_EC_R1 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from Liver (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791744 Sample Accession: GSM3040871 ID: 303040871 13901. ATAC-seq_P7_Brain_EC_R3 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from brain (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791741 Sample Accession: GSM3040868 ID: 303040868 13902. ATAC-seq_P7_Brain_EC_R2 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from brain (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791740 Sample Accession: GSM3040867 ID: 303040867 13903. ATAC-seq_P7_Brain_EC_R1 Organism: Mus musculus Source name: P7 GFP-positive sorted cells from brain (vascular ECs) Platform: GPL19057 Series: GSE111839 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3791739 Sample Accession: GSM3040866 ID: 303040866 13904. ATAC-seq Mphase rep3_NextSeq Organism: Homo sapiens Source name: ATAC-seq with synchronized M-phase T98G cells, rep3 Platform: GPL18573 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358782 Sample Accession: GSM2838746 ID: 302838746 13905. ATAC-seq Mphase rep2_NextSeq Organism: Homo sapiens Source name: ATAC-seq with synchronized M-phase T98G cells, rep2 Platform: GPL18573 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358781 Sample Accession: GSM2838745 ID: 302838745 13906. ATAC-seq Mphase rep1_NextSeq Organism: Homo sapiens Source name: ATAC-seq with synchronized M-phase T98G cells, rep1 Platform: GPL18573 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358780 Sample Accession: GSM2838744 ID: 302838744 13907. ATAC-seq Mphase rep3_HiSeq Organism: Homo sapiens Source name: ATAC-seq with synchronized M-phase T98G cells, rep3 Platform: GPL16791 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358779 Sample Accession: GSM2838743 ID: 302838743 13908. ATAC-seq Mphase rep2_HiSeq Organism: Homo sapiens Source name: ATAC-seq with synchronized M-phase T98G cells, rep2 Platform: GPL16791 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358778 Sample Accession: GSM2838742 ID: 302838742 13909. ATAC-seq Mphase rep1_HiSeq Organism: Homo sapiens Source name: ATAC-seq with synchronized M-phase T98G cells, rep1 Platform: GPL16791 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358777 Sample Accession: GSM2838741 ID: 302838741 13910. ATAC-seq G1 rep3 Organism: Homo sapiens Source name: ATAC-seq with synchronized G1 T98G cells, rep3 Platform: GPL16791 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358776 Sample Accession: GSM2838740 ID: 302838740 13911. ATAC-seq G1 rep2 Organism: Homo sapiens Source name: ATAC-seq with synchronized G1 T98G cells, rep2 Platform: GPL16791 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358775 Sample Accession: GSM2838739 ID: 302838739 13912. ATAC-seq G1 rep1 Organism: Homo sapiens Source name: ATAC-seq with synchronized G1 T98G cells, rep1 Platform: GPL16791 Series: GSE106482 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3358774 Sample Accession: GSM2838738 ID: 302838738 13913. Chd7iKO 5 (M5) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338227 Sample Accession: GSM3243603 ID: 303243603 13914. Chd7iKO 4 (M4) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338226 Sample Accession: GSM3243602 ID: 303243602 13915. Chd7iKO 3 (M3) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338225 Sample Accession: GSM3243601 ID: 303243601 13916. Chd7iKO 2 (M2) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338224 Sample Accession: GSM3243600 ID: 303243600 13917. Chd7iKO 1 (M1) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338223 Sample Accession: GSM3243599 ID: 303243599 13918. Control 5 (C5) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338222 Sample Accession: GSM3243598 ID: 303243598 13919. Control 4 (C4) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338221 Sample Accession: GSM3243597 ID: 303243597 13920. Control 3 (C3) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338220 Sample Accession: GSM3243596 ID: 303243596 13921. Control 2 (C2) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338219 Sample Accession: GSM3243595 ID: 303243595 13922. Control 1 (C1) ATAC-Seq Organism: Mus musculus Source name: O4+ cells Platform: GPL13112 Series: GSE116598 GSE116601 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3243nnn/GSM3243594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4338218 Sample Accession: GSM3243594 ID: 303243594 13923. whole L3 worm ATAC-seq rep2 Organism: Caenorhabditis elegans Source name: whole worms Platform: GPL19757 Series: GSE103177 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2756nnn/GSM2756647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3141083 Sample Accession: GSM2756647 ID: 302756647 13924. whole L3 worm ATAC-seq rep1 Organism: Caenorhabditis elegans Source name: whole worms Platform: GPL19757 Series: GSE103177 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2756nnn/GSM2756646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3141082 Sample Accession: GSM2756646 ID: 302756646 13925. gAtac_rluc3: gonad ATAC-seq rep1 Organism: Caenorhabditis elegans Source name: worm gonads Platform: GPL22765 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4029338 Sample Accession: GSM3127934 ID: 303127934 13926. gAtac_rluc2: gonad ATAC-seq rep1 Organism: Caenorhabditis elegans Source name: worm gonads Platform: GPL22765 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4029337 Sample Accession: GSM3127933 ID: 303127933 13927. gAtac_rluc1: gonad ATAC-seq rep1 Organism: Caenorhabditis elegans Source name: worm gonads Platform: GPL22765 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4029336 Sample Accession: GSM3127932 ID: 303127932 13928. s2 cell ATAC-seq rep2 Organism: Drosophila melanogaster Source name: S2 cells Platform: GPL19132 Series: GSE103177 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2756nnn/GSM2756641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3141077 Sample Accession: GSM2756641 ID: 302756641 13929. s2 cell ATAC-seq rep1 Organism: Drosophila melanogaster Source name: S2 cells Platform: GPL19132 Series: GSE103177 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2756nnn/GSM2756640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3141076 Sample Accession: GSM2756640 ID: 302756640 13930. HEK293T, NIH/3T3, A549 cells, sci-CAR ATAC-seq Organism: Homo sapiens; Mus musculus Source name: HEK293T, NIH/3T3, A549 cells Platform: GPL19415 Series: GSE117089 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3271nnn/GSM3271041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4389722 Sample Accession: GSM3271041 ID: 303271041 13931. SUPT16H ATAC-seq rep2 Organism: Homo sapiens Source name: SUPT16H ATAC-seq Platform: GPL18573 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2794538 Sample Accession: GSM2611324 ID: 302611324 13932. SUPT16H ATAC-seq rep1 Organism: Homo sapiens Source name: SUPT16H ATAC-seq Platform: GPL18573 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2794537 Sample Accession: GSM2611323 ID: 302611323 13933. SSRP1 ATAC-seq rep2 Organism: Homo sapiens Source name: SSRP1 ATAC-seq Platform: GPL18573 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2794536 Sample Accession: GSM2611322 ID: 302611322 13934. SSRP1 ATAC-seq rep1 Organism: Homo sapiens Source name: SSRP1 ATAC-seq Platform: GPL18573 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2794535 Sample Accession: GSM2611321 ID: 302611321 13935. mock ATAC-seq rep2 Organism: Homo sapiens Source name: mock ATAC-seq Platform: GPL18573 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2794534 Sample Accession: GSM2611320 ID: 302611320 13936. mock ATAC-seq rep1 Organism: Homo sapiens Source name: mock ATAC-seq Platform: GPL18573 Series: GSE98758 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2794533 Sample Accession: GSM2611319 ID: 302611319 13937. mouse kidney , sci-CAR ATAC-seq Organism: Mus musculus Source name: kidney Platform: GPL19057 Series: GSE117089 FTP download: GEO (CSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3271nnn/GSM3271045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4389726 Sample Accession: GSM3271045 ID: 303271045 13938. H1_day6_INN_2 (ATAC-Seq) Organism: Homo sapiens Source name: hESC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036770 Sample Accession: GSM2286657 ID: 302286657 13939. H1_day6_INN_1 (ATAC-Seq) Organism: Homo sapiens Source name: hESC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036769 Sample Accession: GSM2286656 ID: 302286656 13940. H1_day2_INN_2 (ATAC-Seq) Organism: Homo sapiens Source name: hESC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036768 Sample Accession: GSM2286655 ID: 302286655 13941. H1_day2_INN_1 (ATAC-Seq) Organism: Homo sapiens Source name: hESC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036767 Sample Accession: GSM2286654 ID: 302286654 13942. H1_day0_INN_2 (ATAC-Seq) Organism: Homo sapiens Source name: hESC Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036766 Sample Accession: GSM2286653 ID: 302286653 13943. H1_day0_INN_1 (ATAC-Seq) Organism: Homo sapiens Source name: hESC Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036765 Sample Accession: GSM2286652 ID: 302286652 13944. H1_day6_C_2 (ATAC-Seq) Organism: Homo sapiens Source name: hESC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036764 Sample Accession: GSM2286651 ID: 302286651 13945. H1_day6_C_1 (ATAC-Seq) Organism: Homo sapiens Source name: hESC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036763 Sample Accession: GSM2286650 ID: 302286650 13946. H1_day2_C_2 (ATAC-Seq) Organism: Homo sapiens Source name: hESC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036762 Sample Accession: GSM2286649 ID: 302286649 13947. H1_day2_C_1 (ATAC-Seq) Organism: Homo sapiens Source name: hESC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036761 Sample Accession: GSM2286648 ID: 302286648 13948. H1_day0_C_2 (ATAC-Seq) Organism: Homo sapiens Source name: hESC Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036760 Sample Accession: GSM2286647 ID: 302286647 13949. H1_day0_C_1 (ATAC-Seq) Organism: Homo sapiens Source name: hESC Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036759 Sample Accession: GSM2286646 ID: 302286646 13950. C15_day6_INN_2 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036758 Sample Accession: GSM2286645 ID: 302286645 13951. C15_day6_INN_1 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036757 Sample Accession: GSM2286644 ID: 302286644 13952. C15_day2_INN_2 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036756 Sample Accession: GSM2286643 ID: 302286643 13953. C15_day2_INN_1 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036755 Sample Accession: GSM2286642 ID: 302286642 13954. C15_day0_INN_2 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036754 Sample Accession: GSM2286641 ID: 302286641 13955. C15_day0_INN_1 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036753 Sample Accession: GSM2286640 ID: 302286640 13956. C15_day6_C_2 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036752 Sample Accession: GSM2286639 ID: 302286639 13957. C15_day6_C_1 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036751 Sample Accession: GSM2286638 ID: 302286638 13958. C15_day2_C_2 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036750 Sample Accession: GSM2286637 ID: 302286637 13959. C15_day2_C_1 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC-derived cells Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036749 Sample Accession: GSM2286636 ID: 302286636 13960. C15_day0_C_2 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036748 Sample Accession: GSM2286635 ID: 302286635 13961. C15_day0_C_1 (ATAC-Seq) Organism: Homo sapiens Source name: hiPSC Platform: GPL20301 Series: GSE85879 GSE85881 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2286nnn/GSM2286634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2036747 Sample Accession: GSM2286634 ID: 302286634 13962. SKMel-239_SIRT6.1-1_ATACseq Organism: Homo sapiens Source name: Cell culture Platform: GPL18573 Series: GSE102813 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3083nnn/GSM3083218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3893522 Sample Accession: GSM3083218 ID: 303083218 13963. SKMel-239_SIRT6.2-7_ATACseq Organism: Homo sapiens Source name: Cell culture Platform: GPL18573 Series: GSE102813 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3083nnn/GSM3083211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3893514 Sample Accession: GSM3083211 ID: 303083211 13964. SKMel-239_L-C-B_ATACseq Organism: Homo sapiens Source name: Cell culture Platform: GPL18573 Series: GSE102813 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3083nnn/GSM3083210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3893513 Sample Accession: GSM3083210 ID: 303083210 13965. WT_Log_0hrs_d_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555104 Sample Accession: GSM3333720 ID: 303333720 13966. WT_mother_40hrs_a_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555103 Sample Accession: GSM3333719 ID: 303333719 13967. FOB1_mother_40hrs_a_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555102 Sample Accession: GSM3333718 ID: 303333718 13968. UBR2_mother_40hrs_a_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555101 Sample Accession: GSM3333717 ID: 303333717 13969. SIR2_mother_40hrs_a_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555100 Sample Accession: GSM3333716 ID: 303333716 13970. FOB1_Log_0hrs_d_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555099 Sample Accession: GSM3333715 ID: 303333715 13971. WT_Log_0hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555098 Sample Accession: GSM3333714 ID: 303333714 13972. FOB1_Log_0hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555097 Sample Accession: GSM3333713 ID: 303333713 13973. UBR2_Log_0hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555096 Sample Accession: GSM3333712 ID: 303333712 13974. SIR2_Log_0hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555095 Sample Accession: GSM3333711 ID: 303333711 13975. WT_mother_20hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555094 Sample Accession: GSM3333710 ID: 303333710 13976. FOB1_mother_20hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555093 Sample Accession: GSM3333709 ID: 303333709 13977. UBR2_mother_20hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555092 Sample Accession: GSM3333708 ID: 303333708 13978. SIR2_mother_20hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555091 Sample Accession: GSM3333707 ID: 303333707 13979. UBR2_Log_0hrs_d_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555090 Sample Accession: GSM3333706 ID: 303333706 13980. WT_mother_40hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555088 Sample Accession: GSM3333705 ID: 303333705 13981. FOB1_mother_40hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555087 Sample Accession: GSM3333704 ID: 303333704 13982. UBR2_mother_40hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555086 Sample Accession: GSM3333703 ID: 303333703 13983. SIR2_mother_40hrs_b_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555085 Sample Accession: GSM3333702 ID: 303333702 13984. SIR2_Log_0hrs_d_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555084 Sample Accession: GSM3333701 ID: 303333701 13985. WT_Log_0hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555083 Sample Accession: GSM3333700 ID: 303333700 13986. FOB1_Log_0hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555082 Sample Accession: GSM3333699 ID: 303333699 13987. UBR2_Log_0hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555081 Sample Accession: GSM3333698 ID: 303333698 13988. SIR2_Log_0hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555080 Sample Accession: GSM3333697 ID: 303333697 13989. WT_mother_20hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555079 Sample Accession: GSM3333696 ID: 303333696 13990. FOB1_mother_20hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555078 Sample Accession: GSM3333695 ID: 303333695 13991. UBR2_mother_20hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555077 Sample Accession: GSM3333694 ID: 303333694 13992. SIR2_mother_20hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555076 Sample Accession: GSM3333693 ID: 303333693 13993. WT_mother_20hrs_a_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555075 Sample Accession: GSM3333692 ID: 303333692 13994. WT_mother_40hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555074 Sample Accession: GSM3333691 ID: 303333691 13995. FOB1_mother_40hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555073 Sample Accession: GSM3333690 ID: 303333690 13996. UBR2_mother_40hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555072 Sample Accession: GSM3333689 ID: 303333689 13997. SIR2_mother_40hrs_c_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555071 Sample Accession: GSM3333688 ID: 303333688 13998. FOB1_mother_20hrs_a_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555070 Sample Accession: GSM3333687 ID: 303333687 13999. UBR2_mother_20hrs_a_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555069 Sample Accession: GSM3333686 ID: 303333686 14000. SIR2_mother_20hrs_a_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555068 Sample Accession: GSM3333685 ID: 303333685 14001. WT_mother_40hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555067 Sample Accession: GSM3333684 ID: 303333684 14002. WT_mother_20hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555066 Sample Accession: GSM3333683 ID: 303333683 14003. UBR2_mother_20hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555065 Sample Accession: GSM3333682 ID: 303333682 14004. SIR2_mother_20hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555064 Sample Accession: GSM3333681 ID: 303333681 14005. FOB1_daughter_40hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555063 Sample Accession: GSM3333680 ID: 303333680 14006. WT_mother_40hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555062 Sample Accession: GSM3333679 ID: 303333679 14007. WT_daughter_40hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555060 Sample Accession: GSM3333678 ID: 303333678 14008. FOB1_mother_40hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555059 Sample Accession: GSM3333677 ID: 303333677 14009. FOB1_mother_20hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555058 Sample Accession: GSM3333676 ID: 303333676 14010. UBR2_daughter_20hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555057 Sample Accession: GSM3333675 ID: 303333675 14011. UBR2_Log_0hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555056 Sample Accession: GSM3333674 ID: 303333674 14012. UBR2_mother_20hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555055 Sample Accession: GSM3333673 ID: 303333673 14013. UBR2_Log_0hrs_d_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555054 Sample Accession: GSM3333672 ID: 303333672 14014. SIR2_daughter_40hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555053 Sample Accession: GSM3333671 ID: 303333671 14015. WT_daughter_40hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555052 Sample Accession: GSM3333670 ID: 303333670 14016. SIR2_mother_40hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555051 Sample Accession: GSM3333669 ID: 303333669 14017. FOB1_mother_20hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555050 Sample Accession: GSM3333668 ID: 303333668 14018. FOB1_Log_0hrs_d_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555049 Sample Accession: GSM3333667 ID: 303333667 14019. FOB1_daughter_20hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555048 Sample Accession: GSM3333666 ID: 303333666 14020. UBR2_mother_40hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555047 Sample Accession: GSM3333665 ID: 303333665 14021. FOB1_Log_0hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555046 Sample Accession: GSM3333664 ID: 303333664 14022. SIR2_daughter_20hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555045 Sample Accession: GSM3333663 ID: 303333663 14023. WT_daughter_20hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555044 Sample Accession: GSM3333662 ID: 303333662 14024. SIR2_daughter_40hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555043 Sample Accession: GSM3333661 ID: 303333661 14025. UBR2_daughter_40hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555042 Sample Accession: GSM3333660 ID: 303333660 14026. SIR2_Log_0hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555041 Sample Accession: GSM3333659 ID: 303333659 14027. SIR2_mother_20hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555040 Sample Accession: GSM3333658 ID: 303333658 14028. SIR2_mother_40hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555039 Sample Accession: GSM3333657 ID: 303333657 14029. WT_Log_0hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555038 Sample Accession: GSM3333656 ID: 303333656 14030. FOB1_mother_40hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555037 Sample Accession: GSM3333655 ID: 303333655 14031. FOB1_daughter_40hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555036 Sample Accession: GSM3333654 ID: 303333654 14032. SIR2_daughter_20hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555035 Sample Accession: GSM3333653 ID: 303333653 14033. WT_daughter_20hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555034 Sample Accession: GSM3333652 ID: 303333652 14034. FOB1_mother_40hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555033 Sample Accession: GSM3333651 ID: 303333651 14035. UBR2_Log_0hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555031 Sample Accession: GSM3333650 ID: 303333650 14036. UBR2_daughter_20hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555030 Sample Accession: GSM3333649 ID: 303333649 14037. UBR2_mother_20hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555029 Sample Accession: GSM3333648 ID: 303333648 14038. FOB1_daughter_20hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555028 Sample Accession: GSM3333647 ID: 303333647 14039. WT_mother_20hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555027 Sample Accession: GSM3333646 ID: 303333646 14040. WT_Log_0hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555026 Sample Accession: GSM3333645 ID: 303333645 14041. SIR2_mother_20hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555025 Sample Accession: GSM3333644 ID: 303333644 14042. UBR2_daughter_40hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555024 Sample Accession: GSM3333643 ID: 303333643 14043. WT_mother_20hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555023 Sample Accession: GSM3333642 ID: 303333642 14044. FOB1_mother_20hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555022 Sample Accession: GSM3333641 ID: 303333641 14045. UBR2_daughter_20hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555021 Sample Accession: GSM3333640 ID: 303333640 14046. UBR2_mother_40hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555020 Sample Accession: GSM3333639 ID: 303333639 14047. FOB1_Log_0hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555019 Sample Accession: GSM3333638 ID: 303333638 14048. WT_Log_0hrs_d_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555018 Sample Accession: GSM3333637 ID: 303333637 14049. FOB1_daughter_20hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555017 Sample Accession: GSM3333636 ID: 303333636 14050. UBR2_mother_40hrs_a_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555016 Sample Accession: GSM3333635 ID: 303333635 14051. SIR2_Log_0hrs_d_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555015 Sample Accession: GSM3333634 ID: 303333634 14052. SIR2_Log_0hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555014 Sample Accession: GSM3333633 ID: 303333633 14053. SIR2_mother_40hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555013 Sample Accession: GSM3333632 ID: 303333632 14054. WT_mother_40hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555012 Sample Accession: GSM3333631 ID: 303333631 14055. WT_daughter_40hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555011 Sample Accession: GSM3333630 ID: 303333630 14056. UBR2_daughter_40hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555010 Sample Accession: GSM3333629 ID: 303333629 14057. SIR2_daughter_20hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555009 Sample Accession: GSM3333628 ID: 303333628 14058. WT_daughter_20hrs_b_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555008 Sample Accession: GSM3333627 ID: 303333627 14059. FOB1_daughter_40hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555007 Sample Accession: GSM3333626 ID: 303333626 14060. SIR2_daughter_40hrs_c_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555006 Sample Accession: GSM3333625 ID: 303333625 14061. mini_stat_55hrs_long_timecourse_ATACseq_plus_PMA_plus_PMA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555005 Sample Accession: GSM3333624 ID: 303333624 14062. mini_stat_44hrs_long_timecourse_ATACseq_plus_PMA_plus_PMA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555004 Sample Accession: GSM3333623 ID: 303333623 14063. mini_stat_30hrs_long_timecourse_ATACseq_plus_PMA_plus_PMA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555003 Sample Accession: GSM3333622 ID: 303333622 14064. mini_stat_20hrs_long_timecourse_ATACseq_plus_PMA_plus_PMA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555002 Sample Accession: GSM3333621 ID: 303333621 14065. mini_stat_14hrs_long_timecourse_ATACseq_plus_PMA_plus_PMA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555001 Sample Accession: GSM3333620 ID: 303333620 14066. mini_stat_10hrs_long_timecourse_ATACseq_plus_PMA_plus_PMA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4555000 Sample Accession: GSM3333619 ID: 303333619 14067. Log_Phase_long_timecourse_ATACseq_plus_PMA_plus_PMA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554999 Sample Accession: GSM3333618 ID: 303333618 14068. mini_stat_55hrs_long_timecourse_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554998 Sample Accession: GSM3333617 ID: 303333617 14069. mini_stat_44hrs_long_timecourse_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554997 Sample Accession: GSM3333616 ID: 303333616 14070. mini_stat_30hrs_long_timecourse_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554996 Sample Accession: GSM3333615 ID: 303333615 14071. mini_stat_20hrs_long_timecourse_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554995 Sample Accession: GSM3333614 ID: 303333614 14072. mini_stat_14hrs_long_timecourse_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554994 Sample Accession: GSM3333613 ID: 303333613 14073. mini_stat_10hrs_long_timecourse_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554993 Sample Accession: GSM3333612 ID: 303333612 14074. Log_Phase_long_timecourse_ATACseq Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3333nnn/GSM3333611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554992 Sample Accession: GSM3333611 ID: 303333611 14075. mini_stat_55hrs_long_timecourse_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554991 Sample Accession: GSM3333610 ID: 303333610 14076. mini_stat_44hrs_long_timecourse_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554990 Sample Accession: GSM3333609 ID: 303333609 14077. mini_stat_30hrs_long_timecourse_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554989 Sample Accession: GSM3333608 ID: 303333608 14078. mini_stat_20hrs_long_timecourse_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554987 Sample Accession: GSM3333607 ID: 303333607 14079. mini_stat_14hrs_long_timecourse_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554986 Sample Accession: GSM3333606 ID: 303333606 14080. mini_stat_10hrs_long_timecourse_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554985 Sample Accession: GSM3333605 ID: 303333605 14081. Log_Phase_long_timecourse_RNA Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae Platform: GPL21656 Series: GSE118581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4554984 Sample Accession: GSM3333604 ID: 303333604 14082. ATACseq amphioxus 8h replicate 2 Organism: Branchiostoma lanceolatum Source name: whole embryo Platform: GPL24210 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352457 Sample Accession: GSM2837486 ID: 302837486 14083. ATACseq amphioxus 8h replicate 1 Organism: Branchiostoma lanceolatum Source name: whole embryo Platform: GPL24210 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352456 Sample Accession: GSM2837485 ID: 302837485 14084. ATACseq amphioxus 60h replicate 2 Organism: Branchiostoma lanceolatum Source name: whole embryo Platform: GPL24210 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352455 Sample Accession: GSM2837484 ID: 302837484 14085. ATACseq amphioxus 60h replicate 1 Organism: Branchiostoma lanceolatum Source name: whole embryo Platform: GPL24210 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352454 Sample Accession: GSM2837483 ID: 302837483 14086. ATACseq amphioxus 36h replicate 1 Organism: Branchiostoma lanceolatum Source name: whole embryo Platform: GPL24210 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352453 Sample Accession: GSM2837482 ID: 302837482 14087. ATACseq amphioxus 15h replicate 2 Organism: Branchiostoma lanceolatum Source name: whole embryo Platform: GPL24210 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352452 Sample Accession: GSM2837481 ID: 302837481 14088. ATACseq amphioxus 15h replicate 1 Organism: Branchiostoma lanceolatum Source name: whole embryo Platform: GPL24210 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352451 Sample Accession: GSM2837480 ID: 302837480 14089. ATACseq zebra shield replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352469 Sample Accession: GSM2837498 ID: 302837498 14090. ATACseq zebra shield replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352468 Sample Accession: GSM2837497 ID: 302837497 14091. ATACseq zebra dome replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352467 Sample Accession: GSM2837496 ID: 302837496 14092. ATACseq zebra dome replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352466 Sample Accession: GSM2837495 ID: 302837495 14093. ATACseq zebra 8 somites replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352465 Sample Accession: GSM2837494 ID: 302837494 14094. ATACseq zebra 8 somites replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352464 Sample Accession: GSM2837493 ID: 302837493 14095. ATACseq zebra 80% epiboly replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352463 Sample Accession: GSM2837492 ID: 302837492 14096. ATACseq zebra 80% epiboly replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352462 Sample Accession: GSM2837491 ID: 302837491 14097. ATACseq zebra 48 hpf replicate 2 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352461 Sample Accession: GSM2837490 ID: 302837490 14098. ATACseq zebra 48 hpf replicate 1 Organism: Danio rerio Source name: whole embryo Platform: GPL21741 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352460 Sample Accession: GSM2837489 ID: 302837489 14099. ATACseq medaka st32 replicate 2 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352479 Sample Accession: GSM2837508 ID: 302837508 14100. ATACseq medaka st32 replicate 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352478 Sample Accession: GSM2837507 ID: 302837507 14101. ATACseq medaka st25 replicate 2 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352477 Sample Accession: GSM2837506 ID: 302837506 14102. ATACseq medaka st25 replicate 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352476 Sample Accession: GSM2837505 ID: 302837505 14103. ATACseq medaka st19 replicate 2 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352475 Sample Accession: GSM2837504 ID: 302837504 14104. ATACseq medaka st19 replicate 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352474 Sample Accession: GSM2837503 ID: 302837503 14105. ATACseq medaka st13 replicate 2 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352473 Sample Accession: GSM2837502 ID: 302837502 14106. ATACseq medaka st13 replicate 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352472 Sample Accession: GSM2837501 ID: 302837501 14107. ATACseq medaka st11 replicate 2 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352471 Sample Accession: GSM2837500 ID: 302837500 14108. ATACseq medaka st11 replicate 1 Organism: Oryzias latipes Source name: whole embryo Platform: GPL24211 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352470 Sample Accession: GSM2837499 ID: 302837499 14109. ATACseq amphioxus hepatic replicate 2 Organism: Branchiostoma lanceolatum Source name: hepatic diverticulum Platform: GPL24206 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352459 Sample Accession: GSM2837488 ID: 302837488 14110. ATACseq amphioxus hepatic replicate 1 Organism: Branchiostoma lanceolatum Source name: hepatic diverticulum Platform: GPL24206 Series: GSE106428 GSE106431 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3352458 Sample Accession: GSM2837487 ID: 302837487 14111. Tn5_control_wildtype_EpiLC_rep1 (ATAC-seq) Organism: Mus musculus Source name: day 2 epiblast-like cells Platform: GPL21103 Series: GSE110162 GSE110164 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3651291 Sample Accession: GSM2981009 ID: 302981009 14112. Smad23DKO_EpiLC_clone_KT15.1F6_differentiation3 (ATAC-seq) Organism: Mus musculus Source name: day 2 epiblast-like cells Platform: GPL21103 Series: GSE110162 GSE110164 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3651290 Sample Accession: GSM2981008 ID: 302981008 14113. Smad23DKO_EpiLC_clone_KT15.1F6_differentiation2 (ATAC-seq) Organism: Mus musculus Source name: day 2 epiblast-like cells Platform: GPL21103 Series: GSE110162 GSE110164 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3651289 Sample Accession: GSM2981007 ID: 302981007 14114. Smad23DKO_EpiLC_clone_KT15.1F6_differentiation1 (ATAC-seq) Organism: Mus musculus Source name: day 2 epiblast-like cells Platform: GPL21103 Series: GSE110162 GSE110164 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3651288 Sample Accession: GSM2981006 ID: 302981006 14115. wildtype_EpiLC_clone_CCE_differentiation3 (ATAC-seq) Organism: Mus musculus Source name: day 2 epiblast-like cells Platform: GPL21103 Series: GSE110162 GSE110164 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3651287 Sample Accession: GSM2981005 ID: 302981005 14116. wildtype_EpiLC_clone_CCE_differentiation2 (ATAC-seq) Organism: Mus musculus Source name: day 2 epiblast-like cells Platform: GPL21103 Series: GSE110162 GSE110164 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3651286 Sample Accession: GSM2981004 ID: 302981004 14117. wildtype_EpiLC_clone_CCE_differentiation1 (ATAC-seq) Organism: Mus musculus Source name: day 2 epiblast-like cells Platform: GPL21103 Series: GSE110162 GSE110164 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3651285 Sample Accession: GSM2981003 ID: 302981003 14118. ATACseq_subject2_GF_rep2 Organism: Homo sapiens Source name: subject2_GF Platform: GPL16791 Series: GSE118499 GSE118500 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3331nnn/GSM3331039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4550089 Sample Accession: GSM3331039 ID: 303331039 14119. ATACseq_subject2_GF_rep1 Organism: Homo sapiens Source name: subject2_GF Platform: GPL16791 Series: GSE118499 GSE118500 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3331nnn/GSM3331038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4550088 Sample Accession: GSM3331038 ID: 303331038 14120. ATACseq_subject2_abd_rep2 Organism: Homo sapiens Source name: subject2_abd Platform: GPL16791 Series: GSE118499 GSE118500 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3331nnn/GSM3331037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4550087 Sample Accession: GSM3331037 ID: 303331037 14121. ATACseq_subject2_abd_rep1 Organism: Homo sapiens Source name: subject2_abd Platform: GPL16791 Series: GSE118499 GSE118500 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3331nnn/GSM3331036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4550086 Sample Accession: GSM3331036 ID: 303331036 14122. ATACseq_subject1_GF_rep2 Organism: Homo sapiens Source name: subject1_GF Platform: GPL16791 Series: GSE118499 GSE118500 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3331nnn/GSM3331035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4550085 Sample Accession: GSM3331035 ID: 303331035 14123. ATACseq_subject1_GF_rep1 Organism: Homo sapiens Source name: subject1_GF Platform: GPL16791 Series: GSE118499 GSE118500 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3331nnn/GSM3331034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4550084 Sample Accession: GSM3331034 ID: 303331034 14124. ATACseq_subject1_abd_rep2 Organism: Homo sapiens Source name: subject1_abd Platform: GPL16791 Series: GSE118499 GSE118500 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3331nnn/GSM3331033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4550083 Sample Accession: GSM3331033 ID: 303331033 14125. ATACseq_subject1_abd_rep1 Organism: Homo sapiens Source name: subject1_abd Platform: GPL16791 Series: GSE118499 GSE118500 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3331nnn/GSM3331032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4550082 Sample Accession: GSM3331032 ID: 303331032 14126. hs_atac_b_control_C4 Organism: Homo sapiens Source name: Human B cells - control Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127814 Sample Accession: GSM2753100 ID: 302753100 14127. hs_atac_b_control_C3 Organism: Homo sapiens Source name: Human B cells - control Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127813 Sample Accession: GSM2753099 ID: 302753099 14128. hs_atac_b_CVID4 Organism: Homo sapiens Source name: Human B cells - common variable immune deficiency Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127812 Sample Accession: GSM2753098 ID: 302753098 14129. hs_atac_b_CVID3 Organism: Homo sapiens Source name: Human B cells - common variable immune deficiency Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127811 Sample Accession: GSM2753097 ID: 302753097 14130. hs_atac_b_CVID2 Organism: Homo sapiens Source name: Human B cells - common variable immune deficiency Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127810 Sample Accession: GSM2753096 ID: 302753096 14131. hs_atac_b_CVID1 Organism: Homo sapiens Source name: Human B cells - common variable immune deficiency Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127809 Sample Accession: GSM2753095 ID: 302753095 14132. hs_atac_b_control-C5 Organism: Homo sapiens Source name: Human B cells – control Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127808 Sample Accession: GSM2753094 ID: 302753094 14133. hs_atac_b_control-C2 Organism: Homo sapiens Source name: Human B cells – control Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127807 Sample Accession: GSM2753093 ID: 302753093 14134. hs_atac_b_PM Organism: Homo sapiens Source name: Human B cells – patient's mother (control) Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127806 Sample Accession: GSM2753092 ID: 302753092 14135. hs_atac_b_brwd1mut-P2 Organism: Homo sapiens Source name: Human B cells – Brwd1 mutation Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127805 Sample Accession: GSM2753091 ID: 302753091 14136. hs_atac_b_brwd1mut-P1 Organism: Homo sapiens Source name: Human B cells – Brwd1 mutation Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127804 Sample Accession: GSM2753090 ID: 302753090 14137. hs_atac_b_control-C1 Organism: Homo sapiens Source name: Human B cells – control Platform: GPL16791 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127803 Sample Accession: GSM2753089 ID: 302753089 14138. mm_atac_immatureb.2 Organism: Mus musculus Source name: ImmatureB Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127838 Sample Accession: GSM2753124 ID: 302753124 14139. mm_atac_immatureb.1 Organism: Mus musculus Source name: ImmatureB Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127837 Sample Accession: GSM2753123 ID: 302753123 14140. mm_atac_spreb_brwd1ko.2 Organism: Mus musculus Source name: small Pre-B - BRWD1-Mut Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127836 Sample Accession: GSM2753122 ID: 302753122 14141. mm_atac_spreb_brwd1ko.1 Organism: Mus musculus Source name: small Pre-B - BRWD1-Mut Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127835 Sample Accession: GSM2753121 ID: 302753121 14142. mm_atac_spreb.2 Organism: Mus musculus Source name: small Pre-B Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127834 Sample Accession: GSM2753120 ID: 302753120 14143. mm_atac_spreb.1 Organism: Mus musculus Source name: small Pre-B Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127833 Sample Accession: GSM2753119 ID: 302753119 14144. mm_atac_lpreb.2 Organism: Mus musculus Source name: Large Pre-B Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127832 Sample Accession: GSM2753118 ID: 302753118 14145. mm_atac_lpreb.1 Organism: Mus musculus Source name: Large Pre-B Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127831 Sample Accession: GSM2753117 ID: 302753117 14146. mm_atac_prob.2 Organism: Mus musculus Source name: Pro-B Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127830 Sample Accession: GSM2753116 ID: 302753116 14147. mm_atac_prob.1 Organism: Mus musculus Source name: Pro-B Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127829 Sample Accession: GSM2753115 ID: 302753115 14148. mm_atac_pre-prob.2 Organism: Mus musculus Source name: Pre-Pro-B Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127828 Sample Accession: GSM2753114 ID: 302753114 14149. mm_atac_pre-prob.1 Organism: Mus musculus Source name: Pre-Pro-B Platform: GPL17021 Series: GSE103057 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2753nnn/GSM2753113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3127827 Sample Accession: GSM2753113 ID: 302753113 14150. 2989 [ATAC-seq] Organism: Homo sapiens Source name: coronary artery smooth muscle cell Platform: GPL18573 Series: GSE113348 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3111nnn/GSM3111024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3994934 Sample Accession: GSM3111024 ID: 303111024 14151. 2510 [ATAC-seq] Organism: Homo sapiens Source name: coronary artery smooth muscle cell Platform: GPL18573 Series: GSE113348 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3111nnn/GSM3111023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3994933 Sample Accession: GSM3111023 ID: 303111023 14152. 2356 [ATAC-seq] Organism: Homo sapiens Source name: coronary artery smooth muscle cell Platform: GPL18573 Series: GSE113348 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3111nnn/GSM3111022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3994932 Sample Accession: GSM3111022 ID: 303111022 14153. 2305 [ATAC-seq] Organism: Homo sapiens Source name: coronary artery smooth muscle cell Platform: GPL18573 Series: GSE113348 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3111nnn/GSM3111021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3994931 Sample Accession: GSM3111021 ID: 303111021 14154. 200212 [ATAC-seq] Organism: Homo sapiens Source name: coronary artery smooth muscle cell Platform: GPL18573 Series: GSE113348 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3111nnn/GSM3111020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3994930 Sample Accession: GSM3111020 ID: 303111020 14155. 1522 [ATAC-seq] Organism: Homo sapiens Source name: coronary artery smooth muscle cell Platform: GPL18573 Series: GSE113348 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3111nnn/GSM3111019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3994929 Sample Accession: GSM3111019 ID: 303111019 14156. 1508 [ATAC-seq] Organism: Homo sapiens Source name: coronary artery smooth muscle cell Platform: GPL18573 Series: GSE113348 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3111nnn/GSM3111018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3994928 Sample Accession: GSM3111018 ID: 303111018 14157. 1346 [ATAC-seq] Organism: Homo sapiens Source name: coronary artery smooth muscle cell Platform: GPL18573 Series: GSE113348 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3111nnn/GSM3111017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3994927 Sample Accession: GSM3111017 ID: 303111017 14158. HS BRG1-KO_ATAC-Seq Organism: Homo sapiens Source name: H9 hESCs Platform: GPL11154 Series: GSE105028 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2829nnn/GSM2829013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316074 Sample Accession: GSM2829013 ID: 302829013 14159. BRG1-KO_ATAC-Seq Organism: Homo sapiens Source name: H9 hESCs Platform: GPL11154 Series: GSE105028 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2829nnn/GSM2829012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316073 Sample Accession: GSM2829012 ID: 302829012 14160. HS OMNI ATAC-Seq Organism: Homo sapiens Source name: H9 hESCs Platform: GPL11154 Series: GSE105028 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2829nnn/GSM2829011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316072 Sample Accession: GSM2829011 ID: 302829011 14161. OMNI ATAC-Seq Organism: Homo sapiens Source name: H9 hESCs Platform: GPL11154 Series: GSE105028 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2829nnn/GSM2829010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316071 Sample Accession: GSM2829010 ID: 302829010 14162. HS Fast ATAC-Seq Rep2 Organism: Homo sapiens Source name: H9 hESCs Platform: GPL11154 Series: GSE105028 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316070 Sample Accession: GSM2829009 ID: 302829009 14163. HS Fast ATAC-Seq Rep1 Organism: Homo sapiens Source name: H9 hESCs Platform: GPL11154 Series: GSE105028 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316069 Sample Accession: GSM2829008 ID: 302829008 14164. Fast ATAC-Seq Rep2 Organism: Homo sapiens Source name: H9 hESCs Platform: GPL11154 Series: GSE105028 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316068 Sample Accession: GSM2829007 ID: 302829007 14165. Fast ATAC-Seq Rep1 Organism: Homo sapiens Source name: H9 hESCs Platform: GPL11154 Series: GSE105028 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316067 Sample Accession: GSM2829006 ID: 302829006 14166. Rad21-/-_LPS_6h_ATAC_rep2 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581792 Sample Accession: GSM2905593 ID: 302905593 14167. Rad21-/-_LPS_6h_ATAC_rep1 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581791 Sample Accession: GSM2905592 ID: 302905592 14168. Rad21-/-_LPS_1h_ATAC_rep2 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581790 Sample Accession: GSM2905591 ID: 302905591 14169. Rad21-/-_LPS_1h_ATAC_rep1 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581789 Sample Accession: GSM2905590 ID: 302905590 14170. Rad21-/-_unstimulated_ATAC_rep2 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581788 Sample Accession: GSM2905589 ID: 302905589 14171. Rad21-/-_unstimulated_ATAC_rep1 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581787 Sample Accession: GSM2905588 ID: 302905588 14172. WT_LPS_6h_ATAC_rep2 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581786 Sample Accession: GSM2905587 ID: 302905587 14173. WT_LPS_6h_ATAC_rep1 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581785 Sample Accession: GSM2905586 ID: 302905586 14174. WT_LPS_1h_ATAC_rep2 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581784 Sample Accession: GSM2905585 ID: 302905585 14175. WT_LPS_1h_ATAC_rep1 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581783 Sample Accession: GSM2905584 ID: 302905584 14176. WT_unstimulated_ATAC_rep2 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581782 Sample Accession: GSM2905583 ID: 302905583 14177. WT_unstimulated_ATAC_rep1 Organism: Mus musculus Source name: Bone marrow-derived macrophages Platform: GPL17021 Series: GSE108585 GSE108599 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2905nnn/GSM2905582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3581781 Sample Accession: GSM2905582 ID: 302905582 14178. MEF_RING1Bfl_TAM_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, tamoxifen-treated, ATAC-seq Platform: GPL19057 Series: GSE98403 GSE117768 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4474787 Sample Accession: GSM3308424 ID: 303308424 14179. MEF_RING1Bfl_TAM_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, tamoxifen-treated, ATAC-seq Platform: GPL19057 Series: GSE98403 GSE117768 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4474786 Sample Accession: GSM3308423 ID: 303308423 14180. MEF_RING1Bfl_TAM_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, tamoxifen-treated, ATAC-seq Platform: GPL19057 Series: GSE98403 GSE117768 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4474785 Sample Accession: GSM3308422 ID: 303308422 14181. MEF_RING1Bfl_UNT_ATAC_rep3 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, untreated control, ATAC-seq Platform: GPL19057 Series: GSE98403 GSE117768 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4474784 Sample Accession: GSM3308421 ID: 303308421 14182. MEF_RING1Bfl_UNT_ATAC_rep2 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, untreated control, ATAC-seq Platform: GPL19057 Series: GSE98403 GSE117768 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4474783 Sample Accession: GSM3308420 ID: 303308420 14183. MEF_RING1Bfl_UNT_ATAC_rep1 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, untreated control, ATAC-seq Platform: GPL19057 Series: GSE98403 GSE117768 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4474782 Sample Accession: GSM3308419 ID: 303308419 14184. 3/4 iPSC, replicate2, ATAC-seq Organism: Mus musculus Source name: mouse iPSCs Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386295 Sample Accession: GSM2855059 ID: 302855059 14185. 3/4 iPSC, replicate1, ATAC-seq Organism: Mus musculus Source name: mouse iPSCs Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386294 Sample Accession: GSM2855058 ID: 302855058 14186. d6 SSEA1+EpCAM+Sca1-, replicate2, ATAC-seq Organism: Mus musculus Source name: sorted reprogramming intermediates Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386293 Sample Accession: GSM2855057 ID: 302855057 14187. d6 SSEA1+EpCAM+Sca1-, replicate1, ATAC-seq Organism: Mus musculus Source name: sorted reprogramming intermediates Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386292 Sample Accession: GSM2855056 ID: 302855056 14188. d6 SSEA1+EpCAM-Sca1+, replicate2, ATAC-seq Organism: Mus musculus Source name: sorted reprogramming intermediates Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386291 Sample Accession: GSM2855055 ID: 302855055 14189. d6 SSEA1+EpCAM-Sca1+, replicate1, ATAC-seq Organism: Mus musculus Source name: sorted reprogramming intermediates Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386290 Sample Accession: GSM2855054 ID: 302855054 14190. d3 SSEA1+CD73+Sca1-, replicate2, ATAC-seq Organism: Mus musculus Source name: sorted reprogramming intermediates Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386289 Sample Accession: GSM2855053 ID: 302855053 14191. d3 SSEA1+CD73+Sca1-, replicate1, ATAC-seq Organism: Mus musculus Source name: sorted reprogramming intermediates Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386288 Sample Accession: GSM2855052 ID: 302855052 14192. d3 SSEA1+CD73-Sca1+, replicate2, ATAC-seq Organism: Mus musculus Source name: sorted reprogramming intermediates Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386287 Sample Accession: GSM2855051 ID: 302855051 14193. d3 SSEA1+CD73-Sca1+, replicate1, ATAC-seq Organism: Mus musculus Source name: sorted reprogramming intermediates Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386286 Sample Accession: GSM2855050 ID: 302855050 14194. 3/4 MEF, replicate2, ATAC-seq Organism: Mus musculus Source name: mouse embryonic fibroblasts Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855049/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386285 Sample Accession: GSM2855049 ID: 302855049 14195. 3/4 MEF, replicate1, ATAC-seq Organism: Mus musculus Source name: mouse embryonic fibroblasts Platform: GPL17021 Series: GSE106834 GSE106838 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2855nnn/GSM2855048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3386284 Sample Accession: GSM2855048 ID: 302855048 14196. ATAC-seq_Dusp9+/- 2 Organism: Mus musculus musculus x M. m. castaneus Source name: Embryonic Stem Cells Platform: GPL24587 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401202 Sample Accession: GSM3290175 ID: 303290175 14197. ATAC-seq_Dusp9+/- 1 Organism: Mus musculus musculus x M. m. castaneus Source name: Embryonic Stem Cells Platform: GPL24587 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401201 Sample Accession: GSM3290174 ID: 303290174 14198. ATAC-seq_F121 Organism: Mus musculus musculus x M. m. castaneus Source name: Embryonic Stem Cells Platform: GPL24587 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401200 Sample Accession: GSM3290173 ID: 303290173 14199. ATAC-seq_CM7 (P6) Organism: Mus musculus musculus x M. m. castaneus Source name: Embryonic Stem Cells Platform: GPL24587 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401198 Sample Accession: GSM3290171 ID: 303290171 14200. ATAC-seq_CM3 (P6) Organism: Mus musculus musculus x M. m. castaneus Source name: Embryonic Stem Cells Platform: GPL24587 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401197 Sample Accession: GSM3290170 ID: 303290170 14201. ATAC-seq_CM2 (P6) Organism: Mus musculus musculus x M. m. castaneus Source name: Embryonic Stem Cells Platform: GPL24587 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401196 Sample Accession: GSM3290169 ID: 303290169 14202. ATAC-seq_CM1 (P6) Organism: Mus musculus musculus x M. m. castaneus Source name: Embryonic Stem Cells Platform: GPL24587 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401195 Sample Accession: GSM3290168 ID: 303290168 14203. ATAC-seq_V6.5 Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401199 Sample Accession: GSM3290172 ID: 303290172 14204. ATAC-seq_LV22 (P13) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401194 Sample Accession: GSM3290167 ID: 303290167 14205. ATAC-seq_LV21 (P13) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401193 Sample Accession: GSM3290166 ID: 303290166 14206. ATAC-seq_LV20 (P13) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401192 Sample Accession: GSM3290165 ID: 303290165 14207. ATAC-seq_LV16 (P13) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401191 Sample Accession: GSM3290164 ID: 303290164 14208. ATAC-seq_LV8 (P13) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401190 Sample Accession: GSM3290163 ID: 303290163 14209. ATAC-seq_LV4 (P13) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401189 Sample Accession: GSM3290162 ID: 303290162 14210. ATAC-seq_LV22 (P5) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401188 Sample Accession: GSM3290161 ID: 303290161 14211. ATAC-seq_LV21 (P5) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401187 Sample Accession: GSM3290160 ID: 303290160 14212. ATAC-seq_LV20 (P5) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401186 Sample Accession: GSM3290159 ID: 303290159 14213. ATAC-seq_LV16 (P5) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401185 Sample Accession: GSM3290158 ID: 303290158 14214. ATAC-seq_LV8 (P5) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401184 Sample Accession: GSM3290157 ID: 303290157 14215. ATAC-seq_LV4 (P5) Organism: Mus musculus Source name: induced Pluripotent Stem Cells Platform: GPL21103 Series: GSE110215 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3290nnn/GSM3290156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4401183 Sample Accession: GSM3290156 ID: 303290156 14216. 3_V5T4_B Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394808 Sample Accession: GSM3273003 ID: 303273003 14217. 3_V5T4_A Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394807 Sample Accession: GSM3273002 ID: 303273002 14218. 3_V5T3 Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394806 Sample Accession: GSM3273001 ID: 303273001 14219. 3_V5T2_B Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394805 Sample Accession: GSM3273000 ID: 303273000 14220. 3_V5T2_A Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394804 Sample Accession: GSM3272999 ID: 303272999 14221. 3_V5T1_B Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394803 Sample Accession: GSM3272998 ID: 303272998 14222. 3_V5T1_A Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394802 Sample Accession: GSM3272997 ID: 303272997 14223. 3_V5L1 Organism: Mus musculus Source name: liver metastasis Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394801 Sample Accession: GSM3272996 ID: 303272996 14224. 3_V5L2 Organism: Mus musculus Source name: liver metastasis Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394800 Sample Accession: GSM3272995 ID: 303272995 14225. 3_V5N1_B Organism: Mus musculus Source name: lymph node metastasis Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394799 Sample Accession: GSM3272994 ID: 303272994 14226. 3_V5L1_A Organism: Mus musculus Source name: liver metastasis Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394798 Sample Accession: GSM3272993 ID: 303272993 14227. 1_V3T1_B Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394797 Sample Accession: GSM3272992 ID: 303272992 14228. 1_V3T1_A Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394796 Sample Accession: GSM3272991 ID: 303272991 14229. 1_V2L1_B Organism: Mus musculus Source name: liver metastasis Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394795 Sample Accession: GSM3272990 ID: 303272990 14230. 1_V2L1_A Organism: Mus musculus Source name: liver metastasis Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394794 Sample Accession: GSM3272989 ID: 303272989 14231. 3_G5T2_B Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394793 Sample Accession: GSM3272988 ID: 303272988 14232. 3_G5T2_A Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394792 Sample Accession: GSM3272987 ID: 303272987 14233. 3_G5T1_B Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394791 Sample Accession: GSM3272986 ID: 303272986 14234. 3_G5T1_A Organism: Mus musculus Source name: lung tumor Platform: GPL19057 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394790 Sample Accession: GSM3272985 ID: 303272985 14235. 1_V4T1_B (re-analysis of GSM2147576) Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394823 Sample Accession: GSM3273018 ID: 303273018 14236. 1_V4T1_A (re-analysis of GSM2147575) Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394822 Sample Accession: GSM3273017 ID: 303273017 14237. 1_V3T1_B (re-analysis of GSM2147574) Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394821 Sample Accession: GSM3273016 ID: 303273016 14238. 1_V3T1_A (re-analysis of GSM2147573) Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394820 Sample Accession: GSM3273015 ID: 303273015 14239. 1_V2T1_B (re-analysis of GSM2147572) Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394819 Sample Accession: GSM3273014 ID: 303273014 14240. 1_V2T1_A (re-analysis of GSM2147571) Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394818 Sample Accession: GSM3273013 ID: 303273013 14241. 1_V1T1_B (re-analysis of GSM2147570) Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394817 Sample Accession: GSM3273012 ID: 303273012 14242. 1_V4L1_B (re-analysis of GSM2147569) Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394816 Sample Accession: GSM3273011 ID: 303273011 14243. 1_V4L1_A (re-analysis of GSM2147568) Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394815 Sample Accession: GSM3273010 ID: 303273010 14244. 1_V3L1_B (re-analysis of GSM2147567) Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394814 Sample Accession: GSM3273009 ID: 303273009 14245. 1_V3L1_A (re-analysis of GSM2147566) Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394813 Sample Accession: GSM3273008 ID: 303273008 14246. 1_V2L1_B (re-analysis of GSM2147565) Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394812 Sample Accession: GSM3273007 ID: 303273007 14247. 1_V2L1_A (re-analysis of GSM2147564) Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394811 Sample Accession: GSM3273006 ID: 303273006 14248. 1_V1L1_B (re-analysis of GSM2147563) Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394810 Sample Accession: GSM3273005 ID: 303273005 14249. 1_V1L1_A (re-analysis of GSM2147562) Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394809 Sample Accession: GSM3273004 ID: 303273004 14250. 2_G6T2 Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394789 Sample Accession: GSM3272984 ID: 303272984 14251. 2_G6T1 Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394788 Sample Accession: GSM3272983 ID: 303272983 14252. 2_G6L34 Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394787 Sample Accession: GSM3272982 ID: 303272982 14253. 2_G6L2 Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394786 Sample Accession: GSM3272981 ID: 303272981 14254. 2_G6L1 Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394785 Sample Accession: GSM3272980 ID: 303272980 14255. 2_G3T2 Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394784 Sample Accession: GSM3272979 ID: 303272979 14256. 2_G3L3 Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394783 Sample Accession: GSM3272978 ID: 303272978 14257. 2_G3L2 Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394782 Sample Accession: GSM3272977 ID: 303272977 14258. 2_G2T2 Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394781 Sample Accession: GSM3272976 ID: 303272976 14259. 2_G2T1 Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394780 Sample Accession: GSM3272975 ID: 303272975 14260. 2_G2L2 Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394779 Sample Accession: GSM3272974 ID: 303272974 14261. 2_G2L1 Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394778 Sample Accession: GSM3272973 ID: 303272973 14262. 2_G1T2 Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394777 Sample Accession: GSM3272972 ID: 303272972 14263. 2_G1T1 Organism: Mus musculus Source name: lung tumor Platform: GPL17021 Series: GSE117177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4394776 Sample Accession: GSM3272971 ID: 303272971 14264. ATAC-seq from Gatad2a system, Day8 Organism: Mus musculus Source name: Gatad2a cell line, Day8 post DOX induction Platform: GPL19057 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182580 Sample Accession: GSM2782417 ID: 302782417 14265. ATAC-seq from Gatad2a system, Day6 Organism: Mus musculus Source name: Gatad2a cell line, Day6 post DOX induction Platform: GPL19057 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182579 Sample Accession: GSM2782416 ID: 302782416 14266. ATAC-seq from Gatad2a system, Day4 Organism: Mus musculus Source name: Gatad2a cell line, Day4 post DOX induction Platform: GPL19057 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182578 Sample Accession: GSM2782415 ID: 302782415 14267. ATAC-seq from Gatad2a system, Day2 Organism: Mus musculus Source name: Gatad2a cell line, Day2 post DOX induction Platform: GPL19057 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182577 Sample Accession: GSM2782414 ID: 302782414 14268. ATAC-seq from Gatad2a system, MEF Organism: Mus musculus Source name: Gatad2a cell line, MEF post DOX induction Platform: GPL19057 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182576 Sample Accession: GSM2782413 ID: 302782413 14269. ATAC-seq from V6.5 WT ES cells Organism: Mus musculus Source name: v6.5 WT Embryonic stem cells Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182575 Sample Accession: GSM2782412 ID: 302782412 14270. ATAC-seq from Mbd3f/- system, IPS Organism: Mus musculus Source name: Mbd3f/- cell line, Established induced pluripotent stem cells Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182574 Sample Accession: GSM2782411 ID: 302782411 14271. ATAC-seq from Mbd3f/- system, Day8 Organism: Mus musculus Source name: Mbd3f/- cell line, Day8 post DOX induction Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182573 Sample Accession: GSM2782410 ID: 302782410 14272. ATAC-seq from Mbd3f/- system, Day7 Organism: Mus musculus Source name: Mbd3f/- cell line, Day7 post DOX induction Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182572 Sample Accession: GSM2782409 ID: 302782409 14273. ATAC-seq from Mbd3f/- system, Day6 Organism: Mus musculus Source name: Mbd3f/- cell line, Day6 post DOX induction Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182571 Sample Accession: GSM2782408 ID: 302782408 14274. ATAC-seq from Mbd3f/- system, Day5 Organism: Mus musculus Source name: Mbd3f/- cell line, Day5 post DOX induction Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182570 Sample Accession: GSM2782407 ID: 302782407 14275. ATAC-seq from Mbd3f/- system, Day4 Organism: Mus musculus Source name: Mbd3f/- cell line, Day4 post DOX induction Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182569 Sample Accession: GSM2782406 ID: 302782406 14276. ATAC-seq from Mbd3f/- system, Day3 Organism: Mus musculus Source name: Mbd3f/- cell line, Day3 post DOX induction Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182568 Sample Accession: GSM2782405 ID: 302782405 14277. ATAC-seq from Mbd3f/- system, Day2 Organism: Mus musculus Source name: Mbd3f/- cell line, Day2 post DOX induction Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182567 Sample Accession: GSM2782404 ID: 302782404 14278. ATAC-seq from Mbd3f/- system, Day1 Organism: Mus musculus Source name: Mbd3f/- cell line, Day1 post DOX induction Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182566 Sample Accession: GSM2782403 ID: 302782403 14279. ATAC-seq from Mbd3f/- system, MEF Organism: Mus musculus Source name: Mbd3f/- cell line, Mouse embryonic fibroblasts Platform: GPL17021 Series: GSE102518 GSE103821 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2782nnn/GSM2782402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3182565 Sample Accession: GSM2782402 ID: 302782402 14280. Wildtype_3 ATAC-Seq Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE101457 GSE101459 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3005880 Sample Accession: GSM2703877 ID: 302703877 14281. Wildtype_2 ATAC-Seq Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE101457 GSE101459 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3005879 Sample Accession: GSM2703876 ID: 302703876 14282. Wildtype_1 ATAC-Seq Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE101457 GSE101459 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3005878 Sample Accession: GSM2703875 ID: 302703875 14283. Rroid KO_3 ATAC-Seq Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE101457 GSE101459 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3005877 Sample Accession: GSM2703874 ID: 302703874 14284. Rroid KO_2 ATAC-Seq Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE101457 GSE101459 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3005876 Sample Accession: GSM2703873 ID: 302703873 14285. Rroid KO_1 ATAC-Seq Organism: Mus musculus Source name: Spleen Platform: GPL19057 Series: GSE101457 GSE101459 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3005875 Sample Accession: GSM2703872 ID: 302703872 14286. MEF_48h_after_NT_Toca1 Organism: Mus musculus musculus x M. m. castaneus Source name: MEFs Platform: GPL22270 Series: GSE98776 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2611nnn/GSM2611676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2796037 Sample Accession: GSM2611676 ID: 302611676 14287. MEF_48h_after_NT-2 Organism: Mus musculus musculus x M. m. castaneus Source name: MEFs Platform: GPL22270 Series: GSE98776 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2611nnn/GSM2611675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2796035 Sample Accession: GSM2611675 ID: 302611675 14288. MEF_48h_after_NT-1 Organism: Mus musculus musculus x M. m. castaneus Source name: MEFs Platform: GPL22270 Series: GSE98776 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2611nnn/GSM2611674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2796033 Sample Accession: GSM2611674 ID: 302611674 14289. MEF_before_NT Organism: Mus musculus musculus x M. m. castaneus Source name: MEFs Platform: GPL22270 Series: GSE98776 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2611nnn/GSM2611673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2796031 Sample Accession: GSM2611673 ID: 302611673 14290. C2C12-1000-2 Organism: Mus musculus Source name: C2C12 cells Platform: GPL17021 Series: GSE98776 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2611nnn/GSM2611651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2795987 Sample Accession: GSM2611651 ID: 302611651 14291. C2C12-1000-1 Organism: Mus musculus Source name: C2C12 cells Platform: GPL17021 Series: GSE98776 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2611nnn/GSM2611650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2795986 Sample Accession: GSM2611650 ID: 302611650 14292. C2C12-50000-2 Organism: Mus musculus Source name: C2C12 cells Platform: GPL17021 Series: GSE98776 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2611nnn/GSM2611649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2795985 Sample Accession: GSM2611649 ID: 302611649 14293. C2C12-50000-1 Organism: Mus musculus Source name: C2C12 cells Platform: GPL17021 Series: GSE98776 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2611nnn/GSM2611648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2795984 Sample Accession: GSM2611648 ID: 302611648 14294. DC1_NI72 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320903 Sample Accession: GSM3231159 ID: 303231159 14295. DC1_NI48 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320902 Sample Accession: GSM3231158 ID: 303231158 14296. DC1_NI24 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320901 Sample Accession: GSM3231157 ID: 303231157 14297. DC1_NI18 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320900 Sample Accession: GSM3231156 ID: 303231156 14298. DC1_NI2 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320899 Sample Accession: GSM3231155 ID: 303231155 14299. DC1_HI72 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320898 Sample Accession: GSM3231154 ID: 303231154 14300. DC1_HI48 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320897 Sample Accession: GSM3231153 ID: 303231153 14301. DC1_HI24 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320896 Sample Accession: GSM3231152 ID: 303231152 14302. DC1_HI18 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320895 Sample Accession: GSM3231151 ID: 303231151 14303. DC1_HI2 [ATAC-seq] Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE116406 GSE116412 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4320894 Sample Accession: GSM3231150 ID: 303231150 14304. Smchd1 fl/fl M 7 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782573 Sample Accession: GSM3038032 ID: 303038032 14305. Smchd1 fl/fl M5 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782572 Sample Accession: GSM3038031 ID: 303038031 14306. Smchd1 del/del M 7 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782571 Sample Accession: GSM3038030 ID: 303038030 14307. Smchd1 del/del M 5 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782570 Sample Accession: GSM3038029 ID: 303038029 14308. Smchd1 fl/fl F 3 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782569 Sample Accession: GSM3038028 ID: 303038028 14309. Smchd1 fl/fl F 2 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782568 Sample Accession: GSM3038027 ID: 303038027 14310. Smchd1 fl/fl F 1 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782567 Sample Accession: GSM3038026 ID: 303038026 14311. Smchd1 del/del F 3 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782566 Sample Accession: GSM3038025 ID: 303038025 14312. Smchd1 del/del F 2 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782565 Sample Accession: GSM3038024 ID: 303038024 14313. Smchd1 del/del F 1 [ATAC-Seq] Organism: Mus musculus Source name: Neural stem cells Platform: GPL19057 Series: GSE111721 GSE111726 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3782564 Sample Accession: GSM3038023 ID: 303038023 14314. PY230 2D culture (ATAC-seq) Organism: Mus musculus Source name: Cultured PY230 cells Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318731 Sample Accession: GSM3230399 ID: 303230399 14315. PY230 bulk tumor (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318730 Sample Accession: GSM3230398 ID: 303230398 14316. tumor PY230 luminal SOX10 low sample1 (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318723 Sample Accession: GSM3230391 ID: 303230391 14317. tumor PY230 luminal SOX10 high sample1 (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318720 Sample Accession: GSM3230388 ID: 303230388 14318. normal adult mature luminal cells sample2 (ATAC-seq) Organism: Mus musculus Source name: WT mammary gland Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230387/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318719 Sample Accession: GSM3230387 ID: 303230387 14319. normal adult mature luminal cells sample1 (ATAC-seq) Organism: Mus musculus Source name: WT mammary gland Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318718 Sample Accession: GSM3230386 ID: 303230386 14320. normal adult luminal progenitor cells sample2 (ATAC-seq) Organism: Mus musculus Source name: WT mammary gland Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318717 Sample Accession: GSM3230385 ID: 303230385 14321. normal adult luminal progenitor cells sample1 (ATAC-seq) Organism: Mus musculus Source name: WT mammary gland Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318716 Sample Accession: GSM3230384 ID: 303230384 14322. normal adult basal cells sample2 (ATAC-seq) Organism: Mus musculus Source name: WT mammary gland Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318715 Sample Accession: GSM3230383 ID: 303230383 14323. normal adult basal cells sample1 (ATAC-seq) Organism: Mus musculus Source name: WT mammary gland Platform: GPL17021 Series: GSE116383 GSE116386 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318714 Sample Accession: GSM3230382 ID: 303230382 14324. tumor C3-1 basal SOX10 high sample2 (ATAC-seq) Organism: Mus musculus Source name: Spontaneous C3-1-TAg tumors Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318729 Sample Accession: GSM3230397 ID: 303230397 14325. tumor C3-1 basal SOX10 high sample1 (ATAC-seq) Organism: Mus musculus Source name: Spontaneous C3-1-TAg tumors Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318728 Sample Accession: GSM3230396 ID: 303230396 14326. tumor PY230 basal SOX10 high sample2 (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318727 Sample Accession: GSM3230395 ID: 303230395 14327. tumor PY230 basal SOX10 high sample1 (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318726 Sample Accession: GSM3230394 ID: 303230394 14328. tumor PY230 luminal SOX10 low sample3 (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318725 Sample Accession: GSM3230393 ID: 303230393 14329. tumor PY230 luminal SOX10 low sample2 (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318724 Sample Accession: GSM3230392 ID: 303230392 14330. tumor PY230 luminal SOX10 high sample3 (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318722 Sample Accession: GSM3230390 ID: 303230390 14331. tumor PY230 luminal SOX10 high sample2 (ATAC-seq) Organism: Mus musculus Source name: Transplanted PY230 tumors Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318721 Sample Accession: GSM3230389 ID: 303230389 14332. normal E18 fMaSC sample2 (ATAC-seq) Organism: Mus musculus Source name: WT mammary gland Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318713 Sample Accession: GSM3230381 ID: 303230381 14333. normal E18 fMaSC sample1 (ATAC-seq) Organism: Mus musculus Source name: WT mammary gland Platform: GPL19057 Series: GSE116383 GSE116386 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3230nnn/GSM3230380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4318712 Sample Accession: GSM3230380 ID: 303230380 14334. ATAC-seq_Luminal Suz12-deleted 3 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321993 Sample Accession: GSM3231535 ID: 303231535 14335. ATAC-seq_Luminal Wt 3 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321992 Sample Accession: GSM3231534 ID: 303231534 14336. ATAC-seq_Luminal Suz12-deleted 2 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321991 Sample Accession: GSM3231533 ID: 303231533 14337. ATAC-seq_Luminal Wt 2 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321990 Sample Accession: GSM3231532 ID: 303231532 14338. ATAC-seq_Luminal Suz12-deleted 1 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321989 Sample Accession: GSM3231531 ID: 303231531 14339. ATAC-seq_Luminal Wt 1 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321988 Sample Accession: GSM3231530 ID: 303231530 14340. ATAC-seq_Basal Suz12-deleted 3 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321987 Sample Accession: GSM3231529 ID: 303231529 14341. ATAC-seq_Basal Wt 3 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321986 Sample Accession: GSM3231528 ID: 303231528 14342. ATAC-seq_Basal Suz12-deleted 2 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321985 Sample Accession: GSM3231527 ID: 303231527 14343. ATAC-seq_Basal Wt 2 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321984 Sample Accession: GSM3231526 ID: 303231526 14344. ATAC-seq_Basal Suz12-deleted 1 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321983 Sample Accession: GSM3231525 ID: 303231525 14345. ATAC-seq_Basal Wt 1 Organism: Mus musculus Source name: Mammary epithelium Platform: GPL19057 Series: GSE116430 GSE116431 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3231nnn/GSM3231524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4321982 Sample Accession: GSM3231524 ID: 303231524 14346. ATAC-seq preB aged 4 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600772 Sample Accession: GSM2948250 ID: 302948250 14347. ATAC-seq preB aged 3 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600771 Sample Accession: GSM2948249 ID: 302948249 14348. ATAC-seq preB aged 2 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600770 Sample Accession: GSM2948248 ID: 302948248 14349. ATAC-seq preB aged 1 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600769 Sample Accession: GSM2948247 ID: 302948247 14350. ATAC-seq proB aged 4 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600768 Sample Accession: GSM2948246 ID: 302948246 14351. ATAC-seq proB aged 3 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600767 Sample Accession: GSM2948245 ID: 302948245 14352. ATAC-seq proB aged 2 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600766 Sample Accession: GSM2948244 ID: 302948244 14353. ATAC-seq proB aged 1 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600765 Sample Accession: GSM2948243 ID: 302948243 14354. ATAC-seq preB young 4 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600764 Sample Accession: GSM2948242 ID: 302948242 14355. ATAC-seq preB young 3 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600763 Sample Accession: GSM2948241 ID: 302948241 14356. ATAC-seq preB young 2 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600762 Sample Accession: GSM2948240 ID: 302948240 14357. ATAC-seq preB young 1 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600761 Sample Accession: GSM2948239 ID: 302948239 14358. ATAC-seq proB young 4 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600760 Sample Accession: GSM2948238 ID: 302948238 14359. ATAC-seq proB young 3 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600759 Sample Accession: GSM2948237 ID: 302948237 14360. ATAC-seq proB young 2 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600758 Sample Accession: GSM2948236 ID: 302948236 14361. ATAC-seq proB young 1 Organism: Mus musculus Source name: bone marrow Platform: GPL15103 Series: GSE109671 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3600757 Sample Accession: GSM2948235 ID: 302948235 14362. mouse_OPC_H3K4me3chIP-seq_Chd8cKO Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE107919 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214324/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292400 Sample Accession: GSM3214324 ID: 303214324 14363. mouse_OPC_H3K4me3chIP-seq_control Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE107919 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214323/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292399 Sample Accession: GSM3214323 ID: 303214323 14364. mouse_OPC_ATAC-seq_Chd8cKO Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE107919 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292398 Sample Accession: GSM3214322 ID: 303214322 14365. mouse_OPC_ATAC-seq_control Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE107919 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292397 Sample Accession: GSM3214321 ID: 303214321 14366. mouse_OPC_RNA-seq_Chd8cKO2 Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE107919 FTP download: GEO (FPKM_TRACKING) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292395 Sample Accession: GSM3214319 ID: 303214319 14367. mouse_OPC_RNA-seq_Chd8cKO1 Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE107919 FTP download: GEO (FPKM_TRACKING) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292394 Sample Accession: GSM3214318 ID: 303214318 14368. mouse_OPC_RNA-seq_control2 Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE107919 FTP download: GEO (FPKM_TRACKING) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292393 Sample Accession: GSM3214317 ID: 303214317 14369. mouse_OPC_RNA-seq_control1 Organism: Mus musculus Source name: mouse OPC Platform: GPL17021 Series: GSE107919 FTP download: GEO (FPKM_TRACKING) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292392 Sample Accession: GSM3214316 ID: 303214316 14370. CHD7_OPC_chIP-seq Organism: Rattus norvegicus Source name: rat OPC Platform: GPL18694 Series: GSE107919 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3214nnn/GSM3214320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4292396 Sample Accession: GSM3214320 ID: 303214320 14371. ENR4 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047649 Sample Accession: GSM3132997 ID: 303132997 14372. ENR3 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047644 Sample Accession: GSM3132992 ID: 303132992 14373. ENR2 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047639 Sample Accession: GSM3132987 ID: 303132987 14374. ENR1 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047633 Sample Accession: GSM3132981 ID: 303132981 14375. EN4 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047628 Sample Accession: GSM3132976 ID: 303132976 14376. EN3 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047623 Sample Accession: GSM3132971 ID: 303132971 14377. EN2 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047617 Sample Accession: GSM3132965 ID: 303132965 14378. EN1 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047612 Sample Accession: GSM3132960 ID: 303132960 14379. CV4 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047606 Sample Accession: GSM3132954 ID: 303132954 14380. CV3 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047601 Sample Accession: GSM3132949 ID: 303132949 14381. CV2 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047596 Sample Accession: GSM3132944 ID: 303132944 14382. CV1 ATAC Organism: Mus musculus Source name: Small intestinal organoids Platform: GPL13112 Series: GSE114113 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4047590 Sample Accession: GSM3132938 ID: 303132938 14383. mm_BMDM_MCSFIL4_ATAC_rep2 Organism: Mus musculus Source name: ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF/IL4 (rep2) Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716811 Sample Accession: GSM3164934 ID: 303164934 14384. mm_BMDM_MCSFIL4_ATAC_rep1 Organism: Mus musculus Source name: ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF/IL4 (rep1) Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716810 Sample Accession: GSM3164933 ID: 303164933 14385. mm_BMDM_MCSF_ATAC_rep2 Organism: Mus musculus Source name: ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (rep2) Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716807 Sample Accession: GSM3164932 ID: 303164932 14386. mm_BMDM_MCSF_ATAC_rep1 Organism: Mus musculus Source name: ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (rep1) Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716806 Sample Accession: GSM3164931 ID: 303164931 14387. mm_BMDM_PpargKO_24hIL4_ATAC Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO mouse BMDM cells differentiated in the presence of MCSF (24hIL4) Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097613 Sample Accession: GSM3164930 ID: 303164930 14388. mm_BMDM_PpargKO_ctrl_ATAC Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO mouse BMDM cells differentiated in the presence of MCSF Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097611 Sample Accession: GSM3164929 ID: 303164929 14389. mm_BMDM_Wt_24hIL4_ATAC Organism: Mus musculus Source name: ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (24hIL4) Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097609 Sample Accession: GSM3164928 ID: 303164928 14390. mm_BMDM_Wt_ctrl_ATAC Organism: Mus musculus Source name: ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097604 Sample Accession: GSM3164927 ID: 303164927 14391. mm_iBMDM_wtPparg_IL4_ATAC_rep2 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with wild type PPARg expressing lentivirus under the control of a doxycycline inducible promoter. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097641 Sample Accession: GSM3164926 ID: 303164926 14392. mm_iBMDM_wtPparg_IL4_ATAC_rep1 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with wild type PPARg expressing lentivirus under the control of a doxycycline inducible promoter. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097653 Sample Accession: GSM3164925 ID: 303164925 14393. mm_iBMDM_wtPparg_ctrl_ATAC_rep2 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with wild type PPARg expressing lentivirus under the control of a doxycycline inducible promoter. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097643 Sample Accession: GSM3164924 ID: 303164924 14394. mm_iBMDM_wtPparg_ctrl_ATAC_rep1 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with wild type PPARg expressing lentivirus under the control of a doxycycline inducible promoter. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097644 Sample Accession: GSM3164923 ID: 303164923 14395. mm_iBMDM_mutPparg_IL4_ATAC_rep2 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with E499Q mutant PPARg expressing lentivirus under the control of a doxycycline inducible promoter.. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097645 Sample Accession: GSM3164922 ID: 303164922 14396. mm_iBMDM_mutPparg_IL4_ATAC_rep1 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with E499Q mutant PPARg expressing lentivirus under the control of a doxycycline inducible promoter.. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097646 Sample Accession: GSM3164921 ID: 303164921 14397. mm_iBMDM_mutPparg_ctrl_ATAC_rep2 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with E499Q mutant PPARg expressing lentivirus under the control of a doxycycline inducible promoter.. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097647 Sample Accession: GSM3164920 ID: 303164920 14398. mm_iBMDM_mutPparg_ctrl_ATAC_rep1 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with E499Q mutant PPARg expressing lentivirus under the control of a doxycycline inducible promoter.. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164919/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097605 Sample Accession: GSM3164919 ID: 303164919 14399. mm_iBMDM_Luc_IL4_ATAC_rep2 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with a luciferase expressing lentivirus. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097608 Sample Accession: GSM3164918 ID: 303164918 14400. mm_iBMDM_Luc_IL4_ATAC_rep1 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with a luciferase expressing lentivirus. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097607 Sample Accession: GSM3164917 ID: 303164917 14401. mm_iBMDM_Luc_ctrl_ATAC_rep2 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with a luciferase expressing lentivirus. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097616 Sample Accession: GSM3164916 ID: 303164916 14402. mm_iBMDM_Luc_ctrl_ATAC_rep1 Organism: Mus musculus Source name: ATAC-Seq analysis of PpargKO immortalized BMDMs transduced with a luciferase expressing lentivirus. Platform: GPL17021 Series: GSE115085 GSE115505 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3164nnn/GSM3164915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3097615 Sample Accession: GSM3164915 ID: 303164915 14403. E2 delOS ESC ATAC-seq Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE97304 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2561nnn/GSM2561452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2695669 Sample Accession: GSM2561452 ID: 302561452 14404. WT ESC ATAC-seq Organism: Mus musculus Source name: embryonic stem cells Platform: GPL17021 Series: GSE97304 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2561nnn/GSM2561451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2695668 Sample Accession: GSM2561451 ID: 302561451 14405. ATAC-seq_Ssrp1-KD_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL17021 Series: GSE90906 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2872nnn/GSM2872496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3437618 Sample Accession: GSM2872496 ID: 302872496 14406. ATAC-seq_Ssrp1-KD_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL17021 Series: GSE90906 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2872nnn/GSM2872495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3437617 Sample Accession: GSM2872495 ID: 302872495 14407. ATAC-seq_Control_rep2 Organism: Mus musculus Source name: mESCs Platform: GPL17021 Series: GSE90906 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2872nnn/GSM2872494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3437616 Sample Accession: GSM2872494 ID: 302872494 14408. ATAC-seq_Control_rep1 Organism: Mus musculus Source name: mESCs Platform: GPL17021 Series: GSE90906 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2872nnn/GSM2872493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3437615 Sample Accession: GSM2872493 ID: 302872493 14409. EP_3_L input (ATAC-seq) Organism: Mus musculus Source name: Luminal mammary epithelial cells_input Platform: GPL13112 Series: GSE80181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2574899 Sample Accession: GSM2495194 ID: 302495194 14410. EP_3_B input (ATAC-seq) Organism: Mus musculus Source name: Basal or myoepithelial mammary epithelial cells_input Platform: GPL13112 Series: GSE80181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2574898 Sample Accession: GSM2495193 ID: 302495193 14411. EP_2_L input (ATAC-seq) Organism: Mus musculus Source name: Luminal mammary epithelial cells_input Platform: GPL13112 Series: GSE80181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2574897 Sample Accession: GSM2495192 ID: 302495192 14412. EP_2_B input (ATAC-seq) Organism: Mus musculus Source name: Basal or myoepithelial mammary epithelial cells_input Platform: GPL13112 Series: GSE80181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2574896 Sample Accession: GSM2495191 ID: 302495191 14413. EP_3_L (ATAC-seq) Organism: Mus musculus Source name: Luminal mammary epithelial cells Platform: GPL13112 Series: GSE80181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2574895 Sample Accession: GSM2495190 ID: 302495190 14414. EP_3_B (ATAC-seq) Organism: Mus musculus Source name: Basal or myoepithelial mammary epithelial cells Platform: GPL13112 Series: GSE80181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2574894 Sample Accession: GSM2495189 ID: 302495189 14415. EP_2_L (ATAC-seq) Organism: Mus musculus Source name: Luminal mammary epithelial cells Platform: GPL13112 Series: GSE80181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2574893 Sample Accession: GSM2495188 ID: 302495188 14416. EP_2_B (ATAC-seq) Organism: Mus musculus Source name: Basal or myoepithelial mammary epithelial cells Platform: GPL13112 Series: GSE80181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2574892 Sample Accession: GSM2495187 ID: 302495187 14417. ATAC-seq-FL-ProB Wt #3 Organism: Mus musculus Source name: Wt FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452686 Sample Accession: GSM2879251 ID: 302879251 14418. ATAC-seq-FL-ProB Wt #2 Organism: Mus musculus Source name: Wt FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452685 Sample Accession: GSM2879250 ID: 302879250 14419. ATAC-seq-FL-ProB Wt #1 Organism: Mus musculus Source name: Wt FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452684 Sample Accession: GSM2879249 ID: 302879249 14420. ATAC-seq-FL-ProB Pax5-/- #3 Organism: Mus musculus Source name: Pax5-/- FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452683 Sample Accession: GSM2879248 ID: 302879248 14421. ATAC-seq-FL-ProB Pax5-/- #2 Organism: Mus musculus Source name: Pax5-/- FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452682 Sample Accession: GSM2879247 ID: 302879247 14422. ATAC-seq-FL-ProB Pax5-/- #1 Organism: Mus musculus Source name: Pax5-/- FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452681 Sample Accession: GSM2879246 ID: 302879246 14423. ATAC-seq-FL-ProB Ebf1-/- #3 Organism: Mus musculus Source name: Ebf1-/- FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452680 Sample Accession: GSM2879245 ID: 302879245 14424. ATAC-seq-FL-ProB Ebf1-/- #2 Organism: Mus musculus Source name: Ebf1-/- FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452679 Sample Accession: GSM2879244 ID: 302879244 14425. ATAC-seq-FL-ProB Ebf1-/- #1 Organism: Mus musculus Source name: Ebf1-/- FL Platform: GPL19057 Series: GSE92434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3452678 Sample Accession: GSM2879243 ID: 302879243 14426. cell_lethal_ctrl_sample_b_10_eye-ant_discs Organism: Drosophila melanogaster Source name: eye-antennal discs Platform: GPL21306 Series: GSE102441 GSE108019 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2886nnn/GSM2886886/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467367 Sample Accession: GSM2886886 ID: 302886886 14427. cell_lethal_ctrl_sample_a_10_eye-ant_discs Organism: Drosophila melanogaster Source name: eye-antennal discs Platform: GPL21306 Series: GSE102441 GSE108019 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2886nnn/GSM2886885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467366 Sample Accession: GSM2886885 ID: 302886885 14428. cell_lethal-grh_mut_sample_b_10_eye-ant_discs Organism: Drosophila melanogaster Source name: eye-antennal discs Platform: GPL21306 Series: GSE102441 GSE108019 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2886nnn/GSM2886884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467365 Sample Accession: GSM2886884 ID: 302886884 14429. cell_lethal-grh_mut_sample_a_10_eye-ant_discs Organism: Drosophila melanogaster Source name: eye-antennal discs Platform: GPL21306 Series: GSE102441 GSE108019 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2886nnn/GSM2886883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467364 Sample Accession: GSM2886883 ID: 302886883 14430. UAS-grh_x_Ga99_sample_b_2_larval_brain Organism: Drosophila melanogaster Source name: 3rd instar larval brains Platform: GPL21306 Series: GSE102441 GSE108019 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2886nnn/GSM2886882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467363 Sample Accession: GSM2886882 ID: 302886882 14431. UAS-grh_x_Ga99_sample_a_2_larval_brain Organism: Drosophila melanogaster Source name: 3rd instar larval brains Platform: GPL21306 Series: GSE102441 GSE108019 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2886nnn/GSM2886881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467362 Sample Accession: GSM2886881 ID: 302886881 14432. Ga99_ctrl_sample_a_2_larval_brain Organism: Drosophila melanogaster Source name: 3rd instar larval brains Platform: GPL21306 Series: GSE102441 GSE108019 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2886nnn/GSM2886880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467361 Sample Accession: GSM2886880 ID: 302886880 14433. Aska-Del47 shSSX ATAC rep2 Organism: Homo sapiens Source name: Aska-Del47 shSSX ATAC-seq Platform: GPL18573 Series: GSE108028 GSE114487 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4085329 Sample Accession: GSM3142824 ID: 303142824 14434. Aska-Del47 shSSX ATAC rep1 Organism: Homo sapiens Source name: Aska-Del47 shSSX ATAC-seq Platform: GPL18573 Series: GSE108028 GSE114487 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3142nnn/GSM3142823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4085328 Sample Accession: GSM3142823 ID: 303142823 14435. Aska-Del47 shCt ATAC rep2 Organism: Homo sapiens Source name: Aska-Del47 shCt ATAC-seq Platform: GPL18573 Series: GSE108028 GSE114487 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4085327 Sample Accession: GSM3142822 ID: 303142822 14436. Aska-Del47 shCt ATAC rep1 Organism: Homo sapiens Source name: Aska-Del47 shCt ATAC-seq Platform: GPL18573 Series: GSE108028 GSE114487 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3142nnn/GSM3142821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4085326 Sample Accession: GSM3142821 ID: 303142821 14437. Aska shSSX ATAC rep2 Organism: Homo sapiens Source name: Aska shSSX ATAC-seq Platform: GPL18573 Series: GSE108028 GSE114487 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4085325 Sample Accession: GSM3142820 ID: 303142820 14438. Aska shSSX ATAC rep1 Organism: Homo sapiens Source name: Aska shSSX ATAC-seq Platform: GPL18573 Series: GSE108028 GSE114487 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3142nnn/GSM3142819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4085324 Sample Accession: GSM3142819 ID: 303142819 14439. Aska shCt ATAC rep2 Organism: Homo sapiens Source name: Aska shCt ATAC-seq Platform: GPL18573 Series: GSE108028 GSE114487 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4085323 Sample Accession: GSM3142818 ID: 303142818 14440. Aska shCt ATAC rep1 Organism: Homo sapiens Source name: Aska shCt ATAC-seq Platform: GPL18573 Series: GSE108028 GSE114487 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3142nnn/GSM3142817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4085322 Sample Accession: GSM3142817 ID: 303142817 14441. CD8m45_D35_3 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469049 Sample Accession: GSM2888562 ID: 302888562 14442. CD8m45_D35_2 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469048 Sample Accession: GSM2888561 ID: 302888561 14443. CD8m45_D35_1 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469047 Sample Accession: GSM2888560 ID: 302888560 14444. CD8m45_D7_3 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469046 Sample Accession: GSM2888559 ID: 302888559 14445. CD8m45_D7_2 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469045 Sample Accession: GSM2888558 ID: 302888558 14446. CD8m45_D7_1 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469044 Sample Accession: GSM2888557 ID: 302888557 14447. CD8_D0_3 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888556/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469043 Sample Accession: GSM2888556 ID: 302888556 14448. CD8_D0_2 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469042 Sample Accession: GSM2888555 ID: 302888555 14449. CD8_D0_1 [ATAC-seq] Organism: Mus musculus Source name: splenic CD8T cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469041 Sample Accession: GSM2888554 ID: 302888554 14450. NK_D35_3 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469040 Sample Accession: GSM2888553 ID: 302888553 14451. NK_D35_2 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469039 Sample Accession: GSM2888552 ID: 302888552 14452. NK_D35_1 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469038 Sample Accession: GSM2888551 ID: 302888551 14453. NK_D14_3 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469037 Sample Accession: GSM2888550 ID: 302888550 14454. NK_D14_2 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469036 Sample Accession: GSM2888549 ID: 302888549 14455. NK_D14_1 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469035 Sample Accession: GSM2888548 ID: 302888548 14456. NK_D7_4 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469034 Sample Accession: GSM2888547 ID: 302888547 14457. NK_D7_3 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469033 Sample Accession: GSM2888546 ID: 302888546 14458. NK_D7_2 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469032 Sample Accession: GSM2888545 ID: 302888545 14459. NK_D7_1 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469031 Sample Accession: GSM2888544 ID: 302888544 14460. NK_D4_3 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469030 Sample Accession: GSM2888543 ID: 302888543 14461. NK_D4_2 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469029 Sample Accession: GSM2888542 ID: 302888542 14462. NK_D4_1 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469028 Sample Accession: GSM2888541 ID: 302888541 14463. NK_D2_3 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469027 Sample Accession: GSM2888540 ID: 302888540 14464. NK_D2_2 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469026 Sample Accession: GSM2888539 ID: 302888539 14465. NK_D2_1 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469025 Sample Accession: GSM2888538 ID: 302888538 14466. NK_D0_3 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469024 Sample Accession: GSM2888537 ID: 302888537 14467. NK_D0_2 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469023 Sample Accession: GSM2888536 ID: 302888536 14468. NK_D0_1 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469022 Sample Accession: GSM2888535 ID: 302888535 14469. STAT1KO_HPOS_D2_003 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469021 Sample Accession: GSM2888534 ID: 302888534 14470. STAT1KO_HPOS_D2_001 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469020 Sample Accession: GSM2888533 ID: 302888533 14471. STAT1KO_HPOS_D0_003 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469019 Sample Accession: GSM2888532 ID: 302888532 14472. STAT1KO_HPOS_D0_002 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469018 Sample Accession: GSM2888531 ID: 302888531 14473. STAT1KO_HPOS_D0_001 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469017 Sample Accession: GSM2888530 ID: 302888530 14474. STAT1WT_HPOS_D2_003 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469016 Sample Accession: GSM2888529 ID: 302888529 14475. STAT1WT_HPOS_D2_002 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469015 Sample Accession: GSM2888528 ID: 302888528 14476. STAT1WT_HPOS_D2_001 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469014 Sample Accession: GSM2888527 ID: 302888527 14477. STAT1WT_HPOS_D0_003 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469013 Sample Accession: GSM2888526 ID: 302888526 14478. STAT1WT_HPOS_D0_002 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469012 Sample Accession: GSM2888525 ID: 302888525 14479. STAT1WT_HPOS_D0_001 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469011 Sample Accession: GSM2888524 ID: 302888524 14480. STAT4KO_HPOS_D2_003 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888523/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469010 Sample Accession: GSM2888523 ID: 302888523 14481. STAT4KO_HPOS_D2_002 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469009 Sample Accession: GSM2888522 ID: 302888522 14482. STAT4KO_HPOS_D2_001 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469008 Sample Accession: GSM2888521 ID: 302888521 14483. STAT4KO_HPOS_D0_003 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469007 Sample Accession: GSM2888520 ID: 302888520 14484. STAT4KO_HPOS_D0_002 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888519/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469006 Sample Accession: GSM2888519 ID: 302888519 14485. STAT4KO_HPOS_D0_001 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469005 Sample Accession: GSM2888518 ID: 302888518 14486. STAT4WT_HPOS_D2_003 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469004 Sample Accession: GSM2888517 ID: 302888517 14487. STAT4WT_HPOS_D2_002 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888516/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469003 Sample Accession: GSM2888516 ID: 302888516 14488. STAT4WT_HPOS_D2_001 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469002 Sample Accession: GSM2888515 ID: 302888515 14489. STAT4WT_HPOS_D0_003 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469001 Sample Accession: GSM2888514 ID: 302888514 14490. STAT4WT_HPOS_D0_002 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888513/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3469000 Sample Accession: GSM2888513 ID: 302888513 14491. STAT4WT_HPOS_D0_001 [ATAC-seq] Organism: Mus musculus Source name: splenic NK cells Platform: GPL17021 Series: GSE106139 GSE108051 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2888nnn/GSM2888512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3468999 Sample Accession: GSM2888512 ID: 302888512 14492. Neg-2-3_dNK Organism: Homo sapiens Source name: decidual Natural killer cells Platform: GPL18573 Series: GSE100636 FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2689nnn/GSM2689787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2966914 Sample Accession: GSM2689787 ID: 302689787 14493. Pos-2-4_dNK Organism: Homo sapiens Source name: decidual Natural killer cells Platform: GPL18573 Series: GSE100636 FTP download: GEO (BEDGRAPH, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2689nnn/GSM2689786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2966913 Sample Accession: GSM2689786 ID: 302689786 14494. GIST-48B ATAC Organism: Homo sapiens Source name: KIT-Independent GIST cell line Platform: GPL18573 Series: GSE95861 GSE95864 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2527nnn/GSM2527249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2628120 Sample Accession: GSM2527249 ID: 302527249 14495. GIST-T1 ATAC Organism: Homo sapiens Source name: KIT-dependent GIST cell line Platform: GPL18573 Series: GSE95861 GSE95864 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2527nnn/GSM2527248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2628119 Sample Accession: GSM2527248 ID: 302527248 14496. NKT2_SKG_rep3, ATAC-seq Organism: Mus musculus Source name: NKT2_SKG Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765685 Sample Accession: GSM3030636 ID: 303030636 14497. NKT2_SKG_rep2, ATAC-seq Organism: Mus musculus Source name: NKT2_SKG Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765684 Sample Accession: GSM3030635 ID: 303030635 14498. NKT2_SKG_rep1, ATAC-seq Organism: Mus musculus Source name: NKT2_SKG Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765683 Sample Accession: GSM3030634 ID: 303030634 14499. NKT2_BALB_rep1, ATAC-seq Organism: Mus musculus Source name: NKT2_BALB Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765682 Sample Accession: GSM3030633 ID: 303030633 14500. NKT2_BALB_rep3, ATAC-seq Organism: Mus musculus Source name: NKT2_BALB Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765681 Sample Accession: GSM3030632 ID: 303030632 14501. NKT2_BALB_rep2, ATAC-seq Organism: Mus musculus Source name: NKT2_BALB Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765680 Sample Accession: GSM3030631 ID: 303030631 14502. NKT1_SKG_rep2, ATAC-seq Organism: Mus musculus Source name: NKT1_SKG Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765679 Sample Accession: GSM3030630 ID: 303030630 14503. NKT1_SKG_rep1, ATAC-seq Organism: Mus musculus Source name: NKT1_SKG Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765678 Sample Accession: GSM3030629 ID: 303030629 14504. NKT1_BALB_rep2, ATAC-seq Organism: Mus musculus Source name: NKT1_BALB Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765677 Sample Accession: GSM3030628 ID: 303030628 14505. NKT1_BALB_rep1, ATAC-seq Organism: Mus musculus Source name: NKT1_BALB Platform: GPL17021 Series: GSE111427 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3765676 Sample Accession: GSM3030627 ID: 303030627 14506. SPRET_BMDM_ATAC_notx_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL19057 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637503 Sample Accession: GSM2974844 ID: 302974844 14507. SPRET_BMDM_ATAC_KLA_1h_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL19057 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637500 Sample Accession: GSM2974841 ID: 302974841 14508. PWK_BMDM_ATAC_notx_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL19057 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637452 Sample Accession: GSM2974793 ID: 302974793 14509. NOD_BMDM_ATAC_notx_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL19057 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637404 Sample Accession: GSM2974744 ID: 302974744 14510. NOD_BMDM_ATAC_KLA_1h_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL19057 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637403 Sample Accession: GSM2974743 ID: 302974743 14511. NOD_BMDM_ATAC_KLA_1h_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL19057 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637402 Sample Accession: GSM2974742 ID: 302974742 14512. BALB_BMDM_ATAC_notx_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL19057 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637261 Sample Accession: GSM2974602 ID: 302974602 14513. SPRET_BMDM_ATAC_notx_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637502 Sample Accession: GSM2974843 ID: 302974843 14514. SPRET_BMDM_ATAC_KLA_1h_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637501 Sample Accession: GSM2974842 ID: 302974842 14515. PWK_BMDM_ATAC_notx_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637453 Sample Accession: GSM2974794 ID: 302974794 14516. PWK_BMDM_ATAC_KLA_1h_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637451 Sample Accession: GSM2974792 ID: 302974792 14517. PWK_BMDM_ATAC_KLA_1h_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637450 Sample Accession: GSM2974791 ID: 302974791 14518. NOD_BMDM_ATAC_notx_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637405 Sample Accession: GSM2974745 ID: 302974745 14519. C57_BMDM_ATAC_notx_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637314 Sample Accession: GSM2974654 ID: 302974654 14520. C57_BMDM_ATAC_notx_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637313 Sample Accession: GSM2974653 ID: 302974653 14521. C57_BMDM_ATAC_KLA_1h_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637312 Sample Accession: GSM2974652 ID: 302974652 14522. C57_BMDM_ATAC_KLA_1h_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637311 Sample Accession: GSM2974651 ID: 302974651 14523. BALB_BMDM_ATAC_notx_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637262 Sample Accession: GSM2974603 ID: 302974603 14524. BALB_BMDM_ATAC_KLA_1h_rep2 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637260 Sample Accession: GSM2974601 ID: 302974601 14525. BALB_BMDM_ATAC_KLA_1h_rep1 Organism: Mus musculus Source name: bone marrow derived macropages (BMDM) Platform: GPL21103 Series: GSE109965 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3637259 Sample Accession: GSM2974600 ID: 302974600 14526. ATACseq_HMLE_TGFbeta Organism: Homo sapiens Source name: HMLE breast cancer cell line Platform: GPL16791 Series: GSE114397 FTP download: GEO (TSV, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3141nnn/GSM3141015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4080316 Sample Accession: GSM3141015 ID: 303141015 14527. InDrop_Zeb1_Dox Organism: Homo sapiens Source name: HMLE breast cancer cell line Platform: GPL16791 Series: GSE114397 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3141nnn/GSM3141014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4080315 Sample Accession: GSM3141014 ID: 303141014 14528. InDrop_HMLE_TGFbeta_day10 Organism: Homo sapiens Source name: HMLE breast cancer cell line Platform: GPL16791 Series: GSE114397 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4080314 Sample Accession: GSM3141013 ID: 303141013 14529. InDrop_HMLE_TGFbeta_day8 Organism: Homo sapiens Source name: HMLE breast cancer cell line Platform: GPL16791 Series: GSE114397 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4080313 Sample Accession: GSM3141012 ID: 303141012 14530. ATAC-seq from A549 (ENCLB846KGA) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 4 hours Platform: GPL20301 Series: GSE114205 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061436 Sample Accession: GSM3137790 ID: 303137790 14531. ATAC-seq from A549 (ENCLB804WMR) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 4 hours Platform: GPL20301 Series: GSE114205 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061435 Sample Accession: GSM3137789 ID: 303137789 14532. ATAC-seq from A549 (ENCLB330STL) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 4 hours Platform: GPL20301 Series: GSE114205 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061434 Sample Accession: GSM3137788 ID: 303137788 14533. ATAC-seq from A549 (ENCLB622FZX) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 12 hours Platform: GPL20301 Series: GSE114204 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061433 Sample Accession: GSM3137787 ID: 303137787 14534. ATAC-seq from A549 (ENCLB969KTX) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 12 hours Platform: GPL20301 Series: GSE114204 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061432 Sample Accession: GSM3137786 ID: 303137786 14535. ATAC-seq from A549 (ENCLB170KFO) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 12 hours Platform: GPL20301 Series: GSE114204 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061431 Sample Accession: GSM3137785 ID: 303137785 14536. ATAC-seq from A549 (ENCLB514OGC) Organism: Homo sapiens Source name: Homo sapiens A549 cell line Platform: GPL20301 Series: GSE114202 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061430 Sample Accession: GSM3137778 ID: 303137778 14537. ATAC-seq from A549 (ENCLB768JUJ) Organism: Homo sapiens Source name: Homo sapiens A549 cell line Platform: GPL20301 Series: GSE114202 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061429 Sample Accession: GSM3137777 ID: 303137777 14538. ATAC-seq from A549 (ENCLB522HCS) Organism: Homo sapiens Source name: Homo sapiens A549 cell line Platform: GPL20301 Series: GSE114202 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061428 Sample Accession: GSM3137776 ID: 303137776 14539. ATAC-seq from A549 (ENCLB072IUX) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 1 hour Platform: GPL20301 Series: GSE114201 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061424 Sample Accession: GSM3137775 ID: 303137775 14540. ATAC-seq from A549 (ENCLB287TUS) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 1 hour Platform: GPL20301 Series: GSE114201 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061423 Sample Accession: GSM3137774 ID: 303137774 14541. ATAC-seq from A549 (ENCLB371TNS) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 1 hour Platform: GPL20301 Series: GSE114201 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061422 Sample Accession: GSM3137773 ID: 303137773 14542. ATAC-seq from A549 (ENCLB870IBA) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 8 hours Platform: GPL20301 Series: GSE114200 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061421 Sample Accession: GSM3137772 ID: 303137772 14543. ATAC-seq from A549 (ENCLB541HCS) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 8 hours Platform: GPL20301 Series: GSE114200 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061420 Sample Accession: GSM3137771 ID: 303137771 14544. ATAC-seq from A549 (ENCLB501QMW) Organism: Homo sapiens Source name: Homo sapiens A549 cell line treated with 100 nM dexamethasone for 8 hours Platform: GPL20301 Series: GSE114200 FTP download: GEO (BED, BIGBED, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3137nnn/GSM3137770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4061419 Sample Accession: GSM3137770 ID: 303137770 14545. Human_naive_hESC1_ATAC-Seq Organism: Homo sapiens Source name: Embryonic stem cell Platform: GPL11154 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2721nnn/GSM2721905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3045632 Sample Accession: GSM2721905 ID: 302721905 14546. Human_naive_hESC2_ATAC-Seq Organism: Homo sapiens Source name: Embryonic stem cell Platform: GPL11154 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2721nnn/GSM2721904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3045631 Sample Accession: GSM2721904 ID: 302721904 14547. Human_8-cell_RNA-Seq_re2 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013869 Sample Accession: GSM2706243 ID: 302706243 14548. Human_8-cell_RNA-Seq_re1 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013868 Sample Accession: GSM2706242 ID: 302706242 14549. Human_8-cell_3PN_ATAC-Seq_re2 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013854 Sample Accession: GSM2706228 ID: 302706228 14550. Human_8-cell_3PN_ATAC-Seq_re1 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013853 Sample Accession: GSM2706227 ID: 302706227 14551. Human_8-cell_ATAC-Seq_re2 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013852 Sample Accession: GSM2706226 ID: 302706226 14552. Human_8-cell_ATAC-Seq_re1 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013851 Sample Accession: GSM2706225 ID: 302706225 14553. Human_4-cell_3PN_ATAC-Seq_re2 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013850 Sample Accession: GSM2706224 ID: 302706224 14554. Human_4-cell_3PN_ATAC-Seq_re1 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013849 Sample Accession: GSM2706223 ID: 302706223 14555. Human_2-cell_3PN_ATAC-Seq_re2 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013848 Sample Accession: GSM2706222 ID: 302706222 14556. Human_2-cell_3PN_ATAC-Seq_re1 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013847 Sample Accession: GSM2706221 ID: 302706221 14557. Human_2-cell_ATAC-Seq_re2 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013846 Sample Accession: GSM2706220 ID: 302706220 14558. Human_2-cell_ATAC-Seq_re1 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL11154 Series: GSE101571 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3013845 Sample Accession: GSM2706219 ID: 302706219 14559. Human_ICM_3PN_ATAC-Seq_re2 Organism: Homo sapiens Source name: human embryo Platform: GPL16791 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3081nnn/GSM3081009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3884852 Sample Accession: GSM3081009 ID: 303081009 14560. Human_ICM_3PN_ATAC-Seq_re1 Organism: Homo sapiens Source name: human embryo Platform: GPL16791 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3081nnn/GSM3081008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3884851 Sample Accession: GSM3081008 ID: 303081008 14561. Human_zygote_3PN_ATAC-Seq Organism: Homo sapiens Source name: Human_zygote_3PN_ATAC-seq Platform: GPL16791 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942347/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590805 Sample Accession: GSM2942347 ID: 302942347 14562. Human_8-cell_3PN_ATAC-seq_amanitin_re3 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL16791 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590804 Sample Accession: GSM2942346 ID: 302942346 14563. Human_8-cell_3PN_ATAC-seq_amanitin_re2 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL16791 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590803 Sample Accession: GSM2942345 ID: 302942345 14564. Human_8-cell_3PN_ATAC-seq_amanitin_re1 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL16791 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590802 Sample Accession: GSM2942344 ID: 302942344 14565. Human_8-cell_3PN_ATAC-seq_Ctrl_re2 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL16791 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590801 Sample Accession: GSM2942343 ID: 302942343 14566. Human_8-cell_3PN_ATAC-seq_Ctrl_re1 Organism: Homo sapiens Source name: Preimplantation embryo Platform: GPL16791 Series: GSE101571 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2942nnn/GSM2942342/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590800 Sample Accession: GSM2942342 ID: 302942342 14567. ATAC-seq AI-10-49 rep2 Organism: Homo sapiens Source name: ME-1_AI-10-49_ATAC-seq Platform: GPL11154 Series: GSE101790 GSE101791 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2715nnn/GSM2715544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3030218 Sample Accession: GSM2715544 ID: 302715544 14568. ATAC-seq AI-10-49 rep1 Organism: Homo sapiens Source name: ME-1_AI-10-49_ATAC-seq Platform: GPL11154 Series: GSE101790 GSE101791 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2715nnn/GSM2715543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3030217 Sample Accession: GSM2715543 ID: 302715543 14569. ATAC-seq DMSO rep2 Organism: Homo sapiens Source name: ME-1_DMSO_ATAC-seq Platform: GPL11154 Series: GSE101790 GSE101791 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2715nnn/GSM2715542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3030216 Sample Accession: GSM2715542 ID: 302715542 14570. ATAC-seq DMSO rep1 Organism: Homo sapiens Source name: ME-1_DMSO_ATAC-seq Platform: GPL11154 Series: GSE101790 GSE101791 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2715nnn/GSM2715541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3030215 Sample Accession: GSM2715541 ID: 302715541 14571. Uhrf1 KO mESC [ATAC-Seq] Organism: Mus musculus Source name: Uhrf1 KO E14 mESC Platform: GPL13112 Series: GSE113912 GSE113915 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3123nnn/GSM3123474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4017931 Sample Accession: GSM3123474 ID: 303123474 14572. WT mESC [ATAC-Seq] Organism: Mus musculus Source name: E14 mESC Platform: GPL13112 Series: GSE113912 GSE113915 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3123nnn/GSM3123473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX4017930 Sample Accession: GSM3123473 ID: 303123473 14573. A_WT2_gRNA_Chd4_1 Organism: Mus musculus Source name: Lin- BM progenitors (HSPCs) Platform: GPL13112 Series: GSE101307 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2739nnn/GSM2739499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3085810 Sample Accession: GSM2739499 ID: 302739499 14574. A_WT2_empty Organism: Mus musculus Source name: Lin- BM progenitors (HSPCs) Platform: GPL13112 Series: GSE101307 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2739nnn/GSM2739498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3085809 Sample Accession: GSM2739498 ID: 302739498 14575. A_WT1_gRNA_Chd4_1 Organism: Mus musculus Source name: Lin- BM progenitors (HSPCs) Platform: GPL13112 Series: GSE101307 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2739nnn/GSM2739497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3085808 Sample Accession: GSM2739497 ID: 302739497 14576. A_WT1_empty Organism: Mus musculus Source name: Lin- BM progenitors (HSPCs) Platform: GPL13112 Series: GSE101307 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2739nnn/GSM2739496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3085807 Sample Accession: GSM2739496 ID: 302739496 14577. ATAC-seq in hindbrain samples from 24hpf zebrafish embryos, replicate 2 Organism: Danio rerio Source name: ATAC-seq in hindbrain samples from 24hpf zebrafish embryos Platform: GPL18413 Series: GSE109219 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2935nnn/GSM2935527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3585015 Sample Accession: GSM2935527 ID: 302935527 14578. ATAC-seq in hindbrain samples from 24hpf zebrafish embryos, replicate 1 Organism: Danio rerio Source name: ATAC-seq in hindbrain samples from 24hpf zebrafish embryos Platform: GPL18413 Series: GSE109219 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2935nnn/GSM2935526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3585014 Sample Accession: GSM2935526 ID: 302935526 14579. mTFAP2A-/- mTFAP2C-/- Line 2 2i+LIF Replicate 2 ATAC [ATAC-Seq] Organism: Mus musculus Source name: Control transfected (twice) V6.5 mESCs cultured for eight passages in 2i+LIF media Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993576 Sample Accession: GSM2698939 ID: 302698939 14580. mTFAP2A-/- mTFAP2C-/- Line 1 2i+LIF Replicate 2 ATAC [ATAC-Seq] Organism: Mus musculus Source name: Control transfected (twice) V6.5 mESCs cultured for eight passages in 2i+LIF media Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993575 Sample Accession: GSM2698938 ID: 302698938 14581. Serial Control Transfection Line 2 2i+LIF Replicate 2 ATAC [ATAC-Seq] Organism: Mus musculus Source name: TFAP2A/2C doubly deficient mESCs cultured for eight passages in 2i+LIF Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993574 Sample Accession: GSM2698937 ID: 302698937 14582. Serial Control Transfection Line 1 2i+LIF Replicate 2 ATAC [ATAC-Seq] Organism: Mus musculus Source name: TFAP2A/2C doubly deficient mESCs cultured for eight passages in 2i+LIF Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993573 Sample Accession: GSM2698936 ID: 302698936 14583. mTFAP2A-/- mTFAP2C-/- Line 2 2i+LIF Replicate 1 ATAC [ATAC-Seq] Organism: Mus musculus Source name: Control transfected (twice) V6.5 mESCs cultured for seven passages in 2i+LIF media Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993572 Sample Accession: GSM2698935 ID: 302698935 14584. mTFAP2A-/- mTFAP2C-/- Line 1 2i+LIF Replicate 1 ATAC [ATAC-Seq] Organism: Mus musculus Source name: Control transfected (twice) V6.5 mESCs cultured for seven passages in 2i+LIF media Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993571 Sample Accession: GSM2698934 ID: 302698934 14585. Serial Control Transfection Line 2 2i+LIF Replicate 1 ATAC [ATAC-Seq] Organism: Mus musculus Source name: TFAP2A/2C doubly deficient mESCs cultured for seven passages in 2i+LIF Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993570 Sample Accession: GSM2698933 ID: 302698933 14586. Serial Control Transfection Line 1 2i+LIF Replicate 1 ATAC [ATAC-Seq] Organism: Mus musculus Source name: TFAP2A/2C doubly deficient mESCs cultured for seven passages in 2i+LIF Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993569 Sample Accession: GSM2698932 ID: 302698932 14587. EpiSC Technical Replicate 2 ATAC [ATAC-Seq] Organism: Mus musculus Source name: EpiSC line from P. Tesar Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993568 Sample Accession: GSM2698931 ID: 302698931 14588. EpiSC Technical Replicate 1 ATAC [ATAC-Seq] Organism: Mus musculus Source name: EpiSC line from P. Tesar Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993567 Sample Accession: GSM2698930 ID: 302698930 14589. 2i+LIF Technical Replicate 2 ATAC [ATAC-Seq] Organism: Mus musculus Source name: V6.5 mESCs cultured in 2i+LIF conditions Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993566 Sample Accession: GSM2698929 ID: 302698929 14590. 2i+LIF Technical Replicate 1 ATAC [ATAC-Seq] Organism: Mus musculus Source name: V6.5 mESCs cultured in 2i+LIF conditions Platform: GPL17021 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993565 Sample Accession: GSM2698928 ID: 302698928 14591. TFAP2C-/- Line 2 5iLAF 5% O2 SSEA4 Plus Reversion 1 [ATAC-Seq] Organism: Homo sapiens Source name: TFAP2C-/- UCLA1 line 1, cultured for five passages (34d) in 5iLAF in 5% O2. TRA-1-85+ cells (human) were then sorted into SSEA4 negative and positive cell populations. Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509018 Sample Accession: GSM2901722 ID: 302901722 14592. TFAP2C-/- Line 1 5iLAF 5% O2 SSEA4 Minus Reversion 1 [ATAC-Seq] Organism: Homo sapiens Source name: TFAP2C-/- UCLA1 line 1, cultured for five passages (34d) in 5iLAF in 5% O2. TRA-1-85+ cells (human) were then sorted into SSEA4 negative and positive cell populations. Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509017 Sample Accession: GSM2901721 ID: 302901721 14593. Control Line 1 5iLAF 5% O2 SSEA4 Plus Reversion 1 [ATAC-Seq] Organism: Homo sapiens Source name: Control nucleofected UCLA1 line cultured for five passages (34d) in 5iLAF in 5% O2. TRA-1-85+ cells (human) were then sorted into SSEA4 negative and positive cell populations. Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509016 Sample Accession: GSM2901720 ID: 302901720 14594. Control Line 1 5iLAF 5% O2 SSEA4 Minus Reversion 1 [ATAC-Seq] Organism: Homo sapiens Source name: Control nucleofected UCLA1 line cultured for five passages (34d) in 5iLAF in 5% O2. TRA-1-85+ cells (human) were then sorted into SSEA4 negative and positive cell populations. Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509015 Sample Accession: GSM2901719 ID: 302901719 14595. Primed Control for 5% O2 samples Reversion 1 [ATAC-Seq] Organism: Homo sapiens Source name: Primed SSEA4+ UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509014 Sample Accession: GSM2901718 ID: 302901718 14596. TFAP2C-/- Dox withdrawn 5iLAF SSEA4 Plus [ATAC-Seq] Organism: Homo sapiens Source name: TFAP2C-/- UCLA1 hESCs transduced with construct allowing dox inducible expression of TFAP2C; cells treated 15d with 5iLAF media & 0.25μg/mL dox, then 12d with 5iLAF media only; cells harvested and TRA-1-85+ cells subsorted into SSEA4 + and - populations Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509013 Sample Accession: GSM2901717 ID: 302901717 14597. TFAP2C-/- Dox withdrawn 5iLAF SSEA4 Minus [ATAC-Seq] Organism: Homo sapiens Source name: TFAP2C-/- UCLA1 hESCs transduced with construct allowing dox inducible expression of TFAP2C; cells treated 15d with 5iLAF media & 0.25μg/mL dox, then 12d with 5iLAF media only; cells harvested and TRA-1-85+ cells subsorted into SSEA4 + and - populations Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509012 Sample Accession: GSM2901716 ID: 302901716 14598. TFAP2C-/- Dox Induc 5iLAF SSEA4 Plus [ATAC-Seq] Organism: Homo sapiens Source name: TFAP2C-/- UCLA1 hESCs transduced with construct allowing doxycycline inducible expression of TFAP2C; cells treated for 5 passages (27 days) with 5iLAF media and 0.25μg/mL doxycycline, then TRA-1-85+ (human) cells subsorted into SSEA4 + and - populations Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509011 Sample Accession: GSM2901715 ID: 302901715 14599. TFAP2C-/- Dox Induc 5iLAF SSEA4 Minus [ATAC-Seq] Organism: Homo sapiens Source name: TFAP2C-/- UCLA1 hESCs transduced with construct allowing doxycycline inducible expression of TFAP2C; cells treated for 5 passages (27 days) with 5iLAF media and 0.25μg/mL doxycycline, then TRA-1-85+ (human) cells subsorted into SSEA4 + and - populations Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509010 Sample Accession: GSM2901714 ID: 302901714 14600. Control Line 1 5iLAF SSEA4 Plus [ATAC-Seq] Organism: Homo sapiens Source name: Control nucleofected UCLA1 line cultured for five passages (27d) in LAF. Tra-1-85 positive (human) cells were sorted into positive and negative populations Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509009 Sample Accession: GSM2901713 ID: 302901713 14601. Control Line 1 5iLAF SSEA4 Minus [ATAC-Seq] Organism: Homo sapiens Source name: Control nucleofected UCLA1 line cultured for five passages (27d) in LAF. Tra-1-85 positive (human) cells were sorted into positive and negative populations Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509008 Sample Accession: GSM2901712 ID: 302901712 14602. Primed Control for Withdrawal Experiment [ATAC-Seq] Organism: Homo sapiens Source name: Primed SSEA4+ UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2901nnn/GSM2901711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3509007 Sample Accession: GSM2901711 ID: 302901711 14603. Eight Blastocysts ATAC [ATAC-Seq] Organism: Homo sapiens Source name: Eight day Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993564 Sample Accession: GSM2698927 ID: 302698927 14604. TFAP2C-/- Line 2 5d 5iLAF treatment ATAC [ATAC-Seq] Organism: Homo sapiens Source name: TFAP2C knockout line 2 UCLA hESCs cultured for 5 days Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993563 Sample Accession: GSM2698926 ID: 302698926 14605. TFAP2C-/- Line 1 5d 5iLAF treatment ATAC [ATAC-Seq] Organism: Homo sapiens Source name: TFAP2C knockout line 1 UCLA hESCs cultured for 5 days Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993562 Sample Accession: GSM2698925 ID: 302698925 14606. Control transfected cells, 5d 5iLAF treatment ATAC [ATAC-Seq] Organism: Homo sapiens Source name: Control transfected UCLA1 hESCs cultured for 5 days in 5iLAF Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993561 Sample Accession: GSM2698924 ID: 302698924 14607. Untransfected cells, 5d 5iLAF treatment ATAC [ATAC-Seq] Organism: Homo sapiens Source name: Untransfected UCLA1 hESCs cultured for 5 days in 5iLAF Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993560 Sample Accession: GSM2698923 ID: 302698923 14608. Naïve hESCs Replicate 4 ATAC [ATAC-Seq] Organism: Homo sapiens Source name: SSEA4- 5iLAF cultured UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993559 Sample Accession: GSM2698922 ID: 302698922 14609. Naïve hESCs Replicate 3 ATAC [ATAC-Seq] Organism: Homo sapiens Source name: SSEA4- 5iLAF cultured UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993558 Sample Accession: GSM2698921 ID: 302698921 14610. Naïve hESCs Replicate 2 ATAC [ATAC-Seq] Organism: Homo sapiens Source name: SSEA4- 5iLAF cultured UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993557 Sample Accession: GSM2698920 ID: 302698920 14611. Naïve hESCs Replicate 1 ATAC [ATAC-Seq] Organism: Homo sapiens Source name: SSEA4- 5iLAF cultured UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698919/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993556 Sample Accession: GSM2698919 ID: 302698919 14612. Primed hESCs Replicate 4 ATAC [ATAC-Seq] Organism: Homo sapiens Source name: Primed SSEA4+ UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993555 Sample Accession: GSM2698918 ID: 302698918 14613. Primed hESCs Replicate 3 ATAC [ATAC-Seq] Organism: Homo sapiens Source name: Primed SSEA4+ UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993554 Sample Accession: GSM2698917 ID: 302698917 14614. Primed hESCs Replicate 2 ATAC [ATAC-Seq] Organism: Homo sapiens Source name: Primed SSEA4+ UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993553 Sample Accession: GSM2698916 ID: 302698916 14615. Primed hESCs Replicate 1 ATAC [ATAC-Seq] Organism: Homo sapiens Source name: Primed SSEA4+ UCLA1 hESCs Platform: GPL16791 Series: GSE101074 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2698nnn/GSM2698915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2993552 Sample Accession: GSM2698915 ID: 302698915 14616. tSH2Δ mutant Rep3 ATAC Organism: Saccharomyces cerevisiae Source name: tSH2Δ mutant Rep3 ATAC Platform: GPL17342 Series: GSE111815 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789223 Sample Accession: GSM3040135 ID: 303040135 14617. tSH2Δ mutant Rep2 ATAC Organism: Saccharomyces cerevisiae Source name: tSH2Δ mutant Rep2 ATAC Platform: GPL17342 Series: GSE111815 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789222 Sample Accession: GSM3040134 ID: 303040134 14618. tSH2Δ mutant Rep1 ATAC Organism: Saccharomyces cerevisiae Source name: tSH2Δ mutant Rep1 ATAC Platform: GPL17342 Series: GSE111815 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789221 Sample Accession: GSM3040133 ID: 303040133 14619. WT Rep3 ATAC Organism: Saccharomyces cerevisiae Source name: WT Rep3 ATAC Platform: GPL17342 Series: GSE111815 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789220 Sample Accession: GSM3040132 ID: 303040132 14620. WT Rep2 ATAC Organism: Saccharomyces cerevisiae Source name: WT Rep2 ATAC Platform: GPL17342 Series: GSE111815 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789219 Sample Accession: GSM3040131 ID: 303040131 14621. WT Rep1 ATAC Organism: Saccharomyces cerevisiae Source name: WT Rep1 ATAC Platform: GPL17342 Series: GSE111815 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3040nnn/GSM3040130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789218 Sample Accession: GSM3040130 ID: 303040130 14622. tSH2Δ mutant Rep3 RNA Organism: Saccharomyces cerevisiae Source name: tSH2Δ mutant Rep3 RNA Platform: GPL17342 Series: GSE111815 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789217 Sample Accession: GSM3040129 ID: 303040129 14623. tSH2Δ mutant Rep2 RNA Organism: Saccharomyces cerevisiae Source name: tSH2Δ mutant Rep2 RNA Platform: GPL17342 Series: GSE111815 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789216 Sample Accession: GSM3040128 ID: 303040128 14624. tSH2Δ mutant Rep1 RNA Organism: Saccharomyces cerevisiae Source name: tSH2Δ mutant Rep1 RNA Platform: GPL17342 Series: GSE111815 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789215 Sample Accession: GSM3040127 ID: 303040127 14625. WT Rep3 RNA Organism: Saccharomyces cerevisiae Source name: WT Rep3 RNA Platform: GPL17342 Series: GSE111815 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789214 Sample Accession: GSM3040126 ID: 303040126 14626. WT Rep2 RNA Organism: Saccharomyces cerevisiae Source name: WT Rep2 RNA Platform: GPL17342 Series: GSE111815 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789213 Sample Accession: GSM3040125 ID: 303040125 14627. WT Rep1 RNA Organism: Saccharomyces cerevisiae Source name: WT Rep1 RNA Platform: GPL17342 Series: GSE111815 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3789212 Sample Accession: GSM3040124 ID: 303040124 14628. Pf-3D7-t40, ATACseq, replicate2 Organism: Plasmodium falciparum Source name: red blood cell stage, 32-40 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2987nnn/GSM2987668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3664047 Sample Accession: GSM2987668 ID: 302987668 14629. Pf-3D7-t35, ATACseq, replicate2 Organism: Plasmodium falciparum Source name: red blood cell stage, 27-35 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2987nnn/GSM2987667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3664046 Sample Accession: GSM2987667 ID: 302987667 14630. Pf-3D7-t30, ATACseq, replicate2 Organism: Plasmodium falciparum Source name: red blood cell stage, 22-30 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2987nnn/GSM2987666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3664045 Sample Accession: GSM2987666 ID: 302987666 14631. Pf-3D7-t25, ATACseq, replicate2 Organism: Plasmodium falciparum Source name: red blood cell stage, 17-25 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2987nnn/GSM2987665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3664044 Sample Accession: GSM2987665 ID: 302987665 14632. Pf-3D7-t20, ATACseq, replicate2 Organism: Plasmodium falciparum Source name: red blood cell stage, 12-20 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2987nnn/GSM2987664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3664043 Sample Accession: GSM2987664 ID: 302987664 14633. Pf-3D7-t15, ATACseq, replicate2 Organism: Plasmodium falciparum Source name: red blood cell stage, 7-15 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2987nnn/GSM2987663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3664042 Sample Accession: GSM2987663 ID: 302987663 14634. Pf-3D7-t10, ATACseq, replicate2 Organism: Plasmodium falciparum Source name: red blood cell stage, 2-10 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2987nnn/GSM2987662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3664041 Sample Accession: GSM2987662 ID: 302987662 14635. Pf-3D7-t05, ATACseq, replicate2 Organism: Plasmodium falciparum Source name: red blood cell stage, 40-5 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2987nnn/GSM2987661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3664040 Sample Accession: GSM2987661 ID: 302987661 14636. Pf-3D7-t40, dirRNAseq Organism: Plasmodium falciparum Source name: red blood cell stage, 32-40 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202273 Sample Accession: GSM2789038 ID: 302789038 14637. Pf-3D7-t35, dirRNAseq Organism: Plasmodium falciparum Source name: red blood cell stage, 27-35 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202272 Sample Accession: GSM2789037 ID: 302789037 14638. Pf-3D7-t30, dirRNAseq Organism: Plasmodium falciparum Source name: red blood cell stage, 22-30 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202271 Sample Accession: GSM2789036 ID: 302789036 14639. Pf-3D7-t25, dirRNAseq Organism: Plasmodium falciparum Source name: red blood cell stage, 17-25 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202270 Sample Accession: GSM2789035 ID: 302789035 14640. Pf-3D7-t20, dirRNAseq Organism: Plasmodium falciparum Source name: red blood cell stage, 12-20 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202269 Sample Accession: GSM2789034 ID: 302789034 14641. Pf-3D7-t15, dirRNAseq Organism: Plasmodium falciparum Source name: red blood cell stage, 7-15 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202268 Sample Accession: GSM2789033 ID: 302789033 14642. Pf-3D7-t10, dirRNAseq Organism: Plasmodium falciparum Source name: red blood cell stage, 2-10 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202267 Sample Accession: GSM2789032 ID: 302789032 14643. Pf-3D7-t05, dirRNAseq Organism: Plasmodium falciparum Source name: red blood cell stage, 40-5 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202266 Sample Accession: GSM2789031 ID: 302789031 14644. Pf-3D7-gDNA-b, ATACseq Organism: Plasmodium falciparum Source name: genomic DNA red blood cell stage, 0-20 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202265 Sample Accession: GSM2789030 ID: 302789030 14645. Pf-3D7-gDNA-a, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 0-20 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202264 Sample Accession: GSM2789029 ID: 302789029 14646. Pf-3D7-t40, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 32-40 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202263 Sample Accession: GSM2789028 ID: 302789028 14647. Pf-3D7-t35, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 27-35 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202262 Sample Accession: GSM2789027 ID: 302789027 14648. Pf-3D7-t30, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 22-30 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202261 Sample Accession: GSM2789026 ID: 302789026 14649. Pf-3D7-t25, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 17-25 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202260 Sample Accession: GSM2789025 ID: 302789025 14650. Pf-3D7-t20, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 12-20 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202259 Sample Accession: GSM2789024 ID: 302789024 14651. Pf-3D7-t15, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 7-15 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202258 Sample Accession: GSM2789023 ID: 302789023 14652. Pf-3D7-t10, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 2-10 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202257 Sample Accession: GSM2789022 ID: 302789022 14653. Pf-3D7-t05, ATACseq Organism: Plasmodium falciparum Source name: red blood cell stage, 40-5 hours post invasion Platform: GPL21298 Series: GSE104075 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2789nnn/GSM2789021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3202256 Sample Accession: GSM2789021 ID: 302789021 14654. combo [ATAC-Seq] Organism: Mus musculus Source name: TIL Platform: GPL21273 Series: GSE110251 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2983nnn/GSM2983248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3663093 Sample Accession: GSM2983248 ID: 302983248 14655. anti_PD1 [ATAC-Seq] Organism: Mus musculus Source name: TIL Platform: GPL21273 Series: GSE110251 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2983nnn/GSM2983247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3663092 Sample Accession: GSM2983247 ID: 302983247 14656. anti_B7S1 [ATAC-Seq] Organism: Mus musculus Source name: TIL Platform: GPL21273 Series: GSE110251 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2983nnn/GSM2983246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3663091 Sample Accession: GSM2983246 ID: 302983246 14657. Control [ATAC-Seq] Organism: Mus musculus Source name: TIL Platform: GPL21273 Series: GSE110251 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2983nnn/GSM2983245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3663090 Sample Accession: GSM2983245 ID: 302983245 14658. Other, non-PMC cells isolated from 24 hpf embryos, replicate 2 Organism: Strongylocentrotus purpuratus Source name: 24 hours post fertilization isolated non-PMC cells Platform: GPL23218 Series: GSE96927 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2546nnn/GSM2546194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661971 Sample Accession: GSM2546194 ID: 302546194 14659. Other, non-PMC cells isolated from 24 hpf embryos, replicate 1 Organism: Strongylocentrotus purpuratus Source name: 24 hours post fertilization isolated non-PMC cells Platform: GPL23218 Series: GSE96927 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2546nnn/GSM2546193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661970 Sample Accession: GSM2546193 ID: 302546193 14660. PMCs isolated from 24 hpf embryos, replicate 2 Organism: Strongylocentrotus purpuratus Source name: 24 hours post fertilization isolated PMC cells Platform: GPL23218 Series: GSE96927 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2546nnn/GSM2546192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661969 Sample Accession: GSM2546192 ID: 302546192 14661. PMCs isolated from 24 hpf embryos, replicate 1 Organism: Strongylocentrotus purpuratus Source name: 24 hours post fertilization isolated PMC cells Platform: GPL23218 Series: GSE96927 FTP download: GEO (BED, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2546nnn/GSM2546191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661968 Sample Accession: GSM2546191 ID: 302546191 14662. HIV_RAL_48h_D225 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 48, drug: Raltegravir, donor: D225 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947523 Sample Accession: GSM2679760 ID: 302679760 14663. HIV_RAL_32h_D225 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 32, drug: Raltegravir, donor: D225 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947522 Sample Accession: GSM2679759 ID: 302679759 14664. HIV_RAL_16h_D225 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 16, drug: Raltegravir, donor: D225 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947521 Sample Accession: GSM2679758 ID: 302679758 14665. RAL_D225 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 0, drug: Raltegravir, donor: D225 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947520 Sample Accession: GSM2679757 ID: 302679757 14666. HIV_48h_D225 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 48, drug: none, donor: D225 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947519 Sample Accession: GSM2679756 ID: 302679756 14667. HIV_32h_D225 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 32, drug: none, donor: D225 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947518 Sample Accession: GSM2679755 ID: 302679755 14668. HIV_16h_D225 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 16, drug: none, donor: D225 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947517 Sample Accession: GSM2679754 ID: 302679754 14669. mock_D225 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 0, drug: none, donor: D225 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679753/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947516 Sample Accession: GSM2679753 ID: 302679753 14670. HIV_RAL_48h_D224 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 48, drug: Raltegravir, donor: D224 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679752/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947515 Sample Accession: GSM2679752 ID: 302679752 14671. HIV_RAL_32h_D224 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 32, drug: Raltegravir, donor: D224 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947514 Sample Accession: GSM2679751 ID: 302679751 14672. HIV_RAL_16h_D224 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 16, drug: Raltegravir, donor: D224 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679750/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947513 Sample Accession: GSM2679750 ID: 302679750 14673. RAL_D224 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 0, drug: Raltegravir, donor: D224 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679749/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947512 Sample Accession: GSM2679749 ID: 302679749 14674. HIV_48h_D224 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 48, drug: none, donor: D224 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679748/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947511 Sample Accession: GSM2679748 ID: 302679748 14675. HIV_32h_D224 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 32, drug: none, donor: D224 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947510 Sample Accession: GSM2679747 ID: 302679747 14676. HIV_16h_D224 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 16, drug: none, donor: D224 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947509 Sample Accession: GSM2679746 ID: 302679746 14677. mock_D224 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 0, drug: none, donor: D224 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947508 Sample Accession: GSM2679745 ID: 302679745 14678. HIV_RAL_48h_D223 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 48, drug: Raltegravir, donor: D223 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947507 Sample Accession: GSM2679744 ID: 302679744 14679. HIV_RAL_32h_D223 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 32, drug: Raltegravir, donor: D223 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947506 Sample Accession: GSM2679743 ID: 302679743 14680. HIV_RAL_16h_D223 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 16, drug: Raltegravir, donor: D223 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947505 Sample Accession: GSM2679742 ID: 302679742 14681. RAL_D223 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 0, drug: Raltegravir, donor: D223 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947504 Sample Accession: GSM2679741 ID: 302679741 14682. HIV_48h_D223 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 48, drug: none, donor: D223 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947503 Sample Accession: GSM2679740 ID: 302679740 14683. HIV_32h_D223 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 32, drug: none, donor: D223 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947502 Sample Accession: GSM2679739 ID: 302679739 14684. HIV_16h_D223 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 16, drug: none, donor: D223 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947501 Sample Accession: GSM2679738 ID: 302679738 14685. mock_D223 Organism: Homo sapiens Source name: monocyte derived dendritic cells infected with HIV in the presence of Vpx, time (hours): 0, drug: none, donor: D223 Platform: GPL18573 Series: GSE100376 GSE100377 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947500 Sample Accession: GSM2679737 ID: 302679737 14686. 2h salt stress Rep 2 Organism: Homo sapiens Source name: HFF_2h_80 mM KCl_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025790 Sample Accession: GSM2714171 ID: 302714171 14687. 2h salt stress Rep 1 Organism: Homo sapiens Source name: HFF_2h_80 mM KCl_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025789 Sample Accession: GSM2714170 ID: 302714170 14688. 1h salt stress Rep 2 Organism: Homo sapiens Source name: HFF_1h_80 mM KCl_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025788 Sample Accession: GSM2714169 ID: 302714169 14689. 1h salt stress Rep 1 Organism: Homo sapiens Source name: HFF_1h_80 mM KCl_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025787 Sample Accession: GSM2714168 ID: 302714168 14690. 2h heat stress Rep 2 Organism: Homo sapiens Source name: HFF_2h_44ºC_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025786 Sample Accession: GSM2714167 ID: 302714167 14691. 2h heat stress Rep 1 Organism: Homo sapiens Source name: HFF_2h_44ºC_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025785 Sample Accession: GSM2714166 ID: 302714166 14692. 1h heat stress Rep 2 Organism: Homo sapiens Source name: HFF_1h_44ºC_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025784 Sample Accession: GSM2714165 ID: 302714165 14693. 1h heat stress Rep 1 Organism: Homo sapiens Source name: HFF_1h_44ºC_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025783 Sample Accession: GSM2714164 ID: 302714164 14694. Mock Rep 4 Organism: Homo sapiens Source name: HFF_mock_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025782 Sample Accession: GSM2714163 ID: 302714163 14695. Mock Rep 3 Organism: Homo sapiens Source name: HFF_mock_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025781 Sample Accession: GSM2714162 ID: 302714162 14696. Mock Rep 2 Organism: Homo sapiens Source name: HFF_mock_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025780 Sample Accession: GSM2714161 ID: 302714161 14697. Mock Rep 1 Organism: Homo sapiens Source name: HFF_mock_ATAC-seq Platform: GPL18573 Series: GSE101731 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025779 Sample Accession: GSM2714160 ID: 302714160 14698. ATAC-seq mock Rep 2 Organism: Homo sapiens Source name: HFF, mock Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965240 Sample Accession: GSM2688944 ID: 302688944 14699. ATAC-seq mock Rep 1 Organism: Homo sapiens Source name: HFF, mock Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965239 Sample Accession: GSM2688943 ID: 302688943 14700. ATAC-seq 8hpi Rep 2 Organism: Homo sapiens Source name: HFF, 8hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965238 Sample Accession: GSM2688942 ID: 302688942 14701. ATAC-seq 8hpi Rep 1 Organism: Homo sapiens Source name: HFF, 8hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965237 Sample Accession: GSM2688941 ID: 302688941 14702. ATAC-seq 6hpi Rep 2 Organism: Homo sapiens Source name: HFF, 6hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965236 Sample Accession: GSM2688940 ID: 302688940 14703. ATAC-seq 6hpi Rep 1 Organism: Homo sapiens Source name: HFF, 6hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965235 Sample Accession: GSM2688939 ID: 302688939 14704. ATAC-seq 4hpi Rep 2 Organism: Homo sapiens Source name: HFF, 4hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965234 Sample Accession: GSM2688938 ID: 302688938 14705. ATAC-seq 4hpi Rep 1 Organism: Homo sapiens Source name: HFF, 4hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965233 Sample Accession: GSM2688937 ID: 302688937 14706. ATAC-seq 2hpi Rep 2 Organism: Homo sapiens Source name: HFF, 2hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965232 Sample Accession: GSM2688936 ID: 302688936 14707. ATAC-seq 2hpi Rep 1 Organism: Homo sapiens Source name: HFF, 2hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965231 Sample Accession: GSM2688935 ID: 302688935 14708. ATAC-seq 1hpi Rep 2 Organism: Homo sapiens Source name: HFF, 1hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965230 Sample Accession: GSM2688934 ID: 302688934 14709. ATAC-seq 1hpi Rep 1 Organism: Homo sapiens Source name: HFF, 1hpi Platform: GPL18573 Series: GSE100611 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2688nnn/GSM2688933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2965229 Sample Accession: GSM2688933 ID: 302688933 14710. ATACSEQ_DOX_REP2 Organism: Homo sapiens Source name: ATAC-seq was performed in RMG-1 clone in ARID1A-KD condition (doxyclicline inducible KD [72h]) Platform: GPL18573 Series: GSE104545 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2803nnn/GSM2803057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3241384 Sample Accession: GSM2803057 ID: 302803057 14711. ATACSEQ_DOX_REP1 Organism: Homo sapiens Source name: ATAC-seq was performed in RMG-1 clone in WT condition Platform: GPL18573 Series: GSE104545 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2803nnn/GSM2803056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3241383 Sample Accession: GSM2803056 ID: 302803056 14712. ATACSEQ_CTRL_REP2 Organism: Homo sapiens Source name: ATAC-seq was performed in RMG-1 clone in ARID1A-KD condition (doxyclicline inducible KD [72h]) Platform: GPL18573 Series: GSE104545 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2803nnn/GSM2803055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3241382 Sample Accession: GSM2803055 ID: 302803055 14713. ATACSEQ_CTRL_REP1 Organism: Homo sapiens Source name: ATAC-seq was performed in RMG-1 clone in WT condition Platform: GPL18573 Series: GSE104545 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2803nnn/GSM2803054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3241381 Sample Accession: GSM2803054 ID: 302803054 14714. Primary ABC, WT, replicate 1 (ATAC-Seq) Organism: Mus musculus Source name: Splenocytes Platform: GPL17021 Series: GSE99480 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM3027nnn/GSM3027060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3751247 Sample Accession: GSM3027060 ID: 303027060 14715. Primary ABC, DKO, replicate 2 (ATAC-Seq) Organism: Mus musculus Source name: Splenocytes Platform: GPL17021 Series: GSE99480 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2644nnn/GSM2644656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871304 Sample Accession: GSM2644656 ID: 302644656 14716. Primary ABC, DKO, replicate 1 (ATAC-Seq) Organism: Mus musculus Source name: Splenocytes Platform: GPL17021 Series: GSE99480 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2644nnn/GSM2644655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871303 Sample Accession: GSM2644655 ID: 302644655 14717. Primary Follicular B cells, DKO, replicate 2 (ATAC-Seq) Organism: Mus musculus Source name: Splenocytes Platform: GPL17021 Series: GSE99480 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2644nnn/GSM2644654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871302 Sample Accession: GSM2644654 ID: 302644654 14718. Primary Follicular B cells, DKO, replicate 1 (ATAC-Seq) Organism: Mus musculus Source name: Splenocytes Platform: GPL17021 Series: GSE99480 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2644nnn/GSM2644653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871301 Sample Accession: GSM2644653 ID: 302644653 14719. AB3_KDM2B.4395_ATAC-Seq Organism: Homo sapiens Source name: Human Synovial sarcoma cells (HS-SY-II) Platform: GPL11154 Series: GSE108927 GSE108929 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2916nnn/GSM2916117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3542507 Sample Accession: GSM2916117 ID: 302916117 14720. AB2_SSX.1274_ATAC-Seq Organism: Homo sapiens Source name: Human Synovial sarcoma cells (HS-SY-II) Platform: GPL11154 Series: GSE108927 GSE108929 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2916nnn/GSM2916116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3542506 Sample Accession: GSM2916116 ID: 302916116 14721. AB1_Ren. 713_ATAC-Seq Organism: Homo sapiens Source name: Human Synovial sarcoma cells (HS-SY-II) Platform: GPL11154 Series: GSE108927 GSE108929 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2916nnn/GSM2916115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3542505 Sample Accession: GSM2916115 ID: 302916115 14722. ATAC_Decidualized sample 3 Organism: Homo sapiens Source name: Endometrial stromal cells Platform: GPL16791 Series: GSE104720 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3260342 Sample Accession: GSM2806611 ID: 302806611 14723. ATAC_Decidualized sample 2 Organism: Homo sapiens Source name: Endometrial stromal cells Platform: GPL16791 Series: GSE104720 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3260341 Sample Accession: GSM2806610 ID: 302806610 14724. ATAC_Undecidualized sample 2 Organism: Homo sapiens Source name: Endometrial stromal cells Platform: GPL16791 Series: GSE104720 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3260340 Sample Accession: GSM2806609 ID: 302806609 14725. ATAC_Decidualized sample 1 Organism: Homo sapiens Source name: Endometrial stromal cells Platform: GPL16791 Series: GSE104720 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3260339 Sample Accession: GSM2806608 ID: 302806608 14726. ATAC_Undecidualized sample 1 Organism: Homo sapiens Source name: Endometrial stromal cells Platform: GPL16791 Series: GSE104720 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3260338 Sample Accession: GSM2806607 ID: 302806607 14727. ATAC-seq from 50k dox- 24h induced SA-tTA-MyoD embryonic stem cells Organism: Mus musculus Source name: SA-tTA-MyoD Embryonic Stem Cells Platform: GPL17021 Series: GSE97714 GSE97715 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734287 Sample Accession: GSM2576076 ID: 302576076 14728. ATAC-seq from 50k dox+ ctrl uninduced SA-tTA-MyoD Embryonic Stem Cells Organism: Mus musculus Source name: SA-tTA-MyoD Embryonic Stem Cells Platform: GPL17021 Series: GSE97714 GSE97715 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734286 Sample Accession: GSM2576075 ID: 302576075 14729. ATAC-seq from 50k dox- 24h induced SA-tTA-Ascl2 embryonic stem cells Organism: Mus musculus Source name: SA-tTA-Ascl2 Embryonic Stem Cells Platform: GPL17021 Series: GSE97714 GSE97715 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734285 Sample Accession: GSM2576074 ID: 302576074 14730. ATAC-seq from 50k dox+ ctrl uninduced SA-tTA-Ascl2 Embryonic Stem Cells Organism: Mus musculus Source name: SA-tTA-Ascl2 Embryonic Stem Cells Platform: GPL17021 Series: GSE97714 GSE97715 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576073/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734284 Sample Accession: GSM2576073 ID: 302576073 14731. ATAC-seq from 50k dox- 24h induced SA-tTA-Ascl1 embryonic stem cells Organism: Mus musculus Source name: SA-tTA-Ascl1 Embryonic Stem Cells Platform: GPL17021 Series: GSE97714 GSE97715 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576072/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734283 Sample Accession: GSM2576072 ID: 302576072 14732. ATAC-seq from 50k dox+ ctrl uninduced SA-tTA-Ascl1 Embryonic Stem Cells Organism: Mus musculus Source name: SA-tTA-Ascl1 Embryonic Stem Cells Platform: GPL17021 Series: GSE97714 GSE97715 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576071/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734282 Sample Accession: GSM2576071 ID: 302576071 14733. T cells with DEM Rep2 (ATAC-Seq) Organism: Homo sapiens Source name: T cells with DEM Platform: GPL11154 Series: GSE108024 GSE108030 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467906 Sample Accession: GSM2887537 ID: 302887537 14734. Control T cells Rep 2 (ATAC-Seq) Organism: Homo sapiens Source name: Control T cells Platform: GPL11154 Series: GSE108024 GSE108030 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467905 Sample Accession: GSM2887536 ID: 302887536 14735. T cells with DEM Rep1 (ATAC-Seq) Organism: Homo sapiens Source name: T cells with DEM Platform: GPL11154 Series: GSE108024 GSE108030 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467904 Sample Accession: GSM2887535 ID: 302887535 14736. Control T cells Rep 1 (ATAC-Seq) Organism: Homo sapiens Source name: Control T cells Platform: GPL11154 Series: GSE108024 GSE108030 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3467903 Sample Accession: GSM2887534 ID: 302887534 14737. NIH3T3 Tcf-1 RV ATAC-seq Rep 4 Organism: Mus musculus Source name: NIH3T3 cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634341/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840524 Sample Accession: GSM2634341 ID: 302634341 14738. NIH3T3 Tcf-1 RV ATAC-seq Rep 3 Organism: Mus musculus Source name: NIH3T3 cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840523 Sample Accession: GSM2634340 ID: 302634340 14739. NIH3T3 Tcf-1 RV ATAC-seq Rep 2 Organism: Mus musculus Source name: NIH3T3 cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840522 Sample Accession: GSM2634339 ID: 302634339 14740. NIH3T3 Tcf-1 RV ATAC-seq Rep 1 Organism: Mus musculus Source name: NIH3T3 cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840521 Sample Accession: GSM2634338 ID: 302634338 14741. NIH3T3 Empty RV ATAC-seq Rep 4 Organism: Mus musculus Source name: NIH3T3 cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840520 Sample Accession: GSM2634337 ID: 302634337 14742. NIH3T3 Empty RV ATAC-seq Rep 3 Organism: Mus musculus Source name: NIH3T3 cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840519 Sample Accession: GSM2634336 ID: 302634336 14743. NIH3T3 Empty RV ATAC-seq Rep 2 Organism: Mus musculus Source name: NIH3T3 cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840518 Sample Accession: GSM2634335 ID: 302634335 14744. NIH3T3 Empty RV ATAC-seq Rep 1 Organism: Mus musculus Source name: NIH3T3 cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634334/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840517 Sample Accession: GSM2634334 ID: 302634334 14745. Tcf-1 KO DP ATAC-seq Rep 2 Organism: Mus musculus Source name: CD4+CD8+ T cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634333/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840516 Sample Accession: GSM2634333 ID: 302634333 14746. Tcf-1 KO DP ATAC-seq Rep 1 Organism: Mus musculus Source name: CD4+CD8+ T cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840515 Sample Accession: GSM2634332 ID: 302634332 14747. DP ATAC-seq Rep 2 Organism: Mus musculus Source name: CD4+CD8+ T cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634331/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840514 Sample Accession: GSM2634331 ID: 302634331 14748. DP ATAC-seq Rep 1 Organism: Mus musculus Source name: CD4+CD8+ T cells Platform: GPL21626 Series: GSE99159 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2634nnn/GSM2634330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2840513 Sample Accession: GSM2634330 ID: 302634330 14749. ATAC_6hrs_rep2 [ATAC-Seq-Tet-On] Organism: Mus musculus Source name: ATAC_6hrs Platform: GPL17021 Series: GSE107235 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413793 Sample Accession: GSM2863139 ID: 302863139 14750. ATAC_0hrs_rep2 [ATAC-Seq-Tet-On] Organism: Mus musculus Source name: ATAC_0hrs Platform: GPL17021 Series: GSE107235 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413792 Sample Accession: GSM2863138 ID: 302863138 14751. ATAC_6hrs_rep1 [ATAC-Seq-Tet-On] Organism: Mus musculus Source name: ATAC_6hrs Platform: GPL17021 Series: GSE107235 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413791 Sample Accession: GSM2863137 ID: 302863137 14752. ATAC_0hrs_rep1 [ATAC-Seq-Tet-On] Organism: Mus musculus Source name: ATAC_0hrs Platform: GPL17021 Series: GSE107235 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413790 Sample Accession: GSM2863136 ID: 302863136 14753. ATAC_proB_rep2 [ATAC-Seq-Cre] Organism: Mus musculus Source name: ATAC_proB Platform: GPL17021 Series: GSE107234 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413779 Sample Accession: GSM2863135 ID: 302863135 14754. ATAC_72hrs_rep2 [ATAC-Seq-Cre] Organism: Mus musculus Source name: ATAC_72hrs Platform: GPL17021 Series: GSE107234 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413778 Sample Accession: GSM2863134 ID: 302863134 14755. ATAC_24hrs_rep2 [ATAC-Seq-Cre] Organism: Mus musculus Source name: ATAC_24hrs Platform: GPL17021 Series: GSE107234 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413777 Sample Accession: GSM2863133 ID: 302863133 14756. ATAC_0hrs_rep2 [ATAC-Seq-Cre] Organism: Mus musculus Source name: ATAC_0hrs Platform: GPL17021 Series: GSE107234 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413776 Sample Accession: GSM2863132 ID: 302863132 14757. ATAC_proB_rep1 [ATAC-Seq-Cre] Organism: Mus musculus Source name: ATAC_proB Platform: GPL17021 Series: GSE107234 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413775 Sample Accession: GSM2863131 ID: 302863131 14758. ATAC_72hrs_rep1 [ATAC-Seq-Cre] Organism: Mus musculus Source name: ATAC_72hrs Platform: GPL17021 Series: GSE107234 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413774 Sample Accession: GSM2863130 ID: 302863130 14759. ATAC_24hrs_rep1 [ATAC-Seq-Cre] Organism: Mus musculus Source name: ATAC_24hrs Platform: GPL17021 Series: GSE107234 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413773 Sample Accession: GSM2863129 ID: 302863129 14760. ATAC_0hrs_rep1 [ATAC-Seq-Cre] Organism: Mus musculus Source name: ATAC_0hrs Platform: GPL17021 Series: GSE107234 GSE107242 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3413772 Sample Accession: GSM2863128 ID: 302863128 14761. ATAC-adultmSC Organism: Mus musculus Source name: mouse Schwann cells Platform: GPL13112 Series: GSE99040 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2787nnn/GSM2787787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3198172 Sample Accession: GSM2787787 ID: 302787787 14762. MM1S_ATAC Organism: Homo sapiens Source name: Multiple Myeloma Platform: GPL18573 Series: GSE80152 GSE80154 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2113nnn/GSM2113548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1690252 Sample Accession: GSM2113548 ID: 302113548 14763. SHEP21_ATAC Organism: Homo sapiens Source name: Neuroblastoma Platform: GPL18573 Series: GSE80152 GSE80154 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2113nnn/GSM2113547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1690251 Sample Accession: GSM2113547 ID: 302113547 14764. NGP_ATAC Organism: Homo sapiens Source name: Neuroblastoma Platform: GPL18573 Series: GSE80152 GSE80154 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2113nnn/GSM2113546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1690250 Sample Accession: GSM2113546 ID: 302113546 14765. KELLY_ATAC Organism: Homo sapiens Source name: Neuroblastoma Platform: GPL18573 Series: GSE80152 GSE80154 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2113nnn/GSM2113545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1690249 Sample Accession: GSM2113545 ID: 302113545 14766. BE2C_ATAC Organism: Homo sapiens Source name: Neuroblastoma Platform: GPL18573 Series: GSE80152 GSE80154 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2113nnn/GSM2113544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1690248 Sample Accession: GSM2113544 ID: 302113544 14767. 1Week_rep3_3604 Organism: Mus musculus Source name: Hepatocytes Platform: GPL21103 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590937 Sample Accession: GSM2943966 ID: 302943966 14768. 1Week_rep3_3603 Organism: Mus musculus Source name: Hepatocytes Platform: GPL21103 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590936 Sample Accession: GSM2943965 ID: 302943965 14769. 1Week_rep2_2302 Organism: Mus musculus Source name: Hepatocytes Platform: GPL21103 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590935 Sample Accession: GSM2943964 ID: 302943964 14770. 1Week_rep1_2301 Organism: Mus musculus Source name: Hepatocytes Platform: GPL21103 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590934 Sample Accession: GSM2943963 ID: 302943963 14771. Quiescent_rep2_SUN1GFP Organism: Mus musculus Source name: Hepatocytes Platform: GPL21103 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590933 Sample Accession: GSM2943962 ID: 302943962 14772. Quiescent_rep1_SUN1GFP Organism: Mus musculus Source name: Hepatocytes Platform: GPL21103 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590932 Sample Accession: GSM2943961 ID: 302943961 14773. 4WeekSevere_rep3_10311 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590931 Sample Accession: GSM2943960 ID: 302943960 14774. 4WeekSevere_rep2_7578 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590930 Sample Accession: GSM2943959 ID: 302943959 14775. 4WeekSevere_rep1_7414 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590929 Sample Accession: GSM2943958 ID: 302943958 14776. 4Week_rep6_10290 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590928 Sample Accession: GSM2943957 ID: 302943957 14777. 4Week_rep5_10127 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590927 Sample Accession: GSM2943956 ID: 302943956 14778. 4Week_rep4_10123 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590926 Sample Accession: GSM2943955 ID: 302943955 14779. 4Week_rep3_7579 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590925 Sample Accession: GSM2943954 ID: 302943954 14780. 4Week_rep2_7577 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590924 Sample Accession: GSM2943953 ID: 302943953 14781. 4Week_rep1_7413 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590923 Sample Accession: GSM2943952 ID: 302943952 14782. 1Week_rep3_7573 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590922 Sample Accession: GSM2943951 ID: 302943951 14783. 1Week_rep2_7569 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590921 Sample Accession: GSM2943950 ID: 302943950 14784. 1Week_rep1_7568 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590920 Sample Accession: GSM2943949 ID: 302943949 14785. Quiescent_rep4_GL5_2 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590919 Sample Accession: GSM2943948 ID: 302943948 14786. Quiescent_rep4_GL5_1 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590918 Sample Accession: GSM2943947 ID: 302943947 14787. Quiescent_rep3_GL3 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590917 Sample Accession: GSM2943946 ID: 302943946 14788. Quiescent_rep2_GL2_3 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590916 Sample Accession: GSM2943945 ID: 302943945 14789. Quiescent_rep2_GL2_2 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590915 Sample Accession: GSM2943944 ID: 302943944 14790. Quiescent_rep2_GL2_1 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590914 Sample Accession: GSM2943943 ID: 302943943 14791. Quiescent_rep1_GL1_2 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590912 Sample Accession: GSM2943942 ID: 302943942 14792. Quiescent_rep1_GL1_1 Organism: Mus musculus Source name: Hepatocytes Platform: GPL17021 Series: GSE109466 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3590911 Sample Accession: GSM2943941 ID: 302943941 14793. ATAC-seq from K562_E669Q cells CPT4H Organism: Homo sapiens Source name: Lymphoblast Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2856nnn/GSM2856217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3389662 Sample Accession: GSM2856217 ID: 302856217 14794. ATAC-seq from K562_E669Q cells CPT0H Organism: Homo sapiens Source name: Lymphoblast Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2856nnn/GSM2856216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3389661 Sample Accession: GSM2856216 ID: 302856216 14795. ATAC-seq from K562_WT cells CPT4H Organism: Homo sapiens Source name: Lymphoblast Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2856nnn/GSM2856215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3389660 Sample Accession: GSM2856215 ID: 302856215 14796. ATAC-seq from K562_WT cells CPT0H Organism: Homo sapiens Source name: Lymphoblast Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2856nnn/GSM2856214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3389659 Sample Accession: GSM2856214 ID: 302856214 14797. ATAC-seq from K562_Vector cells CPT4H Organism: Homo sapiens Source name: Lymphoblast Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2856nnn/GSM2856213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3389658 Sample Accession: GSM2856213 ID: 302856213 14798. ATAC-seq from K562_Vector cells CPT0H Organism: Homo sapiens Source name: Lymphoblast Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2856nnn/GSM2856212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3389657 Sample Accession: GSM2856212 ID: 302856212 14799. Control Reads (random shear) from CCRF-CEM SLFN11-KO (ATAC-Seq) Organism: Homo sapiens Source name: Leukemic lymphoblasts Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009074 Sample Accession: GSM2705244 ID: 302705244 14800. Control Reads (random shear) from CCRF-CEM parental cells (ATAC-Seq) Organism: Homo sapiens Source name: Leukemic lymphoblasts Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009073 Sample Accession: GSM2705243 ID: 302705243 14801. ATAC-seq from CCRF-CEM SLFN11-KO cells CPT4H Organism: Homo sapiens Source name: Leukemic lymphoblasts Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2705nnn/GSM2705236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009066 Sample Accession: GSM2705236 ID: 302705236 14802. ATAC-seq from CCRF-CEM SLFN11-KO cells CPT2H Organism: Homo sapiens Source name: Leukemic lymphoblasts Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2705nnn/GSM2705235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009065 Sample Accession: GSM2705235 ID: 302705235 14803. ATAC-seq from CCRF-CEM SLFN11-KO cells CPT0H Organism: Homo sapiens Source name: Leukemic lymphoblasts Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2705nnn/GSM2705234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009064 Sample Accession: GSM2705234 ID: 302705234 14804. ATAC-seq from CCRF-CEM parental cells CPT4H Organism: Homo sapiens Source name: Leukemic lymphoblasts Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2705nnn/GSM2705233/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009063 Sample Accession: GSM2705233 ID: 302705233 14805. ATAC-seq from CCRF-CEM parental cells CPT2H Organism: Homo sapiens Source name: Leukemic lymphoblasts Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2705nnn/GSM2705232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009062 Sample Accession: GSM2705232 ID: 302705232 14806. ATAC-seq from CCRF-CEM parental cells CPT0H Organism: Homo sapiens Source name: Leukemic lymphoblasts Platform: GPL10999 Series: GSE101512 GSE101516 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2705nnn/GSM2705231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3009061 Sample Accession: GSM2705231 ID: 302705231 14807. Primary T cell 960 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455222 Sample Accession: GSM2880987 ID: 302880987 14808. Primary T cell 959 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455221 Sample Accession: GSM2880986 ID: 302880986 14809. Primary T cell 958 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455220 Sample Accession: GSM2880985 ID: 302880985 14810. Primary T cell 957 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455219 Sample Accession: GSM2880984 ID: 302880984 14811. Primary T cell 956 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455218 Sample Accession: GSM2880983 ID: 302880983 14812. Primary T cell 955 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455217 Sample Accession: GSM2880982 ID: 302880982 14813. Primary T cell 954 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455216 Sample Accession: GSM2880981 ID: 302880981 14814. Primary T cell 953 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455215 Sample Accession: GSM2880980 ID: 302880980 14815. Primary T cell 952 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455214 Sample Accession: GSM2880979 ID: 302880979 14816. Primary T cell 951 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455213 Sample Accession: GSM2880978 ID: 302880978 14817. Primary T cell 950 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455212 Sample Accession: GSM2880977 ID: 302880977 14818. Primary T cell 949 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455211 Sample Accession: GSM2880976 ID: 302880976 14819. Primary T cell 948 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455210 Sample Accession: GSM2880975 ID: 302880975 14820. Primary T cell 947 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880974/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455209 Sample Accession: GSM2880974 ID: 302880974 14821. Primary T cell 946 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880973/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455208 Sample Accession: GSM2880973 ID: 302880973 14822. Primary T cell 945 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455207 Sample Accession: GSM2880972 ID: 302880972 14823. Primary T cell 944 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880971/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455206 Sample Accession: GSM2880971 ID: 302880971 14824. Primary T cell 943 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455205 Sample Accession: GSM2880970 ID: 302880970 14825. Primary T cell 942 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880969/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455204 Sample Accession: GSM2880969 ID: 302880969 14826. Primary T cell 941 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455203 Sample Accession: GSM2880968 ID: 302880968 14827. Primary T cell 940 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455202 Sample Accession: GSM2880967 ID: 302880967 14828. Primary T cell 939 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455201 Sample Accession: GSM2880966 ID: 302880966 14829. Primary T cell 938 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455200 Sample Accession: GSM2880965 ID: 302880965 14830. Primary T cell 937 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455199 Sample Accession: GSM2880964 ID: 302880964 14831. Primary T cell 936 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455198 Sample Accession: GSM2880963 ID: 302880963 14832. Primary T cell 935 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455197 Sample Accession: GSM2880962 ID: 302880962 14833. Primary T cell 934 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455196 Sample Accession: GSM2880961 ID: 302880961 14834. Primary T cell 933 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455195 Sample Accession: GSM2880960 ID: 302880960 14835. Primary T cell 932 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455194 Sample Accession: GSM2880959 ID: 302880959 14836. Primary T cell 931 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455193 Sample Accession: GSM2880958 ID: 302880958 14837. Primary T cell 930 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455192 Sample Accession: GSM2880957 ID: 302880957 14838. Primary T cell 929 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455191 Sample Accession: GSM2880956 ID: 302880956 14839. Primary T cell 928 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454998 Sample Accession: GSM2880955 ID: 302880955 14840. Primary T cell 927 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454997 Sample Accession: GSM2880954 ID: 302880954 14841. Primary T cell 926 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454996 Sample Accession: GSM2880953 ID: 302880953 14842. Primary T cell 925 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454995 Sample Accession: GSM2880952 ID: 302880952 14843. Primary T cell 924 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454994 Sample Accession: GSM2880951 ID: 302880951 14844. Primary T cell 923 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454993 Sample Accession: GSM2880950 ID: 302880950 14845. Primary T cell 922 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454992 Sample Accession: GSM2880949 ID: 302880949 14846. Primary T cell 921 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880948/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454991 Sample Accession: GSM2880948 ID: 302880948 14847. Primary T cell 920 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454990 Sample Accession: GSM2880947 ID: 302880947 14848. Primary T cell 919 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454989 Sample Accession: GSM2880946 ID: 302880946 14849. Primary T cell 918 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454988 Sample Accession: GSM2880945 ID: 302880945 14850. Primary T cell 917 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454987 Sample Accession: GSM2880944 ID: 302880944 14851. Primary T cell 916 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454986 Sample Accession: GSM2880943 ID: 302880943 14852. Primary T cell 915 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454985 Sample Accession: GSM2880942 ID: 302880942 14853. Primary T cell 914 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454984 Sample Accession: GSM2880941 ID: 302880941 14854. Primary T cell 913 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454983 Sample Accession: GSM2880940 ID: 302880940 14855. Primary T cell 912 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454982 Sample Accession: GSM2880939 ID: 302880939 14856. Primary T cell 911 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454981 Sample Accession: GSM2880938 ID: 302880938 14857. Primary T cell 910 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454980 Sample Accession: GSM2880937 ID: 302880937 14858. Primary T cell 909 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454979 Sample Accession: GSM2880936 ID: 302880936 14859. Primary T cell 908 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454978 Sample Accession: GSM2880935 ID: 302880935 14860. Primary T cell 907 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454977 Sample Accession: GSM2880934 ID: 302880934 14861. Primary T cell 906 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454976 Sample Accession: GSM2880933 ID: 302880933 14862. Primary T cell 905 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454975 Sample Accession: GSM2880932 ID: 302880932 14863. Primary T cell 904 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454974 Sample Accession: GSM2880931 ID: 302880931 14864. Primary T cell 903 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454973 Sample Accession: GSM2880930 ID: 302880930 14865. Primary T cell 902 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454972 Sample Accession: GSM2880929 ID: 302880929 14866. Primary T cell 901 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454971 Sample Accession: GSM2880928 ID: 302880928 14867. Primary T cell 900 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454970 Sample Accession: GSM2880927 ID: 302880927 14868. Primary T cell 899 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454969 Sample Accession: GSM2880926 ID: 302880926 14869. Primary T cell 898 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454968 Sample Accession: GSM2880925 ID: 302880925 14870. Primary T cell 897 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454967 Sample Accession: GSM2880924 ID: 302880924 14871. Primary T cell 896 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454902 Sample Accession: GSM2880923 ID: 302880923 14872. Primary T cell 895 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454901 Sample Accession: GSM2880922 ID: 302880922 14873. Primary T cell 894 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454900 Sample Accession: GSM2880921 ID: 302880921 14874. Primary T cell 893 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454899 Sample Accession: GSM2880920 ID: 302880920 14875. Primary T cell 892 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880919/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454898 Sample Accession: GSM2880919 ID: 302880919 14876. Primary T cell 891 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454897 Sample Accession: GSM2880918 ID: 302880918 14877. Primary T cell 890 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454896 Sample Accession: GSM2880917 ID: 302880917 14878. Primary T cell 889 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454895 Sample Accession: GSM2880916 ID: 302880916 14879. Primary T cell 888 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454894 Sample Accession: GSM2880915 ID: 302880915 14880. Primary T cell 887 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454893 Sample Accession: GSM2880914 ID: 302880914 14881. Primary T cell 886 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454892 Sample Accession: GSM2880913 ID: 302880913 14882. Primary T cell 885 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454891 Sample Accession: GSM2880912 ID: 302880912 14883. Primary T cell 884 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454890 Sample Accession: GSM2880911 ID: 302880911 14884. Primary T cell 883 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880910/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454889 Sample Accession: GSM2880910 ID: 302880910 14885. Primary T cell 882 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880909/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454888 Sample Accession: GSM2880909 ID: 302880909 14886. Primary T cell 881 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880908/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454887 Sample Accession: GSM2880908 ID: 302880908 14887. Primary T cell 880 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880907/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454886 Sample Accession: GSM2880907 ID: 302880907 14888. Primary T cell 879 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880906/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454885 Sample Accession: GSM2880906 ID: 302880906 14889. Primary T cell 878 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454884 Sample Accession: GSM2880905 ID: 302880905 14890. Primary T cell 877 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454883 Sample Accession: GSM2880904 ID: 302880904 14891. Primary T cell 876 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454882 Sample Accession: GSM2880903 ID: 302880903 14892. Primary T cell 875 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454881 Sample Accession: GSM2880902 ID: 302880902 14893. Primary T cell 874 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454880 Sample Accession: GSM2880901 ID: 302880901 14894. Primary T cell 873 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454879 Sample Accession: GSM2880900 ID: 302880900 14895. Primary T cell 872 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454878 Sample Accession: GSM2880899 ID: 302880899 14896. Primary T cell 871 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454877 Sample Accession: GSM2880898 ID: 302880898 14897. Primary T cell 870 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454876 Sample Accession: GSM2880897 ID: 302880897 14898. Primary T cell 869 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454875 Sample Accession: GSM2880896 ID: 302880896 14899. Primary T cell 868 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454874 Sample Accession: GSM2880895 ID: 302880895 14900. Primary T cell 867 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454873 Sample Accession: GSM2880894 ID: 302880894 14901. Primary T cell 866 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454872 Sample Accession: GSM2880893 ID: 302880893 14902. Primary T cell 865 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454871 Sample Accession: GSM2880892 ID: 302880892 14903. Primary T cell 864 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455286 Sample Accession: GSM2880891 ID: 302880891 14904. Primary T cell 863 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455285 Sample Accession: GSM2880890 ID: 302880890 14905. Primary T cell 862 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455284 Sample Accession: GSM2880889 ID: 302880889 14906. Primary T cell 861 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880888/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455283 Sample Accession: GSM2880888 ID: 302880888 14907. Primary T cell 860 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455282 Sample Accession: GSM2880887 ID: 302880887 14908. Primary T cell 859 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880886/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455281 Sample Accession: GSM2880886 ID: 302880886 14909. Primary T cell 858 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455280 Sample Accession: GSM2880885 ID: 302880885 14910. Primary T cell 857 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455279 Sample Accession: GSM2880884 ID: 302880884 14911. Primary T cell 856 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455278 Sample Accession: GSM2880883 ID: 302880883 14912. Primary T cell 855 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455277 Sample Accession: GSM2880882 ID: 302880882 14913. Primary T cell 854 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455276 Sample Accession: GSM2880881 ID: 302880881 14914. Primary T cell 853 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455275 Sample Accession: GSM2880880 ID: 302880880 14915. Primary T cell 852 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455274 Sample Accession: GSM2880879 ID: 302880879 14916. Primary T cell 851 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455273 Sample Accession: GSM2880878 ID: 302880878 14917. Primary T cell 850 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455272 Sample Accession: GSM2880877 ID: 302880877 14918. Primary T cell 849 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455271 Sample Accession: GSM2880876 ID: 302880876 14919. Primary T cell 848 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455270 Sample Accession: GSM2880875 ID: 302880875 14920. Primary T cell 847 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455269 Sample Accession: GSM2880874 ID: 302880874 14921. Primary T cell 846 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455268 Sample Accession: GSM2880873 ID: 302880873 14922. Primary T cell 845 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455267 Sample Accession: GSM2880872 ID: 302880872 14923. Primary T cell 844 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455266 Sample Accession: GSM2880871 ID: 302880871 14924. Primary T cell 843 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455265 Sample Accession: GSM2880870 ID: 302880870 14925. Primary T cell 842 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455264 Sample Accession: GSM2880869 ID: 302880869 14926. Primary T cell 841 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455263 Sample Accession: GSM2880868 ID: 302880868 14927. Primary T cell 840 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455262 Sample Accession: GSM2880867 ID: 302880867 14928. Primary T cell 839 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455261 Sample Accession: GSM2880866 ID: 302880866 14929. Primary T cell 838 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455260 Sample Accession: GSM2880865 ID: 302880865 14930. Primary T cell 837 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455259 Sample Accession: GSM2880864 ID: 302880864 14931. Primary T cell 836 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880863/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455258 Sample Accession: GSM2880863 ID: 302880863 14932. Primary T cell 835 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880862/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455257 Sample Accession: GSM2880862 ID: 302880862 14933. Primary T cell 834 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880861/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455256 Sample Accession: GSM2880861 ID: 302880861 14934. Primary T cell 833 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455255 Sample Accession: GSM2880860 ID: 302880860 14935. Primary T cell 832 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455254 Sample Accession: GSM2880859 ID: 302880859 14936. Primary T cell 831 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455253 Sample Accession: GSM2880858 ID: 302880858 14937. Primary T cell 830 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455252 Sample Accession: GSM2880857 ID: 302880857 14938. Primary T cell 829 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455251 Sample Accession: GSM2880856 ID: 302880856 14939. Primary T cell 828 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455250 Sample Accession: GSM2880855 ID: 302880855 14940. Primary T cell 827 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455249 Sample Accession: GSM2880854 ID: 302880854 14941. Primary T cell 826 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455248 Sample Accession: GSM2880853 ID: 302880853 14942. Primary T cell 825 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455247 Sample Accession: GSM2880852 ID: 302880852 14943. Primary T cell 824 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880851/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455246 Sample Accession: GSM2880851 ID: 302880851 14944. Primary T cell 823 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880850/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455245 Sample Accession: GSM2880850 ID: 302880850 14945. Primary T cell 822 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455244 Sample Accession: GSM2880849 ID: 302880849 14946. Primary T cell 821 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455243 Sample Accession: GSM2880848 ID: 302880848 14947. Primary T cell 820 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455242 Sample Accession: GSM2880847 ID: 302880847 14948. Primary T cell 819 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455241 Sample Accession: GSM2880846 ID: 302880846 14949. Primary T cell 818 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455240 Sample Accession: GSM2880845 ID: 302880845 14950. Primary T cell 817 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455239 Sample Accession: GSM2880844 ID: 302880844 14951. Primary T cell 816 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455238 Sample Accession: GSM2880843 ID: 302880843 14952. Primary T cell 815 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455237 Sample Accession: GSM2880842 ID: 302880842 14953. Primary T cell 814 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455236 Sample Accession: GSM2880841 ID: 302880841 14954. Primary T cell 813 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455235 Sample Accession: GSM2880840 ID: 302880840 14955. Primary T cell 812 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455234 Sample Accession: GSM2880839 ID: 302880839 14956. Primary T cell 811 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455233 Sample Accession: GSM2880838 ID: 302880838 14957. Primary T cell 810 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455232 Sample Accession: GSM2880837 ID: 302880837 14958. Primary T cell 809 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455231 Sample Accession: GSM2880836 ID: 302880836 14959. Primary T cell 808 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880835/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455230 Sample Accession: GSM2880835 ID: 302880835 14960. Primary T cell 807 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455229 Sample Accession: GSM2880834 ID: 302880834 14961. Primary T cell 806 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455228 Sample Accession: GSM2880833 ID: 302880833 14962. Primary T cell 805 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880832/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455227 Sample Accession: GSM2880832 ID: 302880832 14963. Primary T cell 804 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880831/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455226 Sample Accession: GSM2880831 ID: 302880831 14964. Primary T cell 803 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455225 Sample Accession: GSM2880830 ID: 302880830 14965. Primary T cell 802 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455224 Sample Accession: GSM2880829 ID: 302880829 14966. Primary T cell 801 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455223 Sample Accession: GSM2880828 ID: 302880828 14967. Primary T cell 800 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454870 Sample Accession: GSM2880827 ID: 302880827 14968. Primary T cell 799 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880826/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454869 Sample Accession: GSM2880826 ID: 302880826 14969. Primary T cell 798 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454868 Sample Accession: GSM2880825 ID: 302880825 14970. Primary T cell 797 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454867 Sample Accession: GSM2880824 ID: 302880824 14971. Primary T cell 796 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454866 Sample Accession: GSM2880823 ID: 302880823 14972. Primary T cell 795 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454865 Sample Accession: GSM2880822 ID: 302880822 14973. Primary T cell 794 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454864 Sample Accession: GSM2880821 ID: 302880821 14974. Primary T cell 793 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880820/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454863 Sample Accession: GSM2880820 ID: 302880820 14975. Primary T cell 792 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454862 Sample Accession: GSM2880819 ID: 302880819 14976. Primary T cell 791 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880818/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454861 Sample Accession: GSM2880818 ID: 302880818 14977. Primary T cell 790 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454860 Sample Accession: GSM2880817 ID: 302880817 14978. Primary T cell 789 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454859 Sample Accession: GSM2880816 ID: 302880816 14979. Primary T cell 788 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454858 Sample Accession: GSM2880815 ID: 302880815 14980. Primary T cell 787 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880814/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454857 Sample Accession: GSM2880814 ID: 302880814 14981. Primary T cell 786 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454856 Sample Accession: GSM2880813 ID: 302880813 14982. Primary T cell 785 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454855 Sample Accession: GSM2880812 ID: 302880812 14983. Primary T cell 784 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880811/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454854 Sample Accession: GSM2880811 ID: 302880811 14984. Primary T cell 783 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454853 Sample Accession: GSM2880810 ID: 302880810 14985. Primary T cell 782 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880809/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454852 Sample Accession: GSM2880809 ID: 302880809 14986. Primary T cell 781 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454851 Sample Accession: GSM2880808 ID: 302880808 14987. Primary T cell 780 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454850 Sample Accession: GSM2880807 ID: 302880807 14988. Primary T cell 779 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454849 Sample Accession: GSM2880806 ID: 302880806 14989. Primary T cell 778 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454848 Sample Accession: GSM2880805 ID: 302880805 14990. Primary T cell 777 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454847 Sample Accession: GSM2880804 ID: 302880804 14991. Primary T cell 776 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454846 Sample Accession: GSM2880803 ID: 302880803 14992. Primary T cell 775 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454845 Sample Accession: GSM2880802 ID: 302880802 14993. Primary T cell 774 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454844 Sample Accession: GSM2880801 ID: 302880801 14994. Primary T cell 773 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454843 Sample Accession: GSM2880800 ID: 302880800 14995. Primary T cell 772 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454842 Sample Accession: GSM2880799 ID: 302880799 14996. Primary T cell 771 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454841 Sample Accession: GSM2880798 ID: 302880798 14997. Primary T cell 770 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454840 Sample Accession: GSM2880797 ID: 302880797 14998. Primary T cell 769 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454839 Sample Accession: GSM2880796 ID: 302880796 14999. Primary T cell 768 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454838 Sample Accession: GSM2880795 ID: 302880795 15000. Primary T cell 767 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454837 Sample Accession: GSM2880794 ID: 302880794 15001. Primary T cell 766 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454836 Sample Accession: GSM2880793 ID: 302880793 15002. Primary T cell 765 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454835 Sample Accession: GSM2880792 ID: 302880792 15003. Primary T cell 764 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454834 Sample Accession: GSM2880791 ID: 302880791 15004. Primary T cell 763 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454833 Sample Accession: GSM2880790 ID: 302880790 15005. Primary T cell 762 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454832 Sample Accession: GSM2880789 ID: 302880789 15006. Primary T cell 761 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454831 Sample Accession: GSM2880788 ID: 302880788 15007. Primary T cell 760 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454830 Sample Accession: GSM2880787 ID: 302880787 15008. Primary T cell 759 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454829 Sample Accession: GSM2880786 ID: 302880786 15009. Primary T cell 758 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454828 Sample Accession: GSM2880785 ID: 302880785 15010. Primary T cell 757 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454827 Sample Accession: GSM2880784 ID: 302880784 15011. Primary T cell 756 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454826 Sample Accession: GSM2880783 ID: 302880783 15012. Primary T cell 755 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454825 Sample Accession: GSM2880782 ID: 302880782 15013. Primary T cell 754 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454824 Sample Accession: GSM2880781 ID: 302880781 15014. Primary T cell 753 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454823 Sample Accession: GSM2880780 ID: 302880780 15015. Primary T cell 752 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454822 Sample Accession: GSM2880779 ID: 302880779 15016. Primary T cell 751 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454821 Sample Accession: GSM2880778 ID: 302880778 15017. Primary T cell 750 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454820 Sample Accession: GSM2880777 ID: 302880777 15018. Primary T cell 749 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454819 Sample Accession: GSM2880776 ID: 302880776 15019. Primary T cell 748 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454818 Sample Accession: GSM2880775 ID: 302880775 15020. Primary T cell 747 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454817 Sample Accession: GSM2880774 ID: 302880774 15021. Primary T cell 746 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454816 Sample Accession: GSM2880773 ID: 302880773 15022. Primary T cell 745 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454815 Sample Accession: GSM2880772 ID: 302880772 15023. Primary T cell 744 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454814 Sample Accession: GSM2880771 ID: 302880771 15024. Primary T cell 743 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454813 Sample Accession: GSM2880770 ID: 302880770 15025. Primary T cell 742 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454812 Sample Accession: GSM2880769 ID: 302880769 15026. Primary T cell 741 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454811 Sample Accession: GSM2880768 ID: 302880768 15027. Primary T cell 740 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454810 Sample Accession: GSM2880767 ID: 302880767 15028. Primary T cell 739 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454809 Sample Accession: GSM2880766 ID: 302880766 15029. Primary T cell 738 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454808 Sample Accession: GSM2880765 ID: 302880765 15030. Primary T cell 737 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454807 Sample Accession: GSM2880764 ID: 302880764 15031. Primary T cell 736 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455414 Sample Accession: GSM2880763 ID: 302880763 15032. Primary T cell 735 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455413 Sample Accession: GSM2880762 ID: 302880762 15033. Primary T cell 734 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455412 Sample Accession: GSM2880761 ID: 302880761 15034. Primary T cell 733 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455411 Sample Accession: GSM2880760 ID: 302880760 15035. Primary T cell 732 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455410 Sample Accession: GSM2880759 ID: 302880759 15036. Primary T cell 731 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455409 Sample Accession: GSM2880758 ID: 302880758 15037. Primary T cell 730 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455408 Sample Accession: GSM2880757 ID: 302880757 15038. Primary T cell 729 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455407 Sample Accession: GSM2880756 ID: 302880756 15039. Primary T cell 728 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455406 Sample Accession: GSM2880755 ID: 302880755 15040. Primary T cell 727 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455405 Sample Accession: GSM2880754 ID: 302880754 15041. Primary T cell 726 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880753/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455404 Sample Accession: GSM2880753 ID: 302880753 15042. Primary T cell 725 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880752/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455403 Sample Accession: GSM2880752 ID: 302880752 15043. Primary T cell 724 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455402 Sample Accession: GSM2880751 ID: 302880751 15044. Primary T cell 723 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880750/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455401 Sample Accession: GSM2880750 ID: 302880750 15045. Primary T cell 722 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880749/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455400 Sample Accession: GSM2880749 ID: 302880749 15046. Primary T cell 721 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880748/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455399 Sample Accession: GSM2880748 ID: 302880748 15047. Primary T cell 720 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455398 Sample Accession: GSM2880747 ID: 302880747 15048. Primary T cell 719 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455397 Sample Accession: GSM2880746 ID: 302880746 15049. Primary T cell 718 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455396 Sample Accession: GSM2880745 ID: 302880745 15050. Primary T cell 717 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455395 Sample Accession: GSM2880744 ID: 302880744 15051. Primary T cell 716 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455394 Sample Accession: GSM2880743 ID: 302880743 15052. Primary T cell 715 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455393 Sample Accession: GSM2880742 ID: 302880742 15053. Primary T cell 714 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455392 Sample Accession: GSM2880741 ID: 302880741 15054. Primary T cell 713 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455391 Sample Accession: GSM2880740 ID: 302880740 15055. Primary T cell 712 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455390 Sample Accession: GSM2880739 ID: 302880739 15056. Primary T cell 711 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455389 Sample Accession: GSM2880738 ID: 302880738 15057. Primary T cell 710 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455388 Sample Accession: GSM2880737 ID: 302880737 15058. Primary T cell 709 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455387 Sample Accession: GSM2880736 ID: 302880736 15059. Primary T cell 708 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455386 Sample Accession: GSM2880735 ID: 302880735 15060. Primary T cell 707 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455385 Sample Accession: GSM2880734 ID: 302880734 15061. Primary T cell 706 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455384 Sample Accession: GSM2880733 ID: 302880733 15062. Primary T cell 705 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455383 Sample Accession: GSM2880732 ID: 302880732 15063. Primary T cell 704 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455382 Sample Accession: GSM2880731 ID: 302880731 15064. Primary T cell 703 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455381 Sample Accession: GSM2880730 ID: 302880730 15065. Primary T cell 702 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455380 Sample Accession: GSM2880729 ID: 302880729 15066. Primary T cell 701 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455379 Sample Accession: GSM2880728 ID: 302880728 15067. Primary T cell 700 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455378 Sample Accession: GSM2880727 ID: 302880727 15068. Primary T cell 699 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455377 Sample Accession: GSM2880726 ID: 302880726 15069. Primary T cell 698 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455376 Sample Accession: GSM2880725 ID: 302880725 15070. Primary T cell 697 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455375 Sample Accession: GSM2880724 ID: 302880724 15071. Primary T cell 696 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455374 Sample Accession: GSM2880723 ID: 302880723 15072. Primary T cell 695 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455373 Sample Accession: GSM2880722 ID: 302880722 15073. Primary T cell 694 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455372 Sample Accession: GSM2880721 ID: 302880721 15074. Primary T cell 693 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455371 Sample Accession: GSM2880720 ID: 302880720 15075. Primary T cell 692 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455370 Sample Accession: GSM2880719 ID: 302880719 15076. Primary T cell 691 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455369 Sample Accession: GSM2880718 ID: 302880718 15077. Primary T cell 690 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455368 Sample Accession: GSM2880717 ID: 302880717 15078. Primary T cell 689 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455367 Sample Accession: GSM2880716 ID: 302880716 15079. Primary T cell 688 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455366 Sample Accession: GSM2880715 ID: 302880715 15080. Primary T cell 687 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455365 Sample Accession: GSM2880714 ID: 302880714 15081. Primary T cell 686 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455364 Sample Accession: GSM2880713 ID: 302880713 15082. Primary T cell 685 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455363 Sample Accession: GSM2880712 ID: 302880712 15083. Primary T cell 684 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455362 Sample Accession: GSM2880711 ID: 302880711 15084. Primary T cell 683 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455361 Sample Accession: GSM2880710 ID: 302880710 15085. Primary T cell 682 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455360 Sample Accession: GSM2880709 ID: 302880709 15086. Primary T cell 681 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455359 Sample Accession: GSM2880708 ID: 302880708 15087. Primary T cell 680 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455358 Sample Accession: GSM2880707 ID: 302880707 15088. Primary T cell 679 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455357 Sample Accession: GSM2880706 ID: 302880706 15089. Primary T cell 678 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455356 Sample Accession: GSM2880705 ID: 302880705 15090. Primary T cell 677 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880704/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455355 Sample Accession: GSM2880704 ID: 302880704 15091. Primary T cell 676 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455354 Sample Accession: GSM2880703 ID: 302880703 15092. Primary T cell 675 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455353 Sample Accession: GSM2880702 ID: 302880702 15093. Primary T cell 674 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455352 Sample Accession: GSM2880701 ID: 302880701 15094. Primary T cell 673 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455351 Sample Accession: GSM2880700 ID: 302880700 15095. Primary T cell 672 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880699/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455350 Sample Accession: GSM2880699 ID: 302880699 15096. Primary T cell 671 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455349 Sample Accession: GSM2880698 ID: 302880698 15097. Primary T cell 670 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455348 Sample Accession: GSM2880697 ID: 302880697 15098. Primary T cell 669 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455347 Sample Accession: GSM2880696 ID: 302880696 15099. Primary T cell 668 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455346 Sample Accession: GSM2880695 ID: 302880695 15100. Primary T cell 667 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455345 Sample Accession: GSM2880694 ID: 302880694 15101. Primary T cell 666 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455344 Sample Accession: GSM2880693 ID: 302880693 15102. Primary T cell 665 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455343 Sample Accession: GSM2880692 ID: 302880692 15103. Primary T cell 664 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455342 Sample Accession: GSM2880691 ID: 302880691 15104. Primary T cell 663 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455341 Sample Accession: GSM2880690 ID: 302880690 15105. Primary T cell 662 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455340 Sample Accession: GSM2880689 ID: 302880689 15106. Primary T cell 661 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455339 Sample Accession: GSM2880688 ID: 302880688 15107. Primary T cell 660 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455338 Sample Accession: GSM2880687 ID: 302880687 15108. Primary T cell 659 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455337 Sample Accession: GSM2880686 ID: 302880686 15109. Primary T cell 658 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455336 Sample Accession: GSM2880685 ID: 302880685 15110. Primary T cell 657 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455335 Sample Accession: GSM2880684 ID: 302880684 15111. Primary T cell 656 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455334 Sample Accession: GSM2880683 ID: 302880683 15112. Primary T cell 655 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455333 Sample Accession: GSM2880682 ID: 302880682 15113. Primary T cell 654 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455332 Sample Accession: GSM2880681 ID: 302880681 15114. Primary T cell 653 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455331 Sample Accession: GSM2880680 ID: 302880680 15115. Primary T cell 652 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455330 Sample Accession: GSM2880679 ID: 302880679 15116. Primary T cell 651 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455329 Sample Accession: GSM2880678 ID: 302880678 15117. Primary T cell 650 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455328 Sample Accession: GSM2880677 ID: 302880677 15118. Primary T cell 649 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455327 Sample Accession: GSM2880676 ID: 302880676 15119. Primary T cell 648 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455326 Sample Accession: GSM2880675 ID: 302880675 15120. Primary T cell 647 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455325 Sample Accession: GSM2880674 ID: 302880674 15121. Primary T cell 646 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455324 Sample Accession: GSM2880673 ID: 302880673 15122. Primary T cell 645 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455323 Sample Accession: GSM2880672 ID: 302880672 15123. Primary T cell 644 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455322 Sample Accession: GSM2880671 ID: 302880671 15124. Primary T cell 643 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455321 Sample Accession: GSM2880670 ID: 302880670 15125. Primary T cell 642 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455320 Sample Accession: GSM2880669 ID: 302880669 15126. Primary T cell 641 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455319 Sample Accession: GSM2880668 ID: 302880668 15127. Primary T cell 640 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455318 Sample Accession: GSM2880667 ID: 302880667 15128. Primary T cell 639 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455317 Sample Accession: GSM2880666 ID: 302880666 15129. Primary T cell 638 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455316 Sample Accession: GSM2880665 ID: 302880665 15130. Primary T cell 637 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455315 Sample Accession: GSM2880664 ID: 302880664 15131. Primary T cell 636 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455314 Sample Accession: GSM2880663 ID: 302880663 15132. Primary T cell 635 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455313 Sample Accession: GSM2880662 ID: 302880662 15133. Primary T cell 634 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455312 Sample Accession: GSM2880661 ID: 302880661 15134. Primary T cell 633 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455311 Sample Accession: GSM2880660 ID: 302880660 15135. Primary T cell 632 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455310 Sample Accession: GSM2880659 ID: 302880659 15136. Primary T cell 631 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455309 Sample Accession: GSM2880658 ID: 302880658 15137. Primary T cell 630 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455308 Sample Accession: GSM2880657 ID: 302880657 15138. Primary T cell 629 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455307 Sample Accession: GSM2880656 ID: 302880656 15139. Primary T cell 628 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455306 Sample Accession: GSM2880655 ID: 302880655 15140. Primary T cell 627 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455305 Sample Accession: GSM2880654 ID: 302880654 15141. Primary T cell 626 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455304 Sample Accession: GSM2880653 ID: 302880653 15142. Primary T cell 625 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455303 Sample Accession: GSM2880652 ID: 302880652 15143. Primary T cell 624 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455302 Sample Accession: GSM2880651 ID: 302880651 15144. Primary T cell 623 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455301 Sample Accession: GSM2880650 ID: 302880650 15145. Primary T cell 622 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455300 Sample Accession: GSM2880649 ID: 302880649 15146. Primary T cell 621 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455299 Sample Accession: GSM2880648 ID: 302880648 15147. Primary T cell 620 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455298 Sample Accession: GSM2880647 ID: 302880647 15148. Primary T cell 619 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455297 Sample Accession: GSM2880646 ID: 302880646 15149. Primary T cell 618 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455296 Sample Accession: GSM2880645 ID: 302880645 15150. Primary T cell 617 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455295 Sample Accession: GSM2880644 ID: 302880644 15151. Primary T cell 616 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880643/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455294 Sample Accession: GSM2880643 ID: 302880643 15152. Primary T cell 615 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880642/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455293 Sample Accession: GSM2880642 ID: 302880642 15153. Primary T cell 614 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880641/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455292 Sample Accession: GSM2880641 ID: 302880641 15154. Primary T cell 613 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880640/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455291 Sample Accession: GSM2880640 ID: 302880640 15155. Primary T cell 612 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880639/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455290 Sample Accession: GSM2880639 ID: 302880639 15156. Primary T cell 611 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880638/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455289 Sample Accession: GSM2880638 ID: 302880638 15157. Primary T cell 610 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880637/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455288 Sample Accession: GSM2880637 ID: 302880637 15158. Primary T cell 609 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455287 Sample Accession: GSM2880636 ID: 302880636 15159. Primary T cell 608 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455190 Sample Accession: GSM2880635 ID: 302880635 15160. Primary T cell 607 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455189 Sample Accession: GSM2880634 ID: 302880634 15161. Primary T cell 606 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455188 Sample Accession: GSM2880633 ID: 302880633 15162. Primary T cell 605 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455187 Sample Accession: GSM2880632 ID: 302880632 15163. Primary T cell 604 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455186 Sample Accession: GSM2880631 ID: 302880631 15164. Primary T cell 603 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455185 Sample Accession: GSM2880630 ID: 302880630 15165. Primary T cell 602 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880629/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455184 Sample Accession: GSM2880629 ID: 302880629 15166. Primary T cell 601 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880628/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455183 Sample Accession: GSM2880628 ID: 302880628 15167. Primary T cell 600 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880627/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455182 Sample Accession: GSM2880627 ID: 302880627 15168. Primary T cell 599 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880626/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455181 Sample Accession: GSM2880626 ID: 302880626 15169. Primary T cell 598 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880625/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455180 Sample Accession: GSM2880625 ID: 302880625 15170. Primary T cell 597 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880624/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455179 Sample Accession: GSM2880624 ID: 302880624 15171. Primary T cell 596 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880623/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455178 Sample Accession: GSM2880623 ID: 302880623 15172. Primary T cell 595 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880622/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455177 Sample Accession: GSM2880622 ID: 302880622 15173. Primary T cell 594 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880621/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455176 Sample Accession: GSM2880621 ID: 302880621 15174. Primary T cell 593 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880620/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455175 Sample Accession: GSM2880620 ID: 302880620 15175. Primary T cell 592 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880619/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455174 Sample Accession: GSM2880619 ID: 302880619 15176. Primary T cell 591 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880618/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455173 Sample Accession: GSM2880618 ID: 302880618 15177. Primary T cell 590 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880617/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455172 Sample Accession: GSM2880617 ID: 302880617 15178. Primary T cell 589 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880616/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455171 Sample Accession: GSM2880616 ID: 302880616 15179. Primary T cell 588 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880615/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455170 Sample Accession: GSM2880615 ID: 302880615 15180. Primary T cell 587 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880614/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455169 Sample Accession: GSM2880614 ID: 302880614 15181. Primary T cell 586 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880613/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455168 Sample Accession: GSM2880613 ID: 302880613 15182. Primary T cell 585 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880612/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455167 Sample Accession: GSM2880612 ID: 302880612 15183. Primary T cell 584 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880611/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455166 Sample Accession: GSM2880611 ID: 302880611 15184. Primary T cell 583 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880610/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455165 Sample Accession: GSM2880610 ID: 302880610 15185. Primary T cell 582 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880609/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455164 Sample Accession: GSM2880609 ID: 302880609 15186. Primary T cell 581 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880608/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455163 Sample Accession: GSM2880608 ID: 302880608 15187. Primary T cell 580 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880607/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455162 Sample Accession: GSM2880607 ID: 302880607 15188. Primary T cell 579 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880606/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455161 Sample Accession: GSM2880606 ID: 302880606 15189. Primary T cell 578 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880605/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455160 Sample Accession: GSM2880605 ID: 302880605 15190. Primary T cell 577 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880604/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455159 Sample Accession: GSM2880604 ID: 302880604 15191. Primary T cell 576 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880603/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455158 Sample Accession: GSM2880603 ID: 302880603 15192. Primary T cell 575 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455157 Sample Accession: GSM2880602 ID: 302880602 15193. Primary T cell 574 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455156 Sample Accession: GSM2880601 ID: 302880601 15194. Primary T cell 573 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455155 Sample Accession: GSM2880600 ID: 302880600 15195. Primary T cell 572 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455154 Sample Accession: GSM2880599 ID: 302880599 15196. Primary T cell 571 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455153 Sample Accession: GSM2880598 ID: 302880598 15197. Primary T cell 570 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880597/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455152 Sample Accession: GSM2880597 ID: 302880597 15198. Primary T cell 569 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880596/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455151 Sample Accession: GSM2880596 ID: 302880596 15199. Primary T cell 568 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880595/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455150 Sample Accession: GSM2880595 ID: 302880595 15200. Primary T cell 567 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880594/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455149 Sample Accession: GSM2880594 ID: 302880594 15201. Primary T cell 566 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880593/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455148 Sample Accession: GSM2880593 ID: 302880593 15202. Primary T cell 565 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880592/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455147 Sample Accession: GSM2880592 ID: 302880592 15203. Primary T cell 564 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880591/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455146 Sample Accession: GSM2880591 ID: 302880591 15204. Primary T cell 563 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880590/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455145 Sample Accession: GSM2880590 ID: 302880590 15205. Primary T cell 562 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455144 Sample Accession: GSM2880589 ID: 302880589 15206. Primary T cell 561 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455143 Sample Accession: GSM2880588 ID: 302880588 15207. Primary T cell 560 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880587/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455142 Sample Accession: GSM2880587 ID: 302880587 15208. Primary T cell 559 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880586/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455141 Sample Accession: GSM2880586 ID: 302880586 15209. Primary T cell 558 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880585/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455140 Sample Accession: GSM2880585 ID: 302880585 15210. Primary T cell 557 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880584/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455139 Sample Accession: GSM2880584 ID: 302880584 15211. Primary T cell 556 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455138 Sample Accession: GSM2880583 ID: 302880583 15212. Primary T cell 555 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455137 Sample Accession: GSM2880582 ID: 302880582 15213. Primary T cell 554 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455136 Sample Accession: GSM2880581 ID: 302880581 15214. Primary T cell 553 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455135 Sample Accession: GSM2880580 ID: 302880580 15215. Primary T cell 552 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455134 Sample Accession: GSM2880579 ID: 302880579 15216. Primary T cell 551 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455133 Sample Accession: GSM2880578 ID: 302880578 15217. Primary T cell 550 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455132 Sample Accession: GSM2880577 ID: 302880577 15218. Primary T cell 549 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455131 Sample Accession: GSM2880576 ID: 302880576 15219. Primary T cell 548 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455130 Sample Accession: GSM2880575 ID: 302880575 15220. Primary T cell 547 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455129 Sample Accession: GSM2880574 ID: 302880574 15221. Primary T cell 546 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455128 Sample Accession: GSM2880573 ID: 302880573 15222. Primary T cell 545 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455127 Sample Accession: GSM2880572 ID: 302880572 15223. Primary T cell 544 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455126 Sample Accession: GSM2880571 ID: 302880571 15224. Primary T cell 543 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455125 Sample Accession: GSM2880570 ID: 302880570 15225. Primary T cell 542 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455124 Sample Accession: GSM2880569 ID: 302880569 15226. Primary T cell 541 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455123 Sample Accession: GSM2880568 ID: 302880568 15227. Primary T cell 540 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455122 Sample Accession: GSM2880567 ID: 302880567 15228. Primary T cell 539 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455121 Sample Accession: GSM2880566 ID: 302880566 15229. Primary T cell 538 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455120 Sample Accession: GSM2880565 ID: 302880565 15230. Primary T cell 537 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455119 Sample Accession: GSM2880564 ID: 302880564 15231. Primary T cell 536 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455118 Sample Accession: GSM2880563 ID: 302880563 15232. Primary T cell 535 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455117 Sample Accession: GSM2880562 ID: 302880562 15233. Primary T cell 534 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455116 Sample Accession: GSM2880561 ID: 302880561 15234. Primary T cell 533 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455115 Sample Accession: GSM2880560 ID: 302880560 15235. Primary T cell 532 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455114 Sample Accession: GSM2880559 ID: 302880559 15236. Primary T cell 531 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455113 Sample Accession: GSM2880558 ID: 302880558 15237. Primary T cell 530 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880557/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455112 Sample Accession: GSM2880557 ID: 302880557 15238. Primary T cell 529 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880556/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455111 Sample Accession: GSM2880556 ID: 302880556 15239. Primary T cell 528 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880555/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455110 Sample Accession: GSM2880555 ID: 302880555 15240. Primary T cell 527 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880554/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455109 Sample Accession: GSM2880554 ID: 302880554 15241. Primary T cell 526 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455108 Sample Accession: GSM2880553 ID: 302880553 15242. Primary T cell 525 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455107 Sample Accession: GSM2880552 ID: 302880552 15243. Primary T cell 524 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455106 Sample Accession: GSM2880551 ID: 302880551 15244. Primary T cell 523 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455105 Sample Accession: GSM2880550 ID: 302880550 15245. Primary T cell 522 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455104 Sample Accession: GSM2880549 ID: 302880549 15246. Primary T cell 521 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455103 Sample Accession: GSM2880548 ID: 302880548 15247. Primary T cell 520 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880547/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455102 Sample Accession: GSM2880547 ID: 302880547 15248. Primary T cell 519 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880546/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455101 Sample Accession: GSM2880546 ID: 302880546 15249. Primary T cell 518 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880545/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455100 Sample Accession: GSM2880545 ID: 302880545 15250. Primary T cell 517 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880544/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455099 Sample Accession: GSM2880544 ID: 302880544 15251. Primary T cell 516 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880543/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455098 Sample Accession: GSM2880543 ID: 302880543 15252. Primary T cell 515 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880542/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455097 Sample Accession: GSM2880542 ID: 302880542 15253. Primary T cell 514 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455096 Sample Accession: GSM2880541 ID: 302880541 15254. Primary T cell 513 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455095 Sample Accession: GSM2880540 ID: 302880540 15255. Primary T cell 512 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455094 Sample Accession: GSM2880539 ID: 302880539 15256. Primary T cell 511 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455093 Sample Accession: GSM2880538 ID: 302880538 15257. Primary T cell 510 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455092 Sample Accession: GSM2880537 ID: 302880537 15258. Primary T cell 509 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455091 Sample Accession: GSM2880536 ID: 302880536 15259. Primary T cell 508 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455090 Sample Accession: GSM2880535 ID: 302880535 15260. Primary T cell 507 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455089 Sample Accession: GSM2880534 ID: 302880534 15261. Primary T cell 506 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455088 Sample Accession: GSM2880533 ID: 302880533 15262. Primary T cell 505 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455087 Sample Accession: GSM2880532 ID: 302880532 15263. Primary T cell 504 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455086 Sample Accession: GSM2880531 ID: 302880531 15264. Primary T cell 503 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455085 Sample Accession: GSM2880530 ID: 302880530 15265. Primary T cell 502 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880529/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455084 Sample Accession: GSM2880529 ID: 302880529 15266. Primary T cell 501 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880528/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455083 Sample Accession: GSM2880528 ID: 302880528 15267. Primary T cell 500 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880527/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455082 Sample Accession: GSM2880527 ID: 302880527 15268. Primary T cell 499 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880526/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455081 Sample Accession: GSM2880526 ID: 302880526 15269. Primary T cell 498 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880525/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455080 Sample Accession: GSM2880525 ID: 302880525 15270. Primary T cell 497 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880524/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455079 Sample Accession: GSM2880524 ID: 302880524 15271. Primary T cell 496 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880523/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455078 Sample Accession: GSM2880523 ID: 302880523 15272. Primary T cell 495 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880522/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455077 Sample Accession: GSM2880522 ID: 302880522 15273. Primary T cell 494 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880521/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455076 Sample Accession: GSM2880521 ID: 302880521 15274. Primary T cell 493 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880520/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455075 Sample Accession: GSM2880520 ID: 302880520 15275. Primary T cell 492 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880519/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455074 Sample Accession: GSM2880519 ID: 302880519 15276. Primary T cell 491 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880518/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455073 Sample Accession: GSM2880518 ID: 302880518 15277. Primary T cell 490 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880517/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455072 Sample Accession: GSM2880517 ID: 302880517 15278. Primary T cell 489 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880516/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455071 Sample Accession: GSM2880516 ID: 302880516 15279. Primary T cell 488 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880515/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455070 Sample Accession: GSM2880515 ID: 302880515 15280. Primary T cell 487 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880514/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455069 Sample Accession: GSM2880514 ID: 302880514 15281. Primary T cell 486 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880513/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455068 Sample Accession: GSM2880513 ID: 302880513 15282. Primary T cell 485 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455067 Sample Accession: GSM2880512 ID: 302880512 15283. Primary T cell 484 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455066 Sample Accession: GSM2880511 ID: 302880511 15284. Primary T cell 483 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455065 Sample Accession: GSM2880510 ID: 302880510 15285. Primary T cell 482 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880509/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455064 Sample Accession: GSM2880509 ID: 302880509 15286. Primary T cell 481 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880508/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455063 Sample Accession: GSM2880508 ID: 302880508 15287. Primary T cell 480 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880507/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455062 Sample Accession: GSM2880507 ID: 302880507 15288. Primary T cell 479 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880506/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455061 Sample Accession: GSM2880506 ID: 302880506 15289. Primary T cell 478 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880505/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455060 Sample Accession: GSM2880505 ID: 302880505 15290. Primary T cell 477 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880504/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455059 Sample Accession: GSM2880504 ID: 302880504 15291. Primary T cell 476 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880503/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455058 Sample Accession: GSM2880503 ID: 302880503 15292. Primary T cell 475 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880502/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455057 Sample Accession: GSM2880502 ID: 302880502 15293. Primary T cell 474 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880501/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455056 Sample Accession: GSM2880501 ID: 302880501 15294. Primary T cell 473 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880500/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455055 Sample Accession: GSM2880500 ID: 302880500 15295. Primary T cell 472 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880499/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455054 Sample Accession: GSM2880499 ID: 302880499 15296. Primary T cell 471 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455053 Sample Accession: GSM2880498 ID: 302880498 15297. Primary T cell 470 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455052 Sample Accession: GSM2880497 ID: 302880497 15298. Primary T cell 469 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880496/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455051 Sample Accession: GSM2880496 ID: 302880496 15299. Primary T cell 468 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880495/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455050 Sample Accession: GSM2880495 ID: 302880495 15300. Primary T cell 467 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880494/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455049 Sample Accession: GSM2880494 ID: 302880494 15301. Primary T cell 466 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880493/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455048 Sample Accession: GSM2880493 ID: 302880493 15302. Primary T cell 465 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880492/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455047 Sample Accession: GSM2880492 ID: 302880492 15303. Primary T cell 464 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880491/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455046 Sample Accession: GSM2880491 ID: 302880491 15304. Primary T cell 463 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880490/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455045 Sample Accession: GSM2880490 ID: 302880490 15305. Primary T cell 462 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880489/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455044 Sample Accession: GSM2880489 ID: 302880489 15306. Primary T cell 461 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455043 Sample Accession: GSM2880488 ID: 302880488 15307. Primary T cell 460 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455042 Sample Accession: GSM2880487 ID: 302880487 15308. Primary T cell 459 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455041 Sample Accession: GSM2880486 ID: 302880486 15309. Primary T cell 458 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880485/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455040 Sample Accession: GSM2880485 ID: 302880485 15310. Primary T cell 457 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880484/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455039 Sample Accession: GSM2880484 ID: 302880484 15311. Primary T cell 456 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880483/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455038 Sample Accession: GSM2880483 ID: 302880483 15312. Primary T cell 455 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455037 Sample Accession: GSM2880482 ID: 302880482 15313. Primary T cell 454 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455036 Sample Accession: GSM2880481 ID: 302880481 15314. Primary T cell 453 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455035 Sample Accession: GSM2880480 ID: 302880480 15315. Primary T cell 452 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455034 Sample Accession: GSM2880479 ID: 302880479 15316. Primary T cell 451 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455033 Sample Accession: GSM2880478 ID: 302880478 15317. Primary T cell 450 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880477/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455032 Sample Accession: GSM2880477 ID: 302880477 15318. Primary T cell 449 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455031 Sample Accession: GSM2880476 ID: 302880476 15319. Primary T cell 448 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455030 Sample Accession: GSM2880475 ID: 302880475 15320. Primary T cell 447 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455029 Sample Accession: GSM2880474 ID: 302880474 15321. Primary T cell 446 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455028 Sample Accession: GSM2880473 ID: 302880473 15322. Primary T cell 445 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455027 Sample Accession: GSM2880472 ID: 302880472 15323. Primary T cell 444 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455026 Sample Accession: GSM2880471 ID: 302880471 15324. Primary T cell 443 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455025 Sample Accession: GSM2880470 ID: 302880470 15325. Primary T cell 442 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880469/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455024 Sample Accession: GSM2880469 ID: 302880469 15326. Primary T cell 441 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455023 Sample Accession: GSM2880468 ID: 302880468 15327. Primary T cell 440 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455022 Sample Accession: GSM2880467 ID: 302880467 15328. Primary T cell 439 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880466/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455021 Sample Accession: GSM2880466 ID: 302880466 15329. Primary T cell 438 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880465/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455020 Sample Accession: GSM2880465 ID: 302880465 15330. Primary T cell 437 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455019 Sample Accession: GSM2880464 ID: 302880464 15331. Primary T cell 436 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455018 Sample Accession: GSM2880463 ID: 302880463 15332. Primary T cell 435 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455017 Sample Accession: GSM2880462 ID: 302880462 15333. Primary T cell 434 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455016 Sample Accession: GSM2880461 ID: 302880461 15334. Primary T cell 433 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455015 Sample Accession: GSM2880460 ID: 302880460 15335. Primary T cell 432 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455014 Sample Accession: GSM2880459 ID: 302880459 15336. Primary T cell 431 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455013 Sample Accession: GSM2880458 ID: 302880458 15337. Primary T cell 430 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880457/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455012 Sample Accession: GSM2880457 ID: 302880457 15338. Primary T cell 429 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455011 Sample Accession: GSM2880456 ID: 302880456 15339. Primary T cell 428 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880455/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455010 Sample Accession: GSM2880455 ID: 302880455 15340. Primary T cell 427 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455009 Sample Accession: GSM2880454 ID: 302880454 15341. Primary T cell 426 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880453/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455008 Sample Accession: GSM2880453 ID: 302880453 15342. Primary T cell 425 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455007 Sample Accession: GSM2880452 ID: 302880452 15343. Primary T cell 424 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880451/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455006 Sample Accession: GSM2880451 ID: 302880451 15344. Primary T cell 423 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455005 Sample Accession: GSM2880450 ID: 302880450 15345. Primary T cell 422 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880449/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455004 Sample Accession: GSM2880449 ID: 302880449 15346. Primary T cell 421 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455003 Sample Accession: GSM2880448 ID: 302880448 15347. Primary T cell 420 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880447/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455002 Sample Accession: GSM2880447 ID: 302880447 15348. Primary T cell 419 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455001 Sample Accession: GSM2880446 ID: 302880446 15349. Primary T cell 418 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3455000 Sample Accession: GSM2880445 ID: 302880445 15350. Primary T cell 417 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454999 Sample Accession: GSM2880444 ID: 302880444 15351. Primary T cell 416 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880443/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454934 Sample Accession: GSM2880443 ID: 302880443 15352. Primary T cell 415 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880442/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454933 Sample Accession: GSM2880442 ID: 302880442 15353. Primary T cell 414 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880441/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454932 Sample Accession: GSM2880441 ID: 302880441 15354. Primary T cell 413 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880440/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454931 Sample Accession: GSM2880440 ID: 302880440 15355. Primary T cell 412 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880439/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454930 Sample Accession: GSM2880439 ID: 302880439 15356. Primary T cell 411 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880438/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454929 Sample Accession: GSM2880438 ID: 302880438 15357. Primary T cell 410 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880437/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454928 Sample Accession: GSM2880437 ID: 302880437 15358. Primary T cell 409 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880436/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454927 Sample Accession: GSM2880436 ID: 302880436 15359. Primary T cell 408 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880435/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454926 Sample Accession: GSM2880435 ID: 302880435 15360. Primary T cell 407 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880434/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454925 Sample Accession: GSM2880434 ID: 302880434 15361. Primary T cell 406 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880433/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454924 Sample Accession: GSM2880433 ID: 302880433 15362. Primary T cell 405 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880432/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454923 Sample Accession: GSM2880432 ID: 302880432 15363. Primary T cell 404 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880431/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454922 Sample Accession: GSM2880431 ID: 302880431 15364. Primary T cell 403 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880430/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454921 Sample Accession: GSM2880430 ID: 302880430 15365. Primary T cell 402 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880429/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454920 Sample Accession: GSM2880429 ID: 302880429 15366. Primary T cell 401 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880428/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454919 Sample Accession: GSM2880428 ID: 302880428 15367. Primary T cell 400 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880427/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454918 Sample Accession: GSM2880427 ID: 302880427 15368. Primary T cell 399 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880426/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454917 Sample Accession: GSM2880426 ID: 302880426 15369. Primary T cell 398 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880425/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454916 Sample Accession: GSM2880425 ID: 302880425 15370. Primary T cell 397 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454915 Sample Accession: GSM2880424 ID: 302880424 15371. Primary T cell 396 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454914 Sample Accession: GSM2880423 ID: 302880423 15372. Primary T cell 395 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454913 Sample Accession: GSM2880422 ID: 302880422 15373. Primary T cell 394 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454912 Sample Accession: GSM2880421 ID: 302880421 15374. Primary T cell 393 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454911 Sample Accession: GSM2880420 ID: 302880420 15375. Primary T cell 392 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454910 Sample Accession: GSM2880419 ID: 302880419 15376. Primary T cell 391 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454909 Sample Accession: GSM2880418 ID: 302880418 15377. Primary T cell 390 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454908 Sample Accession: GSM2880417 ID: 302880417 15378. Primary T cell 389 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454907 Sample Accession: GSM2880416 ID: 302880416 15379. Primary T cell 388 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454906 Sample Accession: GSM2880415 ID: 302880415 15380. Primary T cell 387 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454905 Sample Accession: GSM2880414 ID: 302880414 15381. Primary T cell 386 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454904 Sample Accession: GSM2880413 ID: 302880413 15382. Primary T cell 385 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454903 Sample Accession: GSM2880412 ID: 302880412 15383. Primary T cell 384 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454806 Sample Accession: GSM2880411 ID: 302880411 15384. Primary T cell 383 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454805 Sample Accession: GSM2880410 ID: 302880410 15385. Primary T cell 382 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454804 Sample Accession: GSM2880409 ID: 302880409 15386. Primary T cell 381 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454803 Sample Accession: GSM2880408 ID: 302880408 15387. Primary T cell 380 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454802 Sample Accession: GSM2880407 ID: 302880407 15388. Primary T cell 379 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454801 Sample Accession: GSM2880406 ID: 302880406 15389. Primary T cell 378 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454800 Sample Accession: GSM2880405 ID: 302880405 15390. Primary T cell 377 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454799 Sample Accession: GSM2880404 ID: 302880404 15391. Primary T cell 376 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454798 Sample Accession: GSM2880403 ID: 302880403 15392. Primary T cell 375 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454797 Sample Accession: GSM2880402 ID: 302880402 15393. Primary T cell 374 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880401/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454796 Sample Accession: GSM2880401 ID: 302880401 15394. Primary T cell 373 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454795 Sample Accession: GSM2880400 ID: 302880400 15395. Primary T cell 372 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454794 Sample Accession: GSM2880399 ID: 302880399 15396. Primary T cell 371 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454793 Sample Accession: GSM2880398 ID: 302880398 15397. Primary T cell 370 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454792 Sample Accession: GSM2880397 ID: 302880397 15398. Primary T cell 369 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454791 Sample Accession: GSM2880396 ID: 302880396 15399. Primary T cell 368 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454790 Sample Accession: GSM2880395 ID: 302880395 15400. Primary T cell 367 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454789 Sample Accession: GSM2880394 ID: 302880394 15401. Primary T cell 366 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454788 Sample Accession: GSM2880393 ID: 302880393 15402. Primary T cell 365 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454787 Sample Accession: GSM2880392 ID: 302880392 15403. Primary T cell 364 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454786 Sample Accession: GSM2880391 ID: 302880391 15404. Primary T cell 363 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454785 Sample Accession: GSM2880390 ID: 302880390 15405. Primary T cell 362 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454784 Sample Accession: GSM2880389 ID: 302880389 15406. Primary T cell 361 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880388/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454783 Sample Accession: GSM2880388 ID: 302880388 15407. Primary T cell 360 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880387/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454782 Sample Accession: GSM2880387 ID: 302880387 15408. Primary T cell 359 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880386/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454781 Sample Accession: GSM2880386 ID: 302880386 15409. Primary T cell 358 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880385/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454780 Sample Accession: GSM2880385 ID: 302880385 15410. Primary T cell 357 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880384/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454779 Sample Accession: GSM2880384 ID: 302880384 15411. Primary T cell 356 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880383/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454778 Sample Accession: GSM2880383 ID: 302880383 15412. Primary T cell 355 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454777 Sample Accession: GSM2880382 ID: 302880382 15413. Primary T cell 354 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454776 Sample Accession: GSM2880381 ID: 302880381 15414. Primary T cell 353 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454775 Sample Accession: GSM2880380 ID: 302880380 15415. Primary T cell 352 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454678 Sample Accession: GSM2880379 ID: 302880379 15416. Primary T cell 351 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454677 Sample Accession: GSM2880378 ID: 302880378 15417. Primary T cell 350 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454676 Sample Accession: GSM2880377 ID: 302880377 15418. Primary T cell 349 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454675 Sample Accession: GSM2880376 ID: 302880376 15419. Primary T cell 348 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454674 Sample Accession: GSM2880375 ID: 302880375 15420. Primary T cell 347 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454673 Sample Accession: GSM2880374 ID: 302880374 15421. Primary T cell 346 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454672 Sample Accession: GSM2880373 ID: 302880373 15422. Primary T cell 345 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880372/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454671 Sample Accession: GSM2880372 ID: 302880372 15423. Primary T cell 344 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880371/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454670 Sample Accession: GSM2880371 ID: 302880371 15424. Primary T cell 343 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880370/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454669 Sample Accession: GSM2880370 ID: 302880370 15425. Primary T cell 342 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880369/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454668 Sample Accession: GSM2880369 ID: 302880369 15426. Primary T cell 341 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880368/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454667 Sample Accession: GSM2880368 ID: 302880368 15427. Primary T cell 340 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880367/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454666 Sample Accession: GSM2880367 ID: 302880367 15428. Primary T cell 339 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880366/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454665 Sample Accession: GSM2880366 ID: 302880366 15429. Primary T cell 338 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880365/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454664 Sample Accession: GSM2880365 ID: 302880365 15430. Primary T cell 337 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880364/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454663 Sample Accession: GSM2880364 ID: 302880364 15431. Primary T cell 336 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880363/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454662 Sample Accession: GSM2880363 ID: 302880363 15432. Primary T cell 335 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880362/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454661 Sample Accession: GSM2880362 ID: 302880362 15433. Primary T cell 334 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880361/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454660 Sample Accession: GSM2880361 ID: 302880361 15434. Primary T cell 333 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880360/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454659 Sample Accession: GSM2880360 ID: 302880360 15435. Primary T cell 332 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454658 Sample Accession: GSM2880359 ID: 302880359 15436. Primary T cell 331 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454657 Sample Accession: GSM2880358 ID: 302880358 15437. Primary T cell 330 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880357/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454656 Sample Accession: GSM2880357 ID: 302880357 15438. Primary T cell 329 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880356/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454655 Sample Accession: GSM2880356 ID: 302880356 15439. Primary T cell 328 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880355/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454654 Sample Accession: GSM2880355 ID: 302880355 15440. Primary T cell 327 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880354/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454653 Sample Accession: GSM2880354 ID: 302880354 15441. Primary T cell 326 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880353/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454652 Sample Accession: GSM2880353 ID: 302880353 15442. Primary T cell 325 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880352/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454651 Sample Accession: GSM2880352 ID: 302880352 15443. Primary T cell 324 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880351/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454650 Sample Accession: GSM2880351 ID: 302880351 15444. Primary T cell 323 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880350/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454649 Sample Accession: GSM2880350 ID: 302880350 15445. Primary T cell 322 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880349/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454648 Sample Accession: GSM2880349 ID: 302880349 15446. Primary T cell 321 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880348/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454647 Sample Accession: GSM2880348 ID: 302880348 15447. Primary T cell 320 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880347/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454646 Sample Accession: GSM2880347 ID: 302880347 15448. Primary T cell 319 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880346/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454645 Sample Accession: GSM2880346 ID: 302880346 15449. Primary T cell 318 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880345/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454644 Sample Accession: GSM2880345 ID: 302880345 15450. Primary T cell 317 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880344/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454643 Sample Accession: GSM2880344 ID: 302880344 15451. Primary T cell 316 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880343/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454642 Sample Accession: GSM2880343 ID: 302880343 15452. Primary T cell 315 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880342/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454641 Sample Accession: GSM2880342 ID: 302880342 15453. Primary T cell 314 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880341/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454640 Sample Accession: GSM2880341 ID: 302880341 15454. Primary T cell 313 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454639 Sample Accession: GSM2880340 ID: 302880340 15455. Primary T cell 312 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454638 Sample Accession: GSM2880339 ID: 302880339 15456. Primary T cell 311 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454637 Sample Accession: GSM2880338 ID: 302880338 15457. Primary T cell 310 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454636 Sample Accession: GSM2880337 ID: 302880337 15458. Primary T cell 309 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454635 Sample Accession: GSM2880336 ID: 302880336 15459. Primary T cell 308 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454634 Sample Accession: GSM2880335 ID: 302880335 15460. Primary T cell 307 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880334/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454633 Sample Accession: GSM2880334 ID: 302880334 15461. Primary T cell 306 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880333/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454632 Sample Accession: GSM2880333 ID: 302880333 15462. Primary T cell 305 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454631 Sample Accession: GSM2880332 ID: 302880332 15463. Primary T cell 304 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880331/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454630 Sample Accession: GSM2880331 ID: 302880331 15464. Primary T cell 303 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880330/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454629 Sample Accession: GSM2880330 ID: 302880330 15465. Primary T cell 302 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880329/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454628 Sample Accession: GSM2880329 ID: 302880329 15466. Primary T cell 301 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454627 Sample Accession: GSM2880328 ID: 302880328 15467. Primary T cell 300 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454626 Sample Accession: GSM2880327 ID: 302880327 15468. Primary T cell 299 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454625 Sample Accession: GSM2880326 ID: 302880326 15469. Primary T cell 298 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880325/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454624 Sample Accession: GSM2880325 ID: 302880325 15470. Primary T cell 297 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880324/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454623 Sample Accession: GSM2880324 ID: 302880324 15471. Primary T cell 296 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880323/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454622 Sample Accession: GSM2880323 ID: 302880323 15472. Primary T cell 295 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454621 Sample Accession: GSM2880322 ID: 302880322 15473. Primary T cell 294 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454620 Sample Accession: GSM2880321 ID: 302880321 15474. Primary T cell 293 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454619 Sample Accession: GSM2880320 ID: 302880320 15475. Primary T cell 292 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454618 Sample Accession: GSM2880319 ID: 302880319 15476. Primary T cell 291 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454617 Sample Accession: GSM2880318 ID: 302880318 15477. Primary T cell 290 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454616 Sample Accession: GSM2880317 ID: 302880317 15478. Primary T cell 289 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454615 Sample Accession: GSM2880316 ID: 302880316 15479. Primary T cell 288 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454614 Sample Accession: GSM2880315 ID: 302880315 15480. Primary T cell 287 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454613 Sample Accession: GSM2880314 ID: 302880314 15481. Primary T cell 286 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454612 Sample Accession: GSM2880313 ID: 302880313 15482. Primary T cell 285 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454611 Sample Accession: GSM2880312 ID: 302880312 15483. Primary T cell 284 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454610 Sample Accession: GSM2880311 ID: 302880311 15484. Primary T cell 283 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454609 Sample Accession: GSM2880310 ID: 302880310 15485. Primary T cell 282 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454608 Sample Accession: GSM2880309 ID: 302880309 15486. Primary T cell 281 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454607 Sample Accession: GSM2880308 ID: 302880308 15487. Primary T cell 280 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454606 Sample Accession: GSM2880307 ID: 302880307 15488. Primary T cell 279 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454605 Sample Accession: GSM2880306 ID: 302880306 15489. Primary T cell 278 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454604 Sample Accession: GSM2880305 ID: 302880305 15490. Primary T cell 277 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454603 Sample Accession: GSM2880304 ID: 302880304 15491. Primary T cell 276 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454602 Sample Accession: GSM2880303 ID: 302880303 15492. Primary T cell 275 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454601 Sample Accession: GSM2880302 ID: 302880302 15493. Primary T cell 274 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454600 Sample Accession: GSM2880301 ID: 302880301 15494. Primary T cell 273 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454599 Sample Accession: GSM2880300 ID: 302880300 15495. Primary T cell 272 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454598 Sample Accession: GSM2880299 ID: 302880299 15496. Primary T cell 271 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454597 Sample Accession: GSM2880298 ID: 302880298 15497. Primary T cell 270 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454596 Sample Accession: GSM2880297 ID: 302880297 15498. Primary T cell 269 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454595 Sample Accession: GSM2880296 ID: 302880296 15499. Primary T cell 268 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454594 Sample Accession: GSM2880295 ID: 302880295 15500. Primary T cell 267 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454593 Sample Accession: GSM2880294 ID: 302880294 15501. Primary T cell 266 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880293/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454592 Sample Accession: GSM2880293 ID: 302880293 15502. Primary T cell 265 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880292/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454591 Sample Accession: GSM2880292 ID: 302880292 15503. Primary T cell 264 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880291/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454590 Sample Accession: GSM2880291 ID: 302880291 15504. Primary T cell 263 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880290/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454589 Sample Accession: GSM2880290 ID: 302880290 15505. Primary T cell 262 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454588 Sample Accession: GSM2880289 ID: 302880289 15506. Primary T cell 261 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454587 Sample Accession: GSM2880288 ID: 302880288 15507. Primary T cell 260 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454586 Sample Accession: GSM2880287 ID: 302880287 15508. Primary T cell 259 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454585 Sample Accession: GSM2880286 ID: 302880286 15509. Primary T cell 258 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880285/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454584 Sample Accession: GSM2880285 ID: 302880285 15510. Primary T cell 257 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880284/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454583 Sample Accession: GSM2880284 ID: 302880284 15511. Primary T cell 256 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454966 Sample Accession: GSM2880283 ID: 302880283 15512. Primary T cell 255 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880282/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454965 Sample Accession: GSM2880282 ID: 302880282 15513. Primary T cell 254 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880281/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454964 Sample Accession: GSM2880281 ID: 302880281 15514. Primary T cell 253 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454963 Sample Accession: GSM2880280 ID: 302880280 15515. Primary T cell 252 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454962 Sample Accession: GSM2880279 ID: 302880279 15516. Primary T cell 251 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454961 Sample Accession: GSM2880278 ID: 302880278 15517. Primary T cell 250 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454960 Sample Accession: GSM2880277 ID: 302880277 15518. Primary T cell 249 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454959 Sample Accession: GSM2880276 ID: 302880276 15519. Primary T cell 248 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454958 Sample Accession: GSM2880275 ID: 302880275 15520. Primary T cell 247 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454957 Sample Accession: GSM2880274 ID: 302880274 15521. Primary T cell 246 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454956 Sample Accession: GSM2880273 ID: 302880273 15522. Primary T cell 245 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454955 Sample Accession: GSM2880272 ID: 302880272 15523. Primary T cell 244 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454954 Sample Accession: GSM2880271 ID: 302880271 15524. Primary T cell 243 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454953 Sample Accession: GSM2880270 ID: 302880270 15525. Primary T cell 242 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454952 Sample Accession: GSM2880269 ID: 302880269 15526. Primary T cell 241 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454951 Sample Accession: GSM2880268 ID: 302880268 15527. Primary T cell 240 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454950 Sample Accession: GSM2880267 ID: 302880267 15528. Primary T cell 239 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454949 Sample Accession: GSM2880266 ID: 302880266 15529. Primary T cell 238 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454948 Sample Accession: GSM2880265 ID: 302880265 15530. Primary T cell 237 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454947 Sample Accession: GSM2880264 ID: 302880264 15531. Primary T cell 236 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454946 Sample Accession: GSM2880263 ID: 302880263 15532. Primary T cell 235 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454945 Sample Accession: GSM2880262 ID: 302880262 15533. Primary T cell 234 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454944 Sample Accession: GSM2880261 ID: 302880261 15534. Primary T cell 233 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454943 Sample Accession: GSM2880260 ID: 302880260 15535. Primary T cell 232 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454942 Sample Accession: GSM2880259 ID: 302880259 15536. Primary T cell 231 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454941 Sample Accession: GSM2880258 ID: 302880258 15537. Primary T cell 230 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454940 Sample Accession: GSM2880257 ID: 302880257 15538. Primary T cell 229 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454939 Sample Accession: GSM2880256 ID: 302880256 15539. Primary T cell 228 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454938 Sample Accession: GSM2880255 ID: 302880255 15540. Primary T cell 227 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454937 Sample Accession: GSM2880254 ID: 302880254 15541. Primary T cell 226 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454936 Sample Accession: GSM2880253 ID: 302880253 15542. Primary T cell 225 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454935 Sample Accession: GSM2880252 ID: 302880252 15543. Primary T cell 224 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454774 Sample Accession: GSM2880251 ID: 302880251 15544. Primary T cell 223 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454773 Sample Accession: GSM2880250 ID: 302880250 15545. Primary T cell 222 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454772 Sample Accession: GSM2880249 ID: 302880249 15546. Primary T cell 221 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454771 Sample Accession: GSM2880248 ID: 302880248 15547. Primary T cell 220 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454770 Sample Accession: GSM2880247 ID: 302880247 15548. Primary T cell 219 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454769 Sample Accession: GSM2880246 ID: 302880246 15549. Primary T cell 218 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454768 Sample Accession: GSM2880245 ID: 302880245 15550. Primary T cell 217 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454767 Sample Accession: GSM2880244 ID: 302880244 15551. Primary T cell 216 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454766 Sample Accession: GSM2880243 ID: 302880243 15552. Primary T cell 215 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880242/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454765 Sample Accession: GSM2880242 ID: 302880242 15553. Primary T cell 214 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880241/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454764 Sample Accession: GSM2880241 ID: 302880241 15554. Primary T cell 213 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880240/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454763 Sample Accession: GSM2880240 ID: 302880240 15555. Primary T cell 212 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880239/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454762 Sample Accession: GSM2880239 ID: 302880239 15556. Primary T cell 211 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454761 Sample Accession: GSM2880238 ID: 302880238 15557. Primary T cell 210 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454760 Sample Accession: GSM2880237 ID: 302880237 15558. Primary T cell 209 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454759 Sample Accession: GSM2880236 ID: 302880236 15559. Primary T cell 208 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454758 Sample Accession: GSM2880235 ID: 302880235 15560. Primary T cell 207 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880234/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454757 Sample Accession: GSM2880234 ID: 302880234 15561. Primary T cell 206 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880233/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454756 Sample Accession: GSM2880233 ID: 302880233 15562. Primary T cell 205 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880232/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454755 Sample Accession: GSM2880232 ID: 302880232 15563. Primary T cell 204 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880231/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454754 Sample Accession: GSM2880231 ID: 302880231 15564. Primary T cell 203 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880230/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454753 Sample Accession: GSM2880230 ID: 302880230 15565. Primary T cell 202 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880229/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454752 Sample Accession: GSM2880229 ID: 302880229 15566. Primary T cell 201 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880228/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454751 Sample Accession: GSM2880228 ID: 302880228 15567. Primary T cell 200 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880227/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454750 Sample Accession: GSM2880227 ID: 302880227 15568. Primary T cell 199 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880226/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454749 Sample Accession: GSM2880226 ID: 302880226 15569. Primary T cell 198 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880225/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454748 Sample Accession: GSM2880225 ID: 302880225 15570. Primary T cell 197 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880224/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454747 Sample Accession: GSM2880224 ID: 302880224 15571. Primary T cell 196 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454746 Sample Accession: GSM2880223 ID: 302880223 15572. Primary T cell 195 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454745 Sample Accession: GSM2880222 ID: 302880222 15573. Primary T cell 194 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454744 Sample Accession: GSM2880221 ID: 302880221 15574. Primary T cell 193 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454743 Sample Accession: GSM2880220 ID: 302880220 15575. Primary T cell 192 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454742 Sample Accession: GSM2880219 ID: 302880219 15576. Primary T cell 191 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454741 Sample Accession: GSM2880218 ID: 302880218 15577. Primary T cell 190 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454740 Sample Accession: GSM2880217 ID: 302880217 15578. Primary T cell 189 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454739 Sample Accession: GSM2880216 ID: 302880216 15579. Primary T cell 188 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880215/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454738 Sample Accession: GSM2880215 ID: 302880215 15580. Primary T cell 187 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880214/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454737 Sample Accession: GSM2880214 ID: 302880214 15581. Primary T cell 186 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454736 Sample Accession: GSM2880213 ID: 302880213 15582. Primary T cell 185 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454735 Sample Accession: GSM2880212 ID: 302880212 15583. Primary T cell 184 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880211/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454734 Sample Accession: GSM2880211 ID: 302880211 15584. Primary T cell 183 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454733 Sample Accession: GSM2880210 ID: 302880210 15585. Primary T cell 182 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880209/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454732 Sample Accession: GSM2880209 ID: 302880209 15586. Primary T cell 181 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454731 Sample Accession: GSM2880208 ID: 302880208 15587. Primary T cell 180 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880207/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454730 Sample Accession: GSM2880207 ID: 302880207 15588. Primary T cell 179 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454729 Sample Accession: GSM2880206 ID: 302880206 15589. Primary T cell 178 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880205/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454728 Sample Accession: GSM2880205 ID: 302880205 15590. Primary T cell 177 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454727 Sample Accession: GSM2880204 ID: 302880204 15591. Primary T cell 176 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880203/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454726 Sample Accession: GSM2880203 ID: 302880203 15592. Primary T cell 175 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454725 Sample Accession: GSM2880202 ID: 302880202 15593. Primary T cell 174 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880201/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454724 Sample Accession: GSM2880201 ID: 302880201 15594. Primary T cell 173 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880200/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454723 Sample Accession: GSM2880200 ID: 302880200 15595. Primary T cell 172 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880199/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454722 Sample Accession: GSM2880199 ID: 302880199 15596. Primary T cell 171 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880198/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454721 Sample Accession: GSM2880198 ID: 302880198 15597. Primary T cell 170 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880197/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454720 Sample Accession: GSM2880197 ID: 302880197 15598. Primary T cell 169 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880196/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454719 Sample Accession: GSM2880196 ID: 302880196 15599. Primary T cell 168 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880195/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454718 Sample Accession: GSM2880195 ID: 302880195 15600. Primary T cell 167 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880194/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454717 Sample Accession: GSM2880194 ID: 302880194 15601. Primary T cell 166 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880193/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454716 Sample Accession: GSM2880193 ID: 302880193 15602. Primary T cell 165 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880192/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454715 Sample Accession: GSM2880192 ID: 302880192 15603. Primary T cell 164 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880191/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454714 Sample Accession: GSM2880191 ID: 302880191 15604. Primary T cell 163 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880190/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454713 Sample Accession: GSM2880190 ID: 302880190 15605. Primary T cell 162 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880189/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454712 Sample Accession: GSM2880189 ID: 302880189 15606. Primary T cell 161 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454711 Sample Accession: GSM2880188 ID: 302880188 15607. Primary T cell 160 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454710 Sample Accession: GSM2880187 ID: 302880187 15608. Primary T cell 159 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454709 Sample Accession: GSM2880186 ID: 302880186 15609. Primary T cell 158 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454708 Sample Accession: GSM2880185 ID: 302880185 15610. Primary T cell 157 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454707 Sample Accession: GSM2880184 ID: 302880184 15611. Primary T cell 156 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454706 Sample Accession: GSM2880183 ID: 302880183 15612. Primary T cell 155 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454705 Sample Accession: GSM2880182 ID: 302880182 15613. Primary T cell 154 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454704 Sample Accession: GSM2880181 ID: 302880181 15614. Primary T cell 153 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454703 Sample Accession: GSM2880180 ID: 302880180 15615. Primary T cell 152 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454702 Sample Accession: GSM2880179 ID: 302880179 15616. Primary T cell 151 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454701 Sample Accession: GSM2880178 ID: 302880178 15617. Primary T cell 150 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454700 Sample Accession: GSM2880177 ID: 302880177 15618. Primary T cell 149 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454699 Sample Accession: GSM2880176 ID: 302880176 15619. Primary T cell 148 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454698 Sample Accession: GSM2880175 ID: 302880175 15620. Primary T cell 147 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454697 Sample Accession: GSM2880174 ID: 302880174 15621. Primary T cell 146 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454696 Sample Accession: GSM2880173 ID: 302880173 15622. Primary T cell 145 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454695 Sample Accession: GSM2880172 ID: 302880172 15623. Primary T cell 144 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454694 Sample Accession: GSM2880171 ID: 302880171 15624. Primary T cell 143 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880170/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454693 Sample Accession: GSM2880170 ID: 302880170 15625. Primary T cell 142 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880169/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454692 Sample Accession: GSM2880169 ID: 302880169 15626. Primary T cell 141 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880168/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454691 Sample Accession: GSM2880168 ID: 302880168 15627. Primary T cell 140 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880167/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454690 Sample Accession: GSM2880167 ID: 302880167 15628. Primary T cell 139 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880166/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454689 Sample Accession: GSM2880166 ID: 302880166 15629. Primary T cell 138 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880165/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454688 Sample Accession: GSM2880165 ID: 302880165 15630. Primary T cell 137 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880164/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454687 Sample Accession: GSM2880164 ID: 302880164 15631. Primary T cell 136 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880163/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454686 Sample Accession: GSM2880163 ID: 302880163 15632. Primary T cell 135 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880162/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454685 Sample Accession: GSM2880162 ID: 302880162 15633. Primary T cell 134 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880161/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454684 Sample Accession: GSM2880161 ID: 302880161 15634. Primary T cell 133 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880160/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454683 Sample Accession: GSM2880160 ID: 302880160 15635. Primary T cell 132 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880159/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454682 Sample Accession: GSM2880159 ID: 302880159 15636. Primary T cell 131 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880158/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454681 Sample Accession: GSM2880158 ID: 302880158 15637. Primary T cell 130 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880157/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454680 Sample Accession: GSM2880157 ID: 302880157 15638. Primary T cell 129 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880156/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454679 Sample Accession: GSM2880156 ID: 302880156 15639. Primary T cell 128 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880155/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454582 Sample Accession: GSM2880155 ID: 302880155 15640. Primary T cell 127 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880154/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454581 Sample Accession: GSM2880154 ID: 302880154 15641. Primary T cell 126 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880153/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454580 Sample Accession: GSM2880153 ID: 302880153 15642. Primary T cell 125 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880152/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454579 Sample Accession: GSM2880152 ID: 302880152 15643. Primary T cell 124 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880151/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454578 Sample Accession: GSM2880151 ID: 302880151 15644. Primary T cell 123 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880150/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454577 Sample Accession: GSM2880150 ID: 302880150 15645. Primary T cell 122 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454576 Sample Accession: GSM2880149 ID: 302880149 15646. Primary T cell 121 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454575 Sample Accession: GSM2880148 ID: 302880148 15647. Primary T cell 120 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454574 Sample Accession: GSM2880147 ID: 302880147 15648. Primary T cell 119 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454573 Sample Accession: GSM2880146 ID: 302880146 15649. Primary T cell 118 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454572 Sample Accession: GSM2880145 ID: 302880145 15650. Primary T cell 117 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454571 Sample Accession: GSM2880144 ID: 302880144 15651. Primary T cell 116 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454570 Sample Accession: GSM2880143 ID: 302880143 15652. Primary T cell 115 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454569 Sample Accession: GSM2880142 ID: 302880142 15653. Primary T cell 114 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880141/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454568 Sample Accession: GSM2880141 ID: 302880141 15654. Primary T cell 113 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880140/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454567 Sample Accession: GSM2880140 ID: 302880140 15655. Primary T cell 112 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880139/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454566 Sample Accession: GSM2880139 ID: 302880139 15656. Primary T cell 111 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880138/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454565 Sample Accession: GSM2880138 ID: 302880138 15657. Primary T cell 110 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880137/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454564 Sample Accession: GSM2880137 ID: 302880137 15658. Primary T cell 109 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880136/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454563 Sample Accession: GSM2880136 ID: 302880136 15659. Primary T cell 108 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454562 Sample Accession: GSM2880135 ID: 302880135 15660. Primary T cell 107 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454561 Sample Accession: GSM2880134 ID: 302880134 15661. Primary T cell 106 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454560 Sample Accession: GSM2880133 ID: 302880133 15662. Primary T cell 105 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454559 Sample Accession: GSM2880132 ID: 302880132 15663. Primary T cell 104 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454558 Sample Accession: GSM2880131 ID: 302880131 15664. Primary T cell 103 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454557 Sample Accession: GSM2880130 ID: 302880130 15665. Primary T cell 102 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454556 Sample Accession: GSM2880129 ID: 302880129 15666. Primary T cell 101 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454555 Sample Accession: GSM2880128 ID: 302880128 15667. Primary T cell 100 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880127/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454554 Sample Accession: GSM2880127 ID: 302880127 15668. Primary T cell 99 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454553 Sample Accession: GSM2880126 ID: 302880126 15669. Primary T cell 98 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454552 Sample Accession: GSM2880125 ID: 302880125 15670. Primary T cell 97 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454551 Sample Accession: GSM2880124 ID: 302880124 15671. Primary T cell 96 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880123/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454550 Sample Accession: GSM2880123 ID: 302880123 15672. Primary T cell 95 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880122/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454549 Sample Accession: GSM2880122 ID: 302880122 15673. Primary T cell 94 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880121/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454548 Sample Accession: GSM2880121 ID: 302880121 15674. Primary T cell 93 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880120/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454547 Sample Accession: GSM2880120 ID: 302880120 15675. Primary T cell 92 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454546 Sample Accession: GSM2880119 ID: 302880119 15676. Primary T cell 91 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454545 Sample Accession: GSM2880118 ID: 302880118 15677. Primary T cell 90 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454544 Sample Accession: GSM2880117 ID: 302880117 15678. Primary T cell 89 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454543 Sample Accession: GSM2880116 ID: 302880116 15679. Primary T cell 88 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880115/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454542 Sample Accession: GSM2880115 ID: 302880115 15680. Primary T cell 87 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880114/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454541 Sample Accession: GSM2880114 ID: 302880114 15681. Primary T cell 86 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880113/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454540 Sample Accession: GSM2880113 ID: 302880113 15682. Primary T cell 85 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880112/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454539 Sample Accession: GSM2880112 ID: 302880112 15683. Primary T cell 84 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880111/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454538 Sample Accession: GSM2880111 ID: 302880111 15684. Primary T cell 83 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880110/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454537 Sample Accession: GSM2880110 ID: 302880110 15685. Primary T cell 82 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880109/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454536 Sample Accession: GSM2880109 ID: 302880109 15686. Primary T cell 81 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880108/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454535 Sample Accession: GSM2880108 ID: 302880108 15687. Primary T cell 80 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880107/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454534 Sample Accession: GSM2880107 ID: 302880107 15688. Primary T cell 79 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880106/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454533 Sample Accession: GSM2880106 ID: 302880106 15689. Primary T cell 78 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880105/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454532 Sample Accession: GSM2880105 ID: 302880105 15690. Primary T cell 77 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880104/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454531 Sample Accession: GSM2880104 ID: 302880104 15691. Primary T cell 76 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880103/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454530 Sample Accession: GSM2880103 ID: 302880103 15692. Primary T cell 75 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880102/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454529 Sample Accession: GSM2880102 ID: 302880102 15693. Primary T cell 74 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880101/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454528 Sample Accession: GSM2880101 ID: 302880101 15694. Primary T cell 73 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880100/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454527 Sample Accession: GSM2880100 ID: 302880100 15695. Primary T cell 72 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880099/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454526 Sample Accession: GSM2880099 ID: 302880099 15696. Primary T cell 71 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880098/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454525 Sample Accession: GSM2880098 ID: 302880098 15697. Primary T cell 70 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880097/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454524 Sample Accession: GSM2880097 ID: 302880097 15698. Primary T cell 69 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880096/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454523 Sample Accession: GSM2880096 ID: 302880096 15699. Primary T cell 68 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880095/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454522 Sample Accession: GSM2880095 ID: 302880095 15700. Primary T cell 67 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880094/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454521 Sample Accession: GSM2880094 ID: 302880094 15701. Primary T cell 66 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880093/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454520 Sample Accession: GSM2880093 ID: 302880093 15702. Primary T cell 65 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880092/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454519 Sample Accession: GSM2880092 ID: 302880092 15703. Primary T cell 64 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880091/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454518 Sample Accession: GSM2880091 ID: 302880091 15704. Primary T cell 63 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880090/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454517 Sample Accession: GSM2880090 ID: 302880090 15705. Primary T cell 62 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880089/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454516 Sample Accession: GSM2880089 ID: 302880089 15706. Primary T cell 61 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880088/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454515 Sample Accession: GSM2880088 ID: 302880088 15707. Primary T cell 60 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880087/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454514 Sample Accession: GSM2880087 ID: 302880087 15708. Primary T cell 59 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880086/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454513 Sample Accession: GSM2880086 ID: 302880086 15709. Primary T cell 58 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880085/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454512 Sample Accession: GSM2880085 ID: 302880085 15710. Primary T cell 57 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880084/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454511 Sample Accession: GSM2880084 ID: 302880084 15711. Primary T cell 56 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880083/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454510 Sample Accession: GSM2880083 ID: 302880083 15712. Primary T cell 55 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880082/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454509 Sample Accession: GSM2880082 ID: 302880082 15713. Primary T cell 54 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880081/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454508 Sample Accession: GSM2880081 ID: 302880081 15714. Primary T cell 53 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880080/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454507 Sample Accession: GSM2880080 ID: 302880080 15715. Primary T cell 52 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880079/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454506 Sample Accession: GSM2880079 ID: 302880079 15716. Primary T cell 51 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880078/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454505 Sample Accession: GSM2880078 ID: 302880078 15717. Primary T cell 50 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880077/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454504 Sample Accession: GSM2880077 ID: 302880077 15718. Primary T cell 49 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880076/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454503 Sample Accession: GSM2880076 ID: 302880076 15719. Primary T cell 48 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880075/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454502 Sample Accession: GSM2880075 ID: 302880075 15720. Primary T cell 47 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880074/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454501 Sample Accession: GSM2880074 ID: 302880074 15721. Primary T cell 46 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880073/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454500 Sample Accession: GSM2880073 ID: 302880073 15722. Primary T cell 45 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880072/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454499 Sample Accession: GSM2880072 ID: 302880072 15723. Primary T cell 44 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880071/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454498 Sample Accession: GSM2880071 ID: 302880071 15724. Primary T cell 43 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880070/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454497 Sample Accession: GSM2880070 ID: 302880070 15725. Primary T cell 42 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880069/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454496 Sample Accession: GSM2880069 ID: 302880069 15726. Primary T cell 41 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880068/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454495 Sample Accession: GSM2880068 ID: 302880068 15727. Primary T cell 40 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880067/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454494 Sample Accession: GSM2880067 ID: 302880067 15728. Primary T cell 39 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880066/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454493 Sample Accession: GSM2880066 ID: 302880066 15729. Primary T cell 38 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880065/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454492 Sample Accession: GSM2880065 ID: 302880065 15730. Primary T cell 37 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880064/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454491 Sample Accession: GSM2880064 ID: 302880064 15731. Primary T cell 36 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880063/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454490 Sample Accession: GSM2880063 ID: 302880063 15732. Primary T cell 35 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880062/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454489 Sample Accession: GSM2880062 ID: 302880062 15733. Primary T cell 34 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454488 Sample Accession: GSM2880061 ID: 302880061 15734. Primary T cell 33 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454487 Sample Accession: GSM2880060 ID: 302880060 15735. Primary T cell 32 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454326 Sample Accession: GSM2880059 ID: 302880059 15736. Primary T cell 31 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880058/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454325 Sample Accession: GSM2880058 ID: 302880058 15737. Primary T cell 30 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880057/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454324 Sample Accession: GSM2880057 ID: 302880057 15738. Primary T cell 29 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880056/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454323 Sample Accession: GSM2880056 ID: 302880056 15739. Primary T cell 28 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880055/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454322 Sample Accession: GSM2880055 ID: 302880055 15740. Primary T cell 27 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454321 Sample Accession: GSM2880054 ID: 302880054 15741. Primary T cell 26 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454320 Sample Accession: GSM2880053 ID: 302880053 15742. Primary T cell 25 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454319 Sample Accession: GSM2880052 ID: 302880052 15743. Primary T cell 24 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454318 Sample Accession: GSM2880051 ID: 302880051 15744. Primary T cell 23 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454317 Sample Accession: GSM2880050 ID: 302880050 15745. Primary T cell 22 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880049/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454316 Sample Accession: GSM2880049 ID: 302880049 15746. Primary T cell 21 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454315 Sample Accession: GSM2880048 ID: 302880048 15747. Primary T cell 20 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454314 Sample Accession: GSM2880047 ID: 302880047 15748. Primary T cell 19 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454313 Sample Accession: GSM2880046 ID: 302880046 15749. Primary T cell 18 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454312 Sample Accession: GSM2880045 ID: 302880045 15750. Primary T cell 17 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454311 Sample Accession: GSM2880044 ID: 302880044 15751. Primary T cell 16 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454310 Sample Accession: GSM2880043 ID: 302880043 15752. Primary T cell 15 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454309 Sample Accession: GSM2880042 ID: 302880042 15753. Primary T cell 14 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454308 Sample Accession: GSM2880041 ID: 302880041 15754. Primary T cell 13 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454307 Sample Accession: GSM2880040 ID: 302880040 15755. Primary T cell 12 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454306 Sample Accession: GSM2880039 ID: 302880039 15756. Primary T cell 11 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454305 Sample Accession: GSM2880038 ID: 302880038 15757. Primary T cell 10 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454304 Sample Accession: GSM2880037 ID: 302880037 15758. Primary T cell 9 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454303 Sample Accession: GSM2880036 ID: 302880036 15759. Primary T cell 8 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454302 Sample Accession: GSM2880035 ID: 302880035 15760. Primary T cell 7 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454301 Sample Accession: GSM2880034 ID: 302880034 15761. Primary T cell 6 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454300 Sample Accession: GSM2880033 ID: 302880033 15762. Primary T cell 5 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454299 Sample Accession: GSM2880032 ID: 302880032 15763. Primary T cell 4 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454298 Sample Accession: GSM2880031 ID: 302880031 15764. Primary T cell 3 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454297 Sample Accession: GSM2880030 ID: 302880030 15765. Primary T cell 2 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454296 Sample Accession: GSM2880029 ID: 302880029 15766. Primary T cell 1 Organism: Homo sapiens Source name: Primary T cell sorted from peripheral blood Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454295 Sample Accession: GSM2880028 ID: 302880028 15767. Jurkat single cell 384 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454486 Sample Accession: GSM2880027 ID: 302880027 15768. Jurkat single cell 383 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454485 Sample Accession: GSM2880026 ID: 302880026 15769. Jurkat single cell 382 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454484 Sample Accession: GSM2880025 ID: 302880025 15770. Jurkat single cell 381 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454483 Sample Accession: GSM2880024 ID: 302880024 15771. Jurkat single cell 380 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454482 Sample Accession: GSM2880023 ID: 302880023 15772. Jurkat single cell 379 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454481 Sample Accession: GSM2880022 ID: 302880022 15773. Jurkat single cell 378 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454480 Sample Accession: GSM2880021 ID: 302880021 15774. Jurkat single cell 377 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454479 Sample Accession: GSM2880020 ID: 302880020 15775. Jurkat single cell 376 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454478 Sample Accession: GSM2880019 ID: 302880019 15776. Jurkat single cell 375 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454477 Sample Accession: GSM2880018 ID: 302880018 15777. Jurkat single cell 374 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454476 Sample Accession: GSM2880017 ID: 302880017 15778. Jurkat single cell 373 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454475 Sample Accession: GSM2880016 ID: 302880016 15779. Jurkat single cell 372 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454474 Sample Accession: GSM2880015 ID: 302880015 15780. Jurkat single cell 371 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454473 Sample Accession: GSM2880014 ID: 302880014 15781. Jurkat single cell 370 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454472 Sample Accession: GSM2880013 ID: 302880013 15782. Jurkat single cell 369 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454471 Sample Accession: GSM2880012 ID: 302880012 15783. Jurkat single cell 368 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454470 Sample Accession: GSM2880011 ID: 302880011 15784. Jurkat single cell 367 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454469 Sample Accession: GSM2880010 ID: 302880010 15785. Jurkat single cell 366 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454468 Sample Accession: GSM2880009 ID: 302880009 15786. Jurkat single cell 365 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454467 Sample Accession: GSM2880008 ID: 302880008 15787. Jurkat single cell 364 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454466 Sample Accession: GSM2880007 ID: 302880007 15788. Jurkat single cell 363 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454465 Sample Accession: GSM2880006 ID: 302880006 15789. Jurkat single cell 362 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880005/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454464 Sample Accession: GSM2880005 ID: 302880005 15790. Jurkat single cell 361 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454463 Sample Accession: GSM2880004 ID: 302880004 15791. Jurkat single cell 360 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454462 Sample Accession: GSM2880003 ID: 302880003 15792. Jurkat single cell 359 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454461 Sample Accession: GSM2880002 ID: 302880002 15793. Jurkat single cell 358 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454460 Sample Accession: GSM2880001 ID: 302880001 15794. Jurkat single cell 357 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2880nnn/GSM2880000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454459 Sample Accession: GSM2880000 ID: 302880000 15795. Jurkat single cell 356 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454458 Sample Accession: GSM2879999 ID: 302879999 15796. Jurkat single cell 355 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454457 Sample Accession: GSM2879998 ID: 302879998 15797. Jurkat single cell 354 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454456 Sample Accession: GSM2879997 ID: 302879997 15798. Jurkat single cell 353 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454455 Sample Accession: GSM2879996 ID: 302879996 15799. Jurkat single cell 352 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454454 Sample Accession: GSM2879995 ID: 302879995 15800. Jurkat single cell 351 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454453 Sample Accession: GSM2879994 ID: 302879994 15801. Jurkat single cell 350 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454452 Sample Accession: GSM2879993 ID: 302879993 15802. Jurkat single cell 349 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454451 Sample Accession: GSM2879992 ID: 302879992 15803. Jurkat single cell 348 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454450 Sample Accession: GSM2879991 ID: 302879991 15804. Jurkat single cell 347 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454449 Sample Accession: GSM2879990 ID: 302879990 15805. Jurkat single cell 346 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454448 Sample Accession: GSM2879989 ID: 302879989 15806. Jurkat single cell 345 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454447 Sample Accession: GSM2879988 ID: 302879988 15807. Jurkat single cell 344 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454446 Sample Accession: GSM2879987 ID: 302879987 15808. Jurkat single cell 343 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454445 Sample Accession: GSM2879986 ID: 302879986 15809. Jurkat single cell 342 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454444 Sample Accession: GSM2879985 ID: 302879985 15810. Jurkat single cell 341 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454443 Sample Accession: GSM2879984 ID: 302879984 15811. Jurkat single cell 340 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454442 Sample Accession: GSM2879983 ID: 302879983 15812. Jurkat single cell 339 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454441 Sample Accession: GSM2879982 ID: 302879982 15813. Jurkat single cell 338 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454440 Sample Accession: GSM2879981 ID: 302879981 15814. Jurkat single cell 337 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454439 Sample Accession: GSM2879980 ID: 302879980 15815. Jurkat single cell 336 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454438 Sample Accession: GSM2879979 ID: 302879979 15816. Jurkat single cell 335 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454437 Sample Accession: GSM2879978 ID: 302879978 15817. Jurkat single cell 334 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454436 Sample Accession: GSM2879977 ID: 302879977 15818. Jurkat single cell 333 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454435 Sample Accession: GSM2879976 ID: 302879976 15819. Jurkat single cell 332 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454434 Sample Accession: GSM2879975 ID: 302879975 15820. Jurkat single cell 331 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879974/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454433 Sample Accession: GSM2879974 ID: 302879974 15821. Jurkat single cell 330 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879973/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454432 Sample Accession: GSM2879973 ID: 302879973 15822. Jurkat single cell 329 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454431 Sample Accession: GSM2879972 ID: 302879972 15823. Jurkat single cell 328 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879971/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454430 Sample Accession: GSM2879971 ID: 302879971 15824. Jurkat single cell 327 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454429 Sample Accession: GSM2879970 ID: 302879970 15825. Jurkat single cell 326 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879969/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454428 Sample Accession: GSM2879969 ID: 302879969 15826. Jurkat single cell 325 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454427 Sample Accession: GSM2879968 ID: 302879968 15827. Jurkat single cell 324 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454426 Sample Accession: GSM2879967 ID: 302879967 15828. Jurkat single cell 323 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454425 Sample Accession: GSM2879966 ID: 302879966 15829. Jurkat single cell 322 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454424 Sample Accession: GSM2879965 ID: 302879965 15830. Jurkat single cell 321 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454423 Sample Accession: GSM2879964 ID: 302879964 15831. Jurkat single cell 320 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454262 Sample Accession: GSM2879963 ID: 302879963 15832. Jurkat single cell 319 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454261 Sample Accession: GSM2879962 ID: 302879962 15833. Jurkat single cell 318 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454260 Sample Accession: GSM2879961 ID: 302879961 15834. Jurkat single cell 317 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454259 Sample Accession: GSM2879960 ID: 302879960 15835. Jurkat single cell 316 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454258 Sample Accession: GSM2879959 ID: 302879959 15836. Jurkat single cell 315 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454257 Sample Accession: GSM2879958 ID: 302879958 15837. Jurkat single cell 314 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454256 Sample Accession: GSM2879957 ID: 302879957 15838. Jurkat single cell 313 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454255 Sample Accession: GSM2879956 ID: 302879956 15839. Jurkat single cell 312 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454254 Sample Accession: GSM2879955 ID: 302879955 15840. Jurkat single cell 311 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454253 Sample Accession: GSM2879954 ID: 302879954 15841. Jurkat single cell 310 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454252 Sample Accession: GSM2879953 ID: 302879953 15842. Jurkat single cell 309 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454251 Sample Accession: GSM2879952 ID: 302879952 15843. Jurkat single cell 308 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454250 Sample Accession: GSM2879951 ID: 302879951 15844. Jurkat single cell 307 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454249 Sample Accession: GSM2879950 ID: 302879950 15845. Jurkat single cell 306 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454248 Sample Accession: GSM2879949 ID: 302879949 15846. Jurkat single cell 305 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879948/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454247 Sample Accession: GSM2879948 ID: 302879948 15847. Jurkat single cell 304 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454246 Sample Accession: GSM2879947 ID: 302879947 15848. Jurkat single cell 303 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454245 Sample Accession: GSM2879946 ID: 302879946 15849. Jurkat single cell 302 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454244 Sample Accession: GSM2879945 ID: 302879945 15850. Jurkat single cell 301 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454243 Sample Accession: GSM2879944 ID: 302879944 15851. Jurkat single cell 300 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454242 Sample Accession: GSM2879943 ID: 302879943 15852. Jurkat single cell 299 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454241 Sample Accession: GSM2879942 ID: 302879942 15853. Jurkat single cell 298 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454240 Sample Accession: GSM2879941 ID: 302879941 15854. Jurkat single cell 297 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454239 Sample Accession: GSM2879940 ID: 302879940 15855. Jurkat single cell 296 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454238 Sample Accession: GSM2879939 ID: 302879939 15856. Jurkat single cell 295 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454237 Sample Accession: GSM2879938 ID: 302879938 15857. Jurkat single cell 294 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454236 Sample Accession: GSM2879937 ID: 302879937 15858. Jurkat single cell 293 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454235 Sample Accession: GSM2879936 ID: 302879936 15859. Jurkat single cell 292 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454234 Sample Accession: GSM2879935 ID: 302879935 15860. Jurkat single cell 291 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454233 Sample Accession: GSM2879934 ID: 302879934 15861. Jurkat single cell 290 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454232 Sample Accession: GSM2879933 ID: 302879933 15862. Jurkat single cell 289 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454231 Sample Accession: GSM2879932 ID: 302879932 15863. Jurkat single cell 288 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454230 Sample Accession: GSM2879931 ID: 302879931 15864. Jurkat single cell 287 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454229 Sample Accession: GSM2879930 ID: 302879930 15865. Jurkat single cell 286 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454228 Sample Accession: GSM2879929 ID: 302879929 15866. Jurkat single cell 285 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454227 Sample Accession: GSM2879928 ID: 302879928 15867. Jurkat single cell 284 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454226 Sample Accession: GSM2879927 ID: 302879927 15868. Jurkat single cell 283 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454225 Sample Accession: GSM2879926 ID: 302879926 15869. Jurkat single cell 282 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454224 Sample Accession: GSM2879925 ID: 302879925 15870. Jurkat single cell 281 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454223 Sample Accession: GSM2879924 ID: 302879924 15871. Jurkat single cell 280 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454222 Sample Accession: GSM2879923 ID: 302879923 15872. Jurkat single cell 279 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454221 Sample Accession: GSM2879922 ID: 302879922 15873. Jurkat single cell 278 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454220 Sample Accession: GSM2879921 ID: 302879921 15874. Jurkat single cell 277 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879920/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454219 Sample Accession: GSM2879920 ID: 302879920 15875. Jurkat single cell 276 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879919/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454218 Sample Accession: GSM2879919 ID: 302879919 15876. Jurkat single cell 275 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879918/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454217 Sample Accession: GSM2879918 ID: 302879918 15877. Jurkat single cell 274 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879917/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454216 Sample Accession: GSM2879917 ID: 302879917 15878. Jurkat single cell 273 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879916/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454215 Sample Accession: GSM2879916 ID: 302879916 15879. Jurkat single cell 272 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879915/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454214 Sample Accession: GSM2879915 ID: 302879915 15880. Jurkat single cell 271 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454213 Sample Accession: GSM2879914 ID: 302879914 15881. Jurkat single cell 270 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454212 Sample Accession: GSM2879913 ID: 302879913 15882. Jurkat single cell 269 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454211 Sample Accession: GSM2879912 ID: 302879912 15883. Jurkat single cell 268 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454210 Sample Accession: GSM2879911 ID: 302879911 15884. Jurkat single cell 267 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879910/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454209 Sample Accession: GSM2879910 ID: 302879910 15885. Jurkat single cell 266 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879909/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454208 Sample Accession: GSM2879909 ID: 302879909 15886. Jurkat single cell 265 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879908/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454207 Sample Accession: GSM2879908 ID: 302879908 15887. Jurkat single cell 264 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879907/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454206 Sample Accession: GSM2879907 ID: 302879907 15888. Jurkat single cell 263 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879906/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454205 Sample Accession: GSM2879906 ID: 302879906 15889. Jurkat single cell 262 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454204 Sample Accession: GSM2879905 ID: 302879905 15890. Jurkat single cell 261 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454203 Sample Accession: GSM2879904 ID: 302879904 15891. Jurkat single cell 260 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454202 Sample Accession: GSM2879903 ID: 302879903 15892. Jurkat single cell 259 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454201 Sample Accession: GSM2879902 ID: 302879902 15893. Jurkat single cell 258 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454200 Sample Accession: GSM2879901 ID: 302879901 15894. Jurkat single cell 257 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454199 Sample Accession: GSM2879900 ID: 302879900 15895. Jurkat single cell 256 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454294 Sample Accession: GSM2879899 ID: 302879899 15896. Jurkat single cell 255 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454293 Sample Accession: GSM2879898 ID: 302879898 15897. Jurkat single cell 254 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454292 Sample Accession: GSM2879897 ID: 302879897 15898. Jurkat single cell 253 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454291 Sample Accession: GSM2879896 ID: 302879896 15899. Jurkat single cell 252 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454290 Sample Accession: GSM2879895 ID: 302879895 15900. Jurkat single cell 251 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454289 Sample Accession: GSM2879894 ID: 302879894 15901. Jurkat single cell 250 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454288 Sample Accession: GSM2879893 ID: 302879893 15902. Jurkat single cell 249 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454287 Sample Accession: GSM2879892 ID: 302879892 15903. Jurkat single cell 248 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454286 Sample Accession: GSM2879891 ID: 302879891 15904. Jurkat single cell 247 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454285 Sample Accession: GSM2879890 ID: 302879890 15905. Jurkat single cell 246 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454284 Sample Accession: GSM2879889 ID: 302879889 15906. Jurkat single cell 245 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879888/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454283 Sample Accession: GSM2879888 ID: 302879888 15907. Jurkat single cell 244 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454282 Sample Accession: GSM2879887 ID: 302879887 15908. Jurkat single cell 243 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879886/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454281 Sample Accession: GSM2879886 ID: 302879886 15909. Jurkat single cell 242 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454280 Sample Accession: GSM2879885 ID: 302879885 15910. Jurkat single cell 241 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454279 Sample Accession: GSM2879884 ID: 302879884 15911. Jurkat single cell 240 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454278 Sample Accession: GSM2879883 ID: 302879883 15912. Jurkat single cell 239 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454277 Sample Accession: GSM2879882 ID: 302879882 15913. Jurkat single cell 238 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454276 Sample Accession: GSM2879881 ID: 302879881 15914. Jurkat single cell 237 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454275 Sample Accession: GSM2879880 ID: 302879880 15915. Jurkat single cell 236 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454274 Sample Accession: GSM2879879 ID: 302879879 15916. Jurkat single cell 235 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454273 Sample Accession: GSM2879878 ID: 302879878 15917. Jurkat single cell 234 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454272 Sample Accession: GSM2879877 ID: 302879877 15918. Jurkat single cell 233 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454271 Sample Accession: GSM2879876 ID: 302879876 15919. Jurkat single cell 232 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454270 Sample Accession: GSM2879875 ID: 302879875 15920. Jurkat single cell 231 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454269 Sample Accession: GSM2879874 ID: 302879874 15921. Jurkat single cell 230 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454268 Sample Accession: GSM2879873 ID: 302879873 15922. Jurkat single cell 229 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454267 Sample Accession: GSM2879872 ID: 302879872 15923. Jurkat single cell 228 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454266 Sample Accession: GSM2879871 ID: 302879871 15924. Jurkat single cell 227 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454265 Sample Accession: GSM2879870 ID: 302879870 15925. Jurkat single cell 226 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454264 Sample Accession: GSM2879869 ID: 302879869 15926. Jurkat single cell 225 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454263 Sample Accession: GSM2879868 ID: 302879868 15927. Jurkat single cell 224 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454134 Sample Accession: GSM2879867 ID: 302879867 15928. Jurkat single cell 223 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454133 Sample Accession: GSM2879866 ID: 302879866 15929. Jurkat single cell 222 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454132 Sample Accession: GSM2879865 ID: 302879865 15930. Jurkat single cell 221 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454131 Sample Accession: GSM2879864 ID: 302879864 15931. Jurkat single cell 220 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879863/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454130 Sample Accession: GSM2879863 ID: 302879863 15932. Jurkat single cell 219 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879862/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454129 Sample Accession: GSM2879862 ID: 302879862 15933. Jurkat single cell 218 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879861/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454128 Sample Accession: GSM2879861 ID: 302879861 15934. Jurkat single cell 217 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454127 Sample Accession: GSM2879860 ID: 302879860 15935. Jurkat single cell 216 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454126 Sample Accession: GSM2879859 ID: 302879859 15936. Jurkat single cell 215 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454125 Sample Accession: GSM2879858 ID: 302879858 15937. Jurkat single cell 214 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454124 Sample Accession: GSM2879857 ID: 302879857 15938. Jurkat single cell 213 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454123 Sample Accession: GSM2879856 ID: 302879856 15939. Jurkat single cell 212 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454122 Sample Accession: GSM2879855 ID: 302879855 15940. Jurkat single cell 211 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454121 Sample Accession: GSM2879854 ID: 302879854 15941. Jurkat single cell 210 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454120 Sample Accession: GSM2879853 ID: 302879853 15942. Jurkat single cell 209 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454119 Sample Accession: GSM2879852 ID: 302879852 15943. Jurkat single cell 208 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879851/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454118 Sample Accession: GSM2879851 ID: 302879851 15944. Jurkat single cell 207 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879850/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454117 Sample Accession: GSM2879850 ID: 302879850 15945. Jurkat single cell 206 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454116 Sample Accession: GSM2879849 ID: 302879849 15946. Jurkat single cell 205 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454115 Sample Accession: GSM2879848 ID: 302879848 15947. Jurkat single cell 204 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454114 Sample Accession: GSM2879847 ID: 302879847 15948. Jurkat single cell 203 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454113 Sample Accession: GSM2879846 ID: 302879846 15949. Jurkat single cell 202 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454112 Sample Accession: GSM2879845 ID: 302879845 15950. Jurkat single cell 201 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454111 Sample Accession: GSM2879844 ID: 302879844 15951. Jurkat single cell 200 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454110 Sample Accession: GSM2879843 ID: 302879843 15952. Jurkat single cell 199 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454109 Sample Accession: GSM2879842 ID: 302879842 15953. Jurkat single cell 198 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454108 Sample Accession: GSM2879841 ID: 302879841 15954. Jurkat single cell 197 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454107 Sample Accession: GSM2879840 ID: 302879840 15955. Jurkat single cell 196 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454106 Sample Accession: GSM2879839 ID: 302879839 15956. Jurkat single cell 195 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454105 Sample Accession: GSM2879838 ID: 302879838 15957. Jurkat single cell 194 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454104 Sample Accession: GSM2879837 ID: 302879837 15958. Jurkat single cell 193 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454103 Sample Accession: GSM2879836 ID: 302879836 15959. Jurkat single cell 192 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879835/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454422 Sample Accession: GSM2879835 ID: 302879835 15960. Jurkat single cell 191 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454421 Sample Accession: GSM2879834 ID: 302879834 15961. Jurkat single cell 190 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454420 Sample Accession: GSM2879833 ID: 302879833 15962. Jurkat single cell 189 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879832/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454419 Sample Accession: GSM2879832 ID: 302879832 15963. Jurkat single cell 188 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879831/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454418 Sample Accession: GSM2879831 ID: 302879831 15964. Jurkat single cell 187 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454417 Sample Accession: GSM2879830 ID: 302879830 15965. Jurkat single cell 186 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454416 Sample Accession: GSM2879829 ID: 302879829 15966. Jurkat single cell 185 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454415 Sample Accession: GSM2879828 ID: 302879828 15967. Jurkat single cell 184 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454414 Sample Accession: GSM2879827 ID: 302879827 15968. Jurkat single cell 183 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879826/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454413 Sample Accession: GSM2879826 ID: 302879826 15969. Jurkat single cell 182 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454412 Sample Accession: GSM2879825 ID: 302879825 15970. Jurkat single cell 181 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454411 Sample Accession: GSM2879824 ID: 302879824 15971. Jurkat single cell 180 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454410 Sample Accession: GSM2879823 ID: 302879823 15972. Jurkat single cell 179 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454409 Sample Accession: GSM2879822 ID: 302879822 15973. Jurkat single cell 178 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454408 Sample Accession: GSM2879821 ID: 302879821 15974. Jurkat single cell 177 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879820/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454407 Sample Accession: GSM2879820 ID: 302879820 15975. Jurkat single cell 176 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454406 Sample Accession: GSM2879819 ID: 302879819 15976. Jurkat single cell 175 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879818/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454405 Sample Accession: GSM2879818 ID: 302879818 15977. Jurkat single cell 174 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454404 Sample Accession: GSM2879817 ID: 302879817 15978. Jurkat single cell 173 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454403 Sample Accession: GSM2879816 ID: 302879816 15979. Jurkat single cell 172 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454402 Sample Accession: GSM2879815 ID: 302879815 15980. Jurkat single cell 171 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879814/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454401 Sample Accession: GSM2879814 ID: 302879814 15981. Jurkat single cell 170 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454400 Sample Accession: GSM2879813 ID: 302879813 15982. Jurkat single cell 169 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454399 Sample Accession: GSM2879812 ID: 302879812 15983. Jurkat single cell 168 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879811/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454398 Sample Accession: GSM2879811 ID: 302879811 15984. Jurkat single cell 167 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454397 Sample Accession: GSM2879810 ID: 302879810 15985. Jurkat single cell 166 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879809/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454396 Sample Accession: GSM2879809 ID: 302879809 15986. Jurkat single cell 165 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454395 Sample Accession: GSM2879808 ID: 302879808 15987. Jurkat single cell 164 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454394 Sample Accession: GSM2879807 ID: 302879807 15988. Jurkat single cell 163 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454393 Sample Accession: GSM2879806 ID: 302879806 15989. Jurkat single cell 162 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454392 Sample Accession: GSM2879805 ID: 302879805 15990. Jurkat single cell 161 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454391 Sample Accession: GSM2879804 ID: 302879804 15991. Jurkat single cell 160 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454390 Sample Accession: GSM2879803 ID: 302879803 15992. Jurkat single cell 159 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454389 Sample Accession: GSM2879802 ID: 302879802 15993. Jurkat single cell 158 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454388 Sample Accession: GSM2879801 ID: 302879801 15994. Jurkat single cell 157 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454387 Sample Accession: GSM2879800 ID: 302879800 15995. Jurkat single cell 156 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454386 Sample Accession: GSM2879799 ID: 302879799 15996. Jurkat single cell 155 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454385 Sample Accession: GSM2879798 ID: 302879798 15997. Jurkat single cell 154 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454384 Sample Accession: GSM2879797 ID: 302879797 15998. Jurkat single cell 153 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454383 Sample Accession: GSM2879796 ID: 302879796 15999. Jurkat single cell 152 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454382 Sample Accession: GSM2879795 ID: 302879795 16000. Jurkat single cell 151 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454381 Sample Accession: GSM2879794 ID: 302879794 16001. Jurkat single cell 150 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454380 Sample Accession: GSM2879793 ID: 302879793 16002. Jurkat single cell 149 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454379 Sample Accession: GSM2879792 ID: 302879792 16003. Jurkat single cell 148 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454378 Sample Accession: GSM2879791 ID: 302879791 16004. Jurkat single cell 147 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454377 Sample Accession: GSM2879790 ID: 302879790 16005. Jurkat single cell 146 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454376 Sample Accession: GSM2879789 ID: 302879789 16006. Jurkat single cell 145 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454375 Sample Accession: GSM2879788 ID: 302879788 16007. Jurkat single cell 144 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454374 Sample Accession: GSM2879787 ID: 302879787 16008. Jurkat single cell 143 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454373 Sample Accession: GSM2879786 ID: 302879786 16009. Jurkat single cell 142 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454372 Sample Accession: GSM2879785 ID: 302879785 16010. Jurkat single cell 141 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454371 Sample Accession: GSM2879784 ID: 302879784 16011. Jurkat single cell 140 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454370 Sample Accession: GSM2879783 ID: 302879783 16012. Jurkat single cell 139 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454369 Sample Accession: GSM2879782 ID: 302879782 16013. Jurkat single cell 138 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454368 Sample Accession: GSM2879781 ID: 302879781 16014. Jurkat single cell 137 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454367 Sample Accession: GSM2879780 ID: 302879780 16015. Jurkat single cell 136 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454366 Sample Accession: GSM2879779 ID: 302879779 16016. Jurkat single cell 135 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454365 Sample Accession: GSM2879778 ID: 302879778 16017. Jurkat single cell 134 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454364 Sample Accession: GSM2879777 ID: 302879777 16018. Jurkat single cell 133 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454363 Sample Accession: GSM2879776 ID: 302879776 16019. Jurkat single cell 132 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454362 Sample Accession: GSM2879775 ID: 302879775 16020. Jurkat single cell 131 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454361 Sample Accession: GSM2879774 ID: 302879774 16021. Jurkat single cell 130 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454360 Sample Accession: GSM2879773 ID: 302879773 16022. Jurkat single cell 129 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454359 Sample Accession: GSM2879772 ID: 302879772 16023. Jurkat single cell 128 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454358 Sample Accession: GSM2879771 ID: 302879771 16024. Jurkat single cell 127 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454357 Sample Accession: GSM2879770 ID: 302879770 16025. Jurkat single cell 126 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454356 Sample Accession: GSM2879769 ID: 302879769 16026. Jurkat single cell 125 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454355 Sample Accession: GSM2879768 ID: 302879768 16027. Jurkat single cell 124 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454354 Sample Accession: GSM2879767 ID: 302879767 16028. Jurkat single cell 123 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454353 Sample Accession: GSM2879766 ID: 302879766 16029. Jurkat single cell 122 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454352 Sample Accession: GSM2879765 ID: 302879765 16030. Jurkat single cell 121 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454351 Sample Accession: GSM2879764 ID: 302879764 16031. Jurkat single cell 120 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454350 Sample Accession: GSM2879763 ID: 302879763 16032. Jurkat single cell 119 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454349 Sample Accession: GSM2879762 ID: 302879762 16033. Jurkat single cell 118 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454348 Sample Accession: GSM2879761 ID: 302879761 16034. Jurkat single cell 117 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454347 Sample Accession: GSM2879760 ID: 302879760 16035. Jurkat single cell 116 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454346 Sample Accession: GSM2879759 ID: 302879759 16036. Jurkat single cell 115 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454345 Sample Accession: GSM2879758 ID: 302879758 16037. Jurkat single cell 114 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454344 Sample Accession: GSM2879757 ID: 302879757 16038. Jurkat single cell 113 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454343 Sample Accession: GSM2879756 ID: 302879756 16039. Jurkat single cell 112 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454342 Sample Accession: GSM2879755 ID: 302879755 16040. Jurkat single cell 111 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454341 Sample Accession: GSM2879754 ID: 302879754 16041. Jurkat single cell 110 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879753/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454340 Sample Accession: GSM2879753 ID: 302879753 16042. Jurkat single cell 109 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879752/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454339 Sample Accession: GSM2879752 ID: 302879752 16043. Jurkat single cell 108 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454338 Sample Accession: GSM2879751 ID: 302879751 16044. Jurkat single cell 107 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879750/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454337 Sample Accession: GSM2879750 ID: 302879750 16045. Jurkat single cell 106 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879749/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454336 Sample Accession: GSM2879749 ID: 302879749 16046. Jurkat single cell 105 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879748/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454335 Sample Accession: GSM2879748 ID: 302879748 16047. Jurkat single cell 104 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879747/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454334 Sample Accession: GSM2879747 ID: 302879747 16048. Jurkat single cell 103 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454333 Sample Accession: GSM2879746 ID: 302879746 16049. Jurkat single cell 102 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454332 Sample Accession: GSM2879745 ID: 302879745 16050. Jurkat single cell 101 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879744/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454331 Sample Accession: GSM2879744 ID: 302879744 16051. Jurkat single cell 100 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879743/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454330 Sample Accession: GSM2879743 ID: 302879743 16052. Jurkat single cell 99 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879742/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454329 Sample Accession: GSM2879742 ID: 302879742 16053. Jurkat single cell 98 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879741/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454328 Sample Accession: GSM2879741 ID: 302879741 16054. Jurkat single cell 97 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879740/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454327 Sample Accession: GSM2879740 ID: 302879740 16055. Jurkat single cell 96 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879739/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454198 Sample Accession: GSM2879739 ID: 302879739 16056. Jurkat single cell 95 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879738/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454197 Sample Accession: GSM2879738 ID: 302879738 16057. Jurkat single cell 94 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879737/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454196 Sample Accession: GSM2879737 ID: 302879737 16058. Jurkat single cell 93 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879736/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454195 Sample Accession: GSM2879736 ID: 302879736 16059. Jurkat single cell 92 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454194 Sample Accession: GSM2879735 ID: 302879735 16060. Jurkat single cell 91 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454193 Sample Accession: GSM2879734 ID: 302879734 16061. Jurkat single cell 90 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454192 Sample Accession: GSM2879733 ID: 302879733 16062. Jurkat single cell 89 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454191 Sample Accession: GSM2879732 ID: 302879732 16063. Jurkat single cell 88 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454190 Sample Accession: GSM2879731 ID: 302879731 16064. Jurkat single cell 87 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454189 Sample Accession: GSM2879730 ID: 302879730 16065. Jurkat single cell 86 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454188 Sample Accession: GSM2879729 ID: 302879729 16066. Jurkat single cell 85 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454187 Sample Accession: GSM2879728 ID: 302879728 16067. Jurkat single cell 84 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454186 Sample Accession: GSM2879727 ID: 302879727 16068. Jurkat single cell 83 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454185 Sample Accession: GSM2879726 ID: 302879726 16069. Jurkat single cell 82 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454184 Sample Accession: GSM2879725 ID: 302879725 16070. Jurkat single cell 81 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454183 Sample Accession: GSM2879724 ID: 302879724 16071. Jurkat single cell 80 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879723/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454182 Sample Accession: GSM2879723 ID: 302879723 16072. Jurkat single cell 79 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454181 Sample Accession: GSM2879722 ID: 302879722 16073. Jurkat single cell 78 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454180 Sample Accession: GSM2879721 ID: 302879721 16074. Jurkat single cell 77 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879720/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454179 Sample Accession: GSM2879720 ID: 302879720 16075. Jurkat single cell 76 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454178 Sample Accession: GSM2879719 ID: 302879719 16076. Jurkat single cell 75 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454177 Sample Accession: GSM2879718 ID: 302879718 16077. Jurkat single cell 74 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454176 Sample Accession: GSM2879717 ID: 302879717 16078. Jurkat single cell 73 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454175 Sample Accession: GSM2879716 ID: 302879716 16079. Jurkat single cell 72 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454174 Sample Accession: GSM2879715 ID: 302879715 16080. Jurkat single cell 71 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454173 Sample Accession: GSM2879714 ID: 302879714 16081. Jurkat single cell 70 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454172 Sample Accession: GSM2879713 ID: 302879713 16082. Jurkat single cell 69 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454171 Sample Accession: GSM2879712 ID: 302879712 16083. Jurkat single cell 68 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879711/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454170 Sample Accession: GSM2879711 ID: 302879711 16084. Jurkat single cell 67 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879710/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454169 Sample Accession: GSM2879710 ID: 302879710 16085. Jurkat single cell 66 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454168 Sample Accession: GSM2879709 ID: 302879709 16086. Jurkat single cell 65 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454167 Sample Accession: GSM2879708 ID: 302879708 16087. Jurkat single cell 64 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454166 Sample Accession: GSM2879707 ID: 302879707 16088. Jurkat single cell 63 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454165 Sample Accession: GSM2879706 ID: 302879706 16089. Jurkat single cell 62 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879705/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454164 Sample Accession: GSM2879705 ID: 302879705 16090. Jurkat single cell 61 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879704/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454163 Sample Accession: GSM2879704 ID: 302879704 16091. Jurkat single cell 60 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454162 Sample Accession: GSM2879703 ID: 302879703 16092. Jurkat single cell 59 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454161 Sample Accession: GSM2879702 ID: 302879702 16093. Jurkat single cell 58 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879701/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454160 Sample Accession: GSM2879701 ID: 302879701 16094. Jurkat single cell 57 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879700/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454159 Sample Accession: GSM2879700 ID: 302879700 16095. Jurkat single cell 56 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879699/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454158 Sample Accession: GSM2879699 ID: 302879699 16096. Jurkat single cell 55 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879698/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454157 Sample Accession: GSM2879698 ID: 302879698 16097. Jurkat single cell 54 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879697/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454156 Sample Accession: GSM2879697 ID: 302879697 16098. Jurkat single cell 53 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879696/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454155 Sample Accession: GSM2879696 ID: 302879696 16099. Jurkat single cell 52 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879695/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454154 Sample Accession: GSM2879695 ID: 302879695 16100. Jurkat single cell 51 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879694/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454153 Sample Accession: GSM2879694 ID: 302879694 16101. Jurkat single cell 50 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879693/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454152 Sample Accession: GSM2879693 ID: 302879693 16102. Jurkat single cell 49 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879692/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454151 Sample Accession: GSM2879692 ID: 302879692 16103. Jurkat single cell 48 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454150 Sample Accession: GSM2879691 ID: 302879691 16104. Jurkat single cell 47 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454149 Sample Accession: GSM2879690 ID: 302879690 16105. Jurkat single cell 46 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454148 Sample Accession: GSM2879689 ID: 302879689 16106. Jurkat single cell 45 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454147 Sample Accession: GSM2879688 ID: 302879688 16107. Jurkat single cell 44 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454146 Sample Accession: GSM2879687 ID: 302879687 16108. Jurkat single cell 43 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454145 Sample Accession: GSM2879686 ID: 302879686 16109. Jurkat single cell 42 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454144 Sample Accession: GSM2879685 ID: 302879685 16110. Jurkat single cell 41 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454143 Sample Accession: GSM2879684 ID: 302879684 16111. Jurkat single cell 40 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454142 Sample Accession: GSM2879683 ID: 302879683 16112. Jurkat single cell 39 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454141 Sample Accession: GSM2879682 ID: 302879682 16113. Jurkat single cell 38 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454140 Sample Accession: GSM2879681 ID: 302879681 16114. Jurkat single cell 37 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454139 Sample Accession: GSM2879680 ID: 302879680 16115. Jurkat single cell 36 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454138 Sample Accession: GSM2879679 ID: 302879679 16116. Jurkat single cell 35 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454137 Sample Accession: GSM2879678 ID: 302879678 16117. Jurkat single cell 34 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454136 Sample Accession: GSM2879677 ID: 302879677 16118. Jurkat single cell 33 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454135 Sample Accession: GSM2879676 ID: 302879676 16119. Jurkat single cell 32 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454102 Sample Accession: GSM2879675 ID: 302879675 16120. Jurkat single cell 31 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454101 Sample Accession: GSM2879674 ID: 302879674 16121. Jurkat single cell 30 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454100 Sample Accession: GSM2879673 ID: 302879673 16122. Jurkat single cell 29 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454099 Sample Accession: GSM2879672 ID: 302879672 16123. Jurkat single cell 28 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454098 Sample Accession: GSM2879671 ID: 302879671 16124. Jurkat single cell 27 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454097 Sample Accession: GSM2879670 ID: 302879670 16125. Jurkat single cell 26 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454096 Sample Accession: GSM2879669 ID: 302879669 16126. Jurkat single cell 25 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454095 Sample Accession: GSM2879668 ID: 302879668 16127. Jurkat single cell 24 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454094 Sample Accession: GSM2879667 ID: 302879667 16128. Jurkat single cell 23 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454093 Sample Accession: GSM2879666 ID: 302879666 16129. Jurkat single cell 22 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454092 Sample Accession: GSM2879665 ID: 302879665 16130. Jurkat single cell 21 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454091 Sample Accession: GSM2879664 ID: 302879664 16131. Jurkat single cell 20 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879663/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454090 Sample Accession: GSM2879663 ID: 302879663 16132. Jurkat single cell 19 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879662/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454089 Sample Accession: GSM2879662 ID: 302879662 16133. Jurkat single cell 18 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879661/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454088 Sample Accession: GSM2879661 ID: 302879661 16134. Jurkat single cell 17 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879660/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454087 Sample Accession: GSM2879660 ID: 302879660 16135. Jurkat single cell 16 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879659/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454086 Sample Accession: GSM2879659 ID: 302879659 16136. Jurkat single cell 15 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879658/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454085 Sample Accession: GSM2879658 ID: 302879658 16137. Jurkat single cell 14 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879657/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454084 Sample Accession: GSM2879657 ID: 302879657 16138. Jurkat single cell 13 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879656/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454083 Sample Accession: GSM2879656 ID: 302879656 16139. Jurkat single cell 12 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879655/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454082 Sample Accession: GSM2879655 ID: 302879655 16140. Jurkat single cell 11 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879654/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454081 Sample Accession: GSM2879654 ID: 302879654 16141. Jurkat single cell 10 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879653/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454080 Sample Accession: GSM2879653 ID: 302879653 16142. Jurkat single cell 9 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879652/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454079 Sample Accession: GSM2879652 ID: 302879652 16143. Jurkat single cell 8 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879651/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454078 Sample Accession: GSM2879651 ID: 302879651 16144. Jurkat single cell 7 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879650/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454077 Sample Accession: GSM2879650 ID: 302879650 16145. Jurkat single cell 6 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879649/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454076 Sample Accession: GSM2879649 ID: 302879649 16146. Jurkat single cell 5 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879648/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454075 Sample Accession: GSM2879648 ID: 302879648 16147. Jurkat single cell 4 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879647/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454074 Sample Accession: GSM2879647 ID: 302879647 16148. Jurkat single cell 3 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879646/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454073 Sample Accession: GSM2879646 ID: 302879646 16149. Jurkat single cell 2 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879645/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454072 Sample Accession: GSM2879645 ID: 302879645 16150. Jurkat single cell 1 Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL18573 Series: GSE107816 GSE107817 FTP download: GEO (CSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2879nnn/GSM2879644/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3454071 Sample Accession: GSM2879644 ID: 302879644 16151. Cdx2-/- Villus ATAC-seq biological rep2 Organism: Mus musculus Source name: Mouse intestinal villus epithelial cells Platform: GPL19057 Series: GSE98724 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2793507 Sample Accession: GSM2610676 ID: 302610676 16152. Cdx2-/- Villus ATAC-seq biological rep1 Organism: Mus musculus Source name: Mouse intestinal villus epithelial cells Platform: GPL19057 Series: GSE98724 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2793506 Sample Accession: GSM2610675 ID: 302610675 16153. Wild-type Villus ATAC-seq biological rep2 Organism: Mus musculus Source name: Mouse intestinal villus epithelial cells Platform: GPL19057 Series: GSE98724 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2793505 Sample Accession: GSM2610674 ID: 302610674 16154. Wild-type Villus ATAC-seq biological rep1 Organism: Mus musculus Source name: Mouse intestinal villus epithelial cells Platform: GPL19057 Series: GSE98724 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2793504 Sample Accession: GSM2610673 ID: 302610673 16155. Whole population AT2 cell ATAC seq Organism: Mus musculus Source name: Lung epithelium Platform: GPL17021 Series: GSE97052 GSE97055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2550nnn/GSM2550589/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2674387 Sample Accession: GSM2550589 ID: 302550589 16156. Axin2+ AT2 cell ATAC seq Organism: Mus musculus Source name: Lung epithelium Platform: GPL17021 Series: GSE97052 GSE97055 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2550nnn/GSM2550588/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2674386 Sample Accession: GSM2550588 ID: 302550588 16157. ATAC Library CM Rep 2 Organism: Homo sapiens Source name: ATAC Library CM Platform: GPL18573 Series: GSE106689 GSE106690 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3375419 Sample Accession: GSM2845475 ID: 302845475 16158. ATAC Library CM Rep 1 Organism: Homo sapiens Source name: ATAC Library CM Platform: GPL18573 Series: GSE106689 GSE106690 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3375418 Sample Accession: GSM2845474 ID: 302845474 16159. ATAC Library CP Rep 2 Organism: Homo sapiens Source name: ATAC Library CP Platform: GPL18573 Series: GSE106689 GSE106690 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3375417 Sample Accession: GSM2845473 ID: 302845473 16160. ATAC Library CP Rep 1 Organism: Homo sapiens Source name: ATAC Library CP Platform: GPL18573 Series: GSE106689 GSE106690 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3375416 Sample Accession: GSM2845472 ID: 302845472 16161. ATAC Library MES Rep 2 Organism: Homo sapiens Source name: ATAC Library MES Platform: GPL18573 Series: GSE106689 GSE106690 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3375415 Sample Accession: GSM2845471 ID: 302845471 16162. ATAC Library MES Rep 1 Organism: Homo sapiens Source name: ATAC Library MES Platform: GPL18573 Series: GSE106689 GSE106690 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3375414 Sample Accession: GSM2845470 ID: 302845470 16163. ATAC Library ESC Rep 2 Organism: Homo sapiens Source name: ATAC Library ESC Platform: GPL18573 Series: GSE106689 GSE106690 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845469/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3375413 Sample Accession: GSM2845469 ID: 302845469 16164. ATAC Library ESC Rep 1 Organism: Homo sapiens Source name: ATAC Library ESC Platform: GPL18573 Series: GSE106689 GSE106690 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3375412 Sample Accession: GSM2845468 ID: 302845468 16165. iPSC_Rep3 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836188/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343310 Sample Accession: GSM2836188 ID: 302836188 16166. iPSC_Rep2 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836187/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343309 Sample Accession: GSM2836187 ID: 302836187 16167. iPSC_Rep1 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836186/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343308 Sample Accession: GSM2836186 ID: 302836186 16168. Stage2_Rep3 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836185/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343307 Sample Accession: GSM2836185 ID: 302836185 16169. Stage2_Rep2 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836184/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343306 Sample Accession: GSM2836184 ID: 302836184 16170. Stage2_Rep1 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836183/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343305 Sample Accession: GSM2836183 ID: 302836183 16171. Stage1_Rep3 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836182/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343304 Sample Accession: GSM2836182 ID: 302836182 16172. Stage1_Rep2 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343303 Sample Accession: GSM2836181 ID: 302836181 16173. Stage1_Rep1 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343302 Sample Accession: GSM2836180 ID: 302836180 16174. MEF_Rep3 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343301 Sample Accession: GSM2836179 ID: 302836179 16175. MEF_Rep2 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343300 Sample Accession: GSM2836178 ID: 302836178 16176. MEF_Rep1 [ATAC-Seq] Organism: Mus musculus Source name: cells Platform: GPL17021 Series: GSE106331 GSE106334 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2836nnn/GSM2836177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3343299 Sample Accession: GSM2836177 ID: 302836177 16177. ATAC-seq_5F_D6-shEZH1-rep2 Organism: Homo sapiens Source name: Human MSCiPS1-derived 5F hematopoietic cells Platform: GPL18573 Series: GSE89416 GSE89418 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2371nnn/GSM2371314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2319390 Sample Accession: GSM2371314 ID: 302371314 16178. ATAC-seq_5F_D4-shEZH1-rep1 Organism: Homo sapiens Source name: Human MSCiPS1-derived 5F hematopoietic cells Platform: GPL18573 Series: GSE89416 GSE89418 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2371nnn/GSM2371313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2319389 Sample Accession: GSM2371313 ID: 302371313 16179. ATAC-seq_5F_F8-shLuc-rep2 Organism: Homo sapiens Source name: Human MSCiPS1-derived 5F hematopoietic cells Platform: GPL18573 Series: GSE89416 GSE89418 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2371nnn/GSM2371312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2319388 Sample Accession: GSM2371312 ID: 302371312 16180. ATAC-seq_5F_C11-shLuc-rep1 Organism: Homo sapiens Source name: Human MSCiPS1-derived 5F hematopoietic cells Platform: GPL18573 Series: GSE89416 GSE89418 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2371nnn/GSM2371311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2319387 Sample Accession: GSM2371311 ID: 302371311 16181. ATAC-seq_Ezh1_KO_AGM Organism: Mus musculus Source name: E10.5 AGM cells Platform: GPL19057 Series: GSE89416 GSE89418 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2371nnn/GSM2371317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2319393 Sample Accession: GSM2371317 ID: 302371317 16182. ATAC-seq_Ezh1_HET_AGM Organism: Mus musculus Source name: E10.5 AGM cells Platform: GPL19057 Series: GSE89416 GSE89418 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2371nnn/GSM2371316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2319392 Sample Accession: GSM2371316 ID: 302371316 16183. ATAC-seq_Ezh1_WT_AGM Organism: Mus musculus Source name: E10.5 AGM cells Platform: GPL19057 Series: GSE89416 GSE89418 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2371nnn/GSM2371315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2319391 Sample Accession: GSM2371315 ID: 302371315 16184. ATAC-Seq analysis of PpargKO mouse BMDM cells differentiated in the presence of MCSF (24hIL4) Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3408560 Sample Accession: GSM2867763 ID: 302867763 16185. ATAC-Seq analysis of PpargKO mouse BMDM cells differentiated in the presence of MCSF Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3408561 Sample Accession: GSM2867762 ID: 302867762 16186. ATAC-Seq analysis of RxrKO mouse BMDM cells differentiated in the presence of MCSF (24hIL4) Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3408558 Sample Accession: GSM2867761 ID: 302867761 16187. ATAC-Seq analysis of RxrKO mouse BMDM cells differentiated in the presence of MCSF Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3408559 Sample Accession: GSM2867760 ID: 302867760 16188. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (24hIL4) 2 Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3408556 Sample Accession: GSM2867759 ID: 302867759 16189. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF 2 Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3408557 Sample Accession: GSM2867758 ID: 302867758 16190. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (24hIL4) 1 Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716804 Sample Accession: GSM2867757 ID: 302867757 16191. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (6hIL4) Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716805 Sample Accession: GSM2867756 ID: 302867756 16192. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (1hIL4) Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716803 Sample Accession: GSM2867755 ID: 302867755 16193. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF 1 Organism: Mus musculus Source name: bone marrow-derived macrophage Platform: GPL17021 Series: GSE107456 GSE110465 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2867nnn/GSM2867754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716809 Sample Accession: GSM2867754 ID: 302867754 16194. DNMT_1028nB [ATAC-seq] Organism: Mus musculus Source name: naïve B cell (B220+ Fas- GL7-), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322343 Sample Accession: GSM2373075 ID: 302373075 16195. DNMT_1026nB [ATAC-seq] Organism: Mus musculus Source name: naïve B cell (B220+ Fas- GL7-), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322342 Sample Accession: GSM2373074 ID: 302373074 16196. DNMT_1024BMPC [ATAC-seq] Organism: Mus musculus Source name: bone marrow plasma cell (CD138+), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322341 Sample Accession: GSM2373073 ID: 302373073 16197. DNMT_1021BMPC [ATAC-seq] Organism: Mus musculus Source name: bone marrow plasma cell (CD138+), Dnmt3-sufficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322340 Sample Accession: GSM2373072 ID: 302373072 16198. DNMT_1020BMPC [ATAC-seq] Organism: Mus musculus Source name: bone marrow plasma cell (CD138+), Dnmt3-sufficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322339 Sample Accession: GSM2373071 ID: 302373071 16199. DNMT_1019BMPC [ATAC-seq] Organism: Mus musculus Source name: bone marrow plasma cell (CD138+), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322338 Sample Accession: GSM2373070 ID: 302373070 16200. DNMT_1018BMPC [ATAC-seq] Organism: Mus musculus Source name: bone marrow plasma cell (CD138+), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322337 Sample Accession: GSM2373069 ID: 302373069 16201. DNMT_1016BMPC [ATAC-seq] Organism: Mus musculus Source name: bone marrow plasma cell (CD138+), Dnmt3-sufficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322336 Sample Accession: GSM2373068 ID: 302373068 16202. DNMT_1012nB [ATAC-seq] Organism: Mus musculus Source name: naïve B cell (B220+ Fas- GL7-), Dnmt3-sufficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322335 Sample Accession: GSM2373067 ID: 302373067 16203. DNMT_1009nB [ATAC-seq] Organism: Mus musculus Source name: naïve B cell (B220+ Fas- GL7-), Dnmt3-sufficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322334 Sample Accession: GSM2373066 ID: 302373066 16204. DNMT_1008nB [ATAC-seq] Organism: Mus musculus Source name: naïve B cell (B220+ Fas- GL7-), Dnmt3-sufficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322333 Sample Accession: GSM2373065 ID: 302373065 16205. M1neg [ATAC-seq] Organism: Mus musculus Source name: PE-specific germinal center B cell (B220+ Fas+ GL7+ PE+), Dnmt3-sufficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322332 Sample Accession: GSM2373064 ID: 302373064 16206. F2neg [ATAC-seq] Organism: Mus musculus Source name: PE-specific germinal center B cell (B220+ Fas+ GL7+ PE+), Dnmt3-sufficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322331 Sample Accession: GSM2373063 ID: 302373063 16207. M1pos [ATAC-seq] Organism: Mus musculus Source name: PE-specific germinal center B cell (B220+ Fas+ GL7+ PE+), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322330 Sample Accession: GSM2373062 ID: 302373062 16208. F3pos [ATAC-seq] Organism: Mus musculus Source name: PE-specific germinal center B cell (B220+ Fas+ GL7+ PE+), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322329 Sample Accession: GSM2373061 ID: 302373061 16209. F2pos [ATAC-seq] Organism: Mus musculus Source name: PE-specific germinal center B cell (B220+ Fas+ GL7+ PE+), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322328 Sample Accession: GSM2373060 ID: 302373060 16210. F1pos [ATAC-seq] Organism: Mus musculus Source name: PE-specific germinal center B cell (B220+ Fas+ GL7+ PE+), Dnmt3-deficient Platform: GPL17021 Series: GSE89470 GSE89471 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2322327 Sample Accession: GSM2373059 ID: 302373059 16211. ATAC-seq_Ikzf2_KO_2 Organism: Mus musculus Source name: Leukemic stem cells from Ikzf2Δ/Δ mice Platform: GPL13112 Series: GSE108367 GSE120630 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2896nnn/GSM2896238/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3491085 Sample Accession: GSM2896238 ID: 302896238 16212. ATAC-seq_Ikzf2_KO_1 Organism: Mus musculus Source name: Leukemic stem cells from Ikzf2Δ/Δ mice Platform: GPL13112 Series: GSE108367 GSE120630 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2896nnn/GSM2896237/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3491084 Sample Accession: GSM2896237 ID: 302896237 16213. ATAC-seq_Ikzf2_WT_2 Organism: Mus musculus Source name: Leukemic stem cells from Ikzf2f/f mice Platform: GPL13112 Series: GSE108367 GSE120630 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2896nnn/GSM2896236/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3491083 Sample Accession: GSM2896236 ID: 302896236 16214. ATAC-seq_Ikzf2_WT_1 Organism: Mus musculus Source name: Leukemic stem cells from Ikzf2f/f mice Platform: GPL13112 Series: GSE108367 GSE120630 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2896nnn/GSM2896235/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3491082 Sample Accession: GSM2896235 ID: 302896235 16215. atac-seq_wt_rep2 Organism: Danio rerio Source name: whole embryos Platform: GPL20828 Series: GSE84602 GSE100286 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2677nnn/GSM2677306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2940621 Sample Accession: GSM2677306 ID: 302677306 16216. atac-seq_wt_rep1 Organism: Danio rerio Source name: whole embryos Platform: GPL20828 Series: GSE84602 GSE100286 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2677nnn/GSM2677305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2940620 Sample Accession: GSM2677305 ID: 302677305 16217. fvb-LAP-MYC;Arid1a Homo-T-ATAC-rep3 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600023 Sample Accession: GSM2515898 ID: 302515898 16218. fvb-LAP-MYC;Arid1a Homo-T-ATAC-rep2 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600022 Sample Accession: GSM2515897 ID: 302515897 16219. fvb-LAP-MYC;Arid1a Homo-T-ATAC-rep1 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600021 Sample Accession: GSM2515896 ID: 302515896 16220. fvb-LAP-MYC;Arid1a Het-T-ATAC-rep3 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600020 Sample Accession: GSM2515895 ID: 302515895 16221. fvb-LAP-MYC;Arid1a Het-T-ATAC-rep2 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600019 Sample Accession: GSM2515894 ID: 302515894 16222. fvb-LAP-MYC;Arid1a Het-T-ATAC-rep1 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600018 Sample Accession: GSM2515893 ID: 302515893 16223. fvb-LAP-MYC;WT-T-ATAC-rep4 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600017 Sample Accession: GSM2515892 ID: 302515892 16224. fvb-LAP-MYC;WT-T-ATAC-rep3 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600016 Sample Accession: GSM2515891 ID: 302515891 16225. fvb-LAP-MYC;WT-T-ATAC-rep2 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600015 Sample Accession: GSM2515890 ID: 302515890 16226. fvb-LAP-MYC;WT-T-ATAC-rep1 Organism: Mus musculus Source name: frozen liver tumor tissue Platform: GPL19057 Series: GSE95530 GSE95541 FTP download: GEO (BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2515nnn/GSM2515889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2600014 Sample Accession: GSM2515889 ID: 302515889 16227. Brg1-/- mTEClo 2 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087612 Sample Accession: GSM2740166 ID: 302740166 16228. Brg1-/- mTEClo 1 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087611 Sample Accession: GSM2740165 ID: 302740165 16229. Brg1+/+ mTEClo 2 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087610 Sample Accession: GSM2740164 ID: 302740164 16230. Brg1+/+ mTEClo 1 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087609 Sample Accession: GSM2740163 ID: 302740163 16231. Brg1-/- mTEChi 2 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087608 Sample Accession: GSM2740162 ID: 302740162 16232. Brg1-/- mTEChi 1 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087607 Sample Accession: GSM2740161 ID: 302740161 16233. Brg1+/+ mTEChi 2 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087606 Sample Accession: GSM2740160 ID: 302740160 16234. Brg1+/+ mTEChi 1 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087605 Sample Accession: GSM2740159 ID: 302740159 16235. Aire-/- mTEClo 2 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087604 Sample Accession: GSM2740158 ID: 302740158 16236. Aire-/- mTEClo 1 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087603 Sample Accession: GSM2740157 ID: 302740157 16237. Aire+/+ mTEClo 2 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087602 Sample Accession: GSM2740156 ID: 302740156 16238. Aire+/+ mTEClo 1 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087601 Sample Accession: GSM2740155 ID: 302740155 16239. Aire-/- mTEChi 2 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087600 Sample Accession: GSM2740154 ID: 302740154 16240. Aire-/- mTEChi 1 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087599 Sample Accession: GSM2740153 ID: 302740153 16241. Aire+/+ mTEChi 2 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087598 Sample Accession: GSM2740152 ID: 302740152 16242. Aire+/+ mTEChi 1 [ATAC-Seq] Organism: Mus musculus Source name: Thymus Platform: GPL13112 Series: GSE102526 GSE102527 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3087597 Sample Accession: GSM2740151 ID: 302740151 16243. nos-1(gv5) nos-2(RNAi) ATAC-seq (Replicate) Organism: Caenorhabditis elegans Source name: Sorted L1 PGCs Platform: GPL18245 Series: GSE100651 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2969573 Sample Accession: GSM2690484 ID: 302690484 16244. nos-1(gv5) nos-2(RNAi) ATAC-seq Organism: Caenorhabditis elegans Source name: Sorted L1 PGCs Platform: GPL18245 Series: GSE100651 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2969572 Sample Accession: GSM2690483 ID: 302690483 16245. Wild-type ATAC-seq (Replicate) Organism: Caenorhabditis elegans Source name: Sorted L1 PGCs Platform: GPL18245 Series: GSE100651 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2969571 Sample Accession: GSM2690482 ID: 302690482 16246. Wild-type ATAC-seq Organism: Caenorhabditis elegans Source name: Sorted L1 PGCs Platform: GPL18245 Series: GSE100651 FTP download: GEO (XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2690nnn/GSM2690481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2969570 Sample Accession: GSM2690481 ID: 302690481 16247. ATAC-seq distal femur E15.5 Organism: Mus musculus Source name: Distal femoral growth plates E15.5 Platform: GPL19057 Series: GSE100585 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2687nnn/GSM2687479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2962813 Sample Accession: GSM2687479 ID: 302687479 16248. ATAC-seq proximal femur E15.5 Organism: Mus musculus Source name: Proximal femoral growth plates E15.5 Platform: GPL19057 Series: GSE100585 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2687nnn/GSM2687478/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2962812 Sample Accession: GSM2687478 ID: 302687478 16249. ATACseq-Patski-2-4clone Organism: Mus musculus x Mus spretus Source name: Patski cells Platform: GPL20213 Series: GSE59779 GSE107290 FTP download: GEO (BED, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3418105 Sample Accession: GSM2863765 ID: 302863765 16250. ATACseq-Patski-Inv-Dxz4 Organism: Mus musculus x Mus spretus Source name: Patski cells Platform: GPL20213 Series: GSE59779 GSE107290 FTP download: GEO (BED, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3418104 Sample Accession: GSM2863764 ID: 302863764 16251. ATACseq-Patski-Del-hinge Organism: Mus musculus x Mus spretus Source name: Patski cells Platform: GPL20213 Series: GSE59779 GSE107290 FTP download: GEO (BED, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3418103 Sample Accession: GSM2863763 ID: 302863763 16252. ATACseq-Patski-WT Organism: Mus musculus x Mus spretus Source name: Patski cells Platform: GPL20213 Series: GSE59779 GSE107290 FTP download: GEO (BED, XLS) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2863nnn/GSM2863762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3418102 Sample Accession: GSM2863762 ID: 302863762 16253. ATAC-seq LPL Treg Ahr KO (rep2) Organism: Mus musculus Source name: Lg. Int. Lamina Propria Treg Platform: GPL17021 Series: GSE106083 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2830nnn/GSM2830218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3324099 Sample Accession: GSM2830218 ID: 302830218 16254. ATAC-seq LPL Treg Ahr WT (rep2) Organism: Mus musculus Source name: Lg. Int. Lamina Propria Treg Platform: GPL17021 Series: GSE106083 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2830nnn/GSM2830217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3324098 Sample Accession: GSM2830217 ID: 302830217 16255. ATAC-seq LPL Treg Ahr KO Organism: Mus musculus Source name: Lg. Int. Lamina Propria Treg Platform: GPL17021 Series: GSE106083 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2829nnn/GSM2829280/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316337 Sample Accession: GSM2829280 ID: 302829280 16256. ATAC-seq LPL Treg Ahr WT Organism: Mus musculus Source name: Lg. Int. Lamina Propria Treg Platform: GPL17021 Series: GSE106083 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2829nnn/GSM2829279/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3316336 Sample Accession: GSM2829279 ID: 302829279 16257. BRAF metastatic melanoma ATAC-seq [501MEL] Organism: Homo sapiens Source name: Cell culture Platform: GPL11154 Series: GSE94488 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2476nnn/GSM2476340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2537499 Sample Accession: GSM2476340 ID: 302476340 16258. NRAS metastatic melanoma ATAC-seq [SKmel147] Organism: Homo sapiens Source name: Cell culture Platform: GPL11154 Series: GSE94488 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2476nnn/GSM2476339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2537498 Sample Accession: GSM2476339 ID: 302476339 16259. Normal Human Melanocytes ATAC-seq [NHM1] Organism: Homo sapiens Source name: Foreskin Platform: GPL11154 Series: GSE94488 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2476nnn/GSM2476338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2537497 Sample Accession: GSM2476338 ID: 302476338 16260. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (1hIL4, rep2) Organism: Mus musculus Source name: bone marrow Platform: GPL17021 Series: GSE106702 GSE106706 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3354451 Sample Accession: GSM2845673 ID: 302845673 16261. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (1hIL4, rep1) Organism: Mus musculus Source name: bone marrow Platform: GPL17021 Series: GSE106702 GSE106706 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3354452 Sample Accession: GSM2845672 ID: 302845672 16262. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (ctrl, rep2) Organism: Mus musculus Source name: bone marrow Platform: GPL17021 Series: GSE106702 GSE106706 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3354449 Sample Accession: GSM2845671 ID: 302845671 16263. ATAC-Seq analysis of Wt mouse BMDM cells differentiated in the presence of MCSF (ctrl, rep1) Organism: Mus musculus Source name: bone marrow Platform: GPL17021 Series: GSE106702 GSE106706 FTP download: GEO (TSV) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2845nnn/GSM2845670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3354450 Sample Accession: GSM2845670 ID: 302845670 16264. E14-LY_rep2 Organism: Mus musculus Source name: Otocysts from E14 embryos (treated with LY411575) Platform: GPL13112 Series: GSE102649 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2742nnn/GSM2742222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3092854 Sample Accession: GSM2742222 ID: 302742222 16265. E14-LY_rep1 Organism: Mus musculus Source name: Otocysts from E14 embryos (treated with LY411575) Platform: GPL13112 Series: GSE102649 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2742nnn/GSM2742221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3092853 Sample Accession: GSM2742221 ID: 302742221 16266. E14-WT_rep2 Organism: Mus musculus Source name: Otocysts from E14 embryos (WT) Platform: GPL13112 Series: GSE102649 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2742nnn/GSM2742220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3092852 Sample Accession: GSM2742220 ID: 302742220 16267. E14-WT_rep1 Organism: Mus musculus Source name: Otocysts from E14 embryos (WT) Platform: GPL13112 Series: GSE102649 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2742nnn/GSM2742219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3092851 Sample Accession: GSM2742219 ID: 302742219 16268. E10_rep2 Organism: Mus musculus Source name: Otocysts from E10.5 embryos Platform: GPL13112 Series: GSE102649 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2742nnn/GSM2742218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3092850 Sample Accession: GSM2742218 ID: 302742218 16269. E10_rep1 Organism: Mus musculus Source name: Otocysts from E10.5 embryos Platform: GPL13112 Series: GSE102649 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2742nnn/GSM2742217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3092849 Sample Accession: GSM2742217 ID: 302742217 16270. MEF Rep3 Organism: Mus musculus Source name: Mouse embryonic fibroblasts Platform: GPL13112 Series: GSE85175 GSE85178 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259223/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1998700 Sample Accession: GSM2259223 ID: 302259223 16271. MEF Rep2 Organism: Mus musculus Source name: Mouse embryonic fibroblasts Platform: GPL13112 Series: GSE85175 GSE85178 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259222/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1998699 Sample Accession: GSM2259222 ID: 302259222 16272. MEF Rep1 Organism: Mus musculus Source name: Mouse embryonic fibroblasts Platform: GPL13112 Series: GSE85175 GSE85178 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259221/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1998698 Sample Accession: GSM2259221 ID: 302259221 16273. D3 3CA Rep2 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, presence of Smad3CA expression, day 3 of reprogramming Platform: GPL13112 Series: GSE85175 GSE85178 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259220/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1998697 Sample Accession: GSM2259220 ID: 302259220 16274. D3 3CA Rep1 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, presence of Smad3CA expression, day 3 of reprogramming Platform: GPL13112 Series: GSE85175 GSE85178 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259219/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1998696 Sample Accession: GSM2259219 ID: 302259219 16275. D3 BFP Rep3 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, absence of Smad3CA expression, day 3 of reprogramming Platform: GPL13112 Series: GSE85175 GSE85178 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259218/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1998694 Sample Accession: GSM2259218 ID: 302259218 16276. D3 BFP Rep2 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, absence of Smad3CA expression, day 3 of reprogramming Platform: GPL13112 Series: GSE85175 GSE85178 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259217/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1998693 Sample Accession: GSM2259217 ID: 302259217 16277. D3 BFP Rep1 Organism: Mus musculus Source name: Mouse embryonic fibroblasts, absence of Smad3CA expression, day 3 of reprogramming Platform: GPL13112 Series: GSE85175 GSE85178 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259216/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1998692 Sample Accession: GSM2259216 ID: 302259216 16278. ME_JH_112315_1109-ATACSlice03-04-10whole Organism: Drosophila melanogaster Source name: Stage 5 D.mel embryos Platform: GPL21306 Series: GSE104957 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3282118 Sample Accession: GSM2811121 ID: 302811121 16279. ME_JH_112315_1109-ATACSlice03-03-1plus2 Organism: Drosophila melanogaster Source name: Stage 5 D.mel embryos Platform: GPL21306 Series: GSE104957 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3282117 Sample Accession: GSM2811120 ID: 302811120 16280. ME_JH_112315_1109-ATACSlice03-02-20Post Organism: Drosophila melanogaster Source name: Stage 5 D.mel embryos Platform: GPL21306 Series: GSE104957 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3282116 Sample Accession: GSM2811119 ID: 302811119 16281. ME_JH_112315_1109-ATACSlice03-01-20Ant Organism: Drosophila melanogaster Source name: Stage 5 D.mel embryos Platform: GPL21306 Series: GSE104957 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3282115 Sample Accession: GSM2811118 ID: 302811118 16282. ME_JH_112315_1105-ATACSlice2-7-10whole Organism: Drosophila melanogaster Source name: Stage 5 D.mel embryos Platform: GPL21306 Series: GSE104957 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3282114 Sample Accession: GSM2811117 ID: 302811117 16283. ME_JH_112315_1105-ATACSlice2-02-20p Organism: Drosophila melanogaster Source name: Stage 5 D.mel embryos Platform: GPL21306 Series: GSE104957 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3282113 Sample Accession: GSM2811116 ID: 302811116 16284. ME_JH_112315_1105-ATACSlice2-01-20a Organism: Drosophila melanogaster Source name: Stage 5 D.mel embryos Platform: GPL21306 Series: GSE104957 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3282112 Sample Accession: GSM2811115 ID: 302811115 16285. 12-23-15-No-Dox_S123.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416008 Sample Accession: GSM2424843 ID: 302424843 16286. 12-18-15-No-Dox_S121.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416007 Sample Accession: GSM2424842 ID: 302424842 16287. 12-10-15-NoDox_S117.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416006 Sample Accession: GSM2424841 ID: 302424841 16288. 11-6-15-WT_S113.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416005 Sample Accession: GSM2424840 ID: 302424840 16289. 1-12-16-No-Dox_S126.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416004 Sample Accession: GSM2424839 ID: 302424839 16290. 11-16-15-WT_S115.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416003 Sample Accession: GSM2424838 ID: 302424838 16291. 12-23-15-KO_S125.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416002 Sample Accession: GSM2424837 ID: 302424837 16292. 12-11-15-KO_S120.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416001 Sample Accession: GSM2424836 ID: 302424836 16293. 11-6-15-KO_S114.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2416000 Sample Accession: GSM2424835 ID: 302424835 16294. 11-16-15-KO_S116.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415999 Sample Accession: GSM2424834 ID: 302424834 16295. 10-23-15-KO_S112.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415998 Sample Accession: GSM2424833 ID: 302424833 16296. 12-23-15-Dox_S124.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415997 Sample Accession: GSM2424832 ID: 302424832 16297. 12-18-15-Dox_S122.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415996 Sample Accession: GSM2424831 ID: 302424831 16298. 12-10-15-Dox_S118.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415995 Sample Accession: GSM2424830 ID: 302424830 16299. 1-12-16-Dox_S127.1 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415994 Sample Accession: GSM2424829 ID: 302424829 16300. 7.22.16.No.Dox_S40 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415993 Sample Accession: GSM2424828 ID: 302424828 16301. 12.11.15.WT_S31 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415992 Sample Accession: GSM2424827 ID: 302424827 16302. 10.30.15.WT_S32 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424826/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415991 Sample Accession: GSM2424826 ID: 302424826 16303. 12.18.15.No.Dox_S36 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415990 Sample Accession: GSM2424825 ID: 302424825 16304. 1.12.16.No.Dox_S35 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415989 Sample Accession: GSM2424824 ID: 302424824 16305. 11.16.15.WT_S39 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415988 Sample Accession: GSM2424823 ID: 302424823 16306. 10.23.15.WT_S38 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415987 Sample Accession: GSM2424822 ID: 302424822 16307. 11.16.15.KO_S56 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415986 Sample Accession: GSM2424821 ID: 302424821 16308. 10.23.15.KO_S55 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424820/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415985 Sample Accession: GSM2424820 ID: 302424820 16309. 12.11.15.KO_S33 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415984 Sample Accession: GSM2424819 ID: 302424819 16310. 10.30.15.KO_S34 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424818/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415983 Sample Accession: GSM2424818 ID: 302424818 16311. 7.22.16.DOX_S41 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415982 Sample Accession: GSM2424817 ID: 302424817 16312. 12.18.15.Dox_S38 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415981 Sample Accession: GSM2424816 ID: 302424816 16313. 1.12.16.Dox_S37 Organism: Mus musculus Source name: OT-II, day 3 post immunization Platform: GPL21103 Series: GSE92272 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2424nnn/GSM2424815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2415980 Sample Accession: GSM2424815 ID: 302424815 16314. ATAC_Ring1bflfl_Tam Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98605 GSE105799 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2828nnn/GSM2828359/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3313039 Sample Accession: GSM2828359 ID: 302828359 16315. ATAC_Ring1bflfl_EtOH Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98605 GSE105799 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2828nnn/GSM2828358/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3313038 Sample Accession: GSM2828358 ID: 302828358 16316. ATAC_Smarca4_Y860H Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98486 GSE98605 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2597nnn/GSM2597321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2779466 Sample Accession: GSM2597321 ID: 302597321 16317. ATAC_Smarca4_WT Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98486 GSE98605 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2597nnn/GSM2597320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2779465 Sample Accession: GSM2597320 ID: 302597320 16318. ATAC_Smarca4_R885H Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98486 GSE98605 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2597nnn/GSM2597319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2779464 Sample Accession: GSM2597319 ID: 302597319 16319. ATAC_Smarca4_K785R Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98486 GSE98605 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2597nnn/GSM2597318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2779463 Sample Accession: GSM2597318 ID: 302597318 16320. ATAC_Smarca4_G784E Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98486 GSE98605 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2597nnn/GSM2597317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2779462 Sample Accession: GSM2597317 ID: 302597317 16321. ATAC_Smarca4_E882K Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98486 GSE98605 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2597nnn/GSM2597316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2779461 Sample Accession: GSM2597316 ID: 302597316 16322. ATAC_Smarca4_E861K Organism: Mus musculus Source name: Mouse embryonic stem cells Platform: GPL13112 Series: GSE98486 GSE98605 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2597nnn/GSM2597315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2779460 Sample Accession: GSM2597315 ID: 302597315 16323. ATAC-seq_CR3flp_rep3 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE99479 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871337 Sample Accession: GSM2644566 ID: 302644566 16324. ATAC-seq_CR3flp_rep2 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE99479 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871336 Sample Accession: GSM2644565 ID: 302644565 16325. ATAC-seq_CR3flp_rep1 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE99479 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871335 Sample Accession: GSM2644564 ID: 302644564 16326. ATAC-seq_T47Dflp_rep3 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE99479 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871334 Sample Accession: GSM2644563 ID: 302644563 16327. ATAC-seq_T47Dflp_rep2 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE99479 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871333 Sample Accession: GSM2644562 ID: 302644562 16328. ATAC-seq_T47Dflp_rep1 Organism: Homo sapiens Source name: T47D Platform: GPL18573 Series: GSE99479 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2871332 Sample Accession: GSM2644561 ID: 302644561 16329. HG3 Organism: Mus musculus Source name: AVM cells 25mM Glucose Platform: GPL13112 Series: GSE104520 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2802nnn/GSM2802804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3239412 Sample Accession: GSM2802804 ID: 302802804 16330. HG2 Organism: Mus musculus Source name: AVM cells 25mM Glucose Platform: GPL13112 Series: GSE104520 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2802nnn/GSM2802803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3239411 Sample Accession: GSM2802803 ID: 302802803 16331. HG1 Organism: Mus musculus Source name: AVM cells 25mM Glucose Platform: GPL13112 Series: GSE104520 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2802nnn/GSM2802802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3239410 Sample Accession: GSM2802802 ID: 302802802 16332. NG3 Organism: Mus musculus Source name: AVM cells 5.5mM Glucose Platform: GPL13112 Series: GSE104520 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2802nnn/GSM2802801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3239409 Sample Accession: GSM2802801 ID: 302802801 16333. NG2 Organism: Mus musculus Source name: AVM cells 5.5mM Glucose Platform: GPL13112 Series: GSE104520 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2802nnn/GSM2802800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3239408 Sample Accession: GSM2802800 ID: 302802800 16334. NG1 Organism: Mus musculus Source name: AVM cells 5.5mM Glucose Platform: GPL13112 Series: GSE104520 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2802nnn/GSM2802799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3239407 Sample Accession: GSM2802799 ID: 302802799 16335. TOV21G ATAC-seq-ARID1BKD-Rep2 Organism: Homo sapiens Source name: TOV21G Platform: GPL18573 Series: GSE101974 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3044161 Sample Accession: GSM2719875 ID: 302719875 16336. TOV21G ATAC-seq-ARID1BKD-Rep1 Organism: Homo sapiens Source name: TOV21G Platform: GPL18573 Series: GSE101974 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3044160 Sample Accession: GSM2719874 ID: 302719874 16337. TOV21G ATAC-seq-WT-Rep2 Organism: Homo sapiens Source name: TOV21G Platform: GPL18573 Series: GSE101974 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3044159 Sample Accession: GSM2719873 ID: 302719873 16338. TOV21G ATAC-seq-WT-Rep1 Organism: Homo sapiens Source name: TOV21G Platform: GPL18573 Series: GSE101974 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3044158 Sample Accession: GSM2719872 ID: 302719872 16339. HCT116 ARID1A-/- ATAC-seq-ARID1AKO-ARID1BKD2-Rep2 Organism: Homo sapiens Source name: HCT116 ARID1A-/- Platform: GPL18573 Series: GSE101966 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3043681 Sample Accession: GSM2719731 ID: 302719731 16340. HCT116 ARID1A-/- ATAC-seq-ARID1AKO-ARID1BKD2-Rep1 Organism: Homo sapiens Source name: HCT116 ARID1A-/- Platform: GPL18573 Series: GSE101966 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3043680 Sample Accession: GSM2719730 ID: 302719730 16341. HCT116 ARID1A-/- ATAC-seq-ARID1AKO-Rep2 Organism: Homo sapiens Source name: HCT116 ARID1A-/- Platform: GPL18573 Series: GSE101966 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3043679 Sample Accession: GSM2719729 ID: 302719729 16342. HCT116 ARID1A-/- ATAC-seq-ARID1AKO-Rep1 Organism: Homo sapiens Source name: HCT116 ARID1A-/- Platform: GPL18573 Series: GSE101966 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3043678 Sample Accession: GSM2719728 ID: 302719728 16343. HCT116 ATAC-seq-ARID1BKD-Rep2 Organism: Homo sapiens Source name: HCT116 Platform: GPL18573 Series: GSE101966 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3043677 Sample Accession: GSM2719727 ID: 302719727 16344. HCT116 ATAC-seq-ARID1BKD-Rep1 Organism: Homo sapiens Source name: HCT116 Platform: GPL18573 Series: GSE101966 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3043676 Sample Accession: GSM2719726 ID: 302719726 16345. HCT116 ATAC-seq-WT-Rep2 Organism: Homo sapiens Source name: HCT116 Platform: GPL18573 Series: GSE101966 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719725/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3043675 Sample Accession: GSM2719725 ID: 302719725 16346. HCT116 ATAC-seq-WT-Rep1 Organism: Homo sapiens Source name: HCT116 Platform: GPL18573 Series: GSE101966 GSE101975 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2719nnn/GSM2719724/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3043674 Sample Accession: GSM2719724 ID: 302719724 16347. ATAC_Rif1KD Organism: Mus musculus Source name: mouse ES cell line E14Tg2A Platform: GPL19057 Series: GSE98252 GSE98256 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2589nnn/GSM2589867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2766251 Sample Accession: GSM2589867 ID: 302589867 16348. ATAC_Control Organism: Mus musculus Source name: mouse ES cell line E14Tg2A Platform: GPL19057 Series: GSE98252 GSE98256 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2589nnn/GSM2589866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2766250 Sample Accession: GSM2589866 ID: 302589866 16349. ATAC-seq_tumor_6 Organism: Mus musculus Source name: Tumor6 Platform: GPL21103 Series: GSE90958 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2685nnn/GSM2685767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2958720 Sample Accession: GSM2685767 ID: 302685767 16350. ATAC-seq_tumor_5 Organism: Mus musculus Source name: Tumor5 Platform: GPL21103 Series: GSE90958 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2685nnn/GSM2685766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2958719 Sample Accession: GSM2685766 ID: 302685766 16351. ATAC-seq_tumor_3 Organism: Mus musculus Source name: Tumor3 Platform: GPL21103 Series: GSE90958 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2685nnn/GSM2685765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2958718 Sample Accession: GSM2685765 ID: 302685765 16352. PMA/Iono R3 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384388 Sample Accession: GSM2411167 ID: 302411167 16353. PMA/Iono R2 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384387 Sample Accession: GSM2411166 ID: 302411166 16354. PMA/Iono R1 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384386 Sample Accession: GSM2411165 ID: 302411165 16355. Iono R3 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384385 Sample Accession: GSM2411164 ID: 302411164 16356. Iono R2 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384384 Sample Accession: GSM2411163 ID: 302411163 16357. Iono R1 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384383 Sample Accession: GSM2411162 ID: 302411162 16358. PMA R3 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384382 Sample Accession: GSM2411161 ID: 302411161 16359. PMA R2 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384381 Sample Accession: GSM2411160 ID: 302411160 16360. PMA R1 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384380 Sample Accession: GSM2411159 ID: 302411159 16361. Untreated R3 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384379 Sample Accession: GSM2411158 ID: 302411158 16362. Untreated R2 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384378 Sample Accession: GSM2411157 ID: 302411157 16363. Untreated R1 ATAC-seq Organism: Homo sapiens Source name: Jurkat T cells Platform: GPL16791 Series: GSE90718 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2384377 Sample Accession: GSM2411156 ID: 302411156 16364. 15110403-tub-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (high) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165328 Sample Accession: GSM2311225 ID: 302311225 16365. 15110402-tub-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (high) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165327 Sample Accession: GSM2311224 ID: 302311224 16366. 15110401-tub-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (high) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165326 Sample Accession: GSM2311223 ID: 302311223 16367. 15110304-tub-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (high) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165325 Sample Accession: GSM2311222 ID: 302311222 16368. 15110303-tub-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (high) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165324 Sample Accession: GSM2311221 ID: 302311221 16369. 15110302-tub-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (high) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165323 Sample Accession: GSM2311220 ID: 302311220 16370. 16060606-mtrm-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (medium) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165322 Sample Accession: GSM2311219 ID: 302311219 16371. 16060605-mtrm-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (medium) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165321 Sample Accession: GSM2311218 ID: 302311218 16372. 16060604-mtrm-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (medium) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165320 Sample Accession: GSM2311217 ID: 302311217 16373. 16060603-mtrm-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (medium) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165319 Sample Accession: GSM2311216 ID: 302311216 16374. 16060602-mtrm-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (medium) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165318 Sample Accession: GSM2311215 ID: 302311215 16375. 16060601-mtrm-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (medium) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165317 Sample Accession: GSM2311214 ID: 302311214 16376. 16051006-bcd-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (low) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165316 Sample Accession: GSM2311213 ID: 302311213 16377. 16051005-bcd-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (low) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165315 Sample Accession: GSM2311212 ID: 302311212 16378. 16051004-bcd-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (low) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165314 Sample Accession: GSM2311211 ID: 302311211 16379. 16050903-bcd-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (low) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165313 Sample Accession: GSM2311210 ID: 302311210 16380. 16050902-bcd-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (low) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165312 Sample Accession: GSM2311209 ID: 302311209 16381. 16050901-bcd-uBcd-NC14-12 Organism: Drosophila melanogaster Source name: uniform Bcd (low) ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165311 Sample Accession: GSM2311208 ID: 302311208 16382. 16033008-zld-NC14-12 Organism: Drosophila melanogaster Source name: zelda germline clone ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165310 Sample Accession: GSM2311207 ID: 302311207 16383. 16033007-zld-NC14-12 Organism: Drosophila melanogaster Source name: zelda germline clone ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165309 Sample Accession: GSM2311206 ID: 302311206 16384. 16032904-zld-NC14-12 Organism: Drosophila melanogaster Source name: zelda germline clone ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165308 Sample Accession: GSM2311205 ID: 302311205 16385. 16032803-zld-NC14-12 Organism: Drosophila melanogaster Source name: zelda germline clone ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165307 Sample Accession: GSM2311204 ID: 302311204 16386. 16032802-zld-NC14-12 Organism: Drosophila melanogaster Source name: zelda germline clone ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165306 Sample Accession: GSM2311203 ID: 302311203 16387. 16032801-zld-NC14-12 Organism: Drosophila melanogaster Source name: zelda germline clone ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165305 Sample Accession: GSM2311202 ID: 302311202 16388. 15072902--bnt-F-NC14-12 Organism: Drosophila melanogaster Source name: bcd nanos torsolike ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165304 Sample Accession: GSM2311201 ID: 302311201 16389. 15072901--bnt-E-NC14-12 Organism: Drosophila melanogaster Source name: bcd nanos torsolike ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165303 Sample Accession: GSM2311200 ID: 302311200 16390. 15072801--bnt-D-NC14-12 Organism: Drosophila melanogaster Source name: bcd nanos torsolike ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165302 Sample Accession: GSM2311199 ID: 302311199 16391. 15072603--bnt-C-NC14-12 Organism: Drosophila melanogaster Source name: bcd nanos torsolike ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165301 Sample Accession: GSM2311198 ID: 302311198 16392. 15072602--bnt-B-NC14-12 Organism: Drosophila melanogaster Source name: bcd nanos torsolike ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165300 Sample Accession: GSM2311197 ID: 302311197 16393. 15072601--bnt-A-NC14-12 Organism: Drosophila melanogaster Source name: bcd nanos torsolike ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165299 Sample Accession: GSM2311196 ID: 302311196 16394. 15110301-bcdE1-NC14-12 Organism: Drosophila melanogaster Source name: bcd mutant ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165298 Sample Accession: GSM2311195 ID: 302311195 16395. 15110202-bcdE1-NC14-12 Organism: Drosophila melanogaster Source name: bcd mutant ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165297 Sample Accession: GSM2311194 ID: 302311194 16396. 15110201-bcdE1-NC14-12 Organism: Drosophila melanogaster Source name: bcd mutant ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165296 Sample Accession: GSM2311193 ID: 302311193 16397. 15110102-bcdE1-NC14-12 Organism: Drosophila melanogaster Source name: bcd mutant ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165295 Sample Accession: GSM2311192 ID: 302311192 16398. 15110101-bcdE1-NC14-12 Organism: Drosophila melanogaster Source name: bcd mutant ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165294 Sample Accession: GSM2311191 ID: 302311191 16399. 15073002--WT-F-NC14-12 Organism: Drosophila melanogaster Source name: wild type ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165293 Sample Accession: GSM2311190 ID: 302311190 16400. 15073001--WT-E-NC14-12 Organism: Drosophila melanogaster Source name: wild type ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165292 Sample Accession: GSM2311189 ID: 302311189 16401. 15072704--WT-D-NC14-12 Organism: Drosophila melanogaster Source name: wild type ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165291 Sample Accession: GSM2311188 ID: 302311188 16402. 15072703--WT-C-NC14-12 Organism: Drosophila melanogaster Source name: wild type ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165290 Sample Accession: GSM2311187 ID: 302311187 16403. 15072702--WT-B-NC14-12 Organism: Drosophila melanogaster Source name: wild type ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165289 Sample Accession: GSM2311186 ID: 302311186 16404. 15072701--WT-A-NC14-12 Organism: Drosophila melanogaster Source name: wild type ATAC-seq Platform: GPL17275 Series: GSE86966 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2165288 Sample Accession: GSM2311185 ID: 302311185 16405. 31-RBL-Donor-1-WT-D7 Organism: Homo sapiens Source name: Primary B cells infected with EBV Platform: GPL18573 Series: GSE101426 FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2702nnn/GSM2702719/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3003810 Sample Accession: GSM2702719 ID: 302702719 16406. 30-RBL-Donor-1-WT-D5 Organism: Homo sapiens Source name: Primary B cells infected with EBV Platform: GPL18573 Series: GSE101426 FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2702nnn/GSM2702718/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3003809 Sample Accession: GSM2702718 ID: 302702718 16407. 29-RBL-Donor-1-WT-D2 Organism: Homo sapiens Source name: Primary B cells infected with EBV Platform: GPL18573 Series: GSE101426 FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2702nnn/GSM2702717/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3003808 Sample Accession: GSM2702717 ID: 302702717 16408. 28-RBL-Donor-1-WT-D1 Organism: Homo sapiens Source name: Primary B cells infected with EBV Platform: GPL18573 Series: GSE101426 FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2702nnn/GSM2702716/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3003807 Sample Accession: GSM2702716 ID: 302702716 16409. 27-RBL-Donor-1-P3-D5 Organism: Homo sapiens Source name: Primary B cells infected with EBV Platform: GPL18573 Series: GSE101426 FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2702nnn/GSM2702715/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3003806 Sample Accession: GSM2702715 ID: 302702715 16410. 26-RBL-Donor-1-P3-D2 Organism: Homo sapiens Source name: Primary B cells infected with EBV Platform: GPL18573 Series: GSE101426 FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2702nnn/GSM2702714/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3003805 Sample Accession: GSM2702714 ID: 302702714 16411. 25-RBL-Donor-1-P3-D1 Organism: Homo sapiens Source name: Primary B cells infected with EBV Platform: GPL18573 Series: GSE101426 FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2702nnn/GSM2702713/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3003804 Sample Accession: GSM2702713 ID: 302702713 16412. 24-RBL-Donor-1-D0 Organism: Homo sapiens Source name: Primary B cells Platform: GPL18573 Series: GSE101426 FTP download: GEO (BAM, TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2702nnn/GSM2702712/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3003803 Sample Accession: GSM2702712 ID: 302702712 16413. ATAC-seq_EB-KH2_rep4 Organism: Mus musculus Source name: Mouse KH2 cells Platform: GPL19057 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987822 Sample Accession: GSM2695573 ID: 302695573 16414. ATAC-seq_EB-KH2_rep3 Organism: Mus musculus Source name: Mouse KH2 cells Platform: GPL19057 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987821 Sample Accession: GSM2695572 ID: 302695572 16415. ATAC-seq_EB-KH2_rep2 Organism: Mus musculus Source name: Mouse KH2 cells Platform: GPL19057 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987820 Sample Accession: GSM2695571 ID: 302695571 16416. ATAC-seq_EB-KH2_rep1 Organism: Mus musculus Source name: Mouse KH2 cells Platform: GPL19057 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987819 Sample Accession: GSM2695570 ID: 302695570 16417. ATAC-seq_ESC-KH2_rep4 Organism: Mus musculus Source name: Mouse KH2 cells Platform: GPL19057 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987818 Sample Accession: GSM2695569 ID: 302695569 16418. ATAC-seq_ESC-KH2_rep3 Organism: Mus musculus Source name: Mouse KH2 cells Platform: GPL19057 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987817 Sample Accession: GSM2695568 ID: 302695568 16419. ATAC-seq_ESC-KH2_rep2 Organism: Mus musculus Source name: Mouse KH2 cells Platform: GPL19057 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987816 Sample Accession: GSM2695567 ID: 302695567 16420. ATAC-seq_ESC-KH2_rep1 Organism: Mus musculus Source name: Mouse KH2 cells Platform: GPL19057 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987815 Sample Accession: GSM2695566 ID: 302695566 16421. ATAC-seq_K562_HBD-1kb_KO-rep3 Organism: Homo sapiens Source name: Human K562 cells Platform: GPL18573 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987814 Sample Accession: GSM2695565 ID: 302695565 16422. ATAC-seq_K562_HBD-1kb_KO-rep2 Organism: Homo sapiens Source name: Human K562 cells Platform: GPL18573 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987813 Sample Accession: GSM2695564 ID: 302695564 16423. ATAC-seq_K562_HBD-1kb_KO-rep1 Organism: Homo sapiens Source name: Human K562 cells Platform: GPL18573 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987812 Sample Accession: GSM2695563 ID: 302695563 16424. ATAC-seq_K562_Control-rep3 Organism: Homo sapiens Source name: Human K562 cells Platform: GPL18573 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987811 Sample Accession: GSM2695562 ID: 302695562 16425. ATAC-seq_K562_Control-rep2 Organism: Homo sapiens Source name: Human K562 cells Platform: GPL18573 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987810 Sample Accession: GSM2695561 ID: 302695561 16426. ATAC-seq_K562_Control-rep1 Organism: Homo sapiens Source name: Human K562 cells Platform: GPL18573 Series: GSE88817 GSE99173 FTP download: GEO (BED, WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2695nnn/GSM2695560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2987809 Sample Accession: GSM2695560 ID: 302695560 16427. ATAC-seq in MSCs infected with wild-type FLI1 (rep1) Organism: Homo sapiens Source name: MSC1 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472049/ Sample Accession: GSM2472049 ID: 302472049 16428. ATAC-seq in MSCs infected with EWSFLI1 (rep1) Organism: Homo sapiens Source name: MSC1 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472048/ Sample Accession: GSM2472048 ID: 302472048 16429. ATAC-seq in MSCs infected with control (rep1) Organism: Homo sapiens Source name: MSC1 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472047/ Sample Accession: GSM2472047 ID: 302472047 16430. ATAC-seq in MSCs infected with BAF47FLI1 (rep1) Organism: Homo sapiens Source name: MSC1 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472046/ Sample Accession: GSM2472046 ID: 302472046 16431. ATAC-seq in MSCs infected with control (rep4) Organism: Homo sapiens Source name: MSC4 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472045/ Sample Accession: GSM2472045 ID: 302472045 16432. ATAC-seq in MSCs infected with EWS(YS37)-FLI1 (rep2) Organism: Homo sapiens Source name: MSC2 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472044/ Sample Accession: GSM2472044 ID: 302472044 16433. ATAC-seq in MSCs infected with EWSFLI1 (rep4) Organism: Homo sapiens Source name: MSC4 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472043/ Sample Accession: GSM2472043 ID: 302472043 16434. ATAC-seq in MSCs infected with EWSFLI1 (rep2) Organism: Homo sapiens Source name: MSC2 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472042/ Sample Accession: GSM2472042 ID: 302472042 16435. ATAC-seq in MSCs infected with control (rep2) Organism: Homo sapiens Source name: MSC2 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472041/ Sample Accession: GSM2472041 ID: 302472041 16436. ATAC-seq in MSCs infected with BAF47FLI1 (rep4) Organism: Homo sapiens Source name: MSC4 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472040/ Sample Accession: GSM2472040 ID: 302472040 16437. ATAC-seq in MSCs infected with control (rep3) Organism: Homo sapiens Source name: MSC3 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472039/ Sample Accession: GSM2472039 ID: 302472039 16438. ATAC-seq in MSCs infected with SYGQ2-FLI1 (rep3) Organism: Homo sapiens Source name: MSC3 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472038/ Sample Accession: GSM2472038 ID: 302472038 16439. ATAC-seq in MSCs infected with EWSFLI1 (rep3) Organism: Homo sapiens Source name: MSC3 Platform: GPL18573 Series: GSE94272 GSE94278 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2472nnn/GSM2472037/ Sample Accession: GSM2472037 ID: 302472037 16440. ATAC T+ WT TS13 Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of WT embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454135/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485342 Sample Accession: GSM2454135 ID: 302454135 16441. ATAC T+ WT TS12 Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of WT embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454134/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485341 Sample Accession: GSM2454134 ID: 302454134 16442. ATAC T+ S+ WT TS13 Organism: Mus musculus Source name: T+ / Sox2+ FACS sorted cells from caudal ends of WT embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454133/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485340 Sample Accession: GSM2454133 ID: 302454133 16443. ATAC T+ S+ WT TS12 Organism: Mus musculus Source name: T+ / Sox2+ FACS sorted cells from caudal ends of WT embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454132/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485339 Sample Accession: GSM2454132 ID: 302454132 16444. ATAC T+ S+ KO TS13 Organism: Mus musculus Source name: T+ / Sox2+ FACS sorted cells from caudal ends of T2J/2J embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454131/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485338 Sample Accession: GSM2454131 ID: 302454131 16445. ATAC T+ S+ KO TS12 Organism: Mus musculus Source name: T+ / Sox2+ FACS sorted cells from caudal ends of T2J/2J embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454130/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485337 Sample Accession: GSM2454130 ID: 302454130 16446. ATAC T+ KO TS13 Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of T2J/2J embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454129/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485336 Sample Accession: GSM2454129 ID: 302454129 16447. ATAC T+ KO TS12 Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of T2J/2J embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454128/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485335 Sample Accession: GSM2454128 ID: 302454128 16448. ATAC S+ WT TS13 Organism: Mus musculus Source name: Sox2+ FACS sorted cells from caudal ends of WT embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454127/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485334 Sample Accession: GSM2454127 ID: 302454127 16449. ATAC S+ WT TS12 Organism: Mus musculus Source name: Sox2+ FACS sorted cells from caudal ends of WT embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454126/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485333 Sample Accession: GSM2454126 ID: 302454126 16450. ATAC S+ KO TS13 Organism: Mus musculus Source name: Sox2+ FACS sorted cells from caudal ends of T2J/2J embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454125/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485332 Sample Accession: GSM2454125 ID: 302454125 16451. ATAC S+ KO TS12 Organism: Mus musculus Source name: Sox2+ FACS sorted cells from caudal ends of T2J/2J embryos Platform: GPL19057 Series: GSE93524 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2454nnn/GSM2454124/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485331 Sample Accession: GSM2454124 ID: 302454124 16452. RNA Tbx6+ WT TS14 Organism: Mus musculus Source name: Tbx6+ FACS sorted cells from caudal ends of Tbx6-/- embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485355 Sample Accession: GSM2454148 ID: 302454148 16453. RNA Tbx6+ KO TS14 Organism: Mus musculus Source name: Tbx6+ FACS sorted cells from caudal ends of WT embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485354 Sample Accession: GSM2454147 ID: 302454147 16454. RNA T+ WT TS13 Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of WT embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485353 Sample Accession: GSM2454146 ID: 302454146 16455. RNA T+ WT TS12 Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of WT embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485352 Sample Accession: GSM2454145 ID: 302454145 16456. RNA T+ KO TS13 Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of T2J/2J embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485351 Sample Accession: GSM2454144 ID: 302454144 16457. RNA T+ KO TS12 Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of T2J/2J embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485350 Sample Accession: GSM2454143 ID: 302454143 16458. RNA NMP T+ S+ Organism: Mus musculus Source name: T+ / Sox2+ FACS sorted cells from caudal ends of WT embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485349 Sample Accession: GSM2454142 ID: 302454142 16459. RNA NMP T+ Organism: Mus musculus Source name: T+ FACS sorted cells from caudal ends of WT embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485348 Sample Accession: GSM2454141 ID: 302454141 16460. RNA NMP S+ Organism: Mus musculus Source name: Sox2+ FACS sorted cells from caudal ends of WT embryos Platform: GPL13112 Series: GSE93524 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2485347 Sample Accession: GSM2454140 ID: 302454140 16461. Triptolide_ATACseq Organism: Drosophila melanogaster Source name: Kc167 Platform: GPL13304 Series: GSE89244 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2583nnn/GSM2583728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2745540 Sample Accession: GSM2583728 ID: 302583728 16462. DMSO_ATACseq Organism: Drosophila melanogaster Source name: Kc167 Platform: GPL13304 Series: GSE89244 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2583nnn/GSM2583727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2745539 Sample Accession: GSM2583727 ID: 302583727 16463. RDsh_Dox ATAC-seq Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE100762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980269 Sample Accession: GSM2692633 ID: 302692633 16464. RDsh ATAC-seq Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE100762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980268 Sample Accession: GSM2692632 ID: 302692632 16465. multiH1sh_Dox_2 ATAC-seq Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE100762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980267 Sample Accession: GSM2692631 ID: 302692631 16466. multiH1sh_Dox_1 ATAC-seq Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE100762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980266 Sample Accession: GSM2692630 ID: 302692630 16467. multiH1sh_2 ATAC-seq Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE100762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980265 Sample Accession: GSM2692629 ID: 302692629 16468. multiH1sh_1 ATAC-seq Organism: Homo sapiens Source name: Breast cancer cell line Platform: GPL16791 Series: GSE100762 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980264 Sample Accession: GSM2692628 ID: 302692628 16469. ATAC-seq_brown_adipocytes_day0_rep1 Organism: Mus musculus Source name: immortalized brown adipocytes Platform: GPL17021 Series: GSE83757 GSE83764 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2546nnn/GSM2546549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2663103 Sample Accession: GSM2546549 ID: 302546549 16470. ATAC-seq_brown_adipocytes_day6_rep2 Organism: Mus musculus Source name: immortalized brown adipocytes Platform: GPL17021 Series: GSE83757 GSE83764 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1879663 Sample Accession: GSM2218589 ID: 302218589 16471. ATAC-seq_brown_adipocytes_day6_rep1 Organism: Mus musculus Source name: immortalized brown adipocytes Platform: GPL17021 Series: GSE83757 GSE83764 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1879662 Sample Accession: GSM2218588 ID: 302218588 16472. Normoxia Blimp1 KD ATAC-seq rep2 Organism: Mus musculus Source name: Normoxia Blimp1 KD Platform: GPL19057 Series: GSE90825 GSE90918 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2396719 Sample Accession: GSM2417506 ID: 302417506 16473. Normoxia Blimp1 KD ATAC-seq rep1 Organism: Mus musculus Source name: Normoxia Blimp1 KD Platform: GPL19057 Series: GSE90825 GSE90918 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2396718 Sample Accession: GSM2417505 ID: 302417505 16474. Normoxia control KD ATAC-seq rep2 Organism: Mus musculus Source name: Normoxia control KD Platform: GPL19057 Series: GSE90825 GSE90918 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2396717 Sample Accession: GSM2417504 ID: 302417504 16475. Normoxia control KD ATAC-seq rep1 Organism: Mus musculus Source name: Normoxia control KD Platform: GPL19057 Series: GSE90825 GSE90918 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2396716 Sample Accession: GSM2417503 ID: 302417503 16476. Hypoxia Blimp1 KD ATAC-seq rep2 Organism: Mus musculus Source name: Hypoxia Blimp1 KD Platform: GPL19057 Series: GSE90825 GSE90918 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2396715 Sample Accession: GSM2417502 ID: 302417502 16477. Hypoxia Blimp1 KD ATAC-seq rep1 Organism: Mus musculus Source name: Hypoxia Blimp1 KD Platform: GPL19057 Series: GSE90825 GSE90918 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2396714 Sample Accession: GSM2417501 ID: 302417501 16478. Hypoxia control KD ATAC-seq rep2 Organism: Mus musculus Source name: Hypoxia control KD Platform: GPL19057 Series: GSE90825 GSE90918 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2396713 Sample Accession: GSM2417500 ID: 302417500 16479. Hypoxia control KD ATAC-seq rep1 Organism: Mus musculus Source name: Hypoxia control KD Platform: GPL19057 Series: GSE90825 GSE90918 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2396712 Sample Accession: GSM2417499 ID: 302417499 16480. M10P ATAC-Seq Organism: Mus musculus Source name: M10P organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640278/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852943 Sample Accession: GSM2640278 ID: 302640278 16481. M3P ATAC-Seq Organism: Mus musculus Source name: M3P organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640277/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852942 Sample Accession: GSM2640277 ID: 302640277 16482. M1L ATAC-Seq Organism: Mus musculus Source name: M1L organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640276/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852941 Sample Accession: GSM2640276 ID: 302640276 16483. T23 ATAC-Seq Organism: Mus musculus Source name: T23 organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852940 Sample Accession: GSM2640275 ID: 302640275 16484. T6 ATAC-Seq Organism: Mus musculus Source name: T6 organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852939 Sample Accession: GSM2640274 ID: 302640274 16485. T3 ATAC-Seq Organism: Mus musculus Source name: T3 organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852938 Sample Accession: GSM2640273 ID: 302640273 16486. P3 ATAC-Seq Organism: Mus musculus Source name: P3 organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852937 Sample Accession: GSM2640272 ID: 302640272 16487. P2 ATAC-Seq Organism: Mus musculus Source name: P2 organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852936 Sample Accession: GSM2640271 ID: 302640271 16488. N6 ATAC-Seq Organism: Mus musculus Source name: N6 organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852935 Sample Accession: GSM2640270 ID: 302640270 16489. N5 ATAC-Seq Organism: Mus musculus Source name: N5 organoid Platform: GPL19057 Series: GSE99275 GSE99311 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2640nnn/GSM2640269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2852934 Sample Accession: GSM2640269 ID: 302640269 16490. input control Organism: Caenorhabditis elegans Source name: whole organisms Platform: GPL13657 Series: GSE89608 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2333004 Sample Accession: GSM2385318 ID: 302385318 16491. ATAC-seq of Mus musculus : Mbd3-null DN3b thymocytes Organism: Mus musculus Source name: Thymus Platform: GPL17021 Series: GSE101729 GSE101735 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714149/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025778 Sample Accession: GSM2714149 ID: 302714149 16492. ATAC-seq of Mus musculus : Mbd3-floxed DN3b thymocytes Organism: Mus musculus Source name: Thymus Platform: GPL17021 Series: GSE101729 GSE101735 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714148/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025777 Sample Accession: GSM2714148 ID: 302714148 16493. ATAC-seq of Mus musculus : Mbd3-null pro-B cells Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE101729 GSE101735 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714147/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025776 Sample Accession: GSM2714147 ID: 302714147 16494. ATAC-seq of Mus musculus : Mbd3-floxed pro-B cells Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE101729 GSE101735 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714146/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025775 Sample Accession: GSM2714146 ID: 302714146 16495. ATAC-seq of Mus musculus : Mbd3-null B-biased progenitor cells (BLP) Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE101729 GSE101735 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714145/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025774 Sample Accession: GSM2714145 ID: 302714145 16496. ATAC-seq of Mus musculus : Mbd3-floxed B-biased progenitor cells (BLP) Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE101729 GSE101735 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714144/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025773 Sample Accession: GSM2714144 ID: 302714144 16497. ATAC-seq of Mus musculus : Mbd3-null all-lymphoid progenitor cells (ALP) Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE101729 GSE101735 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714143/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025772 Sample Accession: GSM2714143 ID: 302714143 16498. ATAC-seq of Mus musculus : Mbd3-floxed all-lymphoid progenitor cells (ALP) Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE101729 GSE101735 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2714nnn/GSM2714142/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX3025771 Sample Accession: GSM2714142 ID: 302714142 16499. G797 ATAC-seq Organism: Homo sapiens Source name: G797 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533067/ Sample Accession: GSM2533067 ID: 302533067 16500. G729 ATAC-seq Organism: Homo sapiens Source name: G729 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533066/ Sample Accession: GSM2533066 ID: 302533066 16501. G705 ATAC-seq Organism: Homo sapiens Source name: G705 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533065/ Sample Accession: GSM2533065 ID: 302533065 16502. G702 ATAC-seq Organism: Homo sapiens Source name: G702 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533064/ Sample Accession: GSM2533064 ID: 302533064 16503. G571 ATAC-seq Organism: Homo sapiens Source name: G571 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533063/ Sample Accession: GSM2533063 ID: 302533063 16504. G411 ATAC-seq Organism: Homo sapiens Source name: G411 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533062/ Sample Accession: GSM2533062 ID: 302533062 16505. G799 ATAC-seq Organism: Homo sapiens Source name: G799 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533061/ Sample Accession: GSM2533061 ID: 302533061 16506. G754 ATAC-seq Organism: Homo sapiens Source name: G754 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533060/ Sample Accession: GSM2533060 ID: 302533060 16507. G719 ATAC-seq Organism: Homo sapiens Source name: G719 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533059/ Sample Accession: GSM2533059 ID: 302533059 16508. G549 ATAC-seq Organism: Homo sapiens Source name: G549 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533058/ Sample Accession: GSM2533058 ID: 302533058 16509. G489 ATAC-seq Organism: Homo sapiens Source name: G489 Platform: GPL11154 Series: GSE96088 FTP download: GEO (BEDGRAPH, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2533nnn/GSM2533057/ Sample Accession: GSM2533057 ID: 302533057 16510. 6c: ALDH_High_Erl_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980141 Sample Accession: GSM2692576 ID: 302692576 16511. 6b: ALDH_High_Erl_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980140 Sample Accession: GSM2692575 ID: 302692575 16512. 6a: ALDH_High_Erl_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980139 Sample Accession: GSM2692574 ID: 302692574 16513. 5c: ALDH_Low_Erl_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980138 Sample Accession: GSM2692573 ID: 302692573 16514. 5b: ALDH_Low_Erl_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980137 Sample Accession: GSM2692572 ID: 302692572 16515. 5a: ALDH_Low_Erl_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980136 Sample Accession: GSM2692571 ID: 302692571 16516. 4c: ALDH_High_DMSO_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980135 Sample Accession: GSM2692570 ID: 302692570 16517. 4b: ALDH_High_DMSO_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980134 Sample Accession: GSM2692569 ID: 302692569 16518. 4a: ALDH_High_DMSO_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980133 Sample Accession: GSM2692568 ID: 302692568 16519. 3c: ALDH_Low_DMSO_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980132 Sample Accession: GSM2692567 ID: 302692567 16520. 3b: ALDH_Low_DMSO_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980131 Sample Accession: GSM2692566 ID: 302692566 16521. 3a: ALDH_Low_DMSO_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980130 Sample Accession: GSM2692565 ID: 302692565 16522. 2c: DTP_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980129 Sample Accession: GSM2692564 ID: 302692564 16523. 2b: DTP_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980128 Sample Accession: GSM2692563 ID: 302692563 16524. 2a: DTP_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692562/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980127 Sample Accession: GSM2692562 ID: 302692562 16525. 1c: PC9_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980126 Sample Accession: GSM2692561 ID: 302692561 16526. 1b: PC9_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980125 Sample Accession: GSM2692560 ID: 302692560 16527. 1a: PC9_OCSA ATAC-seq Organism: Homo sapiens Source name: NSCLC Platform: GPL18573 Series: GSE74180 GSE100750 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2692nnn/GSM2692559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2980124 Sample Accession: GSM2692559 ID: 302692559 16528. ATAC-seq Control KO BM ckit+ Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE84364 GSE84365 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2232nnn/GSM2232735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1942892 Sample Accession: GSM2232735 ID: 302232735 16529. ATAC-seq ASXL2 KO BM ckit+ Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE84364 GSE84365 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2232nnn/GSM2232734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1942891 Sample Accession: GSM2232734 ID: 302232734 16530. ATAC Seq Ckit Mice cells AE9a ASXL2Ko (413) Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE84364 GSE84365 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2232nnn/GSM2232733/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1942890 Sample Accession: GSM2232733 ID: 302232733 16531. ATAC Seq Ckit Mice cells AE9a ASXL2Ko (412) Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE84364 GSE84365 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2232nnn/GSM2232732/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1942889 Sample Accession: GSM2232732 ID: 302232732 16532. ATAC Seq Ckit Mice cells AE9a #402 Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE84364 GSE84365 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2232nnn/GSM2232731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1942888 Sample Accession: GSM2232731 ID: 302232731 16533. ATAC Seq Ckit Mice cells AE9a #401 Organism: Mus musculus Source name: Bone marrow Platform: GPL17021 Series: GSE84364 GSE84365 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2232nnn/GSM2232730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1942887 Sample Accession: GSM2232730 ID: 302232730 16534. ATAC_SLE_L_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947646 Sample Accession: GSM2679904 ID: 302679904 16535. ATAC_SLE_L_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947645 Sample Accession: GSM2679903 ID: 302679903 16536. ATAC_SLE_L_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947644 Sample Accession: GSM2679902 ID: 302679902 16537. ATAC_SLE_N_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947643 Sample Accession: GSM2679901 ID: 302679901 16538. ATAC_SLE_N_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947642 Sample Accession: GSM2679900 ID: 302679900 16539. ATAC_SLE_N_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947641 Sample Accession: GSM2679899 ID: 302679899 16540. ATAC_Monocytes_L_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947640 Sample Accession: GSM2679898 ID: 302679898 16541. ATAC_Monocytes_L_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947639 Sample Accession: GSM2679897 ID: 302679897 16542. ATAC_Monocytes_L_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947638 Sample Accession: GSM2679896 ID: 302679896 16543. ATAC_Monocytes_N_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947637 Sample Accession: GSM2679895 ID: 302679895 16544. ATAC_Monocytes_N_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947636 Sample Accession: GSM2679894 ID: 302679894 16545. ATAC_Monocytes_N_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947635 Sample Accession: GSM2679893 ID: 302679893 16546. ATAC_IFN_TL_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947634 Sample Accession: GSM2679892 ID: 302679892 16547. ATAC_IFN_TL_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947633 Sample Accession: GSM2679891 ID: 302679891 16548. ATAC_IFN_TL_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947632 Sample Accession: GSM2679890 ID: 302679890 16549. ATAC_IFN_T_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947631 Sample Accession: GSM2679889 ID: 302679889 16550. ATAC_IFN_T_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679888/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947630 Sample Accession: GSM2679888 ID: 302679888 16551. ATAC_IFN_T_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947629 Sample Accession: GSM2679887 ID: 302679887 16552. ATAC_IFN_L_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679886/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947628 Sample Accession: GSM2679886 ID: 302679886 16553. ATAC_IFN_L_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947627 Sample Accession: GSM2679885 ID: 302679885 16554. ATAC_IFN_L_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947626 Sample Accession: GSM2679884 ID: 302679884 16555. ATAC_IFN_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947625 Sample Accession: GSM2679883 ID: 302679883 16556. ATAC_IFN_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947624 Sample Accession: GSM2679882 ID: 302679882 16557. ATAC_IFN_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947623 Sample Accession: GSM2679881 ID: 302679881 16558. ATAC_TL_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947622 Sample Accession: GSM2679880 ID: 302679880 16559. ATAC_TL_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947621 Sample Accession: GSM2679879 ID: 302679879 16560. ATAC_TL_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947620 Sample Accession: GSM2679878 ID: 302679878 16561. ATAC_T_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947619 Sample Accession: GSM2679877 ID: 302679877 16562. ATAC_T_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947618 Sample Accession: GSM2679876 ID: 302679876 16563. ATAC_T_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947617 Sample Accession: GSM2679875 ID: 302679875 16564. ATAC_L_rep5 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947616 Sample Accession: GSM2679874 ID: 302679874 16565. ATAC_L_rep4 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947615 Sample Accession: GSM2679873 ID: 302679873 16566. ATAC_L_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947614 Sample Accession: GSM2679872 ID: 302679872 16567. ATAC_L_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947613 Sample Accession: GSM2679871 ID: 302679871 16568. ATAC_L_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947612 Sample Accession: GSM2679870 ID: 302679870 16569. ATAC_N_rep5 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947611 Sample Accession: GSM2679869 ID: 302679869 16570. ATAC_N_rep4 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947610 Sample Accession: GSM2679868 ID: 302679868 16571. ATAC_N_rep3 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947609 Sample Accession: GSM2679867 ID: 302679867 16572. ATAC_N_rep2 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947608 Sample Accession: GSM2679866 ID: 302679866 16573. ATAC_N_rep1 Organism: Homo sapiens Source name: Primary human monocyte-derived macrophages Platform: GPL11154 Series: GSE100380 GSE100383 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2679nnn/GSM2679865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2947607 Sample Accession: GSM2679865 ID: 302679865 16574. NSF_ATAC-seq Organism: Heterocephalus glaber Source name: Naked mole rate fibroblast Platform: GPL21195 Series: GSE83585 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2210nnn/GSM2210119/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1868882 Sample Accession: GSM2210119 ID: 302210119 16575. NSF_LT_ATAC-seq Organism: Heterocephalus glaber Source name: Naked mole rate fibroblast Platform: GPL21195 Series: GSE83585 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2210nnn/GSM2210118/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1868881 Sample Accession: GSM2210118 ID: 302210118 16576. MSF_ATAC-seq Organism: Mus musculus Source name: Mouse fibroblast Platform: GPL17021 Series: GSE83585 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2210nnn/GSM2210117/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1868880 Sample Accession: GSM2210117 ID: 302210117 16577. MSF_LT_ATAC-seq Organism: Mus musculus Source name: Mouse fibroblast Platform: GPL17021 Series: GSE83585 FTP download: GEO (BED, BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2210nnn/GSM2210116/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1868879 Sample Accession: GSM2210116 ID: 302210116 16578. Mouse D39 mutant erythroid cells ATAC-seq biological replicate 2 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL19057 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579380/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741744 Sample Accession: GSM2579380 ID: 302579380 16579. Mouse D39 mutant erythroid cells ATAC-seq biological replicate 1 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL19057 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579379/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741743 Sample Accession: GSM2579379 ID: 302579379 16580. Mouse D3839 mutant erythroid cells ATAC-seq biological replicate 2 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL19057 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579376/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741740 Sample Accession: GSM2579376 ID: 302579376 16581. Mouse D3839 mutant erythroid cells ATAC-seq biological replicate 1 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL19057 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579375/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741739 Sample Accession: GSM2579375 ID: 302579375 16582. Mouse D29 mutant erythroid cells ATAC-seq biological replicate 2 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL19057 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579374/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741738 Sample Accession: GSM2579374 ID: 302579374 16583. Mouse D29 mutant erythroid cells ATAC-seq biological replicate 1 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL19057 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579373/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741737 Sample Accession: GSM2579373 ID: 302579373 16584. Mouse wild-type erythroid cells ATAC-seq biological replicate 2 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL16417 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579382/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741746 Sample Accession: GSM2579382 ID: 302579382 16585. Mouse wild-type erythroid cells ATAC-seq biological replicate 1 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL16417 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579381/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741745 Sample Accession: GSM2579381 ID: 302579381 16586. Mouse D38 mutant erythroid cells ATAC-seq biological replicate 2 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL16417 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579378/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741742 Sample Accession: GSM2579378 ID: 302579378 16587. Mouse D38 mutant erythroid cells ATAC-seq biological replicate 1 Organism: Mus musculus Source name: Ter119+ Erythroid cells Platform: GPL16417 Series: GSE97866 GSE97871 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2579nnn/GSM2579377/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2741741 Sample Accession: GSM2579377 ID: 302579377 16588. HAEC.ChIP.JUN.oxpapc.4h Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734394 Sample Accession: GSM2576178 ID: 302576178 16589. HAEC.ChIP.JUN.IL1b.4h Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734393 Sample Accession: GSM2576177 ID: 302576177 16590. HAEC.ChIP.JUN.TNFa.4h Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734392 Sample Accession: GSM2576176 ID: 302576176 16591. HAEC.ChIP.ERG.TNFa.4h Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2576nnn/GSM2576175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2734391 Sample Accession: GSM2576175 ID: 302576175 16592. HAEC.rna.siSCR.TNFa.4h.rep2.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355123 Sample Accession: GSM2394461 ID: 302394461 16593. HAEC.rna.siSCR.TNFa.4h.rep1.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355121 Sample Accession: GSM2394460 ID: 302394460 16594. HAEC.rna.siSCR.control.4h.rep2.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355120 Sample Accession: GSM2394459 ID: 302394459 16595. HAEC.rna.siSCR.control.4h.rep1.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355119 Sample Accession: GSM2394458 ID: 302394458 16596. HAEC.rna.siSCR.4h.donor2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355118 Sample Accession: GSM2394457 ID: 302394457 16597. HAEC.rna.siSCR.4h.donor1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355117 Sample Accession: GSM2394456 ID: 302394456 16598. HAEC.rna.siIRF1.TNFa.4h.rep2.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355116 Sample Accession: GSM2394455 ID: 302394455 16599. HAEC.rna.siIRF1.TNFa.4h.rep1.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355115 Sample Accession: GSM2394454 ID: 302394454 16600. HAEC.rna.siIRF1.control.4h.rep2.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355114 Sample Accession: GSM2394453 ID: 302394453 16601. HAEC.rna.siIRF1.control.4h.rep1.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355113 Sample Accession: GSM2394452 ID: 302394452 16602. HAEC.rna.siERG.TNFa.4h.rep2.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355112 Sample Accession: GSM2394451 ID: 302394451 16603. HAEC.rna.siERG.TNFa.4h.rep1.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355111 Sample Accession: GSM2394450 ID: 302394450 16604. HAEC.rna.siERG.control.4h.rep2.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355110 Sample Accession: GSM2394449 ID: 302394449 16605. HAEC.rna.siERG.control.4h.rep1.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355109 Sample Accession: GSM2394448 ID: 302394448 16606. HAEC.rna.siERG.4h.donor2.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355108 Sample Accession: GSM2394447 ID: 302394447 16607. HAEC.rna.siERG.4h.donor2.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355107 Sample Accession: GSM2394446 ID: 302394446 16608. HAEC.rna.siERG.4h.donor1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355106 Sample Accession: GSM2394445 ID: 302394445 16609. HAEC.rna.siCEBPD.TNFa.4h.rep2.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355105 Sample Accession: GSM2394444 ID: 302394444 16610. HAEC.rna.siCEBPD.TNFa.4h.rep1.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355104 Sample Accession: GSM2394443 ID: 302394443 16611. HAEC.rna.siCEBPD.control.4h.donor3 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355103 Sample Accession: GSM2394442 ID: 302394442 16612. HAEC.rna.mock.4h.donor2.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355102 Sample Accession: GSM2394441 ID: 302394441 16613. HAEC.rna.mock.4h.donor2.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355101 Sample Accession: GSM2394440 ID: 302394440 16614. HAEC.rna.tnfa.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355100 Sample Accession: GSM2394439 ID: 302394439 16615. HAEC.rna.tnfa.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355099 Sample Accession: GSM2394438 ID: 302394438 16616. HAEC.rna.oxpapc.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355098 Sample Accession: GSM2394437 ID: 302394437 16617. HAEC.rna.oxpapc.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355097 Sample Accession: GSM2394436 ID: 302394436 16618. HAEC.rna.il1b.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355096 Sample Accession: GSM2394435 ID: 302394435 16619. HAEC.rna.il1b.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355095 Sample Accession: GSM2394434 ID: 302394434 16620. HAEC.rna.control.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355094 Sample Accession: GSM2394433 ID: 302394433 16621. HAEC.rna.control.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355093 Sample Accession: GSM2394432 ID: 302394432 16622. HAEC.input.TNFa.4h.formaldehyde Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355092 Sample Accession: GSM2394431 ID: 302394431 16623. HAEC.input.TNFa.4h.DSG Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355091 Sample Accession: GSM2394430 ID: 302394430 16624. HAEC.input.oxpapc.4h.formaldehyde Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355090 Sample Accession: GSM2394429 ID: 302394429 16625. HAEC.input.IL1b.4h.formaldehyde Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355089 Sample Accession: GSM2394428 ID: 302394428 16626. HAEC.input.IL1b.4h.DSG Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355088 Sample Accession: GSM2394427 ID: 302394427 16627. HAEC.input.control.4h.formaldehyde Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355087 Sample Accession: GSM2394426 ID: 302394426 16628. HAEC.input.control.4h.DSG Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355086 Sample Accession: GSM2394425 ID: 302394425 16629. HAEC.ChIP.p65.TNFa.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394424/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355085 Sample Accession: GSM2394424 ID: 302394424 16630. HAEC.ChIP.p65.TNFa.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394423/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355083 Sample Accession: GSM2394423 ID: 302394423 16631. HAEC.ChIP.p65.IL1b.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394422/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355081 Sample Accession: GSM2394422 ID: 302394422 16632. HAEC.ChIP.p65.IL1b.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394421/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355079 Sample Accession: GSM2394421 ID: 302394421 16633. HAEC.ChIP.p65.control.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394420/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355078 Sample Accession: GSM2394420 ID: 302394420 16634. HAEC.ChIP.p65.control.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394419/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355077 Sample Accession: GSM2394419 ID: 302394419 16635. HAEC.ChIP.NRF2.oxpapc.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394418/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355076 Sample Accession: GSM2394418 ID: 302394418 16636. HAEC.ChIP.NRF2.oxpapc.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394417/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355075 Sample Accession: GSM2394417 ID: 302394417 16637. HAEC.ChIP.JUNB.control.4h Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394416/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355074 Sample Accession: GSM2394416 ID: 302394416 16638. HAEC.ChIP.JUN.control.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394415/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355073 Sample Accession: GSM2394415 ID: 302394415 16639. HAEC.ChIP.JUN.control.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355072 Sample Accession: GSM2394414 ID: 302394414 16640. HAEC.ChIP.IRF1.TNFa.4h Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355071 Sample Accession: GSM2394413 ID: 302394413 16641. HAEC.ChIP.IRF1.IL1b.4h Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355070 Sample Accession: GSM2394412 ID: 302394412 16642. HAEC.ChIP.H3K4me2.control.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355069 Sample Accession: GSM2394411 ID: 302394411 16643. HAEC.ChIP.H3K4me2.control.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394410/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355068 Sample Accession: GSM2394410 ID: 302394410 16644. HAEC.ChIP.H3K27ac.TNFa.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394409/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355067 Sample Accession: GSM2394409 ID: 302394409 16645. HAEC.ChIP.H3K27ac.TNFa.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394408/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355066 Sample Accession: GSM2394408 ID: 302394408 16646. HAEC.ChIP.H3K27ac.oxpapc.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394407/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355065 Sample Accession: GSM2394407 ID: 302394407 16647. HAEC.ChIP.H3K27ac.oxpapc.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394406/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355064 Sample Accession: GSM2394406 ID: 302394406 16648. HAEC.ChIP.H3K27ac.IL1b.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394405/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355063 Sample Accession: GSM2394405 ID: 302394405 16649. HAEC.ChIP.H3K27ac.IL1b.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394404/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355062 Sample Accession: GSM2394404 ID: 302394404 16650. HAEC.ChIP.H3K27ac.control.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394403/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355061 Sample Accession: GSM2394403 ID: 302394403 16651. HAEC.ChIP.H3K27ac.control.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394402/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355060 Sample Accession: GSM2394402 ID: 302394402 16652. HAEC.ChIP.ERG.control.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394401/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355059 Sample Accession: GSM2394401 ID: 302394401 16653. HAEC.ChIP.ERG.control.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394400/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355058 Sample Accession: GSM2394400 ID: 302394400 16654. HAEC.ChIP.CEBPD.IL1b.4h Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394399/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355057 Sample Accession: GSM2394399 ID: 302394399 16655. HAEC.atac.tnfa.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394398/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355056 Sample Accession: GSM2394398 ID: 302394398 16656. HAEC.atac.tnfa.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394397/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355055 Sample Accession: GSM2394397 ID: 302394397 16657. HAEC.atac.oxpapc.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394396/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355054 Sample Accession: GSM2394396 ID: 302394396 16658. HAEC.atac.oxpapc.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394395/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355053 Sample Accession: GSM2394395 ID: 302394395 16659. HAEC.atac.il1b.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394394/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355052 Sample Accession: GSM2394394 ID: 302394394 16660. HAEC.atac.il1b.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394393/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355051 Sample Accession: GSM2394393 ID: 302394393 16661. HAEC.atac.control.4h.rep2 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394392/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355050 Sample Accession: GSM2394392 ID: 302394392 16662. HAEC.atac.control.4h.rep1 Organism: Homo sapiens Source name: human aortic endothelial cell Platform: GPL20301 Series: GSE89970 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355049 Sample Accession: GSM2394391 ID: 302394391 16663. S2 T4 ATAC-seq rep2 Organism: Drosophila melanogaster Source name: UPR-induced S2 cells, T4 ATAC-seq Platform: GPL13304 Series: GSE95689 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2521nnn/GSM2521731/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2612505 Sample Accession: GSM2521731 ID: 302521731 16664. S2 T4 ATAC-seq rep1 Organism: Drosophila melanogaster Source name: UPR-induced S2 cells, T4 ATAC-seq Platform: GPL13304 Series: GSE95689 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2521nnn/GSM2521730/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2612504 Sample Accession: GSM2521730 ID: 302521730 16665. S2 T1 ATAC-seq rep2 Organism: Drosophila melanogaster Source name: UPR-induced S2 cells, T1 ATAC-seq Platform: GPL13304 Series: GSE95689 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2521nnn/GSM2521729/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2612503 Sample Accession: GSM2521729 ID: 302521729 16666. S2 T1 ATAC-seq rep1 Organism: Drosophila melanogaster Source name: UPR-induced S2 cells, T1 ATAC-seq Platform: GPL13304 Series: GSE95689 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2521nnn/GSM2521728/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2612502 Sample Accession: GSM2521728 ID: 302521728 16667. S2 T0 ATAC-seq rep2 Organism: Drosophila melanogaster Source name: UPR-induced S2 cells, T0 ATAC-seq Platform: GPL13304 Series: GSE95689 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2521nnn/GSM2521727/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2612501 Sample Accession: GSM2521727 ID: 302521727 16668. S2 T0 ATAC-seq rep1 Organism: Drosophila melanogaster Source name: UPR-induced S2 cells, T0 ATAC-seq Platform: GPL13304 Series: GSE95689 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2521nnn/GSM2521726/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2612500 Sample Accession: GSM2521726 ID: 302521726 16669. Mouse_Input_7day_Rep2 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL19057 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863160 Sample Accession: GSM2642969 ID: 302642969 16670. Mouse_Input_7day_Rep1 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL19057 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863159 Sample Accession: GSM2642968 ID: 302642968 16671. Mouse_H3K27ac_7day_Rep2 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL19057 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863150 Sample Accession: GSM2642959 ID: 302642959 16672. Mouse_H3K27ac_7day_Rep1 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL19057 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863149 Sample Accession: GSM2642958 ID: 302642958 16673. Mouse_ATAC_7day_Rep1 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL19057 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863145 Sample Accession: GSM2642954 ID: 302642954 16674. Mouse_ATAC_7day_Rep2 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863146 Sample Accession: GSM2642955 ID: 302642955 16675. Mouse_RNA_7day_TGFB_2 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863133 Sample Accession: GSM2642942 ID: 302642942 16676. Mouse_RNA_7day_TGFB_1 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863132 Sample Accession: GSM2642941 ID: 302642941 16677. Mouse_RNA_7day_Rep5 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863131 Sample Accession: GSM2642940 ID: 302642940 16678. Mouse_RNA_7day_Rep4 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863130 Sample Accession: GSM2642939 ID: 302642939 16679. Mouse_RNA_7day_Rep3 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863129 Sample Accession: GSM2642938 ID: 302642938 16680. Mouse_RNA_7day_Rep2 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863128 Sample Accession: GSM2642937 ID: 302642937 16681. Mouse_RNA_7day_Rep1 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863127 Sample Accession: GSM2642936 ID: 302642936 16682. Mouse_RNA_6hr_Rep2 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863126 Sample Accession: GSM2642935 ID: 302642935 16683. Mouse_RNA_6hr_Rep1 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863125 Sample Accession: GSM2642934 ID: 302642934 16684. Mouse_RNA_24hr_Rep3 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863124 Sample Accession: GSM2642933 ID: 302642933 16685. Mouse_RNA_24hr_Rep2 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863122 Sample Accession: GSM2642932 ID: 302642932 16686. Mouse_RNA_24hr_Rep1 Organism: Mus musculus Source name: sorted_cultured_microglia Platform: GPL21103 Series: GSE89960 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2863120 Sample Accession: GSM2642931 ID: 302642931 16687. ATAC-seq_dKO_rep2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL19057 Series: GSE98063 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2586nnn/GSM2586561/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2752362 Sample Accession: GSM2586561 ID: 302586561 16688. ATAC-seq_dKO_rep1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL19057 Series: GSE98063 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2586nnn/GSM2586560/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2752361 Sample Accession: GSM2586560 ID: 302586560 16689. ATAC-seq_WT_rep2 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL19057 Series: GSE98063 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2586nnn/GSM2586559/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2752360 Sample Accession: GSM2586559 ID: 302586559 16690. ATAC-seq_WT_rep1 Organism: Mus musculus Source name: embryonic stem cells Platform: GPL19057 Series: GSE98063 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2586nnn/GSM2586558/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2752359 Sample Accession: GSM2586558 ID: 302586558 16691. ATAC-seq Satellite cells Organism: Mus musculus Source name: Satellite cells Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355631 Sample Accession: GSM2394780 ID: 302394780 16692. ATAC-seq Myoblasts Pax7-flag from C2C12 cells Organism: Mus musculus Source name: Myoblasts Pax7-flag from C2C12 cells Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355630 Sample Accession: GSM2394779 ID: 302394779 16693. ATAC-seq Myoblasts from C2C12 cells Organism: Mus musculus Source name: Myoblasts from C2C12 cells Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355629 Sample Accession: GSM2394778 ID: 302394778 16694. ATAC-seq Myoblasts flag control from C2C12 cells Organism: Mus musculus Source name: Myoblasts flag control from C2C12 cells Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355628 Sample Accession: GSM2394777 ID: 302394777 16695. ATAC-seq Myotubes from C2C12 cells Organism: Mus musculus Source name: Myotubes from C2C12 cells Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355627 Sample Accession: GSM2394776 ID: 302394776 16696. ATAC-seq Myotubes from iPax7 myogenic progenitors Organism: Mus musculus Source name: Myotubes from iPax7 myogenic progenitors Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355626 Sample Accession: GSM2394775 ID: 302394775 16697. ATAC-seq iPax7 myogenic progenitors -dox 3d Organism: Mus musculus Source name: iPax7 myogenic progenitors -dox 3d Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355625 Sample Accession: GSM2394774 ID: 302394774 16698. ATAC-seq iPax7 myogenic progenitors -dox 24h Organism: Mus musculus Source name: iPax7 myogenic progenitors -dox 24h Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355624 Sample Accession: GSM2394773 ID: 302394773 16699. ATAC-seq iPax7 myogenic progenitors -dox 12h Organism: Mus musculus Source name: iPax7 myogenic progenitors -dox 12h Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355623 Sample Accession: GSM2394772 ID: 302394772 16700. ATAC-seq iPax7 myogenic progenitors +dox Organism: Mus musculus Source name: iPax7 myogenic progenitors Platform: GPL17021 Series: GSE89977 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2394nnn/GSM2394771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2355622 Sample Accession: GSM2394771 ID: 302394771 16701. Tissue_resident_3 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568438 Sample Accession: GSM2494186 ID: 302494186 16702. Tissue_resident_2 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568437 Sample Accession: GSM2494185 ID: 302494185 16703. Tissue_resident_1 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568436 Sample Accession: GSM2494184 ID: 302494184 16704. Tissue_converted_3 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568435 Sample Accession: GSM2494183 ID: 302494183 16705. Tissue_converted_2 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568434 Sample Accession: GSM2494182 ID: 302494182 16706. Tissue_converted_1 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568433 Sample Accession: GSM2494181 ID: 302494181 16707. Monocyte_derived_3 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568432 Sample Accession: GSM2494180 ID: 302494180 16708. Monocyte_derived_2 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568431 Sample Accession: GSM2494179 ID: 302494179 16709. Monocyte_derived_1 (ATAC-Seq) Organism: Mus musculus Source name: Peritoneal macrophages Platform: GPL13112 Series: GSE95001 GSE95003 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2568430 Sample Accession: GSM2494178 ID: 302494178 16710. P20_2 Organism: Homo sapiens Source name: H1 POU5F1-IRES-eGFP Platform: GPL20301 Series: GSE81026 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386583/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2338903 Sample Accession: GSM2386583 ID: 302386583 16711. P20_1 Organism: Homo sapiens Source name: H1 POU5F1-IRES-eGFP Platform: GPL20301 Series: GSE81026 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386582/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2338902 Sample Accession: GSM2386582 ID: 302386582 16712. P17_2 Organism: Homo sapiens Source name: H1 POU5F1-IRES-eGFP Platform: GPL20301 Series: GSE81026 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386581/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2338901 Sample Accession: GSM2386581 ID: 302386581 16713. P17_1 Organism: Homo sapiens Source name: H1 POU5F1-IRES-eGFP Platform: GPL20301 Series: GSE81026 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386580/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2338900 Sample Accession: GSM2386580 ID: 302386580 16714. M3_2 Organism: Homo sapiens Source name: H1 POU5F1-IRES-eGFP Platform: GPL20301 Series: GSE81026 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2338899 Sample Accession: GSM2386579 ID: 302386579 16715. M3_1 Organism: Homo sapiens Source name: H1 POU5F1-IRES-eGFP Platform: GPL20301 Series: GSE81026 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2338898 Sample Accession: GSM2386578 ID: 302386578 16716. H1_2 Organism: Homo sapiens Source name: H1 POU5F1-IRES-eGFP Platform: GPL20301 Series: GSE81026 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2338897 Sample Accession: GSM2386577 ID: 302386577 16717. H1_1 Organism: Homo sapiens Source name: H1 POU5F1-IRES-eGFP Platform: GPL20301 Series: GSE81026 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2338896 Sample Accession: GSM2386576 ID: 302386576 16718. Sox10_ATACSeq_16ss_2 Organism: Danio rerio Source name: Sox10_ATACSeq_16ss Platform: GPL20828 Series: GSE89670 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386498/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2337863 Sample Accession: GSM2386498 ID: 302386498 16719. Sox10_ATACSeq_16ss_1 Organism: Danio rerio Source name: Sox10_ATACSeq_16ss Platform: GPL20828 Series: GSE89670 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2386nnn/GSM2386497/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2337862 Sample Accession: GSM2386497 ID: 302386497 16720. Neu-24h-siPU Rep2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79046 GSE87114 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2322nnn/GSM2322579/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2178702 Sample Accession: GSM2322579 ID: 302322579 16721. Neu-24h-siPU Rep1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79046 GSE87114 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2322nnn/GSM2322578/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2178701 Sample Accession: GSM2322578 ID: 302322578 16722. Mon-24h-siPU Rep2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79046 GSE87114 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2322nnn/GSM2322577/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2178700 Sample Accession: GSM2322577 ID: 302322577 16723. Mon-24h-siPU Rep1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79046 GSE87114 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2322nnn/GSM2322576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2178699 Sample Accession: GSM2322576 ID: 302322576 16724. Mac-24h-siPU Rep2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79046 GSE87114 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2322nnn/GSM2322575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2178698 Sample Accession: GSM2322575 ID: 302322575 16725. Mac-24h-siPU Rep1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79046 GSE87114 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2322nnn/GSM2322574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2178697 Sample Accession: GSM2322574 ID: 302322574 16726. HL60-siPU1 Rep2 ATAC-seq Organism: Homo sapiens Source name: HL-60 Platform: GPL18573 Series: GSE79046 GSE87114 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2322nnn/GSM2322573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2178696 Sample Accession: GSM2322573 ID: 302322573 16727. HL60-siPU1 Rep1 ATAC-seq Organism: Homo sapiens Source name: HL-60 Platform: GPL18573 Series: GSE79046 GSE87114 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2322nnn/GSM2322572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2178695 Sample Accession: GSM2322572 ID: 302322572 16728. 168h Monocyte-derived Mac PMA-LPS Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621454 Sample Accession: GSM2083849 ID: 302083849 16729. 168h Monocyte-derived Mac PMA-LPS Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621453 Sample Accession: GSM2083848 ID: 302083848 16730. 168h Monocyte-derived Mac PMA-LPS Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621452 Sample Accession: GSM2083847 ID: 302083847 16731. 168h Monocyte-derived Mac PMA Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621451 Sample Accession: GSM2083846 ID: 302083846 16732. 168h Monocyte-derived Mac PMA Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621450 Sample Accession: GSM2083845 ID: 302083845 16733. 168h Monocyte-derived Mac PMA Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621449 Sample Accession: GSM2083844 ID: 302083844 16734. 144h Monocyte-derived Mac PMA Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621448 Sample Accession: GSM2083843 ID: 302083843 16735. 144h Monocyte-derived Mac PMA Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621447 Sample Accession: GSM2083842 ID: 302083842 16736. 144h Monocyte-derived Mac PMA Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621446 Sample Accession: GSM2083841 ID: 302083841 16737. 132h Monocyte-derived Mac PMA Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621445 Sample Accession: GSM2083840 ID: 302083840 16738. 132h Monocyte-derived Mac PMA Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621444 Sample Accession: GSM2083839 ID: 302083839 16739. 132h Monocyte-derived Mac PMA Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621443 Sample Accession: GSM2083838 ID: 302083838 16740. 126h Monocyte-derived Mac PMA Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621442 Sample Accession: GSM2083837 ID: 302083837 16741. 126h Monocyte-derived Mac PMA Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621441 Sample Accession: GSM2083836 ID: 302083836 16742. 126h Monocyte-derived Mac PMA Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083835/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621439 Sample Accession: GSM2083835 ID: 302083835 16743. 123h Monocyte-derived Mac PMA Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083834/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621438 Sample Accession: GSM2083834 ID: 302083834 16744. 123h Monocyte-derived Mac PMA Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083833/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621437 Sample Accession: GSM2083833 ID: 302083833 16745. 123h Monocyte-derived Mac PMA Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte-derived Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083832/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621436 Sample Accession: GSM2083832 ID: 302083832 16746. 120h Monocyte LPS Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083831/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621435 Sample Accession: GSM2083831 ID: 302083831 16747. 120h Monocyte LPS Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621434 Sample Accession: GSM2083830 ID: 302083830 16748. 120h Monocyte LPS Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083829/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621433 Sample Accession: GSM2083829 ID: 302083829 16749. 120h Monocyte Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083828/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621432 Sample Accession: GSM2083828 ID: 302083828 16750. 120h Monocyte Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083827/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621431 Sample Accession: GSM2083827 ID: 302083827 16751. 120h Monocyte Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083826/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621430 Sample Accession: GSM2083826 ID: 302083826 16752. 96h Monocyte Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083825/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621429 Sample Accession: GSM2083825 ID: 302083825 16753. 96h Monocyte Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083824/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621428 Sample Accession: GSM2083824 ID: 302083824 16754. 96h Monocyte Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083823/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621427 Sample Accession: GSM2083823 ID: 302083823 16755. 48h Monocyte Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083822/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621426 Sample Accession: GSM2083822 ID: 302083822 16756. 48h Monocyte Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083821/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621425 Sample Accession: GSM2083821 ID: 302083821 16757. 48h Monocyte Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083820/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621424 Sample Accession: GSM2083820 ID: 302083820 16758. 24h Monocyte Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083819/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621423 Sample Accession: GSM2083819 ID: 302083819 16759. 24h Monocyte Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083818/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621422 Sample Accession: GSM2083818 ID: 302083818 16760. 24h Monocyte Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083817/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621421 Sample Accession: GSM2083817 ID: 302083817 16761. 12h Monocyte Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083816/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621420 Sample Accession: GSM2083816 ID: 302083816 16762. 12h Monocyte Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083815/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621419 Sample Accession: GSM2083815 ID: 302083815 16763. 12h Monocyte Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083814/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621418 Sample Accession: GSM2083814 ID: 302083814 16764. 6h Monocyte Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083813/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621417 Sample Accession: GSM2083813 ID: 302083813 16765. 6h Monocyte Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083812/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621416 Sample Accession: GSM2083812 ID: 302083812 16766. 6h Monocyte Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083811/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621415 Sample Accession: GSM2083811 ID: 302083811 16767. 3h Monocyte Rep 3 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083810/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621414 Sample Accession: GSM2083810 ID: 302083810 16768. 3h Monocyte Rep 2 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083809/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621413 Sample Accession: GSM2083809 ID: 302083809 16769. 3h Monocyte Rep 1 ATAC-seq Organism: Homo sapiens Source name: Monocyte Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083808/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621412 Sample Accession: GSM2083808 ID: 302083808 16770. 120h Neutrophil LPS Rep 3 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083807/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621411 Sample Accession: GSM2083807 ID: 302083807 16771. 120h Neutrophil LPS Rep 2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083806/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621410 Sample Accession: GSM2083806 ID: 302083806 16772. 120h Neutrophil LPS Rep 1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083805/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621409 Sample Accession: GSM2083805 ID: 302083805 16773. 120h Neutrophil Rep 3 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083804/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621408 Sample Accession: GSM2083804 ID: 302083804 16774. 120h Neutrophil Rep 2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083803/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621407 Sample Accession: GSM2083803 ID: 302083803 16775. 120h Neutrophil Rep 1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083802/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621406 Sample Accession: GSM2083802 ID: 302083802 16776. 96h Neutrophil Rep 3 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083801/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621405 Sample Accession: GSM2083801 ID: 302083801 16777. 96h Neutrophil Rep 2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083800/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621404 Sample Accession: GSM2083800 ID: 302083800 16778. 96h Neutrophil Rep 1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083799/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621403 Sample Accession: GSM2083799 ID: 302083799 16779. 48h Neutrophil Rep 3 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083798/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621360 Sample Accession: GSM2083798 ID: 302083798 16780. 48h Neutrophil Rep 2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083797/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621359 Sample Accession: GSM2083797 ID: 302083797 16781. 48h Neutrophil Rep 1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083796/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621358 Sample Accession: GSM2083796 ID: 302083796 16782. 24h Neutrophil Rep 3 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083795/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621402 Sample Accession: GSM2083795 ID: 302083795 16783. 24h Neutrophil Rep 2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083794/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621401 Sample Accession: GSM2083794 ID: 302083794 16784. 24h Neutrophil Rep 1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083793/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621400 Sample Accession: GSM2083793 ID: 302083793 16785. 12h Neutrophil Rep 3 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083792/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621399 Sample Accession: GSM2083792 ID: 302083792 16786. 12h Neutrophil Rep 2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083791/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621398 Sample Accession: GSM2083791 ID: 302083791 16787. 12h Neutrophil Rep 1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083790/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621397 Sample Accession: GSM2083790 ID: 302083790 16788. 6h Neutrophil Rep 3 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083789/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621396 Sample Accession: GSM2083789 ID: 302083789 16789. 6h Neutrophil Rep 2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621395 Sample Accession: GSM2083788 ID: 302083788 16790. 6h Neutrophil Rep 1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621394 Sample Accession: GSM2083787 ID: 302083787 16791. 3h Neutrophil Rep 3 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621393 Sample Accession: GSM2083786 ID: 302083786 16792. 3h Neutrophil Rep 2 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621392 Sample Accession: GSM2083785 ID: 302083785 16793. 3h Neutrophil Rep 1 ATAC-seq Organism: Homo sapiens Source name: Neutrophil Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621391 Sample Accession: GSM2083784 ID: 302083784 16794. 120h Macrophage LPS Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083783/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621390 Sample Accession: GSM2083783 ID: 302083783 16795. 120h Macrophage LPS Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083782/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621389 Sample Accession: GSM2083782 ID: 302083782 16796. 120h Macrophage LPS Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083781/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621388 Sample Accession: GSM2083781 ID: 302083781 16797. 120h Macrophage Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083780/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621387 Sample Accession: GSM2083780 ID: 302083780 16798. 120h Macrophage Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083779/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621386 Sample Accession: GSM2083779 ID: 302083779 16799. 120h Macrophage Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083778/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621385 Sample Accession: GSM2083778 ID: 302083778 16800. 96h Macrophage Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083777/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621384 Sample Accession: GSM2083777 ID: 302083777 16801. 96h Macrophage Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083776/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621383 Sample Accession: GSM2083776 ID: 302083776 16802. 96h Macrophage Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083775/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621382 Sample Accession: GSM2083775 ID: 302083775 16803. 48h Macrophage LPS Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083774/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621381 Sample Accession: GSM2083774 ID: 302083774 16804. 48h Macrophage LPS Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083773/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621380 Sample Accession: GSM2083773 ID: 302083773 16805. 48h Macrophage LPS Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083772/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621379 Sample Accession: GSM2083772 ID: 302083772 16806. 48h Macrophage Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083771/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621378 Sample Accession: GSM2083771 ID: 302083771 16807. 48h Macrophage Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083770/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621377 Sample Accession: GSM2083770 ID: 302083770 16808. 48h Macrophage Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083769/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621376 Sample Accession: GSM2083769 ID: 302083769 16809. 24h Macrophage Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083768/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621375 Sample Accession: GSM2083768 ID: 302083768 16810. 24h Macrophage Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083767/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621374 Sample Accession: GSM2083767 ID: 302083767 16811. 24h Macrophage Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083766/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621373 Sample Accession: GSM2083766 ID: 302083766 16812. 12h Macrophage Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621372 Sample Accession: GSM2083765 ID: 302083765 16813. 12h Macrophage Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621371 Sample Accession: GSM2083764 ID: 302083764 16814. 12h Macrophage Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083763/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621370 Sample Accession: GSM2083763 ID: 302083763 16815. 6h Macrophage Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083762/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621369 Sample Accession: GSM2083762 ID: 302083762 16816. 6h Macrophage Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083761/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621368 Sample Accession: GSM2083761 ID: 302083761 16817. 6h Macrophage Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083760/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621367 Sample Accession: GSM2083760 ID: 302083760 16818. 3h Macrophage Rep 3 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083759/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621366 Sample Accession: GSM2083759 ID: 302083759 16819. 3h Macrophage Rep 2 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083758/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621365 Sample Accession: GSM2083758 ID: 302083758 16820. 3h Macrophage Rep 1 ATAC-seq Organism: Homo sapiens Source name: Macrophage Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083757/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621364 Sample Accession: GSM2083757 ID: 302083757 16821. HL60 Rep 3 ATAC-seq Organism: Homo sapiens Source name: HL-60 Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083756/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621363 Sample Accession: GSM2083756 ID: 302083756 16822. HL60 Rep 2 ATAC-seq Organism: Homo sapiens Source name: HL-60 Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083755/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621362 Sample Accession: GSM2083755 ID: 302083755 16823. HL60 Rep 1 ATAC-seq Organism: Homo sapiens Source name: HL-60 Platform: GPL18573 Series: GSE79019 GSE79046 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2083nnn/GSM2083754/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1621361 Sample Accession: GSM2083754 ID: 302083754 16824. ATAC-seq_macrophage2 Organism: Homo sapiens Source name: THP-1 cells, + PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655446 Sample Accession: GSM2544231 ID: 302544231 16825. ATAC-seq_macrophage1d Organism: Homo sapiens Source name: THP-1 cells, + PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655445 Sample Accession: GSM2544230 ID: 302544230 16826. ATAC-seq_monocyte2d Organism: Homo sapiens Source name: THP-1 cells, - PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655444 Sample Accession: GSM2544229 ID: 302544229 16827. ATAC-seq_monocyte1d Organism: Homo sapiens Source name: THP-1 cells, - PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655443 Sample Accession: GSM2544228 ID: 302544228 16828. ATAC-seq_macrophage2c Organism: Homo sapiens Source name: THP-1 cells, + PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655442 Sample Accession: GSM2544227 ID: 302544227 16829. ATAC-seq_macrophage1c Organism: Homo sapiens Source name: THP-1 cells, + PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655441 Sample Accession: GSM2544226 ID: 302544226 16830. ATAC-seq_monocyte2c Organism: Homo sapiens Source name: THP-1 cells, - PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655440 Sample Accession: GSM2544225 ID: 302544225 16831. ATAC-seq_monocyte1c Organism: Homo sapiens Source name: THP-1 cells, - PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655439 Sample Accession: GSM2544224 ID: 302544224 16832. ATAC-seq_macrophage2b Organism: Homo sapiens Source name: THP-1 cells, + PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655438 Sample Accession: GSM2544223 ID: 302544223 16833. ATAC-seq_macrophage1b Organism: Homo sapiens Source name: THP-1 cells, + PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655437 Sample Accession: GSM2544222 ID: 302544222 16834. ATAC-seq_monocyte2b Organism: Homo sapiens Source name: THP-1 cells, - PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655436 Sample Accession: GSM2544221 ID: 302544221 16835. ATAC-seq_monocyte1b Organism: Homo sapiens Source name: THP-1 cells, - PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655435 Sample Accession: GSM2544220 ID: 302544220 16836. ATAC-seq_macrophage2a Organism: Homo sapiens Source name: THP-1 cells, + PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655434 Sample Accession: GSM2544219 ID: 302544219 16837. ATAC-seq_macrophage1a Organism: Homo sapiens Source name: THP-1 cells, + PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655433 Sample Accession: GSM2544218 ID: 302544218 16838. ATAC-seq_monocyte2a Organism: Homo sapiens Source name: THP-1 cells, - PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655432 Sample Accession: GSM2544217 ID: 302544217 16839. ATAC-seq_monocyte1a Organism: Homo sapiens Source name: THP-1 cells, - PMA exposure Platform: GPL16791 Series: GSE96800 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2655431 Sample Accession: GSM2544216 ID: 302544216 16840. K36R ATAC-seq rep3 Organism: Drosophila melanogaster Source name: Whole 3rd Instar Larvae Platform: GPL13304 Series: GSE96922 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661686 Sample Accession: GSM2545954 ID: 302545954 16841. K36R ATAC-seq rep2 Organism: Drosophila melanogaster Source name: Whole 3rd Instar Larvae Platform: GPL13304 Series: GSE96922 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661685 Sample Accession: GSM2545953 ID: 302545953 16842. K36R ATAC-seq rep1 Organism: Drosophila melanogaster Source name: Whole 3rd Instar Larvae Platform: GPL13304 Series: GSE96922 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661684 Sample Accession: GSM2545952 ID: 302545952 16843. HWT ATAC-seq rep3 Organism: Drosophila melanogaster Source name: Whole 3rd Instar Larvae Platform: GPL13304 Series: GSE96922 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661683 Sample Accession: GSM2545951 ID: 302545951 16844. HWT ATAC-seq rep2 Organism: Drosophila melanogaster Source name: Whole 3rd Instar Larvae Platform: GPL13304 Series: GSE96922 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661682 Sample Accession: GSM2545950 ID: 302545950 16845. HWT ATAC-seq rep1 Organism: Drosophila melanogaster Source name: Whole 3rd Instar Larvae Platform: GPL13304 Series: GSE96922 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2661681 Sample Accession: GSM2545949 ID: 302545949 16846. WT_AAM_5h_R1 Organism: Mus musculus Source name: Primary bone marrow-derived macrophages (BMDM) Platform: GPL13112 Series: GSE88698 GSE88702 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2344nnn/GSM2344445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2242842 Sample Accession: GSM2344445 ID: 302344445 16847. WT_AAM_UT_R1 Organism: Mus musculus Source name: Primary bone marrow-derived macrophages (BMDM) Platform: GPL13112 Series: GSE88698 GSE88702 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2344nnn/GSM2344444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2242841 Sample Accession: GSM2344444 ID: 302344444 16848. E14_Tn5Control (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cell genomic DNA, Tn5 tagmented Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2341nnn/GSM2341283/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236900 Sample Accession: GSM2341283 ID: 302341283 16849. BRG1fl_ATAC_72hTAM_rep3 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, tamoxifen-treated, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236899 Sample Accession: GSM2341282 ID: 302341282 16850. BRG1fl_ATAC_72hTAM_rep2 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, tamoxifen-treated, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236898 Sample Accession: GSM2341281 ID: 302341281 16851. BRG1fl_ATAC_72hTAM_rep1 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, tamoxifen-treated, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236897 Sample Accession: GSM2341280 ID: 302341280 16852. BRG1fl_ATAC_UNT_rep3 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236896 Sample Accession: GSM2341279 ID: 302341279 16853. BRG1fl_ATAC_UNT_rep2 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236895 Sample Accession: GSM2341278 ID: 302341278 16854. BRG1fl_ATAC_UNT_rep1 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236894 Sample Accession: GSM2341277 ID: 302341277 16855. ZHBTC4_ATAC_24hDOX_rep3 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, doxycycline-treated, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236893 Sample Accession: GSM2341276 ID: 302341276 16856. ZHBTC4_ATAC_24hDOX_rep2 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, doxycycline-treated, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236892 Sample Accession: GSM2341275 ID: 302341275 16857. ZHBTC4_ATAC_24hDOX_rep1 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, doxycycline-treated, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236891 Sample Accession: GSM2341274 ID: 302341274 16858. ZHBTC4_ATAC_UNT_rep3 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236890 Sample Accession: GSM2341273 ID: 302341273 16859. ZHBTC4_ATAC_UNT_rep2 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236889 Sample Accession: GSM2341272 ID: 302341272 16860. ZHBTC4_ATAC_UNT_rep1 (ATAC-Seq) Organism: Mus musculus Source name: Embryonic stem cells, untreated control, ATAC-seq Platform: GPL19057 Series: GSE87819 GSE87822 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2236888 Sample Accession: GSM2341271 ID: 302341271 16861. Baf53afl- Tax rep2 Organism: Mus musculus Source name: Baf53afl/- ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467476/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514809 Sample Accession: GSM2467476 ID: 302467476 16862. Baf53afl- EtOH rep2 Organism: Mus musculus Source name: Baf53afl/- ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467475/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514808 Sample Accession: GSM2467475 ID: 302467475 16863. Baf53afl- Tax rep1 Organism: Mus musculus Source name: Baf53afl/- ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467474/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514807 Sample Accession: GSM2467474 ID: 302467474 16864. Baf53afl- EtOH rep1 Organism: Mus musculus Source name: Baf53afl/- ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467473/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514806 Sample Accession: GSM2467473 ID: 302467473 16865. Brgflfl Tax rep2 Organism: Mus musculus Source name: Brg1fl/fl ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467472/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514805 Sample Accession: GSM2467472 ID: 302467472 16866. Brgflfl EtOH rep2 Organism: Mus musculus Source name: Brg1fl/fl ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514804 Sample Accession: GSM2467471 ID: 302467471 16867. Brgflfl Tax rep1 Organism: Mus musculus Source name: Brg1fl/fl ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514803 Sample Accession: GSM2467470 ID: 302467470 16868. Brgflfl EtOH rep1 Organism: Mus musculus Source name: Brg1fl/fl ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467469/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514802 Sample Accession: GSM2467469 ID: 302467469 16869. ICRF 1h rep3 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514801 Sample Accession: GSM2467468 ID: 302467468 16870. DMSO 1h rep3 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514800 Sample Accession: GSM2467467 ID: 302467467 16871. ICRF 1h rep2 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467466/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514799 Sample Accession: GSM2467466 ID: 302467466 16872. DMSO 1h rep2 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467465/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514798 Sample Accession: GSM2467465 ID: 302467465 16873. ICRF 1h rep1 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467464/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514797 Sample Accession: GSM2467464 ID: 302467464 16874. DMSO 1h rep1 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467463/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514796 Sample Accession: GSM2467463 ID: 302467463 16875. ICRF 24h rep2 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467462/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514795 Sample Accession: GSM2467462 ID: 302467462 16876. DMSO 24h rep2 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467461/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514794 Sample Accession: GSM2467461 ID: 302467461 16877. ICRF 24h rep1 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467460/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514793 Sample Accession: GSM2467460 ID: 302467460 16878. DMSO 24h rep1 Organism: Mus musculus Source name: WT ES cells Platform: GPL19057 Series: GSE94039 GSE94041 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2467nnn/GSM2467459/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2514792 Sample Accession: GSM2467459 ID: 302467459 16879. ATAC seq for MSC infected with OTX2 Organism: Homo sapiens Source name: MSC Platform: GPL18573 Series: GSE92584 GSE92585 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2433nnn/GSM2433023/ Sample Accession: GSM2433023 ID: 302433023 16880. ATAC seq for MSC infected with empty vector Organism: Homo sapiens Source name: MSC Platform: GPL18573 Series: GSE92584 GSE92585 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2433nnn/GSM2433022/ Sample Accession: GSM2433022 ID: 302433022 16881. ATAC seq for D283 cell line Organism: Homo sapiens Source name: D283 Platform: GPL18573 Series: GSE92584 GSE92585 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2433nnn/GSM2433021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2436102 Sample Accession: GSM2433021 ID: 302433021 16882. COLO320_AA_ATAC Organism: Homo sapiens Source name: Colorectal cancer cell line Platform: GPL18573 Series: GSE83968 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2224nnn/GSM2224602/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1892853 Sample Accession: GSM2224602 ID: 302224602 16883. COLO320_GA_ATAC Organism: Homo sapiens Source name: Colorectal cancer cell line Platform: GPL18573 Series: GSE83968 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2224nnn/GSM2224601/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1892852 Sample Accession: GSM2224601 ID: 302224601 16884. COLO320_GG_ATAC Organism: Homo sapiens Source name: Colorectal cancer cell line Platform: GPL18573 Series: GSE83968 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2224nnn/GSM2224600/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1892851 Sample Accession: GSM2224600 ID: 302224600 16885. COLO320_ATAC Organism: Homo sapiens Source name: Colorectal cancer cell line Platform: GPL18573 Series: GSE83968 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2224nnn/GSM2224599/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1892850 Sample Accession: GSM2224599 ID: 302224599 16886. SNU175_ATAC Organism: Homo sapiens Source name: Colorectal cancer cell line Platform: GPL18573 Series: GSE83968 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2224nnn/GSM2224598/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1892849 Sample Accession: GSM2224598 ID: 302224598 16887. ATAC-seq_singleSort_nrlKOPhotoreceptor_2 Organism: Mus musculus Source name: nrlKO blue cone photoreceptors Platform: GPL17021 Series: GSE83312 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2199nnn/GSM2199339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1841253 Sample Accession: GSM2199339 ID: 302199339 16888. ATAC-seq_singleSort_nrlKOPhotoreceptor_1 Organism: Mus musculus Source name: nrlKO blue cone photoreceptors Platform: GPL17021 Series: GSE83312 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2199nnn/GSM2199338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1841252 Sample Accession: GSM2199338 ID: 302199338 16889. ATAC-seq_doubleSort_greenCone_4 Organism: Mus musculus Source name: green cone photoreceptors Platform: GPL17021 Series: GSE83312 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2199nnn/GSM2199337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1841251 Sample Accession: GSM2199337 ID: 302199337 16890. ATAC-seq_doubleSort_greenCone_3 Organism: Mus musculus Source name: green cone photoreceptors Platform: GPL17021 Series: GSE83312 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2199nnn/GSM2199336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1841250 Sample Accession: GSM2199336 ID: 302199336 16891. ATAC-seq_singleSort_greenCone_2 Organism: Mus musculus Source name: green cone photoreceptors Platform: GPL17021 Series: GSE83312 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2199nnn/GSM2199335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1841249 Sample Accession: GSM2199335 ID: 302199335 16892. ATAC-seq_singleSort_greenCone_1 Organism: Mus musculus Source name: green cone photoreceptors Platform: GPL17021 Series: GSE83312 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2199nnn/GSM2199334/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1841248 Sample Accession: GSM2199334 ID: 302199334 16893. ATAC-seq_singleSort_rod_2 Organism: Mus musculus Source name: rod photoreceptors Platform: GPL17021 Series: GSE83312 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2199nnn/GSM2199333/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1841247 Sample Accession: GSM2199333 ID: 302199333 16894. ATAC-seq_singleSort_rod_1 Organism: Mus musculus Source name: rod photoreceptors Platform: GPL17021 Series: GSE83312 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2199nnn/GSM2199332/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1841246 Sample Accession: GSM2199332 ID: 302199332 16895. ATAC-seq from dendritic cell (ENCLB409HKJ) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 0 ng/mL Lipopolysaccharide for 0 hours Platform: GPL19057 Series: GSE94226 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523913 Sample Accession: GSM2471306 ID: 302471306 16896. ATAC-seq from dendritic cell (ENCLB676XDS) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 0 ng/mL Lipopolysaccharide for 0 hours Platform: GPL19057 Series: GSE94226 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523912 Sample Accession: GSM2471305 ID: 302471305 16897. ATAC-seq from dendritic cell (ENCLB607DLY) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 1 hour Platform: GPL19057 Series: GSE94221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523908 Sample Accession: GSM2471299 ID: 302471299 16898. ATAC-seq from dendritic cell (ENCLB297GDC) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 1 hour Platform: GPL19057 Series: GSE94221 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523907 Sample Accession: GSM2471298 ID: 302471298 16899. ATAC-seq from dendritic cell (ENCLB543XCD) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 2 hours Platform: GPL19057 Series: GSE94212 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523895 Sample Accession: GSM2471288 ID: 302471288 16900. ATAC-seq from dendritic cell (ENCLB230ZEV) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 2 hours Platform: GPL19057 Series: GSE94212 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523894 Sample Accession: GSM2471287 ID: 302471287 16901. ATAC-seq from dendritic cell (ENCLB690QLA) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 6 hours Platform: GPL19057 Series: GSE94211 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523899 Sample Accession: GSM2471286 ID: 302471286 16902. ATAC-seq from dendritic cell (ENCLB952DVH) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 6 hours Platform: GPL19057 Series: GSE94211 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523898 Sample Accession: GSM2471285 ID: 302471285 16903. ATAC-seq from dendritic cell (ENCLB160HOT) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 4 hours Platform: GPL19057 Series: GSE94181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523860 Sample Accession: GSM2471254 ID: 302471254 16904. ATAC-seq from dendritic cell (ENCLB704IAI) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 4 hours Platform: GPL19057 Series: GSE94181 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523859 Sample Accession: GSM2471253 ID: 302471253 16905. ATAC-seq from dendritic cell (ENCLB888LUQ) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 30 minutes Platform: GPL19057 Series: GSE94167 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523845 Sample Accession: GSM2471238 ID: 302471238 16906. ATAC-seq from dendritic cell (ENCLB570NPV) Organism: Mus musculus Source name: Mus musculus dendritic in vitro differentiated cells derived from multi-cellular organism treated with 100 ng/mL Lipopolysaccharide for 30 minutes Platform: GPL19057 Series: GSE94167 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523844 Sample Accession: GSM2471237 ID: 302471237 16907. ATAC-seq from dendritic cell (ENCLB989NXK) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 6 hours Platform: GPL18573 Series: GSE94217 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523896 Sample Accession: GSM2471294 ID: 302471294 16908. ATAC-seq from dendritic cell (ENCLB146SIB) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 30 minutes Platform: GPL18573 Series: GSE94179 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523864 Sample Accession: GSM2471251 ID: 302471251 16909. ATAC-seq from dendritic cell (ENCLB887PKE) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours Platform: GPL18573 Series: GSE94177 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523862 Sample Accession: GSM2471249 ID: 302471249 16910. ATAC-seq from dendritic cell (ENCLB930EUP) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 4 hours Platform: GPL18573 Series: GSE94175 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523858 Sample Accession: GSM2471247 ID: 302471247 16911. ATAC-seq from dendritic cell (ENCLB432EGK) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 2 hours Platform: GPL18573 Series: GSE94174 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523855 Sample Accession: GSM2471246 ID: 302471246 16912. ATAC-seq from dendritic cell (ENCLB300DIR) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 30 minutes Platform: GPL18573 Series: GSE94163 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523840 Sample Accession: GSM2471232 ID: 302471232 16913. ATAC-seq from dendritic cell (ENCLB811FLK) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours Platform: GPL11154 Series: GSE94222 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523906 Sample Accession: GSM2471300 ID: 302471300 16914. ATAC-seq from dendritic cell (ENCLB892RWD) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 4 hours Platform: GPL11154 Series: GSE94220 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523905 Sample Accession: GSM2471297 ID: 302471297 16915. ATAC-seq from dendritic cell (ENCLB936LKP) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 4 hours Platform: GPL11154 Series: GSE94219 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523903 Sample Accession: GSM2471296 ID: 302471296 16916. ATAC-seq from dendritic cell (ENCLB486ZGV) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 4 hours Platform: GPL11154 Series: GSE94216 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523893 Sample Accession: GSM2471293 ID: 302471293 16917. ATAC-seq from dendritic cell (ENCLB371MUO) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 1 hour Platform: GPL11154 Series: GSE94206 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523888 Sample Accession: GSM2471280 ID: 302471280 16918. ATAC-seq from dendritic cell (ENCLB275NZH) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 30 minutes Platform: GPL11154 Series: GSE94202 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523881 Sample Accession: GSM2471276 ID: 302471276 16919. ATAC-seq from dendritic cell (ENCLB975DIV) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 2 hours Platform: GPL11154 Series: GSE94201 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523882 Sample Accession: GSM2471275 ID: 302471275 16920. ATAC-seq from dendritic cell (ENCLB223DKL) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 30 minutes Platform: GPL11154 Series: GSE94200 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523887 Sample Accession: GSM2471274 ID: 302471274 16921. ATAC-seq from dendritic cell (ENCLB460BFR) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 4 hours Platform: GPL11154 Series: GSE94198 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523878 Sample Accession: GSM2471271 ID: 302471271 16922. ATAC-seq from dendritic cell (ENCLB586KIS) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours Platform: GPL11154 Series: GSE94196 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523884 Sample Accession: GSM2471269 ID: 302471269 16923. ATAC-seq from dendritic cell (ENCLB072MNJ) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 1 hour Platform: GPL11154 Series: GSE94195 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523871 Sample Accession: GSM2471268 ID: 302471268 16924. ATAC-seq from dendritic cell (ENCLB313ORP) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 2 hours Platform: GPL11154 Series: GSE94193 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523866 Sample Accession: GSM2471266 ID: 302471266 16925. ATAC-seq from dendritic cell (ENCLB305NJC) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 2 hours Platform: GPL11154 Series: GSE94187 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523861 Sample Accession: GSM2471260 ID: 302471260 16926. ATAC-seq from dendritic cell (ENCLB065VMV) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours Platform: GPL11154 Series: GSE94182 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523872 Sample Accession: GSM2471255 ID: 302471255 16927. ATAC-seq from dendritic cell (ENCLB685FCM) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 4 hours Platform: GPL11154 Series: GSE94178 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523865 Sample Accession: GSM2471250 ID: 302471250 16928. ATAC-seq from dendritic cell (ENCLB384NOX) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 0 ng/mL Lipopolysaccharide for 0 hours Platform: GPL11154 Series: GSE94173 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523854 Sample Accession: GSM2471245 ID: 302471245 16929. ATAC-seq from dendritic cell (ENCLB455GDX) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 30 minutes Platform: GPL11154 Series: GSE94170 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523851 Sample Accession: GSM2471241 ID: 302471241 16930. ATAC-seq from dendritic cell (ENCLB683LFW) Organism: Homo sapiens Source name: Homo sapiens dendritic in vitro differentiated cells treated with 100 ng/mL Lipopolysaccharide for 2 hours Platform: GPL11154 Series: GSE94168 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2523850 Sample Accession: GSM2471239 ID: 302471239 16931. E12.5_Heart_ATAC_rep2 Organism: Mus musculus Source name: Heart Platform: GPL17021 Series: GSE88789 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2346nnn/GSM2346471/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2246395 Sample Accession: GSM2346471 ID: 302346471 16932. E12.5_Heart_ATAC_rep1 Organism: Mus musculus Source name: Heart Platform: GPL17021 Series: GSE88789 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2346nnn/GSM2346470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2246394 Sample Accession: GSM2346470 ID: 302346470 16933. shRNA2_ATRA [ATAC-Seq] Organism: Homo sapiens Source name: acute promyelocytic leukemia cell line (NB4) Platform: GPL18573 Series: GSE93876 GSE93878 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2506344 Sample Accession: GSM2464388 ID: 302464388 16934. shRNA1_ATRA [ATAC-Seq] Organism: Homo sapiens Source name: acute promyelocytic leukemia cell line (NB4) Platform: GPL18573 Series: GSE93876 GSE93878 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2506343 Sample Accession: GSM2464387 ID: 302464387 16935. CTRL_ATRA [ATAC-Seq] Organism: Homo sapiens Source name: acute promyelocytic leukemia cell line (NB4) Platform: GPL18573 Series: GSE93876 GSE93878 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2506342 Sample Accession: GSM2464386 ID: 302464386 16936. shRNA2_DMSO [ATAC-Seq] Organism: Homo sapiens Source name: acute promyelocytic leukemia cell line (NB4) Platform: GPL18573 Series: GSE93876 GSE93878 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2506341 Sample Accession: GSM2464385 ID: 302464385 16937. shRNA1_DMSO [ATAC-Seq] Organism: Homo sapiens Source name: acute promyelocytic leukemia cell line (NB4) Platform: GPL18573 Series: GSE93876 GSE93878 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2506340 Sample Accession: GSM2464384 ID: 302464384 16938. CTRL_DMSO [ATAC-Seq] Organism: Homo sapiens Source name: acute promyelocytic leukemia cell line (NB4) Platform: GPL18573 Series: GSE93876 GSE93878 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2506339 Sample Accession: GSM2464383 ID: 302464383 16939. ATAC-seq Vh12/Vk4 Tg DKO B-1a [39308] Organism: Mus musculus Source name: ATAC-seq Vh12/Vk4 Tg DKO B-1a Platform: GPL17021 Series: GSE93764 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2461nnn/GSM2461746/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2500349 Sample Accession: GSM2461746 ID: 302461746 16940. ATAC-seq Vh12/Vk4 Tg B-1a [39307] Organism: Mus musculus Source name: ATAC-seq Vh12/Vk4 Tg B-1a Platform: GPL17021 Series: GSE93764 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2461nnn/GSM2461745/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2500348 Sample Accession: GSM2461745 ID: 302461745 16941. ATACseq_replicate3 Organism: Mus musculus Source name: Sperm Platform: GPL13112 Series: GSE79225 GSE79230 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1631868 Sample Accession: GSM2088378 ID: 302088378 16942. ATACseq_replicate2 Organism: Mus musculus Source name: Sperm Platform: GPL13112 Series: GSE79225 GSE79230 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1631867 Sample Accession: GSM2088377 ID: 302088377 16943. ATACseq_replicate1 Organism: Mus musculus Source name: Sperm Platform: GPL13112 Series: GSE79225 GSE79230 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1631866 Sample Accession: GSM2088376 ID: 302088376 16944. E24_rep3 (ATAC-Seq) Organism: Mus musculus Source name: E24_rep3 Platform: GPL17021 Series: GSE86365 GSE86367 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2300nnn/GSM2300965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2095510 Sample Accession: GSM2300965 ID: 302300965 16945. E24_rep2 (ATAC-Seq) Organism: Mus musculus Source name: E24_rep2 Platform: GPL17021 Series: GSE86365 GSE86367 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2300nnn/GSM2300964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2095509 Sample Accession: GSM2300964 ID: 302300964 16946. E24_rep1 (ATAC-Seq) Organism: Mus musculus Source name: E24_rep1 Platform: GPL17021 Series: GSE86365 GSE86367 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2300nnn/GSM2300963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2095508 Sample Accession: GSM2300963 ID: 302300963 16947. shRNA-cFos_E1_rep2 ATAC-seq Organism: Mus musculus Source name: shRNA-cFos_E1_rep2 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804235 Sample Accession: GSM2180018 ID: 302180018 16948. shRNA-cFos_E1_rep1 ATAC-seq Organism: Mus musculus Source name: shRNA-cFos_E1_rep1 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804234 Sample Accession: GSM2180017 ID: 302180017 16949. shRNA-cFos_E0_rep3 ATAC-seq Organism: Mus musculus Source name: shRNA-cFos_E0_rep3 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804233 Sample Accession: GSM2180016 ID: 302180016 16950. shRNA-cFos_E0_rep2 ATAC-seq Organism: Mus musculus Source name: shRNA-cFos_E0_rep2 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804232 Sample Accession: GSM2180015 ID: 302180015 16951. shRNA-cFos_E0_rep1 ATAC-seq Organism: Mus musculus Source name: shRNA-cFos_E0_rep1 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804231 Sample Accession: GSM2180014 ID: 302180014 16952. shRNA-Ctrl_E1_rep3 ATAC-seq Organism: Mus musculus Source name: shRNA-Ctrl_E1_rep3 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804230 Sample Accession: GSM2180013 ID: 302180013 16953. shRNA-Ctrl_E1_rep2 ATAC-seq Organism: Mus musculus Source name: shRNA-Ctrl_E1_rep2 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804229 Sample Accession: GSM2180012 ID: 302180012 16954. shRNA-Ctrl_E1_rep1 ATAC-seq Organism: Mus musculus Source name: shRNA-Ctrl_E1_rep1 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804228 Sample Accession: GSM2180011 ID: 302180011 16955. shRNA-Ctrl_E0_rep3 ATAC-seq Organism: Mus musculus Source name: shRNA-Ctrl_E0_rep3 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804227 Sample Accession: GSM2180010 ID: 302180010 16956. shRNA-Ctrl_E0_rep2 ATAC-seq Organism: Mus musculus Source name: shRNA-Ctrl_E0_rep2 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804226 Sample Accession: GSM2180009 ID: 302180009 16957. shRNA-Ctrl_E0_rep1 ATAC-seq Organism: Mus musculus Source name: shRNA-Ctrl_E0_rep1 Platform: GPL17021 Series: GSE82012 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804225 Sample Accession: GSM2180008 ID: 302180008 16958. cFos_OE_rep3 ATAC-seq Organism: Mus musculus Source name: cFos_OE_rep3 Platform: GPL17021 Series: GSE82011 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804224 Sample Accession: GSM2180007 ID: 302180007 16959. cFos_OE_rep2 ATAC-seq Organism: Mus musculus Source name: cFos_OE_rep2 Platform: GPL17021 Series: GSE82011 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804223 Sample Accession: GSM2180006 ID: 302180006 16960. cFos_OE_rep1 ATAC-seq Organism: Mus musculus Source name: cFos_OE_rep1 Platform: GPL17021 Series: GSE82011 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180005/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804222 Sample Accession: GSM2180005 ID: 302180005 16961. EYFP_OE_rep3 ATAC-seq Organism: Mus musculus Source name: EYFP_OE_rep3 Platform: GPL17021 Series: GSE82011 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804221 Sample Accession: GSM2180004 ID: 302180004 16962. EYFP_OE_rep2 ATAC-seq Organism: Mus musculus Source name: EYFP_OE_rep2 Platform: GPL17021 Series: GSE82011 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804220 Sample Accession: GSM2180003 ID: 302180003 16963. EYFP_OE_rep1 ATAC-seq Organism: Mus musculus Source name: EYFP_OE_rep1 Platform: GPL17021 Series: GSE82011 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804219 Sample Accession: GSM2180002 ID: 302180002 16964. E4_rep4 ATAC-seq Organism: Mus musculus Source name: E4_rep4 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804218 Sample Accession: GSM2180001 ID: 302180001 16965. E4_rep3 ATAC-seq Organism: Mus musculus Source name: E4_rep3 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2180nnn/GSM2180000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804217 Sample Accession: GSM2180000 ID: 302180000 16966. E4_rep2 ATAC-seq Organism: Mus musculus Source name: E4_rep2 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804216 Sample Accession: GSM2179999 ID: 302179999 16967. E4_rep1 ATAC-seq Organism: Mus musculus Source name: E4_rep1 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804215 Sample Accession: GSM2179998 ID: 302179998 16968. E1_rep4 ATAC-seq Organism: Mus musculus Source name: E1_rep4 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804214 Sample Accession: GSM2179997 ID: 302179997 16969. E1_rep3 ATAC-seq Organism: Mus musculus Source name: E1_rep3 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804213 Sample Accession: GSM2179996 ID: 302179996 16970. E1_rep2 ATAC-seq Organism: Mus musculus Source name: E1_rep2 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804212 Sample Accession: GSM2179995 ID: 302179995 16971. E1_rep1 ATAC-seq Organism: Mus musculus Source name: E1_rep1 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804211 Sample Accession: GSM2179994 ID: 302179994 16972. E0_rep4 ATAC-seq Organism: Mus musculus Source name: E0_rep4 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804210 Sample Accession: GSM2179993 ID: 302179993 16973. E0_rep3 ATAC-seq Organism: Mus musculus Source name: E0_rep3 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804209 Sample Accession: GSM2179992 ID: 302179992 16974. E0_rep2 ATAC-seq Organism: Mus musculus Source name: E0_rep2 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804208 Sample Accession: GSM2179991 ID: 302179991 16975. E0_rep1 ATAC-seq Organism: Mus musculus Source name: E0_rep1 Platform: GPL17021 Series: GSE82010 GSE82015 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2179nnn/GSM2179990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1804207 Sample Accession: GSM2179990 ID: 302179990 16976. KO_SC_3 Organism: Mus musculus Source name: spermatocytes Platform: GPL17021 Series: GSE81470 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2152nnn/GSM2152937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1764262 Sample Accession: GSM2152937 ID: 302152937 16977. KO_SC_2 Organism: Mus musculus Source name: spermatocytes Platform: GPL17021 Series: GSE81470 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2152nnn/GSM2152936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1764261 Sample Accession: GSM2152936 ID: 302152936 16978. KO_SC_1 Organism: Mus musculus Source name: spermatocytes Platform: GPL17021 Series: GSE81470 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2152nnn/GSM2152935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1764260 Sample Accession: GSM2152935 ID: 302152935 16979. HET_SC_3 Organism: Mus musculus Source name: spermatocytes Platform: GPL17021 Series: GSE81470 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2152nnn/GSM2152934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1764259 Sample Accession: GSM2152934 ID: 302152934 16980. HET_SC_2 Organism: Mus musculus Source name: spermatocytes Platform: GPL17021 Series: GSE81470 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2152nnn/GSM2152933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1764258 Sample Accession: GSM2152933 ID: 302152933 16981. HET_SC_1 Organism: Mus musculus Source name: spermatocytes Platform: GPL17021 Series: GSE81470 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2152nnn/GSM2152932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1764257 Sample Accession: GSM2152932 ID: 302152932 16982. BJATAClib8 Organism: Homo sapiens Source name: Neonatal foreskin Platform: GPL16791 Series: GSE81736 GSE81807 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1792441 Sample Accession: GSM2174882 ID: 302174882 16983. BJATAClib7 Organism: Homo sapiens Source name: Neonatal foreskin Platform: GPL16791 Series: GSE81736 GSE81807 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1792440 Sample Accession: GSM2174881 ID: 302174881 16984. BJATAClib6 Organism: Homo sapiens Source name: Neonatal foreskin Platform: GPL16791 Series: GSE81736 GSE81807 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1792439 Sample Accession: GSM2174880 ID: 302174880 16985. BJATAClib5 Organism: Homo sapiens Source name: Neonatal foreskin Platform: GPL16791 Series: GSE81736 GSE81807 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1792438 Sample Accession: GSM2174879 ID: 302174879 16986. BJATAClib4 Organism: Homo sapiens Source name: Neonatal foreskin Platform: GPL16791 Series: GSE81736 GSE81807 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1792437 Sample Accession: GSM2174878 ID: 302174878 16987. BJATAClib3 Organism: Homo sapiens Source name: Neonatal foreskin Platform: GPL16791 Series: GSE81736 GSE81807 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1792436 Sample Accession: GSM2174877 ID: 302174877 16988. BJATAClib2 Organism: Homo sapiens Source name: Neonatal foreskin Platform: GPL16791 Series: GSE81736 GSE81807 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1792435 Sample Accession: GSM2174876 ID: 302174876 16989. BJATAClib1 Organism: Homo sapiens Source name: Neonatal foreskin Platform: GPL16791 Series: GSE81736 GSE81807 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1792434 Sample Accession: GSM2174875 ID: 302174875 16990. WT-1380-ProB [ATAC-seq-WT1380-ProB-2] Organism: Mus musculus Source name: WT-1380-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381305 Sample Accession: GSM2410059 ID: 302410059 16991. WT-1380-ProB [ATAC-seq-WT1380-ProB-1] Organism: Mus musculus Source name: WT-1380-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381304 Sample Accession: GSM2410058 ID: 302410058 16992. WT-1377-ProB [ATAC-seq-WT-1377-ProB-2] Organism: Mus musculus Source name: WT-1377-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381303 Sample Accession: GSM2410057 ID: 302410057 16993. WT-1377-ProB [ATAC-seq-WT-1377-ProB-1] Organism: Mus musculus Source name: WT-1377-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381302 Sample Accession: GSM2410056 ID: 302410056 16994. LN-683-CD19+_Thy1_2- [ATAC-seq-TH-LN683-OP9-day2-CD19+_Thy1_2-_2] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381301 Sample Accession: GSM2410055 ID: 302410055 16995. LN-683-CD19+_Thy1_2- [ATAC-seq-TH-LN683-OP9-day2-CD19+_Thy1_2-_1] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381300 Sample Accession: GSM2410054 ID: 302410054 16996. LN-683-CD19-_Thy1_2+ [ATAC-seq-TH-LN683-Delta-day14-CD19-_Thy1_2+_2] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381299 Sample Accession: GSM2410053 ID: 302410053 16997. LN-683-CD19-_Thy1_2+ [ATAC-seq-TH-LN683-Delta-day14-CD19-_Thy1_2+_1] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381298 Sample Accession: GSM2410052 ID: 302410052 16998. LN-683-CD19-_Thy1_2+ [ATAC-seq-TH-LN683-Delta-day6-CD19-_Thy1_2+_2] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381297 Sample Accession: GSM2410051 ID: 302410051 16999. LN-683-CD19-_Thy1_2+ [ATAC-seq-TH-LN683-Delta-day6-CD19-_Thy1_2+_1] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381296 Sample Accession: GSM2410050 ID: 302410050 17000. LN-683-CD19+_Thy1_2+ [ATAC-seq-TH-LN683-Delta-day2-CD19+_Thy1_2+_2] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381295 Sample Accession: GSM2410049 ID: 302410049 17001. LN-683-CD19+_Thy1_2+ [ATAC-seq-TH-LN683-Delta-day2-CD19+_Thy1_2+_1] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381294 Sample Accession: GSM2410048 ID: 302410048 17002. LN-683-CD19+_Thy1_2- [ATAC-seq-TH-LN683-Delta-day2-CD19+_THy1_2-_2] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381293 Sample Accession: GSM2410047 ID: 302410047 17003. LN-683-CD19+_Thy1_2- [ATAC-seq-TH-LN683-Delta-day2-CD19+_Thy1_1-_1] Organism: Mus musculus Source name: TH-LN-683-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381292 Sample Accession: GSM2410046 ID: 302410046 17004. LN-381-CD19+_pMiG-transduced [ATAC-seq-TH-LN381-pMiG-CD19+_day1-2] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381291 Sample Accession: GSM2410045 ID: 302410045 17005. LN-381-CD19+_pMiG-transduced [ATAC-seq-TH-LN381-pMiG-CD19+_day1-1] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381290 Sample Accession: GSM2410044 ID: 302410044 17006. LN-381-CD19+_CD11b+_CEBPa-transduced [ATAC-seq-TH-LN381-CEBPa-CD19+_Cd11+_day2-2] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381289 Sample Accession: GSM2410043 ID: 302410043 17007. LN-381-CD19+_CD11b+_CEBPa-transduced [ATAC-seq-TH-LN381-CEBPa-CD19+_Cd11+_day2-1] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381288 Sample Accession: GSM2410042 ID: 302410042 17008. LN-381-CD11b+-CEBPa-transduced [ATAC-seq-TH-LN381-CEBPa-CD11b+_day5-2] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381287 Sample Accession: GSM2410041 ID: 302410041 17009. LN-381-CD11b+-CEBPa-transduced [ATAC-seq-TH-LN381-CEBPa-CD11b+_day5-1] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381286 Sample Accession: GSM2410040 ID: 302410040 17010. TH-ProB-cell-1381 [ATAC-seq-TH-1381-ProB-2] Organism: Mus musculus Source name: TH-ProB-cell-1381 Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381285 Sample Accession: GSM2410039 ID: 302410039 17011. TH-ProB-cell-1381 [ATAC-seq-TH-1381-ProB-1] Organism: Mus musculus Source name: TH-ProB-cell-1381 Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381284 Sample Accession: GSM2410038 ID: 302410038 17012. TH-ProB-cell-1376 [ATAC-seq-TH-1376-ProB-2] Organism: Mus musculus Source name: TH-ProB-cell-1376 Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381283 Sample Accession: GSM2410037 ID: 302410037 17013. TH-ProB-cell-1376 [ATAC-seq-TH-1376-ProB-1] Organism: Mus musculus Source name: TH-ProB-cell-1376 Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381282 Sample Accession: GSM2410036 ID: 302410036 17014. BM-LSK-cells-differentiated-to-Thy1.2+ [ATAC-seq-LSK-diff-Thy1_2-2] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381281 Sample Accession: GSM2410035 ID: 302410035 17015. BM-LSK-cells-differentiated-to-Thy1.2+ [ATAC-seq-LSK-diff-Thy1_2-1] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381280 Sample Accession: GSM2410034 ID: 302410034 17016. BM-LSK-cells-differentiated-to-CD19+ [ATAC-seq-LSK-diff-CD19-2] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381279 Sample Accession: GSM2410033 ID: 302410033 17017. BM-LSK-cells-differentiated-to-CD19+ [ATAC-seq-LSK-diff-CD19-1] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381278 Sample Accession: GSM2410032 ID: 302410032 17018. BM-LSK-cells-differentiated-to-CD11b+ [ATAC-seq-LSK-diff-CD11b-2] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381277 Sample Accession: GSM2410031 ID: 302410031 17019. BM-LSK-cells-differentiated-to-CD11b+ [ATAC-seq-LSK-diff-CD11b-1] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381276 Sample Accession: GSM2410030 ID: 302410030 17020. BM-LSK-cells-undifferentiated [ATAC-seq-LSK_3] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381275 Sample Accession: GSM2410029 ID: 302410029 17021. BM-LSK-cells-undifferentiated [ATAC-seq-LSK_2] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381274 Sample Accession: GSM2410028 ID: 302410028 17022. BM-LSK-cells-undifferentiated [ATAC-seq-LSK_1] Organism: Mus musculus Source name: Wt-BM-LSK-cells Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381273 Sample Accession: GSM2410027 ID: 302410027 17023. LN-619-Thy1.2+_CD19- [ATAC-seq-TH-LN619-OP9delta_Thy+_CD19-_2] Organism: Mus musculus Source name: TH-LN-619-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381272 Sample Accession: GSM2410026 ID: 302410026 17024. LN-619-Thy1.2+_CD19- [ATAC-seq-TH-LN619-OP9delta_Thy+_CD19-_1] Organism: Mus musculus Source name: TH-LN-619-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381271 Sample Accession: GSM2410025 ID: 302410025 17025. LN-619-Thy1.2+_CD19+ [ATAC-seq-TH-LN619-OP9_Thy+_CD19+_2] Organism: Mus musculus Source name: TH-LN-619-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381270 Sample Accession: GSM2410024 ID: 302410024 17026. LN-619-Thy1.2+_CD19+ [ATAC-seq-TH-LN619-OP9_Thy+_CD19+_1] Organism: Mus musculus Source name: TH-LN-619-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381269 Sample Accession: GSM2410023 ID: 302410023 17027. LN-619-CD19+-pMiG-transduced [ATAC-seq-TH-LN619-pMiG_CD19+_2] Organism: Mus musculus Source name: TH-LN-619-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381268 Sample Accession: GSM2410022 ID: 302410022 17028. LN-619-CD19+-pMiG-transduced [ATAC-seq-TH-LN619-pMiG_CD19+_1] Organism: Mus musculus Source name: TH-LN-619-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381267 Sample Accession: GSM2410021 ID: 302410021 17029. LN-619-CD11b+-CEBPa-transduced [ATAC-seq-TH-LN619-CEBPa_CD11b+_2] Organism: Mus musculus Source name: TH-LN-619-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381266 Sample Accession: GSM2410020 ID: 302410020 17030. LN-619-CD11b+-CEBPa-transduced [ATAC-seq-TH-LN619-CEBPa_CD11b+_1] Organism: Mus musculus Source name: TH-LN-619-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381265 Sample Accession: GSM2410019 ID: 302410019 17031. LN-381-Thy1.2+_CD19- [ATAC-seq-TH-LN381-OP9delta_Thy+_CD19-_2] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381264 Sample Accession: GSM2410018 ID: 302410018 17032. LN-381-Thy1.2+_CD19- [ATAC-seq-TH-LN381-OP9delta_Thy+_CD19-_1] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381263 Sample Accession: GSM2410017 ID: 302410017 17033. LN-381-Thy1.2+_CD19+ [ATAC-seq-TH-LN381-OP9_Thy+_CD19+_2] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381262 Sample Accession: GSM2410016 ID: 302410016 17034. LN-381-Thy1.2+_CD19+ [ATAC-seq-TH-LN381-OP9_Thy+_CD19+_1] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381261 Sample Accession: GSM2410015 ID: 302410015 17035. LN-381-CD19+-pMiG-transduced [ATAC-seq-TH-LN381-pMiG-CD19+_2] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381260 Sample Accession: GSM2410014 ID: 302410014 17036. LN-381-CD19+-pMiG-transduced [ATAC-seq-TH-LN381-pMiG-CD19+_1] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381259 Sample Accession: GSM2410013 ID: 302410013 17037. LN-381-CD11b+-CEBPa-transduced [ATAC-seq-TH-LN381-CEBPa-CD11b+_2] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381258 Sample Accession: GSM2410012 ID: 302410012 17038. LN-381-CD11b+-CEBPa-transduced [ATAC-seq-TH-LN381-CEBPa-CD11b+_1] Organism: Mus musculus Source name: TH-LN-381-ProB Platform: GPL19057 Series: GSE90655 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2381257 Sample Accession: GSM2410011 ID: 302410011 17039. ATAC-seq CdxKO EpiSCs Chiron48h Organism: Mus musculus Source name: ATAC-seq CdxKO EpiSCs Chiron48h Platform: GPL19057 Series: GSE84899 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2253nnn/GSM2253722/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1980028 Sample Accession: GSM2253722 ID: 302253722 17040. ATAC-seq CdxKO EpiSCs Organism: Mus musculus Source name: ATAC-seq CdxKO EpiSCs Platform: GPL19057 Series: GSE84899 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2253nnn/GSM2253721/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1980027 Sample Accession: GSM2253721 ID: 302253721 17041. MPEC rep3, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_MPEC_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254761 Sample Accession: GSM2356815 ID: 302356815 17042. MPEC rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_MPEC_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254760 Sample Accession: GSM2356814 ID: 302356814 17043. MPEC rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_MPEC_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254759 Sample Accession: GSM2356813 ID: 302356813 17044. SLEC rep3, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_SLEC_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254758 Sample Accession: GSM2356812 ID: 302356812 17045. SLEC rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_SLEC_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254757 Sample Accession: GSM2356811 ID: 302356811 17046. SLEC rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_SLEC_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254756 Sample Accession: GSM2356810 ID: 302356810 17047. invitro 10U rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 10U_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254755 Sample Accession: GSM2356809 ID: 302356809 17048. invitro 10U rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 10U_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254754 Sample Accession: GSM2356808 ID: 302356808 17049. invitro 10U PMAIonoCsA rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 10U PMAIonoCsA_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254753 Sample Accession: GSM2356807 ID: 302356807 17050. invitro 10U PMAIonoCsA rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 10U PMAIonoCsA_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254752 Sample Accession: GSM2356806 ID: 302356806 17051. invitro 10U PMAIono rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 10U PMAIono_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254751 Sample Accession: GSM2356805 ID: 302356805 17052. invitro 10U PMAIono rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 10U PMAIono_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254750 Sample Accession: GSM2356804 ID: 302356804 17053. invitro 10U Iono rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 10U Iono_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254749 Sample Accession: GSM2356803 ID: 302356803 17054. invitro 10U Iono rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 10U Iono_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254748 Sample Accession: GSM2356802 ID: 302356802 17055. invitro 100U rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 100U_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254747 Sample Accession: GSM2356801 ID: 302356801 17056. invitro 100U rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro 100U_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254746 Sample Accession: GSM2356800 ID: 302356800 17057. naive rep4, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_naive_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254745 Sample Accession: GSM2356799 ID: 302356799 17058. naive rep3, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_naive_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254744 Sample Accession: GSM2356798 ID: 302356798 17059. naive rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_naive_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254743 Sample Accession: GSM2356797 ID: 302356797 17060. naive rep1tr2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_naive_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254742 Sample Accession: GSM2356796 ID: 302356796 17061. naive rep1tr1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_naive_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254741 Sample Accession: GSM2356795 ID: 302356795 17062. invitro Mock rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro Mock_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254740 Sample Accession: GSM2356794 ID: 302356794 17063. invitro Mock rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro Mock_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254739 Sample Accession: GSM2356793 ID: 302356793 17064. invitro NFAT CARITDBDmut rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro NFAT CARITDBDmut_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254738 Sample Accession: GSM2356792 ID: 302356792 17065. invitro NFAT CARITDBDmut rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro NFAT CARITDBDmut_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254737 Sample Accession: GSM2356791 ID: 302356791 17066. invitro NFAT CARIT rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro NFAT CARIT_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254736 Sample Accession: GSM2356790 ID: 302356790 17067. invitro NFAT CARIT rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_invitro NFAT CARIT_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254735 Sample Accession: GSM2356789 ID: 302356789 17068. exhausted rep4, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_exhausted_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254734 Sample Accession: GSM2356788 ID: 302356788 17069. exhausted rep3, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_exhausted_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254733 Sample Accession: GSM2356787 ID: 302356787 17070. exhausted rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_exhausted_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254732 Sample Accession: GSM2356786 ID: 302356786 17071. memory rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_memory_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254731 Sample Accession: GSM2356785 ID: 302356785 17072. memory rep1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_memory_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254730 Sample Accession: GSM2356784 ID: 302356784 17073. d35 KLRG1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_d35 KLRG1_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254729 Sample Accession: GSM2356783 ID: 302356783 17074. effector rep2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_effector_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254728 Sample Accession: GSM2356782 ID: 302356782 17075. effector rep1tr2, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_effector_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254727 Sample Accession: GSM2356781 ID: 302356781 17076. effector rep1tr1, ATAC-seq Organism: Mus musculus Source name: Spleen CD8+ T cell_effector_ATAC-seq Platform: GPL17021 Series: GSE88987 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2254726 Sample Accession: GSM2356780 ID: 302356780 17077. cTEC ATAC-Seq 2 Organism: Mus musculus Source name: Cortical TECs from WT mice Platform: GPL19057 Series: GSE90048 GSE90050 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2396nnn/GSM2396553/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2359712 Sample Accession: GSM2396553 ID: 302396553 17078. cTEC ATAC-Seq 1 Organism: Mus musculus Source name: Cortical TECs from WT mice Platform: GPL19057 Series: GSE90048 GSE90050 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2396nnn/GSM2396552/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2359711 Sample Accession: GSM2396552 ID: 302396552 17079. mTEC Lo ATAC-Seq 2 Organism: Mus musculus Source name: Immature mTECs from WT mice Platform: GPL19057 Series: GSE90048 GSE90050 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2396nnn/GSM2396551/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2359710 Sample Accession: GSM2396551 ID: 302396551 17080. mTEC Lo ATAC-Seq 1 Organism: Mus musculus Source name: Immature mTECs from WT mice Platform: GPL19057 Series: GSE90048 GSE90050 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2396nnn/GSM2396550/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2359709 Sample Accession: GSM2396550 ID: 302396550 17081. mTEC Hi ATAC-Seq 2 Organism: Mus musculus Source name: Mature mTECs from WT mice Platform: GPL19057 Series: GSE90048 GSE90050 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2396nnn/GSM2396549/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2359708 Sample Accession: GSM2396549 ID: 302396549 17082. mTEC Hi ATAC-Seq 1 Organism: Mus musculus Source name: Mature mTECs from WT mice Platform: GPL19057 Series: GSE90048 GSE90050 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2396nnn/GSM2396548/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2359707 Sample Accession: GSM2396548 ID: 302396548 17083. 48h ATAC-Seq - Replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE80483 GSE80511 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716847 Sample Accession: GSM2128927 ID: 302128927 17084. 48h ATAC-Seq - Replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE80483 GSE80511 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716846 Sample Accession: GSM2128926 ID: 302128926 17085. 0h ATAC-Seq - Replicate 2 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE80483 GSE80511 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716845 Sample Accession: GSM2128925 ID: 302128925 17086. 0h ATAC-Seq - Replicate 1 Organism: Mus musculus Source name: ES-derived embryoid bodies with induced transcription factors Platform: GPL19057 Series: GSE80483 GSE80511 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1716844 Sample Accession: GSM2128924 ID: 302128924 17087. ATAC_seq_day6 Organism: Mus musculus Source name: Postmitotic motor neurons day 6 Platform: GPL13112 Series: GSE79561 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2098nnn/GSM2098391/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1659054 Sample Accession: GSM2098391 ID: 302098391 17088. ATAC_seq_day5 Organism: Mus musculus Source name: Postmitotic motor neurons day 5 Platform: GPL13112 Series: GSE79561 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2098nnn/GSM2098390/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1659053 Sample Accession: GSM2098390 ID: 302098390 17089. ATAC_seq_day4 Organism: Mus musculus Source name: Motor neurons progenitors day 4 Platform: GPL13112 Series: GSE79561 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2098nnn/GSM2098389/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1659052 Sample Accession: GSM2098389 ID: 302098389 17090. ATAC_seq_day2 Organism: Mus musculus Source name: Primitive ectodermal cells day 2 Platform: GPL13112 Series: GSE79561 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2098nnn/GSM2098388/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1659051 Sample Accession: GSM2098388 ID: 302098388 17091. NPC_XY10 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21103 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962920 Sample Accession: GSM2247129 ID: 302247129 17092. NPC_XY9 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21103 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962919 Sample Accession: GSM2247128 ID: 302247128 17093. NPC_XY8 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21103 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962918 Sample Accession: GSM2247127 ID: 302247127 17094. NPC_XY7 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21103 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962917 Sample Accession: GSM2247126 ID: 302247126 17095. NPC_XY6 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21103 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962916 Sample Accession: GSM2247125 ID: 302247125 17096. NPC_XY5 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL21103 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962915 Sample Accession: GSM2247124 ID: 302247124 17097. NPC_XY16 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962926 Sample Accession: GSM2247135 ID: 302247135 17098. NPC_XY15 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962925 Sample Accession: GSM2247134 ID: 302247134 17099. NPC_XY14 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962924 Sample Accession: GSM2247133 ID: 302247133 17100. NPC_XY13 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962923 Sample Accession: GSM2247132 ID: 302247132 17101. NPC_XY12 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962922 Sample Accession: GSM2247131 ID: 302247131 17102. NPC_XY11 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962921 Sample Accession: GSM2247130 ID: 302247130 17103. NPC_XX4 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962914 Sample Accession: GSM2247123 ID: 302247123 17104. NPC_XX3 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962913 Sample Accession: GSM2247122 ID: 302247122 17105. NPC_XX2 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962912 Sample Accession: GSM2247121 ID: 302247121 17106. NPC_XX1 ATAC-seq Organism: Mus musculus Source name: neural progenitor cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962911 Sample Accession: GSM2247120 ID: 302247120 17107. ESC_XY2 ATAC-seq Organism: Mus musculus Source name: mouse embryonic stem cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962910 Sample Accession: GSM2247119 ID: 302247119 17108. ESC_XX1 ATAC-seq Organism: Mus musculus Source name: mouse embryonic stem cells Platform: GPL19057 Series: GSE84646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962909 Sample Accession: GSM2247118 ID: 302247118 17109. ATAC seq Te2/3 DKO iNKT BR3 young Organism: Mus musculus Source name: Te2/3 DKO iNKT biological replicate (BR) 3 Platform: GPL17021 Series: GSE66834 GSE85743 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2033496 Sample Accession: GSM2283404 ID: 302283404 17110. ATAC seq Te2/3 DKO iNKT BR2 young Organism: Mus musculus Source name: Te2/3 DKO iNKT biological replicate (BR) 2 Platform: GPL17021 Series: GSE66834 GSE85743 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2033495 Sample Accession: GSM2283403 ID: 302283403 17111. ATAC seq Te2/3 DKO iNKT BR1 young Organism: Mus musculus Source name: Te2/3 DKO iNKT biological replicate (BR) 1 Platform: GPL17021 Series: GSE66834 GSE85743 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2033494 Sample Accession: GSM2283402 ID: 302283402 17112. ATAC seq WT iNKT BR3 Organism: Mus musculus Source name: wild type iNKT cells biological replicate (BR) 3 Platform: GPL17021 Series: GSE66834 GSE85743 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2033493 Sample Accession: GSM2283401 ID: 302283401 17113. ATAC seq WT iNKT BR2 Organism: Mus musculus Source name: wild type iNKT cells biological replicate (BR) 2 Platform: GPL17021 Series: GSE66834 GSE85743 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2033492 Sample Accession: GSM2283400 ID: 302283400 17114. ATAC seq WT iNKT BR1 Organism: Mus musculus Source name: wild type iNKT cells biological replicate (BR) 1 Platform: GPL17021 Series: GSE66834 GSE85743 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2033491 Sample Accession: GSM2283399 ID: 302283399 17115. ATAC_RPMI_d6_8454 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325691/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185367 Sample Accession: GSM2325691 ID: 302325691 17116. ATAC_RPMI_d1_8451 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325690/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185366 Sample Accession: GSM2325690 ID: 302325690 17117. ATAC_RPMI_4h_8448 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325689/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185365 Sample Accession: GSM2325689 ID: 302325689 17118. ATAC_RPMI_1h_8445 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325688/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185364 Sample Accession: GSM2325688 ID: 302325688 17119. ATAC_Mono_8444 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325687/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185363 Sample Accession: GSM2325687 ID: 302325687 17120. ATAC_LPS_d6_8455 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325686/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185362 Sample Accession: GSM2325686 ID: 302325686 17121. ATAC_LPS_d1_8452 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325685/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185361 Sample Accession: GSM2325685 ID: 302325685 17122. ATAC_LPS_4h_8449 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325684/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185360 Sample Accession: GSM2325684 ID: 302325684 17123. ATAC_LPS_1h_8446 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325683/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185359 Sample Accession: GSM2325683 ID: 302325683 17124. ATAC_BG_d6_8456 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325682/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185358 Sample Accession: GSM2325682 ID: 302325682 17125. ATAC_BG_d1_8453 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325681/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185357 Sample Accession: GSM2325681 ID: 302325681 17126. ATAC_BG_4h_8450 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325680/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185356 Sample Accession: GSM2325680 ID: 302325680 17127. ATAC_BG_1h_8447 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL18573 Series: GSE85246 GSE87218 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325679/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185355 Sample Accession: GSM2325679 ID: 302325679 17128. IBET_4h_LPS_don73_10838 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325678/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185349 Sample Accession: GSM2325678 ID: 302325678 17129. D3_coIBET_RPMI_restim_don73_10849 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325677/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185348 Sample Accession: GSM2325677 ID: 302325677 17130. D3_coIBET_RPMI_don73_10842 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325676/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185347 Sample Accession: GSM2325676 ID: 302325676 17131. D3_coIBET_LPS_restim_don73_10850 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325675/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185346 Sample Accession: GSM2325675 ID: 302325675 17132. D3_coIBET_LPS_don73_10843 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325674/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185345 Sample Accession: GSM2325674 ID: 302325674 17133. D3_Rescue_RPMI_BGd2_restim_don73_10851 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325673/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185344 Sample Accession: GSM2325673 ID: 302325673 17134. D3_Rescue_RPMI_BGd2_don73_10844 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325672/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185343 Sample Accession: GSM2325672 ID: 302325672 17135. D3_Rescue_LPS_BGd2_restim_don73_10852 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325671/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185342 Sample Accession: GSM2325671 ID: 302325671 17136. D3_Rescue_LPS_BGd2_don73_10845 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325670/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185341 Sample Accession: GSM2325670 ID: 302325670 17137. D3_RPMI_restim_don73_10846 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325669/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185340 Sample Accession: GSM2325669 ID: 302325669 17138. D3_RPMI_don73_10839 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325668/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185339 Sample Accession: GSM2325668 ID: 302325668 17139. D3_LPS_restim_don73_10847 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325667/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185338 Sample Accession: GSM2325667 ID: 302325667 17140. D3_LPS_don73_10840 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325666/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185337 Sample Accession: GSM2325666 ID: 302325666 17141. D3_BG_restim_don73_10848 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325665/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185336 Sample Accession: GSM2325665 ID: 302325665 17142. D3_BG_don73_10841 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2325nnn/GSM2325664/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2185335 Sample Accession: GSM2325664 ID: 302325664 17143. BG_d6_rep2_H3K4me3 Organism: Homo sapiens Source name: BG d6 rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263054/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004321 Sample Accession: GSM2263054 ID: 302263054 17144. LPS_d6_rep2_H3K27ac Organism: Homo sapiens Source name: LPS d6 rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263053/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004320 Sample Accession: GSM2263053 ID: 302263053 17145. LPS_4h_rep2_H3K4me1 Organism: Homo sapiens Source name: LPS 4h rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263052/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004319 Sample Accession: GSM2263052 ID: 302263052 17146. LPS_d1_rep2_H3K4me3 Organism: Homo sapiens Source name: LPS d1 rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263051/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004318 Sample Accession: GSM2263051 ID: 302263051 17147. don73_LPS_d6_24hr_BG_H3K4me1 Organism: Homo sapiens Source name: don73 LPS d6 24hr BG H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263050/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004317 Sample Accession: GSM2263050 ID: 302263050 17148. LPS_4h_rep1_H3K4me1 Organism: Homo sapiens Source name: LPS 4h rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263049/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004316 Sample Accession: GSM2263049 ID: 302263049 17149. LPS_1h_rep2_H3K4me3 Organism: Homo sapiens Source name: LPS 1h rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263048/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004315 Sample Accession: GSM2263048 ID: 302263048 17150. BG_R_H3K9me3 Organism: Homo sapiens Source name: BG R H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263047/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004314 Sample Accession: GSM2263047 ID: 302263047 17151. LPS_d6_rep2_H3K4me3 Organism: Homo sapiens Source name: LPS d6 rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263046/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004313 Sample Accession: GSM2263046 ID: 302263046 17152. BG_4h_rep1_H3K4me1 Organism: Homo sapiens Source name: BG 4h rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263045/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004312 Sample Accession: GSM2263045 ID: 302263045 17153. RPMI_1h_rep2_H3K27ac Organism: Homo sapiens Source name: RPMI 1h rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263044/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004311 Sample Accession: GSM2263044 ID: 302263044 17154. BG_d1_rep1_H3K4me3 Organism: Homo sapiens Source name: BG d1 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263043/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004310 Sample Accession: GSM2263043 ID: 302263043 17155. RPMI_d6_H3K9me3 Organism: Homo sapiens Source name: RPMI d6 H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263042/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004309 Sample Accession: GSM2263042 ID: 302263042 17156. LPS_d6_H3K9me3 Organism: Homo sapiens Source name: LPS d6 H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004308 Sample Accession: GSM2263041 ID: 302263041 17157. BG_d1_H3K9me3 Organism: Homo sapiens Source name: BG d1 H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004307 Sample Accession: GSM2263040 ID: 302263040 17158. BG_d1_rep2_H3K4me3 Organism: Homo sapiens Source name: BG d1 rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004306 Sample Accession: GSM2263039 ID: 302263039 17159. LPS_4h_rep1_H3K4me3 Organism: Homo sapiens Source name: LPS 4h rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004305 Sample Accession: GSM2263038 ID: 302263038 17160. BG_d6_rep1_H3K27me3 Organism: Homo sapiens Source name: BG d6 rep1 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004304 Sample Accession: GSM2263037 ID: 302263037 17161. d0_rep1_H3K27ac Organism: Homo sapiens Source name: d0 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004303 Sample Accession: GSM2263036 ID: 302263036 17162. don73_LPS_d6_24hr_BG_H3K27ac Organism: Homo sapiens Source name: don73 LPS d6 24hr BG H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004302 Sample Accession: GSM2263035 ID: 302263035 17163. BG_d6_rep2_H3K27ac Organism: Homo sapiens Source name: BG d6 rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004301 Sample Accession: GSM2263034 ID: 302263034 17164. RPMI_d6_rep1_H3K4me1 Organism: Homo sapiens Source name: RPMI d6 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004300 Sample Accession: GSM2263033 ID: 302263033 17165. don74_RPMI_d6_H3K27ac Organism: Homo sapiens Source name: don74 RPMI d6 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263032/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004299 Sample Accession: GSM2263032 ID: 302263032 17166. LPS_d6_rep1_H3K4me3 Organism: Homo sapiens Source name: LPS d6 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263031/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004298 Sample Accession: GSM2263031 ID: 302263031 17167. BG_d6_rep1_H3K4me1 Organism: Homo sapiens Source name: BG d6 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263030/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004297 Sample Accession: GSM2263030 ID: 302263030 17168. BG_1h_rep2_H3K4me1 Organism: Homo sapiens Source name: BG 1h rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263029/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004296 Sample Accession: GSM2263029 ID: 302263029 17169. BG_4h_H3K9me3 Organism: Homo sapiens Source name: BG 4h H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004295 Sample Accession: GSM2263028 ID: 302263028 17170. RPMI_d6_rep1_H3K27ac Organism: Homo sapiens Source name: RPMI d6 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004294 Sample Accession: GSM2263027 ID: 302263027 17171. RPMI_1h_rep1_H3K27ac Organism: Homo sapiens Source name: RPMI 1h rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004293 Sample Accession: GSM2263026 ID: 302263026 17172. RPMI_d1_rep2_H3K4me1 Organism: Homo sapiens Source name: RPMI d1 rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004292 Sample Accession: GSM2263025 ID: 302263025 17173. Mo_d0_H3K9me3 Organism: Homo sapiens Source name: Mo d0 H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004291 Sample Accession: GSM2263024 ID: 302263024 17174. RPMI_4h_rep2_H3K4me1 Organism: Homo sapiens Source name: RPMI 4h rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004290 Sample Accession: GSM2263023 ID: 302263023 17175. RPMI_d1_H3K9me3 Organism: Homo sapiens Source name: RPMI d1 H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004289 Sample Accession: GSM2263022 ID: 302263022 17176. LPS_1h_rep2_H3K4me1 Organism: Homo sapiens Source name: LPS 1h rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004288 Sample Accession: GSM2263021 ID: 302263021 17177. LPS_d1_rep2_H3K4me1 Organism: Homo sapiens Source name: LPS d1 rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004287 Sample Accession: GSM2263020 ID: 302263020 17178. RPMI_4h_rep1_H3K27ac Organism: Homo sapiens Source name: RPMI 4h rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004286 Sample Accession: GSM2263019 ID: 302263019 17179. LPS_1h_rep2_H3K27ac Organism: Homo sapiens Source name: LPS 1h rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004285 Sample Accession: GSM2263018 ID: 302263018 17180. BG_4h_H3K27me3 Organism: Homo sapiens Source name: BG 4h H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004284 Sample Accession: GSM2263017 ID: 302263017 17181. RPMI_d1_rep1_H3K4me3 Organism: Homo sapiens Source name: RPMI d1 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004283 Sample Accession: GSM2263016 ID: 302263016 17182. RPMI_d6_rep2_H3K4me3 Organism: Homo sapiens Source name: RPMI d6 rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004282 Sample Accession: GSM2263015 ID: 302263015 17183. LPS_4h_H3K27me3 Organism: Homo sapiens Source name: LPS 4h H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004281 Sample Accession: GSM2263014 ID: 302263014 17184. BG_4h_rep2_H3K4me1 Organism: Homo sapiens Source name: BG 4h rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004280 Sample Accession: GSM2263013 ID: 302263013 17185. RPMI_4h_H3K9me3 Organism: Homo sapiens Source name: RPMI 4h H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004279 Sample Accession: GSM2263012 ID: 302263012 17186. LPS_4h_rep1_H3K27ac Organism: Homo sapiens Source name: LPS 4h rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004278 Sample Accession: GSM2263011 ID: 302263011 17187. BG_1h_rep1_H3K27ac Organism: Homo sapiens Source name: BG 1h rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263010/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004277 Sample Accession: GSM2263010 ID: 302263010 17188. BG_d7_rep1_H3K27ac Organism: Homo sapiens Source name: BG d7 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263009/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004276 Sample Accession: GSM2263009 ID: 302263009 17189. BG_d7_rep1_H3K4me1 Organism: Homo sapiens Source name: BG d7 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263008/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004275 Sample Accession: GSM2263008 ID: 302263008 17190. RPMI_d6_rep2_H3K4me1 Organism: Homo sapiens Source name: RPMI d6 rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263007/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004274 Sample Accession: GSM2263007 ID: 302263007 17191. d0_rep1_H3K4me1 Organism: Homo sapiens Source name: d0 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263006/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004273 Sample Accession: GSM2263006 ID: 302263006 17192. LPS_d6_rep1_H3K27me3 Organism: Homo sapiens Source name: LPS d6 rep1 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263005/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004272 Sample Accession: GSM2263005 ID: 302263005 17193. RPMI_R_rep2_H3K27me3 Organism: Homo sapiens Source name: RPMI R rep2 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004271 Sample Accession: GSM2263004 ID: 302263004 17194. RPMI_d1_rep1_H3K4me1 Organism: Homo sapiens Source name: RPMI d1 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004270 Sample Accession: GSM2263003 ID: 302263003 17195. d0_rep2_H3K4me1 Organism: Homo sapiens Source name: d0 rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004269 Sample Accession: GSM2263002 ID: 302263002 17196. d0_rep2_H3K27ac Organism: Homo sapiens Source name: d0 rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004268 Sample Accession: GSM2263001 ID: 302263001 17197. BG_d6_rep2_H3K27me3 Organism: Homo sapiens Source name: BG d6 rep2 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2263nnn/GSM2263000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004267 Sample Accession: GSM2263000 ID: 302263000 17198. LPS_4h_rep2_H3K27ac Organism: Homo sapiens Source name: LPS 4h rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262999/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004266 Sample Accession: GSM2262999 ID: 302262999 17199. RPMI_4h_rep2_H3K4me3 Organism: Homo sapiens Source name: RPMI 4h rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262998/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004265 Sample Accession: GSM2262998 ID: 302262998 17200. LPS_d7_rep1_H3K4me3 Organism: Homo sapiens Source name: LPS d7 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262997/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004264 Sample Accession: GSM2262997 ID: 302262997 17201. LPS_d6_rep1_H3K4me1 Organism: Homo sapiens Source name: LPS d6 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262996/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004263 Sample Accession: GSM2262996 ID: 302262996 17202. BG_R_rep2_H3K27me3 Organism: Homo sapiens Source name: BG R rep2 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262995/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004262 Sample Accession: GSM2262995 ID: 302262995 17203. BG_d1_rep2_H3K4me1 Organism: Homo sapiens Source name: BG d1 rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262994/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004261 Sample Accession: GSM2262994 ID: 302262994 17204. d0_H3K27me3 Organism: Homo sapiens Source name: d0 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262993/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004260 Sample Accession: GSM2262993 ID: 302262993 17205. RPMI_d7_rep1_H3K27ac Organism: Homo sapiens Source name: RPMI d7 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262992/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004259 Sample Accession: GSM2262992 ID: 302262992 17206. BG_d1_rep1_H3K4me1 Organism: Homo sapiens Source name: BG d1 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262991/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004258 Sample Accession: GSM2262991 ID: 302262991 17207. RPMI_d1_rep2_H3K27ac Organism: Homo sapiens Source name: RPMI d1 rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262990/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004257 Sample Accession: GSM2262990 ID: 302262990 17208. RPMI_4h_H3K27me3 Organism: Homo sapiens Source name: RPMI 4h H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262989/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004256 Sample Accession: GSM2262989 ID: 302262989 17209. BG_d1_rep1_H3K27ac Organism: Homo sapiens Source name: BG d1 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262988/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004255 Sample Accession: GSM2262988 ID: 302262988 17210. LPS_1h_rep1_H3K4me3 Organism: Homo sapiens Source name: LPS 1h rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262987/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004254 Sample Accession: GSM2262987 ID: 302262987 17211. LPS_R_H3K9me3 Organism: Homo sapiens Source name: LPS R H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262986/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004253 Sample Accession: GSM2262986 ID: 302262986 17212. don74_LPS_d6_H3K27ac Organism: Homo sapiens Source name: don74 LPS d6 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262985/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004252 Sample Accession: GSM2262985 ID: 302262985 17213. RPMI_1h_rep2_H3K4me1 Organism: Homo sapiens Source name: RPMI 1h rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262984/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004251 Sample Accession: GSM2262984 ID: 302262984 17214. don74_LPS_d6_24hr_BG_H3K4me1 Organism: Homo sapiens Source name: don74 LPS d6 24hr BG H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262983/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004250 Sample Accession: GSM2262983 ID: 302262983 17215. LPS_d7_rep1_H3K4me1 Organism: Homo sapiens Source name: LPS d7 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262982/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004249 Sample Accession: GSM2262982 ID: 302262982 17216. don73_LPS_d6_H3K27ac Organism: Homo sapiens Source name: don73 LPS d6 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262981/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004248 Sample Accession: GSM2262981 ID: 302262981 17217. BG_d6_rep1_H3K4me3 Organism: Homo sapiens Source name: BG d6 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262980/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004247 Sample Accession: GSM2262980 ID: 302262980 17218. RPMI_d7_rep1_H3K4me1 Organism: Homo sapiens Source name: RPMI d7 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262979/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004246 Sample Accession: GSM2262979 ID: 302262979 17219. RPMI_d1_H3K27me3 Organism: Homo sapiens Source name: RPMI d1 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262978/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004245 Sample Accession: GSM2262978 ID: 302262978 17220. RPMI_4h_rep2_H3K27ac Organism: Homo sapiens Source name: RPMI 4h rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262977/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004244 Sample Accession: GSM2262977 ID: 302262977 17221. RPMI_4h_rep1_H3K4me3 Organism: Homo sapiens Source name: RPMI 4h rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004243 Sample Accession: GSM2262976 ID: 302262976 17222. BG_d1_H3K27me3 Organism: Homo sapiens Source name: BG d1 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004242 Sample Accession: GSM2262975 ID: 302262975 17223. LPS_d1_H3K9me3 Organism: Homo sapiens Source name: LPS d1 H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262974/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004241 Sample Accession: GSM2262974 ID: 302262974 17224. RPMI_d1_rep2_H3K4me3 Organism: Homo sapiens Source name: RPMI d1 rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262973/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004240 Sample Accession: GSM2262973 ID: 302262973 17225. don74_LPS_d6_H3K4me1 Organism: Homo sapiens Source name: don74 LPS d6 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262972/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004239 Sample Accession: GSM2262972 ID: 302262972 17226. BG_4h_rep2_H3K4me3 Organism: Homo sapiens Source name: BG 4h rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262971/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004238 Sample Accession: GSM2262971 ID: 302262971 17227. RPMI_d1_rep1_H3K27ac Organism: Homo sapiens Source name: RPMI d1 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262970/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004237 Sample Accession: GSM2262970 ID: 302262970 17228. don74_LPS_d6_24hr_BG_H3K27ac Organism: Homo sapiens Source name: don74 LPS d6 24hr BG H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262969/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004236 Sample Accession: GSM2262969 ID: 302262969 17229. RPMI_d6_rep2_H3K27me3 Organism: Homo sapiens Source name: RPMI d6 rep2 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004235 Sample Accession: GSM2262968 ID: 302262968 17230. LPS_4h_H3K9me3 Organism: Homo sapiens Source name: LPS 4h H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004234 Sample Accession: GSM2262967 ID: 302262967 17231. BG_1h_rep2_H3K27ac Organism: Homo sapiens Source name: BG 1h rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004233 Sample Accession: GSM2262966 ID: 302262966 17232. d0_rep1_H3K4me3 Organism: Homo sapiens Source name: d0 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004232 Sample Accession: GSM2262965 ID: 302262965 17233. LPS_d6_rep2_H3K27me3 Organism: Homo sapiens Source name: LPS d6 rep2 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004231 Sample Accession: GSM2262964 ID: 302262964 17234. RPMI_d6_rep2_H3K27ac Organism: Homo sapiens Source name: RPMI d6 rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004230 Sample Accession: GSM2262963 ID: 302262963 17235. LPS_4h_rep2_H3K4me3 Organism: Homo sapiens Source name: LPS 4h rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262962/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004229 Sample Accession: GSM2262962 ID: 302262962 17236. BG_d6_rep2_H3K4me1 Organism: Homo sapiens Source name: BG d6 rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262961/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004228 Sample Accession: GSM2262961 ID: 302262961 17237. RPMI_d6_rep1_H3K27me3 Organism: Homo sapiens Source name: RPMI d6 rep1 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262960/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004227 Sample Accession: GSM2262960 ID: 302262960 17238. don74_RPMI_d6_H3K4me1 Organism: Homo sapiens Source name: don74 RPMI d6 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262959/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004226 Sample Accession: GSM2262959 ID: 302262959 17239. LPS_R_rep2_H3K27me3 Organism: Homo sapiens Source name: LPS R rep2 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262958/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004225 Sample Accession: GSM2262958 ID: 302262958 17240. BG_d6_H3K9me3 Organism: Homo sapiens Source name: BG d6 H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262957/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004224 Sample Accession: GSM2262957 ID: 302262957 17241. LPS_d6_rep1_H3K27ac Organism: Homo sapiens Source name: LPS d6 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262956/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004223 Sample Accession: GSM2262956 ID: 302262956 17242. BG_1h_rep1_H3K4me3 Organism: Homo sapiens Source name: BG 1h rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262955/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004222 Sample Accession: GSM2262955 ID: 302262955 17243. don73_RPMI_d6_H3K4me1 Organism: Homo sapiens Source name: don73 RPMI d6 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262954/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004221 Sample Accession: GSM2262954 ID: 302262954 17244. LPS_d6_rep2_H3K4me1 Organism: Homo sapiens Source name: LPS d6 rep2 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262953/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004220 Sample Accession: GSM2262953 ID: 302262953 17245. BG_1h_rep2_H3K4me3 Organism: Homo sapiens Source name: BG 1h rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262952/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004219 Sample Accession: GSM2262952 ID: 302262952 17246. RPMI_1h_rep2_H3K4me3 Organism: Homo sapiens Source name: RPMI 1h rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262951/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004218 Sample Accession: GSM2262951 ID: 302262951 17247. LPS_d1_rep1_H3K4me1 Organism: Homo sapiens Source name: LPS d1 rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262950/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004217 Sample Accession: GSM2262950 ID: 302262950 17248. don73_RPMI_d6_H3K27ac Organism: Homo sapiens Source name: don73 RPMI d6 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262949/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004216 Sample Accession: GSM2262949 ID: 302262949 17249. RPMI_4h_rep1_H3K4me1 Organism: Homo sapiens Source name: RPMI 4h rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262948/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004215 Sample Accession: GSM2262948 ID: 302262948 17250. RPMI_d7_rep1_H3K4me3 Organism: Homo sapiens Source name: RPMI d7 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262947/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004214 Sample Accession: GSM2262947 ID: 302262947 17251. don74_LPS_d6_co_iBET_H3K4me1 Organism: Homo sapiens Source name: don74 LPS d6 co iBET H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262946/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004213 Sample Accession: GSM2262946 ID: 302262946 17252. LPS_d7_rep1_H3K27ac Organism: Homo sapiens Source name: LPS d7 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262945/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004212 Sample Accession: GSM2262945 ID: 302262945 17253. BG_4h_rep2_H3K27ac Organism: Homo sapiens Source name: BG 4h rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262944/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004211 Sample Accession: GSM2262944 ID: 302262944 17254. RPMI_1h_rep1_H3K4me1 Organism: Homo sapiens Source name: RPMI 1h rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262943/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004210 Sample Accession: GSM2262943 ID: 302262943 17255. RPMI_R_H3K9me3 Organism: Homo sapiens Source name: RPMI R H3K9me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262942/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004209 Sample Accession: GSM2262942 ID: 302262942 17256. LPS_1h_rep1_H3K4me1 Organism: Homo sapiens Source name: LPS 1h rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262941/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004208 Sample Accession: GSM2262941 ID: 302262941 17257. RPMI_d6_rep1_H3K4me3 Organism: Homo sapiens Source name: RPMI d6 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262940/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004207 Sample Accession: GSM2262940 ID: 302262940 17258. LPS_R_rep1_H3K27me3 Organism: Homo sapiens Source name: LPS R rep1 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262939/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004206 Sample Accession: GSM2262939 ID: 302262939 17259. BG_4h_rep1_H3K27ac Organism: Homo sapiens Source name: BG 4h rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262938/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004205 Sample Accession: GSM2262938 ID: 302262938 17260. BG_d1_rep2_H3K27ac Organism: Homo sapiens Source name: BG d1 rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262937/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004204 Sample Accession: GSM2262937 ID: 302262937 17261. d0_rep2_H3K4me3 Organism: Homo sapiens Source name: d0 rep2 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262936/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004203 Sample Accession: GSM2262936 ID: 302262936 17262. LPS_d1_rep2_H3K27ac Organism: Homo sapiens Source name: LPS d1 rep2 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262935/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004202 Sample Accession: GSM2262935 ID: 302262935 17263. LPS_d1_rep1_H3K4me3 Organism: Homo sapiens Source name: LPS d1 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262934/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004201 Sample Accession: GSM2262934 ID: 302262934 17264. LPS_d1_rep1_H3K27ac Organism: Homo sapiens Source name: LPS d1 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262933/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004200 Sample Accession: GSM2262933 ID: 302262933 17265. BG_d6_rep1_H3K27ac Organism: Homo sapiens Source name: BG d6 rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262932/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004199 Sample Accession: GSM2262932 ID: 302262932 17266. LPS_d1_H3K27me3 Organism: Homo sapiens Source name: LPS d1 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262931/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004198 Sample Accession: GSM2262931 ID: 302262931 17267. BG_R_rep1_H3K27me3 Organism: Homo sapiens Source name: BG R rep1 H3K27me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004197 Sample Accession: GSM2262930 ID: 302262930 17268. don74_LPS_d6_co_iBET_H3K27ac Organism: Homo sapiens Source name: don74 LPS d6 co iBET H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004196 Sample Accession: GSM2262929 ID: 302262929 17269. don73_LPS_d6_H3K4me1 Organism: Homo sapiens Source name: don73 LPS d6 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004195 Sample Accession: GSM2262928 ID: 302262928 17270. BG_4h_rep1_H3K4me3 Organism: Homo sapiens Source name: BG 4h rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004194 Sample Accession: GSM2262927 ID: 302262927 17271. RPMI_1h_rep1_H3K4me3 Organism: Homo sapiens Source name: RPMI 1h rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262926/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004193 Sample Accession: GSM2262926 ID: 302262926 17272. BG_d7_rep1_H3K4me3 Organism: Homo sapiens Source name: BG d7 rep1 H3K4me3 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004192 Sample Accession: GSM2262925 ID: 302262925 17273. BG_1h_rep1_H3K4me1 Organism: Homo sapiens Source name: BG 1h rep1 H3K4me1 Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004191 Sample Accession: GSM2262924 ID: 302262924 17274. LPS_1h_rep1_H3K27ac Organism: Homo sapiens Source name: LPS 1h rep1 H3K27ac Platform: GPL11154 Series: GSE85245 GSE85246 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004190 Sample Accession: GSM2262923 ID: 302262923 17275. Rescue_LPS_BGd2_d6_10653 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262914/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004185 Sample Accession: GSM2262914 ID: 302262914 17276. Rescue_LPS_BGd2_d6_10645 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004184 Sample Accession: GSM2262913 ID: 302262913 17277. Rescue_LPS_BGd2_Restim_10654 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262912/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004183 Sample Accession: GSM2262912 ID: 302262912 17278. Rescue_LPS_BGd2_Restim_10646 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262911/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004182 Sample Accession: GSM2262911 ID: 302262911 17279. RPMI_d6_Restim_don70_10648 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262910/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004181 Sample Accession: GSM2262910 ID: 302262910 17280. RPMI_d6_don70_10647 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262909/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004180 Sample Accession: GSM2262909 ID: 302262909 17281. RPMI_d6_Restim_9246 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262908/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004179 Sample Accession: GSM2262908 ID: 302262908 17282. RPMI_d6_Restim_8754 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262907/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004178 Sample Accession: GSM2262907 ID: 302262907 17283. RPMI_d6_Restim_8749 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262906/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004177 Sample Accession: GSM2262906 ID: 302262906 17284. RPMI_d6_9243 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262905/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004176 Sample Accession: GSM2262905 ID: 302262905 17285. RPMI_d6_8752 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004175 Sample Accession: GSM2262904 ID: 302262904 17286. RPMI_d6_8746 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004174 Sample Accession: GSM2262903 ID: 302262903 17287. RPMI_d6_6718 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004173 Sample Accession: GSM2262902 ID: 302262902 17288. RPMI_d6_6095 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004172 Sample Accession: GSM2262901 ID: 302262901 17289. RPMI_d1_6715 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262900/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004171 Sample Accession: GSM2262900 ID: 302262900 17290. RPMI_d1_6092 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262899/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004170 Sample Accession: GSM2262899 ID: 302262899 17291. RPMI_4h_don73_10834 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262898/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004169 Sample Accession: GSM2262898 ID: 302262898 17292. RPMI_4h_6712 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262897/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004168 Sample Accession: GSM2262897 ID: 302262897 17293. RPMI_4h_6089 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262896/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004167 Sample Accession: GSM2262896 ID: 302262896 17294. RPMI_1h_6709 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262895/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004166 Sample Accession: GSM2262895 ID: 302262895 17295. RPMI_1h_6086 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262894/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004165 Sample Accession: GSM2262894 ID: 302262894 17296. Monocyte_d0_don73_10833 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262893/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004164 Sample Accession: GSM2262893 ID: 302262893 17297. Monocyte_d0_IBET_9885 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262892/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004163 Sample Accession: GSM2262892 ID: 302262892 17298. Monocyte_d0_6708 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262891/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004162 Sample Accession: GSM2262891 ID: 302262891 17299. Monocyte_d0_6085 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262890/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004161 Sample Accession: GSM2262890 ID: 302262890 17300. LPSthenIBET_d6_Restim_don70_10832 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262889/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004160 Sample Accession: GSM2262889 ID: 302262889 17301. LPSthenIBET_d6_don70_10831 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262888/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004159 Sample Accession: GSM2262888 ID: 302262888 17302. LPS_d6_Restim_don70_10650 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262887/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004158 Sample Accession: GSM2262887 ID: 302262887 17303. LPS_d6_don70_10649 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262886/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004157 Sample Accession: GSM2262886 ID: 302262886 17304. LPS_d6_Restim_9247 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262885/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004156 Sample Accession: GSM2262885 ID: 302262885 17305. LPS_d6_Restim_8750 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262884/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004155 Sample Accession: GSM2262884 ID: 302262884 17306. LPS_d6_9244 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262883/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004154 Sample Accession: GSM2262883 ID: 302262883 17307. LPS_d6_8747 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262882/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004153 Sample Accession: GSM2262882 ID: 302262882 17308. LPS_d6_6719 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262881/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004152 Sample Accession: GSM2262881 ID: 302262881 17309. LPS_d6_6097 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262880/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004151 Sample Accession: GSM2262880 ID: 302262880 17310. LPS_d1_6716 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262879/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004150 Sample Accession: GSM2262879 ID: 302262879 17311. LPS_d1_6094 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262878/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004149 Sample Accession: GSM2262878 ID: 302262878 17312. LPS_4h_don73_10835 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262877/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004148 Sample Accession: GSM2262877 ID: 302262877 17313. LPS_4h_6713 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262876/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004147 Sample Accession: GSM2262876 ID: 302262876 17314. LPS_4h_6091 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262875/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004146 Sample Accession: GSM2262875 ID: 302262875 17315. LPS_1h_6710 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262874/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004145 Sample Accession: GSM2262874 ID: 302262874 17316. LPS_1h_6088 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262873/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004144 Sample Accession: GSM2262873 ID: 302262873 17317. IBET_d6_RPMI_5uM_Restim_10528 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262872/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004143 Sample Accession: GSM2262872 ID: 302262872 17318. IBET_d6_RPMI_5uM_9878 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262871/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004142 Sample Accession: GSM2262871 ID: 302262871 17319. IBET_d6_RPMI_5uM_10526 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262870/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004141 Sample Accession: GSM2262870 ID: 302262870 17320. IBET_d6_RPMI_1uM_9877 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262869/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004140 Sample Accession: GSM2262869 ID: 302262869 17321. IBET_d6_RPMI_0uM_Restim_10527 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262868/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004139 Sample Accession: GSM2262868 ID: 302262868 17322. IBET_d6_RPMI_0uM_9876 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262867/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004138 Sample Accession: GSM2262867 ID: 302262867 17323. IBET_d6_RPMI_0uM_10525 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262866/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004137 Sample Accession: GSM2262866 ID: 302262866 17324. IBET_d6_LPS_5uM_Restim_10652 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262865/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004136 Sample Accession: GSM2262865 ID: 302262865 17325. IBET_d6_LPS_5uM_Restim_10644 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262864/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004135 Sample Accession: GSM2262864 ID: 302262864 17326. IBET_d6_LPS_5uM_Restim_10532 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262863/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004134 Sample Accession: GSM2262863 ID: 302262863 17327. IBET_d6_LPS_5uM_9881 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262862/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004133 Sample Accession: GSM2262862 ID: 302262862 17328. IBET_d6_LPS_5uM_10651 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262861/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004132 Sample Accession: GSM2262861 ID: 302262861 17329. IBET_d6_LPS_5uM_10643 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262860/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004131 Sample Accession: GSM2262860 ID: 302262860 17330. IBET_d6_LPS_5uM_10530 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262859/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004130 Sample Accession: GSM2262859 ID: 302262859 17331. IBET_d6_LPS_1uM_9880 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262858/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004129 Sample Accession: GSM2262858 ID: 302262858 17332. IBET_d6_LPS_0uM_Restim_10531 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262857/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004128 Sample Accession: GSM2262857 ID: 302262857 17333. IBET_d6_LPS_0uM_9879 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262856/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004127 Sample Accession: GSM2262856 ID: 302262856 17334. IBET_d6_LPS_0uM_10529 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262855/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004126 Sample Accession: GSM2262855 ID: 302262855 17335. IBET_d6_BG_5uM_9884 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262854/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004125 Sample Accession: GSM2262854 ID: 302262854 17336. IBET_d6_BG_1uM_9883 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262853/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004124 Sample Accession: GSM2262853 ID: 302262853 17337. IBET_d6_BG_0uM_9882 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262852/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004123 Sample Accession: GSM2262852 ID: 302262852 17338. IBET_4h_RPMI_don73_10837 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262851/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004122 Sample Accession: GSM2262851 ID: 302262851 17339. BG_d6_Restim_9248 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262850/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004121 Sample Accession: GSM2262850 ID: 302262850 17340. BG_d6_Restim_8755 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262849/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004120 Sample Accession: GSM2262849 ID: 302262849 17341. BG_d6_Restim_8751 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262848/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004119 Sample Accession: GSM2262848 ID: 302262848 17342. BG_d6_9245 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004118 Sample Accession: GSM2262847 ID: 302262847 17343. BG_d6_8753 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262846/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004117 Sample Accession: GSM2262846 ID: 302262846 17344. BG_d6_8748 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262845/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004116 Sample Accession: GSM2262845 ID: 302262845 17345. BG_d6_6720 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262844/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004115 Sample Accession: GSM2262844 ID: 302262844 17346. BG_d6_6096 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262843/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004114 Sample Accession: GSM2262843 ID: 302262843 17347. BG_d1_6717 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262842/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004113 Sample Accession: GSM2262842 ID: 302262842 17348. BG_d1_6093 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262841/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004112 Sample Accession: GSM2262841 ID: 302262841 17349. BG_4h_don73_10836 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262840/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004111 Sample Accession: GSM2262840 ID: 302262840 17350. BG_4h_6714 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262839/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004110 Sample Accession: GSM2262839 ID: 302262839 17351. BG_4h_6090 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262838/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004109 Sample Accession: GSM2262838 ID: 302262838 17352. BG_1h_6711 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262837/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004108 Sample Accession: GSM2262837 ID: 302262837 17353. BG_1h_6087 Organism: Homo sapiens Source name: Adult Human Peripheral Blood Platform: GPL11154 Series: GSE85243 GSE85246 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2262nnn/GSM2262836/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2004107 Sample Accession: GSM2262836 ID: 302262836 17354. Cohort2.P.2 (ATAC-seq) Organism: Mus musculus Source name: Cohort2.P Platform: GPL17021 Series: GSE87527 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2333nnn/GSM2333271/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2202943 Sample Accession: GSM2333271 ID: 302333271 17355. Cohort2.P.1 (ATAC-seq) Organism: Mus musculus Source name: Cohort2.P Platform: GPL17021 Series: GSE87527 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2333nnn/GSM2333270/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2202942 Sample Accession: GSM2333270 ID: 302333270 17356. Cohort2.G.2 (ATAC-seq) Organism: Mus musculus Source name: Cohort2.G Platform: GPL17021 Series: GSE87527 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2333nnn/GSM2333269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2202941 Sample Accession: GSM2333269 ID: 302333269 17357. Cohort2.G.1 (ATAC-seq) Organism: Mus musculus Source name: Cohort2.G Platform: GPL17021 Series: GSE87527 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2333nnn/GSM2333268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2202940 Sample Accession: GSM2333268 ID: 302333268 17358. ATAC-seq Mitosis rep2 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL17021 Series: GSE85184 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259904/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2000050 Sample Accession: GSM2259904 ID: 302259904 17359. ATAC-seq Mitosis rep1 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL17021 Series: GSE85184 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259903/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2000049 Sample Accession: GSM2259903 ID: 302259903 17360. ATAC-seq Asynchronous rep2 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL17021 Series: GSE85184 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259902/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2000048 Sample Accession: GSM2259902 ID: 302259902 17361. ATAC-seq Asynchronous rep1 Organism: Mus musculus Source name: Embryonic stem cells Platform: GPL17021 Series: GSE85184 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2259nnn/GSM2259901/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2000047 Sample Accession: GSM2259901 ID: 302259901 17362. BPDCN Patient-1 ATAC-Seq Organism: Homo sapiens Source name: BPDCN Patient-1 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243041/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962082 Sample Accession: GSM2243041 ID: 302243041 17363. cDCs Donor-2 ATAC-Seq Organism: Homo sapiens Source name: cDCs Donor-2 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962081 Sample Accession: GSM2243040 ID: 302243040 17364. pDCs Donor-2 ATAC-Seq Organism: Homo sapiens Source name: pDCs Donor-2 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243039/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962080 Sample Accession: GSM2243039 ID: 302243039 17365. cDCs Donor-1 ATAC-Seq Organism: Homo sapiens Source name: cDCs Donor-1 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243038/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962079 Sample Accession: GSM2243038 ID: 302243038 17366. pDCs Donor-1 ATAC-Seq Organism: Homo sapiens Source name: pDCs Donor-1 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243037/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962078 Sample Accession: GSM2243037 ID: 302243037 17367. MOLM-14 ATAC-Seq Organism: Homo sapiens Source name: MOLM-14 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243036/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962077 Sample Accession: GSM2243036 ID: 302243036 17368. HL-60 ATAC-Seq Organism: Homo sapiens Source name: HL-60 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243035/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962076 Sample Accession: GSM2243035 ID: 302243035 17369. Gen2.2 ATAC-Seq Organism: Homo sapiens Source name: Gen2.2 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243034/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962075 Sample Accession: GSM2243034 ID: 302243034 17370. Cal-1 ATAC-Seq Organism: Homo sapiens Source name: Cal-1 Platform: GPL18573 Series: GSE84623 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2243nnn/GSM2243033/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1962074 Sample Accession: GSM2243033 ID: 302243033 17371. ATAC_NFD+SOX4shRNA_4DPT Organism: Homo sapiens Source name: Fetal Lung Fibroblast Platform: GPL16791 Series: GSE75912 GSE80639 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2132nnn/GSM2132062/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1725547 Sample Accession: GSM2132062 ID: 302132062 17372. ATAC_NFD_4DPT Organism: Homo sapiens Source name: Fetal Lung Fibroblast Platform: GPL16791 Series: GSE75912 GSE80639 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2132nnn/GSM2132061/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1725546 Sample Accession: GSM2132061 ID: 302132061 17373. ATAC_N_4DPT Organism: Homo sapiens Source name: Fetal Lung Fibroblast Platform: GPL16791 Series: GSE75912 GSE80639 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2132nnn/GSM2132060/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1725545 Sample Accession: GSM2132060 ID: 302132060 17374. ATAC_MRC5_4DPT Organism: Homo sapiens Source name: Fetal Lung Fibroblast Platform: GPL16791 Series: GSE75912 GSE80639 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2132nnn/GSM2132059/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1725544 Sample Accession: GSM2132059 ID: 302132059 17375. ATAC-linc1319-pAS-2kb-151214-S1-B4-Rep2 Organism: Mus musculus Source name: F1 2-1 129/Castaneus Female mESCs Platform: GPL17021 Series: GSE85798 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2284nnn/GSM2284178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2032492 Sample Accession: GSM2284178 ID: 302284178 17376. ATAC-linc1319-pAS-2kb-151214-S1-B4-Rep1 Organism: Mus musculus Source name: F1 2-1 129/Castaneus Female mESCs Platform: GPL17021 Series: GSE85798 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2284nnn/GSM2284177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2032491 Sample Accession: GSM2284177 ID: 302284177 17377. ATAC-linc1319-PromoterDeletion-141107-C1-Rep2 Organism: Mus musculus Source name: F1 2-1 129/Castaneus Female mESCs Platform: GPL17021 Series: GSE85798 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2284nnn/GSM2284176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2032490 Sample Accession: GSM2284176 ID: 302284176 17378. ATAC-linc1319-PromoterDeletion-141107-C1-Rep1 Organism: Mus musculus Source name: F1 2-1 129/Castaneus Female mESCs Platform: GPL17021 Series: GSE85798 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2284nnn/GSM2284175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2032489 Sample Accession: GSM2284175 ID: 302284175 17379. ATAC-linc1319-5ssDeletion-151101-F10-Rep2 Organism: Mus musculus Source name: F1 2-1 129/Castaneus Female mESCs Platform: GPL17021 Series: GSE85798 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2284nnn/GSM2284174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2032488 Sample Accession: GSM2284174 ID: 302284174 17380. ATAC-linc1319-5ssDeletion-151101-F10-Rep1 Organism: Mus musculus Source name: F1 2-1 129/Castaneus Female mESCs Platform: GPL17021 Series: GSE85798 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2284nnn/GSM2284173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2032487 Sample Accession: GSM2284173 ID: 302284173 17381. ATAC-ControlClone-Rep2 Organism: Mus musculus Source name: F1 2-1 129/Castaneus Female mESCs Platform: GPL17021 Series: GSE85798 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2284nnn/GSM2284172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2032486 Sample Accession: GSM2284172 ID: 302284172 17382. ATAC-ControlClone-Rep1 Organism: Mus musculus Source name: F1 2-1 129/Castaneus Female mESCs Platform: GPL17021 Series: GSE85798 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2284nnn/GSM2284171/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2032485 Sample Accession: GSM2284171 ID: 302284171 17383. EL4_Rep2 Organism: Mus musculus Source name: T Cells (EL4 Line) Platform: GPL13112 Series: GSE87646 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2337nnn/GSM2337213/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212531 Sample Accession: GSM2337213 ID: 302337213 17384. EL4_Rep1 Organism: Mus musculus Source name: T Cells (EL4 Line) Platform: GPL13112 Series: GSE87646 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2337nnn/GSM2337212/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212530 Sample Accession: GSM2337212 ID: 302337212 17385. CD8_Chronic-d27_Rep2 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212529 Sample Accession: GSM2337211 ID: 302337211 17386. CD8_Chronic-d27_Rep1 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2337nnn/GSM2337210/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212528 Sample Accession: GSM2337210 ID: 302337210 17387. CD8_Chronic-d8_Rep2 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212527 Sample Accession: GSM2337209 ID: 302337209 17388. CD8_Chronic-d8_Rep1 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2337nnn/GSM2337208/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212526 Sample Accession: GSM2337208 ID: 302337208 17389. CD8_Acute-d27_Rep2 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212525 Sample Accession: GSM2337207 ID: 302337207 17390. CD8_Acute-d27_Rep1 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2337nnn/GSM2337206/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212524 Sample Accession: GSM2337206 ID: 302337206 17391. CD8_Acute-d8_Rep2 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212523 Sample Accession: GSM2337205 ID: 302337205 17392. CD8_Acute-d8_Rep1 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2337nnn/GSM2337204/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212522 Sample Accession: GSM2337204 ID: 302337204 17393. CD8_Naive_Rep2 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212521 Sample Accession: GSM2337203 ID: 302337203 17394. CD8_Naive_Rep1 Organism: Mus musculus Source name: CD8+ T Cells Platform: GPL13112 Series: GSE87646 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2337nnn/GSM2337202/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2212520 Sample Accession: GSM2337202 ID: 302337202 17395. ATAC-Seq.Zscan4+_3 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469940 Sample Accession: GSM1966791 ID: 301966791 17396. ATAC-Seq.Zscan4+_2 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469939 Sample Accession: GSM1966790 ID: 301966790 17397. ATAC-Seq.Zscan4+_1 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469938 Sample Accession: GSM1966789 ID: 301966789 17398. ATAC-Seq.neg_3 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469937 Sample Accession: GSM1966788 ID: 301966788 17399. ATAC-Seq.neg_2 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469936 Sample Accession: GSM1966787 ID: 301966787 17400. ATAC-Seq.neg_1 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469935 Sample Accession: GSM1966786 ID: 301966786 17401. ATAC-Seq.MuERVL+_Zscan4+_3 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469934 Sample Accession: GSM1966785 ID: 301966785 17402. ATAC-Seq.MuERVL+_Zscan4+_2 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469933 Sample Accession: GSM1966784 ID: 301966784 17403. ATAC-Seq.MuERVL+_Zscan4+_1 Organism: Mus musculus Source name: E14 embryonic stem cell Platform: GPL13112 Series: GSE75751 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1469932 Sample Accession: GSM1966783 ID: 301966783 17404. ATAC-seq wt EpiSCs Chiron48h Organism: Mus musculus Source name: EpiSCs Platform: GPL19057 Series: GSE81203 FTP download: GEO (BEDGRAPH, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2144nnn/GSM2144636/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1745507 Sample Accession: GSM2144636 ID: 302144636 17405. ATAC-seq wt EpiSCs Organism: Mus musculus Source name: EpiSCs Platform: GPL19057 Series: GSE81203 FTP download: GEO (BEDGRAPH, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2144nnn/GSM2144635/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1745506 Sample Accession: GSM2144635 ID: 302144635 17406. ATAC-seq wt E7.5posterior Organism: Mus musculus Source name: E7.5 posterior part mouse embryo Platform: GPL19057 Series: GSE81203 FTP download: GEO (BEDGRAPH, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2144nnn/GSM2144634/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1745505 Sample Accession: GSM2144634 ID: 302144634 17407. ATAC-seq wt E7.2 rep2 Organism: Mus musculus Source name: E7.2 mouse embryo Platform: GPL19057 Series: GSE81203 FTP download: GEO (BEDGRAPH, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2144nnn/GSM2144633/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1745504 Sample Accession: GSM2144633 ID: 302144633 17408. ATAC-seq wt E7.2 rep1 Organism: Mus musculus Source name: E7.2 mouse embryo Platform: GPL19057 Series: GSE81203 FTP download: GEO (BEDGRAPH, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2144nnn/GSM2144632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1745503 Sample Accession: GSM2144632 ID: 302144632 17409. ATAC-seq wt E6.0 rep2 Organism: Mus musculus Source name: E6.0 mouse embryo Platform: GPL19057 Series: GSE81203 FTP download: GEO (BEDGRAPH, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2144nnn/GSM2144631/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1745502 Sample Accession: GSM2144631 ID: 302144631 17410. ATAC-seq wt E6.0 rep1 Organism: Mus musculus Source name: E6.0 mouse embryo Platform: GPL19057 Series: GSE81203 FTP download: GEO (BEDGRAPH, BW, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2144nnn/GSM2144630/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1745501 Sample Accession: GSM2144630 ID: 302144630 17411. WT_2 ATAC-Seq Organism: Mus musculus Source name: Sorted Neutrophils Platform: GPL19057 Series: GSE85071 GSE85073 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1993700 Sample Accession: GSM2257330 ID: 302257330 17412. WT_1 ATAC-Seq Organism: Mus musculus Source name: Sorted Neutrophils Platform: GPL19057 Series: GSE85071 GSE85073 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1993699 Sample Accession: GSM2257329 ID: 302257329 17413. KO_2 ATAC-Seq Organism: Mus musculus Source name: Sorted Neutrophils Platform: GPL19057 Series: GSE85071 GSE85073 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1993698 Sample Accession: GSM2257328 ID: 302257328 17414. KO_1 ATAC-Seq Organism: Mus musculus Source name: Sorted Neutrophils Platform: GPL19057 Series: GSE85071 GSE85073 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1993697 Sample Accession: GSM2257327 ID: 302257327 17415. orer_atac_2 Organism: Drosophila melanogaster Source name: Oregon-R embryos Platform: GPL17275 Series: GSE68983 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2285nnn/GSM2285340/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2035276 Sample Accession: GSM2285340 ID: 302285340 17416. orer_atac_1 Organism: Drosophila melanogaster Source name: Oregon-R embryos Platform: GPL17275 Series: GSE68983 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2285nnn/GSM2285339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX2035275 Sample Accession: GSM2285339 ID: 302285339 17417. Lgr5_Epcam+_paired-end Organism: Mus musculus Source name: hair follicle Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782576/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079546 Sample Accession: GSM1782576 ID: 301782576 17418. Lgr5_Epcam+_single-end Organism: Mus musculus Source name: hair follicle Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782575/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079545 Sample Accession: GSM1782575 ID: 301782575 17419. Lgr5_epcam-_paired-end Organism: Mus musculus Source name: hair follicle Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079544 Sample Accession: GSM1782574 ID: 301782574 17420. Lgr5_epcam-_single-end Organism: Mus musculus Source name: hair follicle Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079543 Sample Accession: GSM1782573 ID: 301782573 17421. Lgr5_epcam+_2_paired-end Organism: Mus musculus Source name: hair follicle Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079542 Sample Accession: GSM1782572 ID: 301782572 17422. Lgr5_epcam+_2_single-end Organism: Mus musculus Source name: hair follicle Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079541 Sample Accession: GSM1782571 ID: 301782571 17423. K14_Epcam+_paired-end Organism: Mus musculus Source name: interfollicular epidermis Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079538 Sample Accession: GSM1782568 ID: 301782568 17424. K14_Epcam+_single-end Organism: Mus musculus Source name: interfollicular epidermis Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079537 Sample Accession: GSM1782567 ID: 301782567 17425. IFE_normal_paired-end Organism: Mus musculus Source name: interfollicular epidermis Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782566/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079536 Sample Accession: GSM1782566 ID: 301782566 17426. IFE_normal_single-end Organism: Mus musculus Source name: interfollicular epidermis Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782565/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079535 Sample Accession: GSM1782565 ID: 301782565 17427. HF_normal_paired-end Organism: Mus musculus Source name: hair follicle Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782564/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079534 Sample Accession: GSM1782564 ID: 301782564 17428. HF_normal_single-end Organism: Mus musculus Source name: hair follicle Platform: GPL13112 Series: GSE70474 GSE71621 FTP download: GEO (TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782563/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1079533 Sample Accession: GSM1782563 ID: 301782563 17429. C57BL/6 mice Organism: Mus musculus Source name: Cortical thymic epithelial cells Platform: GPL17021 Series: GSE75219 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1945nnn/GSM1945913/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1439632 Sample Accession: GSM1945913 ID: 301945913 17430. khES3 with 100 ng/ml bFGF Organism: Homo sapiens Source name: embryonic stem cells Platform: GPL16791 Series: GSE74967 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939275/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430077 Sample Accession: GSM1939275 ID: 301939275 17431. khES3 with 4 ng/ml bFGF Organism: Homo sapiens Source name: embryonic stem cells Platform: GPL16791 Series: GSE74967 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939274/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430076 Sample Accession: GSM1939274 ID: 301939274 17432. 784D1 atac Organism: Homo sapiens Source name: induced pluripotent stem cells Platform: GPL16791 Series: GSE74967 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939273/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430075 Sample Accession: GSM1939273 ID: 301939273 17433. 7KE2 atac Organism: Homo sapiens Source name: induced pluripotent stem cells Platform: GPL16791 Series: GSE74967 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939272/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430074 Sample Accession: GSM1939272 ID: 301939272 17434. E12.5 YS progenitors ATAC Organism: Mus musculus Source name: E12.5 US progenitors ATAC Platform: GPL19057 Series: GSE79816 GSE79819 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2104nnn/GSM2104289/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1672752 Sample Accession: GSM2104289 ID: 302104289 17435. E12.5 microglia ATAC Organism: Mus musculus Source name: E12.5 microglia B ATAC Platform: GPL19057 Series: GSE79816 GSE79819 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2104nnn/GSM2104288/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1672751 Sample Accession: GSM2104288 ID: 302104288 17436. Pre-microglia ATAC Organism: Mus musculus Source name: Pre-microglia ATAC Platform: GPL19057 Series: GSE79816 GSE79819 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2104nnn/GSM2104287/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1672750 Sample Accession: GSM2104287 ID: 302104287 17437. Adult microglia ATAC Organism: Mus musculus Source name: Adult microglia ATAC Platform: GPL19057 Series: GSE79816 GSE79819 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2104nnn/GSM2104286/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1672749 Sample Accession: GSM2104286 ID: 302104286 17438. ATAC_SEQ_KO_NKT Organism: Mus musculus Source name: NKT cells Platform: GPL17021 Series: GSE84238 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2230nnn/GSM2230004/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1924760 Sample Accession: GSM2230004 ID: 302230004 17439. ATAC_SEQ_WT_NKT Organism: Mus musculus Source name: NKT cells Platform: GPL17021 Series: GSE84238 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2230nnn/GSM2230003/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1924759 Sample Accession: GSM2230003 ID: 302230003 17440. ATAC-seq from Mael-KD rep2 Organism: Drosophila melanogaster Source name: Mael-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760722 Sample Accession: GSM2152450 ID: 302152450 17441. ATAC-seq from HP1a-KD rep2 Organism: Drosophila melanogaster Source name: HP1a-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760721 Sample Accession: GSM2152449 ID: 302152449 17442. ATAC-seq from H1-KD rep2 Organism: Drosophila melanogaster Source name: H1-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760720 Sample Accession: GSM2152448 ID: 302152448 17443. ATAC-seq from Piwi-KD rep2 Organism: Drosophila melanogaster Source name: Piwi-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760719 Sample Accession: GSM2152447 ID: 302152447 17444. ATAC-seq from Control-KD rep2 Organism: Drosophila melanogaster Source name: EGFP-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760718 Sample Accession: GSM2152446 ID: 302152446 17445. ATAC-seq from Mael-KD rep1 Organism: Drosophila melanogaster Source name: Mael-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760717 Sample Accession: GSM2152445 ID: 302152445 17446. ATAC-seq from HP1a-KD rep1 Organism: Drosophila melanogaster Source name: HP1a-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760716 Sample Accession: GSM2152444 ID: 302152444 17447. ATAC-seq from H1-KD rep1 Organism: Drosophila melanogaster Source name: H1-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760715 Sample Accession: GSM2152443 ID: 302152443 17448. ATAC-seq from Piwi-KD rep1 Organism: Drosophila melanogaster Source name: Piwi-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760714 Sample Accession: GSM2152442 ID: 302152442 17449. ATAC-seq from Control-KD rep1 Organism: Drosophila melanogaster Source name: EGFP-KD OSC Platform: GPL16479 Series: GSE81434 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1760713 Sample Accession: GSM2152441 ID: 302152441 17450. ATAC-seq for CLL patient 5277, sample 1-5-57269 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148549/ Sample Accession: GSM2148549 ID: 302148549 17451. ATAC-seq for CLL patient 5263, sample 1-5-60462 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148547/ Sample Accession: GSM2148547 ID: 302148547 17452. ATAC-seq for CLL patient 5229, sample 1-5-54145 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148545/ Sample Accession: GSM2148545 ID: 302148545 17453. ATAC-seq for CLL patient 5204, sample 1-5-58365 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148543/ Sample Accession: GSM2148543 ID: 302148543 17454. ATAC-seq for CLL patient 5199, sample 1-5-50525 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148541/ Sample Accession: GSM2148541 ID: 302148541 17455. ATAC-seq for CLL patient 5170, sample 1-5-55531 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148540/ Sample Accession: GSM2148540 ID: 302148540 17456. ATAC-seq for CLL patient 5147, sample 1-5-48105 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148538/ Sample Accession: GSM2148538 ID: 302148538 17457. ATAC-seq for CLL patient 5129, sample 1-5-52010 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148536/ Sample Accession: GSM2148536 ID: 302148536 17458. ATAC-seq for CLL patient 5048, sample 1-5-41821 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148535/ Sample Accession: GSM2148535 ID: 302148535 17459. ATAC-seq for CLL patient 5044, sample 1-5-42061 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148533/ Sample Accession: GSM2148533 ID: 302148533 17460. ATAC-seq for CLL patient 5019, sample 1-5-39146 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148531/ Sample Accession: GSM2148531 ID: 302148531 17461. ATAC-seq for CLL patient 4989, sample 1-5-54251 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148529/ Sample Accession: GSM2148529 ID: 302148529 17462. ATAC-seq for CLL patient 4963, sample 1-5-37169 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148527/ Sample Accession: GSM2148527 ID: 302148527 17463. ATAC-seq for CLL patient 4802, sample 1-5-39590 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148526/ Sample Accession: GSM2148526 ID: 302148526 17464. ATAC-seq for CLL patient 4784, sample 1-5-52834 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148524/ Sample Accession: GSM2148524 ID: 302148524 17465. ATAC-seq for CLL patient 4747, sample 1-5-64839 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148522/ Sample Accession: GSM2148522 ID: 302148522 17466. ATAC-seq for CLL patient 4668, sample 1-5-2135 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148520/ Sample Accession: GSM2148520 ID: 302148520 17467. ATAC-seq for CLL patient 4668, sample 1-5-1518 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148518/ Sample Accession: GSM2148518 ID: 302148518 17468. ATAC-seq for CLL patient 4621, sample 1-5-39762 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148516/ Sample Accession: GSM2148516 ID: 302148516 17469. ATAC-seq for CLL patient 4621, sample 1-5-36904 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148514/ Sample Accession: GSM2148514 ID: 302148514 17470. ATAC-seq for CLL patient 4621, sample 1-5-1674 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148512/ Sample Accession: GSM2148512 ID: 302148512 17471. ATAC-seq for CLL patient 4333, sample 1-5-11319 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148510/ Sample Accession: GSM2148510 ID: 302148510 17472. ATAC-seq for CLL patient 4251, sample 1-5-19509 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148508/ Sample Accession: GSM2148508 ID: 302148508 17473. ATAC-seq for CLL patient 4251, sample 1-5-12508 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148506/ Sample Accession: GSM2148506 ID: 302148506 17474. ATAC-seq for CLL patient 4189, sample 1-5-48773 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148504/ Sample Accession: GSM2148504 ID: 302148504 17475. ATAC-seq for CLL patient 4102, sample 1-5-47077 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148502/ Sample Accession: GSM2148502 ID: 302148502 17476. ATAC-seq for CLL patient 4102, sample 1-5-41533 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148500/ Sample Accession: GSM2148500 ID: 302148500 17477. ATAC-seq for CLL patient 4102, sample 1-5-12088 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148499/ Sample Accession: GSM2148499 ID: 302148499 17478. ATAC-seq for CLL patient 4080, sample 1-5-27302 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148497/ Sample Accession: GSM2148497 ID: 302148497 17479. ATAC-seq for CLL patient 4078, sample 1-5-7213 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148494/ Sample Accession: GSM2148494 ID: 302148494 17480. ATAC-seq for CLL patient 4078, sample 1-5-1840 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148492/ Sample Accession: GSM2148492 ID: 302148492 17481. ATAC-seq for CLL patient 4034, sample 1-5-47284 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148490/ Sample Accession: GSM2148490 ID: 302148490 17482. ATAC-seq for CLL patient 3980, sample 1-5-49011 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148488/ Sample Accession: GSM2148488 ID: 302148488 17483. ATAC-seq for CLL patient 3943, sample 1-5-55787 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148486/ Sample Accession: GSM2148486 ID: 302148486 17484. ATAC-seq for CLL patient 3873, sample 1-5-606 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148484/ Sample Accession: GSM2148484 ID: 302148484 17485. ATAC-seq for CLL patient 3823, sample 1-5-51124 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148482/ Sample Accession: GSM2148482 ID: 302148482 17486. ATAC-seq for CLL patient 3823, sample 1-5-12816 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148480/ Sample Accession: GSM2148480 ID: 302148480 17487. ATAC-seq for CLL patient 3811, sample 1-5-39729 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148478/ Sample Accession: GSM2148478 ID: 302148478 17488. ATAC-seq for CLL patient 3756, sample 1-5-33669 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148476/ Sample Accession: GSM2148476 ID: 302148476 17489. ATAC-seq for CLL patient 3492, sample 1-5-30784 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148474/ Sample Accession: GSM2148474 ID: 302148474 17490. ATAC-seq for CLL patient 3492, sample 1-5-13203 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148472/ Sample Accession: GSM2148472 ID: 302148472 17491. ATAC-seq for CLL patient 3439, sample 1-5-6735 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148470/ Sample Accession: GSM2148470 ID: 302148470 17492. ATAC-seq for CLL patient 3439, sample 1-5-31907 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148468/ Sample Accession: GSM2148468 ID: 302148468 17493. ATAC-seq for CLL patient 3439, sample 1-5-24904 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148466/ Sample Accession: GSM2148466 ID: 302148466 17494. ATAC-seq for CLL patient 3386, sample 1-5-37411 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148464/ Sample Accession: GSM2148464 ID: 302148464 17495. ATAC-seq for CLL patient 3263, sample 1-5-34818 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148462/ Sample Accession: GSM2148462 ID: 302148462 17496. ATAC-seq for CLL patient 3263, sample 1-5-21872 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148460/ Sample Accession: GSM2148460 ID: 302148460 17497. ATAC-seq for CLL patient 3240, sample 1-5-47651 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148458/ Sample Accession: GSM2148458 ID: 302148458 17498. ATAC-seq for CLL patient 3215, sample 1-5-6223 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148457/ Sample Accession: GSM2148457 ID: 302148457 17499. ATAC-seq for CLL patient 3215, sample 1-5-48685 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148455/ Sample Accession: GSM2148455 ID: 302148455 17500. ATAC-seq for CLL patient 3215, sample 1-5-34760 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148453/ Sample Accession: GSM2148453 ID: 302148453 17501. ATAC-seq for CLL patient 3215, sample 1-5-30597 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148451/ Sample Accession: GSM2148451 ID: 302148451 17502. ATAC-seq for CLL patient 3156, sample 1-5-27542 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148449/ Sample Accession: GSM2148449 ID: 302148449 17503. ATAC-seq for CLL patient 3156, sample 1-5-20444 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148447/ Sample Accession: GSM2148447 ID: 302148447 17504. ATAC-seq for CLL patient 3142, sample 1-5-55865 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148445/ Sample Accession: GSM2148445 ID: 302148445 17505. ATAC-seq for CLL patient 3069, sample 1-5-6294 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148443/ Sample Accession: GSM2148443 ID: 302148443 17506. ATAC-seq for CLL patient 3069, sample 1-5-27496 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148441/ Sample Accession: GSM2148441 ID: 302148441 17507. ATAC-seq for CLL patient 2977, sample 1-5-7923 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148439/ Sample Accession: GSM2148439 ID: 302148439 17508. ATAC-seq for CLL patient 2977, sample 1-5-54424 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148437/ Sample Accession: GSM2148437 ID: 302148437 17509. ATAC-seq for CLL patient 2938, sample 1-5-56744 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148435/ Sample Accession: GSM2148435 ID: 302148435 17510. ATAC-seq for CLL patient 2938, sample 1-5-46799 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148433/ Sample Accession: GSM2148433 ID: 302148433 17511. ATAC-seq for CLL patient 2938, sample 1-5-21490 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148431/ Sample Accession: GSM2148431 ID: 302148431 17512. ATAC-seq for CLL patient 2938, sample 1-5-20335 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148429/ Sample Accession: GSM2148429 ID: 302148429 17513. ATAC-seq for CLL patient 2938, sample 1-5-12095 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148427/ Sample Accession: GSM2148427 ID: 302148427 17514. ATAC-seq for CLL patient 2886, sample 1-5-46979 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148425/ Sample Accession: GSM2148425 ID: 302148425 17515. ATAC-seq for CLL patient 2886, sample 1-5-34218 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148423/ Sample Accession: GSM2148423 ID: 302148423 17516. ATAC-seq for CLL patient 2613, sample 1-5-6916 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148422/ Sample Accession: GSM2148422 ID: 302148422 17517. ATAC-seq for CLL patient 2613, sample 1-5-2683 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148420/ Sample Accession: GSM2148420 ID: 302148420 17518. ATAC-seq for CLL patient 2483, sample 1-5-39392 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148418/ Sample Accession: GSM2148418 ID: 302148418 17519. ATAC-seq for CLL patient 2459, sample 1-5-6988 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148415/ Sample Accession: GSM2148415 ID: 302148415 17520. ATAC-seq for CLL patient 2459, sample 1-5-34053 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148413/ Sample Accession: GSM2148413 ID: 302148413 17521. ATAC-seq for CLL patient 2132, sample 1-5-29612 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148411/ Sample Accession: GSM2148411 ID: 302148411 17522. ATAC-seq for CLL patient 2132, sample 1-5-20842 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148409/ Sample Accession: GSM2148409 ID: 302148409 17523. ATAC-seq for CLL patient 1781, sample 1-5-1614 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148407/ Sample Accession: GSM2148407 ID: 302148407 17524. ATAC-seq for CLL patient 1303, sample 1-5-35065 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148405/ Sample Accession: GSM2148405 ID: 302148405 17525. ATAC-seq for CLL patient 1125, sample 1-5-7260 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148403/ Sample Accession: GSM2148403 ID: 302148403 17526. ATAC-seq for CLL patient 1125, sample 1-5-33070 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148401/ Sample Accession: GSM2148401 ID: 302148401 17527. ATAC-seq for CLL patient 981, sample 1-5-42480 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148399/ Sample Accession: GSM2148399 ID: 302148399 17528. ATAC-seq for CLL patient 981, sample 1-5-11335 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148397/ Sample Accession: GSM2148397 ID: 302148397 17529. ATAC-seq for CLL patient 680, sample 1-5-33943 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148395/ Sample Accession: GSM2148395 ID: 302148395 17530. ATAC-seq for CLL patient 680, sample 1-5-10787 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148393/ Sample Accession: GSM2148393 ID: 302148393 17531. ATAC-seq for CLL patient 653, sample 1-5-6768 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148392/ Sample Accession: GSM2148392 ID: 302148392 17532. ATAC-seq for CLL patient 653, sample 1-5-45881 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148390/ Sample Accession: GSM2148390 ID: 302148390 17533. ATAC-seq for CLL patient 552, sample 1-5-20486 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148388/ Sample Accession: GSM2148388 ID: 302148388 17534. ATAC-seq for CLL patient 552, sample 1-5-12302 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148386/ Sample Accession: GSM2148386 ID: 302148386 17535. ATAC-seq for CLL patient 244, sample 1-5-33025 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148384/ Sample Accession: GSM2148384 ID: 302148384 17536. ATAC-seq for CLL patient 244, sample 1-5-16241 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148382/ Sample Accession: GSM2148382 ID: 302148382 17537. ATAC-seq for CLL patient 50, sample 1-5-35290 Organism: Homo sapiens Source name: Primary peripheral blood mononucleated cells (PBMC) from chronic lymphocytic leukemia patient with high leukemic cell count Platform: GPL21290 Series: GSE81274 FTP download: GEO (BIGWIG, NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2148nnn/GSM2148380/ Sample Accession: GSM2148380 ID: 302148380 17538. ATAC-Seq 50k mESC Organism: Mus musculus Source name: Embryonic stem cell Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1770461 Sample Accession: GSM2156965 ID: 302156965 17539. ATAC-Seq 1k mESC Organism: Mus musculus Source name: Embryonic stem cell Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1770460 Sample Accession: GSM2156964 ID: 302156964 17540. ATAC-Seq ICM rep2 Organism: Mus musculus Source name: Inner cell mass Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2156nnn/GSM2156963/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1770459 Sample Accession: GSM2156963 ID: 302156963 17541. ATAC-Seq 4-cell reciprocal rep2 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2108nnn/GSM2108704/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1680989 Sample Accession: GSM2108704 ID: 302108704 17542. ATAC-Seq 4-cell reciprocal rep1 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2108nnn/GSM2108703/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1680988 Sample Accession: GSM2108703 ID: 302108703 17543. ATAC-Seq early 2-cell alpha amanitin treatment rep2 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2108nnn/GSM2108702/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1680987 Sample Accession: GSM2108702 ID: 302108702 17544. ATAC-Seq ICM rep1 Organism: Mus musculus Source name: Inner cell mass Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933930/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424711 Sample Accession: GSM1933930 ID: 301933930 17545. ATAC-Seq 8-cell rep2 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933929/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424710 Sample Accession: GSM1933929 ID: 301933929 17546. ATAC-Seq 8-cell rep1 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933928/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424709 Sample Accession: GSM1933928 ID: 301933928 17547. ATAC-Seq 4-cell rep2 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933927/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424708 Sample Accession: GSM1933927 ID: 301933927 17548. ATAC-Seq 2-cell rep2 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933925/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424706 Sample Accession: GSM1933925 ID: 301933925 17549. ATAC-Seq 2-cell rep1 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933924/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424705 Sample Accession: GSM1933924 ID: 301933924 17550. ATAC-Seq early 2-cell alpha amanitin treatment rep1 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933923/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424704 Sample Accession: GSM1933923 ID: 301933923 17551. ATAC-Seq early 2-cell rep2 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933922/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424703 Sample Accession: GSM1933922 ID: 301933922 17552. ATAC-Seq early 2-cell rep1 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1933nnn/GSM1933921/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1424702 Sample Accession: GSM1933921 ID: 301933921 17553. ATAC-Seq 200 mESC Organism: Mus musculus Source name: Embryonic stem cell Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX902546 Sample Accession: GSM1625858 ID: 301625858 17554. ATAC-Seq 4-cell rep1 Organism: Mus musculus Source name: Preimplantation embryo Platform: GPL18480 Series: GSE66390 GSE66581 FTP download: GEO (BEDGRAPH) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1625nnn/GSM1625847/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX902535 Sample Accession: GSM1625847 ID: 301625847 17555. Fetal liver Knockout of alpha globin Wild type litter mate replicate 3 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077315/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608874 Sample Accession: GSM2077315 ID: 302077315 17556. Fetal liver Knockout of alpha globin Wild type litter mate replicate 2 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608873 Sample Accession: GSM2077314 ID: 302077314 17557. Fetal liver Knockout of alpha globin regulatory elements R2 and R3 biological replicate 3 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077312/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608871 Sample Accession: GSM2077312 ID: 302077312 17558. Fetal liver Knockout of alpha globin regulatory elements R2 and R3 biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077311/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608870 Sample Accession: GSM2077311 ID: 302077311 17559. Fetal liver Knockout of alpha globin regulatory elements R2 and R3 biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077310/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608869 Sample Accession: GSM2077310 ID: 302077310 17560. Fetal liver Knockout of alpha globin regulatory elements R1 and R2 biological replicate 3 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608868 Sample Accession: GSM2077309 ID: 302077309 17561. Fetal liver Knockout of alpha globin regulatory elements R1 and R2 biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608867 Sample Accession: GSM2077308 ID: 302077308 17562. Fetal liver Knockout of alpha globin regulatory element R4, biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077306/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608865 Sample Accession: GSM2077306 ID: 302077306 17563. Fetal liver Knockout of alpha globin regulatory element R4, biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608864 Sample Accession: GSM2077305 ID: 302077305 17564. Fetal liver Knockout of alpha globin regulatory element Rm, biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608863 Sample Accession: GSM2077304 ID: 302077304 17565. Fetal liver Knockout of alpha globin regulatory element Rm, biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077303/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608862 Sample Accession: GSM2077303 ID: 302077303 17566. Fetal liver Knockout of alpha globin regulatory element R3, biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077302/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608861 Sample Accession: GSM2077302 ID: 302077302 17567. Fetal liver Knockout of alpha globin regulatory element R3, biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608860 Sample Accession: GSM2077301 ID: 302077301 17568. Fetal liver Knockout of alpha globin regulatory element R2, biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608859 Sample Accession: GSM2077300 ID: 302077300 17569. Fetal liver Knockout of alpha globin regulatory element R2, biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608858 Sample Accession: GSM2077299 ID: 302077299 17570. Fetal liver Knockout of alpha globin regulatory element R1, biological replicate 2 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608857 Sample Accession: GSM2077298 ID: 302077298 17571. Fetal liver Knockout of alpha globin regulatory element R1, biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL19057 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608856 Sample Accession: GSM2077297 ID: 302077297 17572. Fetal liver Knockout of alpha globin Wild type litter mate replicate 1 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL16417 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608872 Sample Accession: GSM2077313 ID: 302077313 17573. Fetal liver Knockout of alpha globin regulatory elements R1 and R2 biological replicate 1 [ATAC-seq] Organism: Mus musculus Source name: Erythroid cells Platform: GPL16417 Series: GSE78800 GSE78835 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2077nnn/GSM2077307/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1608866 Sample Accession: GSM2077307 ID: 302077307 17574. SU070-pHSC-140603.trim Organism: Homo sapiens Source name: pHSC Platform: GPL16791 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427879 Sample Accession: GSM1937466 ID: 301937466 17575. SU070-LSC-140603.trim Organism: Homo sapiens Source name: LSC Platform: GPL16791 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427878 Sample Accession: GSM1937465 ID: 301937465 17576. SU070-Leuk-140603.trim Organism: Homo sapiens Source name: Blast Platform: GPL16791 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427876 Sample Accession: GSM1937463 ID: 301937463 17577. ATAC-Seq DKO Act B cell 26276 Organism: Mus musculus Source name: Act B cell Platform: GPL17021 Series: GSE77744 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2058nnn/GSM2058448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1568876 Sample Accession: GSM2058448 ID: 302058448 17578. ATAC-Seq Act B cell 26275 Organism: Mus musculus Source name: Act B cell Platform: GPL17021 Series: GSE77744 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2058nnn/GSM2058447/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1568875 Sample Accession: GSM2058447 ID: 302058447 17579. ATAC-Seq DKO Act B cell 26501 Organism: Mus musculus Source name: Act B cell Platform: GPL17021 Series: GSE77744 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2058nnn/GSM2058446/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1568874 Sample Accession: GSM2058446 ID: 302058446 17580. ATAC-Seq Pre-PB 26500 Organism: Mus musculus Source name: Pre-PB Platform: GPL17021 Series: GSE77744 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2058nnn/GSM2058445/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1568873 Sample Accession: GSM2058445 ID: 302058445 17581. ATAC-Seq Act B cell 26499 Organism: Mus musculus Source name: Act B cell Platform: GPL17021 Series: GSE77744 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2058nnn/GSM2058444/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1568872 Sample Accession: GSM2058444 ID: 302058444 17582. SU654-pHSC-141115 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427918 Sample Accession: GSM1937505 ID: 301937505 17583. SU654-LSC-150120 Organism: Homo sapiens Source name: LSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427917 Sample Accession: GSM1937504 ID: 301937504 17584. SU654-Leuk-141115 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427916 Sample Accession: GSM1937503 ID: 301937503 17585. SU623-pHSC Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427915 Sample Accession: GSM1937502 ID: 301937502 17586. SU623-Leuk Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427914 Sample Accession: GSM1937501 ID: 301937501 17587. SU623-Leuk-Rep2-150212 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427913 Sample Accession: GSM1937500 ID: 301937500 17588. SU623-Leuk-Rep1-150212 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427912 Sample Accession: GSM1937499 ID: 301937499 17589. SU583-pHSC-150627 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427911 Sample Accession: GSM1937498 ID: 301937498 17590. SU583-pHSC-141115 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427910 Sample Accession: GSM1937497 ID: 301937497 17591. SU583-LSC-150120 Organism: Homo sapiens Source name: LSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427909 Sample Accession: GSM1937496 ID: 301937496 17592. SU583-Leuk-141115 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427908 Sample Accession: GSM1937495 ID: 301937495 17593. SU575 pHSC Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427907 Sample Accession: GSM1937494 ID: 301937494 17594. SU575-LSC-150120 Organism: Homo sapiens Source name: LSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427906 Sample Accession: GSM1937493 ID: 301937493 17595. SU575-Leuk Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427905 Sample Accession: GSM1937492 ID: 301937492 17596. SU501-pHSC-141118 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427904 Sample Accession: GSM1937491 ID: 301937491 17597. SU501-Leuk-141118 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427903 Sample Accession: GSM1937490 ID: 301937490 17598. SU496-pHSC-140814 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427902 Sample Accession: GSM1937489 ID: 301937489 17599. SU496-LSC-012015 Organism: Homo sapiens Source name: LSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427901 Sample Accession: GSM1937488 ID: 301937488 17600. SU496-Leuk-140814 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427900 Sample Accession: GSM1937487 ID: 301937487 17601. SU484-pHSC-140812 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427899 Sample Accession: GSM1937486 ID: 301937486 17602. SU484-Leuk-140812 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427898 Sample Accession: GSM1937485 ID: 301937485 17603. SU444-pHSC-141118 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427897 Sample Accession: GSM1937484 ID: 301937484 17604. SU444-LSC-012015 Organism: Homo sapiens Source name: LSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427896 Sample Accession: GSM1937483 ID: 301937483 17605. SU444-Leuk-141118 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427895 Sample Accession: GSM1937482 ID: 301937482 17606. SU353-pHSC-140923 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427894 Sample Accession: GSM1937481 ID: 301937481 17607. SU353-LSC-150120 Organism: Homo sapiens Source name: LSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427893 Sample Accession: GSM1937480 ID: 301937480 17608. SU353-Leuk-140923 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427892 Sample Accession: GSM1937479 ID: 301937479 17609. SU351-pHSC-140814 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427891 Sample Accession: GSM1937478 ID: 301937478 17610. SU351-Leuk-140814 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427890 Sample Accession: GSM1937477 ID: 301937477 17611. SU336-pHSC-141119 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427889 Sample Accession: GSM1937476 ID: 301937476 17612. SU336-Leuk-141119 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427888 Sample Accession: GSM1937475 ID: 301937475 17613. SU306-pHSC-141121 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427887 Sample Accession: GSM1937474 ID: 301937474 17614. SU306-Leuk-141121 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427886 Sample Accession: GSM1937473 ID: 301937473 17615. SU209-pHSC-B-150627 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427885 Sample Accession: GSM1937472 ID: 301937472 17616. SU209-pHSC-A-150627 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427884 Sample Accession: GSM1937471 ID: 301937471 17617. SU209-pHSC-140911 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427883 Sample Accession: GSM1937470 ID: 301937470 17618. SU209-LSC-012015 Organism: Homo sapiens Source name: LSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427882 Sample Accession: GSM1937469 ID: 301937469 17619. SU209-Leuk-140911 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427881 Sample Accession: GSM1937468 ID: 301937468 17620. SU070-pHSC-Rep2-140805 Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427880 Sample Accession: GSM1937467 ID: 301937467 17621. SU070-Leuk-Rep2-140805 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427877 Sample Accession: GSM1937464 ID: 301937464 17622. SU048-pHSC Organism: Homo sapiens Source name: pHSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427875 Sample Accession: GSM1937462 ID: 301937462 17623. SU048-Leuk Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427874 Sample Accession: GSM1937461 ID: 301937461 17624. SU048-Leuk-Rep3-140813 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427873 Sample Accession: GSM1937460 ID: 301937460 17625. SU048-Leuk-Rep2-150212 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427872 Sample Accession: GSM1937459 ID: 301937459 17626. SU048-Leuk-Rep2-140813 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427871 Sample Accession: GSM1937458 ID: 301937458 17627. SU048-Leuk-Rep1-150212 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427870 Sample Accession: GSM1937457 ID: 301937457 17628. SU048-Leuk-Rep1-140813 Organism: Homo sapiens Source name: Blast Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427869 Sample Accession: GSM1937456 ID: 301937456 17629. Donor6926-CLP-14B-150318 Organism: Homo sapiens Source name: CLP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427868 Sample Accession: GSM1937455 ID: 301937455 17630. Donor5483-Bcell-13B-150305 Organism: Homo sapiens Source name: Bcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427867 Sample Accession: GSM1937454 ID: 301937454 17631. Donor7256-7B-141106 Organism: Homo sapiens Source name: Mono Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427866 Sample Accession: GSM1937453 ID: 301937453 17632. Donor7256-7A-141106 Organism: Homo sapiens Source name: Mono Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427865 Sample Accession: GSM1937452 ID: 301937452 17633. Donor7256-6B-141106 Organism: Homo sapiens Source name: MEP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427864 Sample Accession: GSM1937451 ID: 301937451 17634. Donor7256-6A-141106 Organism: Homo sapiens Source name: MEP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427863 Sample Accession: GSM1937450 ID: 301937450 17635. Donor7256-5B-141106 Organism: Homo sapiens Source name: GMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427862 Sample Accession: GSM1937449 ID: 301937449 17636. Donor7256-5A-141106 Organism: Homo sapiens Source name: GMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427861 Sample Accession: GSM1937448 ID: 301937448 17637. Donor7256-4B-141106 Organism: Homo sapiens Source name: CMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427860 Sample Accession: GSM1937447 ID: 301937447 17638. Donor7256-4A-110614 Organism: Homo sapiens Source name: CMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427859 Sample Accession: GSM1937446 ID: 301937446 17639. Donor7256-3A-141106 Organism: Homo sapiens Source name: LMPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427858 Sample Accession: GSM1937445 ID: 301937445 17640. Donor7256-2B-110614 Organism: Homo sapiens Source name: MPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427857 Sample Accession: GSM1937444 ID: 301937444 17641. Donor7256-2A-110614 Organism: Homo sapiens Source name: MPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427856 Sample Accession: GSM1937443 ID: 301937443 17642. Donor7256-1B-110614 Organism: Homo sapiens Source name: HSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427855 Sample Accession: GSM1937442 ID: 301937442 17643. Donor7256-1A-110614 Organism: Homo sapiens Source name: HSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427854 Sample Accession: GSM1937441 ID: 301937441 17644. Donor6926-Erythroblast-15B-150318 Organism: Homo sapiens Source name: Ery Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427853 Sample Accession: GSM1937440 ID: 301937440 17645. Donor6926-Erythroblast-15A-150318 Organism: Homo sapiens Source name: Ery Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427852 Sample Accession: GSM1937439 ID: 301937439 17646. Donor6926-CLP-14A-150318 Organism: Homo sapiens Source name: CLP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427851 Sample Accession: GSM1937438 ID: 301937438 17647. Donor5483-Nkcell-11B-150305 Organism: Homo sapiens Source name: NKcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427850 Sample Accession: GSM1937437 ID: 301937437 17648. Donor5483-NK-11A-150305 Organism: Homo sapiens Source name: NKcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427849 Sample Accession: GSM1937436 ID: 301937436 17649. Donor5483-Erythroblast-15C-150305 Organism: Homo sapiens Source name: Ery Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427848 Sample Accession: GSM1937435 ID: 301937435 17650. Donor5483-Erythroblast-15B-150305 Organism: Homo sapiens Source name: Ery Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427847 Sample Accession: GSM1937434 ID: 301937434 17651. Donor5483-Erythroblast-15A-150305 Organism: Homo sapiens Source name: Ery Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427846 Sample Accession: GSM1937433 ID: 301937433 17652. Donor5483-CLP-14A-150305 Organism: Homo sapiens Source name: CLP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427845 Sample Accession: GSM1937432 ID: 301937432 17653. Donor5483-CD8-10B-150305 Organism: Homo sapiens Source name: CD8Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427844 Sample Accession: GSM1937431 ID: 301937431 17654. Donor5483-CD8-10A-150305 Organism: Homo sapiens Source name: CD8Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427843 Sample Accession: GSM1937430 ID: 301937430 17655. Donor5483-CD4-9B-150305 Organism: Homo sapiens Source name: CD4Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427842 Sample Accession: GSM1937429 ID: 301937429 17656. Donor5483-CD4-9A-150305 Organism: Homo sapiens Source name: CD4Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427841 Sample Accession: GSM1937428 ID: 301937428 17657. Donor5483-Bcell-13A-150305 Organism: Homo sapiens Source name: Bcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427840 Sample Accession: GSM1937427 ID: 301937427 17658. Donor4983-Nkcell-11A-150120 Organism: Homo sapiens Source name: NKcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427839 Sample Accession: GSM1937426 ID: 301937426 17659. Donor4983-CD8-10A-150120 Organism: Homo sapiens Source name: CD8Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427838 Sample Accession: GSM1937425 ID: 301937425 17660. Donor4983-CD4-9A-150120 Organism: Homo sapiens Source name: CD4Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427837 Sample Accession: GSM1937424 ID: 301937424 17661. Donor4983-Bcell-13A-150120 Organism: Homo sapiens Source name: Bcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427836 Sample Accession: GSM1937423 ID: 301937423 17662. Donor2596-Nkcell-11A-150303 Organism: Homo sapiens Source name: NKcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427835 Sample Accession: GSM1937422 ID: 301937422 17663. Donor2596-NK-11B-150303 Organism: Homo sapiens Source name: NKcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427834 Sample Accession: GSM1937421 ID: 301937421 17664. Donor2596-MPP-2B-150303 Organism: Homo sapiens Source name: MPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427833 Sample Accession: GSM1937420 ID: 301937420 17665. Donor2596-MPP-2A-150303 Organism: Homo sapiens Source name: MPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427832 Sample Accession: GSM1937419 ID: 301937419 17666. Donor2596-MEP-6A-150303 Organism: Homo sapiens Source name: MEP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427831 Sample Accession: GSM1937418 ID: 301937418 17667. Donor2596-HSC-1B-150303 Organism: Homo sapiens Source name: HSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427830 Sample Accession: GSM1937417 ID: 301937417 17668. Donor2596-HSC-1A-150303 Organism: Homo sapiens Source name: HSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427829 Sample Accession: GSM1937416 ID: 301937416 17669. Donor2596-GMP-5A-150303 Organism: Homo sapiens Source name: GMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427828 Sample Accession: GSM1937415 ID: 301937415 17670. Donor2596-Erythroblast-15C-150303 Organism: Homo sapiens Source name: Ery Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427827 Sample Accession: GSM1937414 ID: 301937414 17671. Donor2596-Erythroblast-15B-150303 Organism: Homo sapiens Source name: Ery Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427826 Sample Accession: GSM1937413 ID: 301937413 17672. Donor2596-Erythroblast-15A-150303 Organism: Homo sapiens Source name: Ery Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427825 Sample Accession: GSM1937412 ID: 301937412 17673. Donor2596-CMP-4B-150303 Organism: Homo sapiens Source name: CMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427824 Sample Accession: GSM1937411 ID: 301937411 17674. Donor2596-CMP-4A-150303 Organism: Homo sapiens Source name: CMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427823 Sample Accession: GSM1937410 ID: 301937410 17675. Donor2596-CLP-14B-150303 Organism: Homo sapiens Source name: CLP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427822 Sample Accession: GSM1937409 ID: 301937409 17676. Donor2596-CLP-14A-150303 Organism: Homo sapiens Source name: CLP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427821 Sample Accession: GSM1937408 ID: 301937408 17677. Donor2596-CD8-10B-150303 Organism: Homo sapiens Source name: CD8Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427820 Sample Accession: GSM1937407 ID: 301937407 17678. Donor2596-CD4-9A-150303 Organism: Homo sapiens Source name: CD4Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427819 Sample Accession: GSM1937406 ID: 301937406 17679. Donor1022-Nkcell-11-150120 Organism: Homo sapiens Source name: NKcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427818 Sample Accession: GSM1937405 ID: 301937405 17680. Donor1022-CD8-10-150120 Organism: Homo sapiens Source name: CD8Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427817 Sample Accession: GSM1937404 ID: 301937404 17681. Donor1022-CD4-9-150120 Organism: Homo sapiens Source name: CD4Tcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427816 Sample Accession: GSM1937403 ID: 301937403 17682. Donor1022-Bcell-13-150120 Organism: Homo sapiens Source name: Bcell Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427815 Sample Accession: GSM1937402 ID: 301937402 17683. CB102-CD34-150627 Organism: Homo sapiens Source name: CD34 Cord Blood Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427814 Sample Accession: GSM1937401 ID: 301937401 17684. BM-CD34-2 Organism: Homo sapiens Source name: CD34 Bone Marrow Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427813 Sample Accession: GSM1937400 ID: 301937400 17685. BM-CD34-1 Organism: Homo sapiens Source name: CD34 Bone Marrow Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427812 Sample Accession: GSM1937399 ID: 301937399 17686. 6792-7B Organism: Homo sapiens Source name: Mono Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427811 Sample Accession: GSM1937398 ID: 301937398 17687. 6792-7A Organism: Homo sapiens Source name: Mono Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427810 Sample Accession: GSM1937397 ID: 301937397 17688. 6792-6B Organism: Homo sapiens Source name: MEP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427809 Sample Accession: GSM1937396 ID: 301937396 17689. 6792-6A Organism: Homo sapiens Source name: MEP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427808 Sample Accession: GSM1937395 ID: 301937395 17690. 6792-5B Organism: Homo sapiens Source name: GMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427807 Sample Accession: GSM1937394 ID: 301937394 17691. 6792-5A Organism: Homo sapiens Source name: GMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427806 Sample Accession: GSM1937393 ID: 301937393 17692. 6792-4B Organism: Homo sapiens Source name: CMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427805 Sample Accession: GSM1937392 ID: 301937392 17693. 6792-4A Organism: Homo sapiens Source name: CMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427804 Sample Accession: GSM1937391 ID: 301937391 17694. 6792-3A Organism: Homo sapiens Source name: LMPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427803 Sample Accession: GSM1937390 ID: 301937390 17695. 6792-2A Organism: Homo sapiens Source name: MPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427802 Sample Accession: GSM1937389 ID: 301937389 17696. 6792-1B Organism: Homo sapiens Source name: HSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427801 Sample Accession: GSM1937388 ID: 301937388 17697. 6792-1A Organism: Homo sapiens Source name: HSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427800 Sample Accession: GSM1937387 ID: 301937387 17698. 4983-7B Organism: Homo sapiens Source name: Mono Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427799 Sample Accession: GSM1937386 ID: 301937386 17699. 4983-7A Organism: Homo sapiens Source name: Mono Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427798 Sample Accession: GSM1937385 ID: 301937385 17700. 4983-6B Organism: Homo sapiens Source name: MEP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427797 Sample Accession: GSM1937384 ID: 301937384 17701. 4983-6A Organism: Homo sapiens Source name: MEP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427796 Sample Accession: GSM1937383 ID: 301937383 17702. 4983-5B Organism: Homo sapiens Source name: GMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427795 Sample Accession: GSM1937382 ID: 301937382 17703. 4983-5A Organism: Homo sapiens Source name: GMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427794 Sample Accession: GSM1937381 ID: 301937381 17704. 4983-4B Organism: Homo sapiens Source name: CMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427793 Sample Accession: GSM1937380 ID: 301937380 17705. 4983-4A Organism: Homo sapiens Source name: CMP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427792 Sample Accession: GSM1937379 ID: 301937379 17706. 4983-3A Organism: Homo sapiens Source name: LMPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427791 Sample Accession: GSM1937378 ID: 301937378 17707. 4983-2A Organism: Homo sapiens Source name: MPP Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427790 Sample Accession: GSM1937377 ID: 301937377 17708. 4983-1A Organism: Homo sapiens Source name: HSC Platform: GPL18573 Series: GSE74912 GSE75384 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1427789 Sample Accession: GSM1937376 ID: 301937376 17709. KP22-nfib-2w_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753558 Sample Accession: GSM2147620 ID: 302147620 17710. KP22-nfib-2w_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753557 Sample Accession: GSM2147619 ID: 302147619 17711. KP22-nfib-1w_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753556 Sample Accession: GSM2147618 ID: 302147618 17712. KP22-nfib-1w_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753555 Sample Accession: GSM2147617 ID: 302147617 17713. KP22-nfib-2d_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753554 Sample Accession: GSM2147616 ID: 302147616 17714. KP22-nfib-2d_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753553 Sample Accession: GSM2147615 ID: 302147615 17715. KP22-nfib-1d_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753552 Sample Accession: GSM2147614 ID: 302147614 17716. KP22-nfib-1d_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753551 Sample Accession: GSM2147613 ID: 302147613 17717. KP22-empty-2w_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753550 Sample Accession: GSM2147612 ID: 302147612 17718. KP22-empty-2w_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753549 Sample Accession: GSM2147611 ID: 302147611 17719. KP22-empty-1w_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753548 Sample Accession: GSM2147610 ID: 302147610 17720. KP22-empty-1w_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753547 Sample Accession: GSM2147609 ID: 302147609 17721. KP22-empty-2d_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753546 Sample Accession: GSM2147608 ID: 302147608 17722. KP22-empty-2d_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753545 Sample Accession: GSM2147607 ID: 302147607 17723. KP22-empty-1d_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753544 Sample Accession: GSM2147606 ID: 302147606 17724. KP22-empty-1d_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753543 Sample Accession: GSM2147605 ID: 302147605 17725. KP1-sh2-FACS_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753541 Sample Accession: GSM2147603 ID: 302147603 17726. KP1-shLuc-FACS_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753540 Sample Accession: GSM2147602 ID: 302147602 17727. KP1-shLuc-FACS_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753539 Sample Accession: GSM2147601 ID: 302147601 17728. 16T-sh2-FACS_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753534 Sample Accession: GSM2147596 ID: 302147596 17729. 16T-sh2-FACS_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753533 Sample Accession: GSM2147595 ID: 302147595 17730. 16T_sh2_counted_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753532 Sample Accession: GSM2147594 ID: 302147594 17731. 16T_sh2_counted_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753531 Sample Accession: GSM2147593 ID: 302147593 17732. 16T-shLuc-FACS_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753530 Sample Accession: GSM2147592 ID: 302147592 17733. 16T-shLuc-FACS_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753529 Sample Accession: GSM2147591 ID: 302147591 17734. 16T_shLuc_counted_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753528 Sample Accession: GSM2147590 ID: 302147590 17735. 16T_shLuc_counted_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753527 Sample Accession: GSM2147589 ID: 302147589 17736. MotL-B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753502 Sample Accession: GSM2147588 ID: 302147588 17737. MotL-A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753501 Sample Accession: GSM2147587 ID: 302147587 17738. KP22-B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753500 Sample Accession: GSM2147586 ID: 302147586 17739. KP22-A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753526 Sample Accession: GSM2147585 ID: 302147585 17740. KP1-B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753525 Sample Accession: GSM2147584 ID: 302147584 17741. KP1-A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753524 Sample Accession: GSM2147583 ID: 302147583 17742. 2N1-B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753523 Sample Accession: GSM2147582 ID: 302147582 17743. 2N1-A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753522 Sample Accession: GSM2147581 ID: 302147581 17744. 25L-B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753521 Sample Accession: GSM2147580 ID: 302147580 17745. 25L-A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753520 Sample Accession: GSM2147579 ID: 302147579 17746. 16T-B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753519 Sample Accession: GSM2147578 ID: 302147578 17747. 16T-A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753518 Sample Accession: GSM2147577 ID: 302147577 17748. T4-B [ATAC-seq] Organism: Mus musculus Source name: primary tumor (lung) Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753517 Sample Accession: GSM2147576 ID: 302147576 17749. T4-A [ATAC-seq] Organism: Mus musculus Source name: primary tumor (lung) Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753516 Sample Accession: GSM2147575 ID: 302147575 17750. T3-B [ATAC-seq] Organism: Mus musculus Source name: primary tumor (lung) Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753515 Sample Accession: GSM2147574 ID: 302147574 17751. T3-A [ATAC-seq] Organism: Mus musculus Source name: primary tumor (lung) Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753514 Sample Accession: GSM2147573 ID: 302147573 17752. T2-B [ATAC-seq] Organism: Mus musculus Source name: primary tumor (lung) Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753513 Sample Accession: GSM2147572 ID: 302147572 17753. T2-A [ATAC-seq] Organism: Mus musculus Source name: primary tumor (lung) Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753512 Sample Accession: GSM2147571 ID: 302147571 17754. T1 [ATAC-seq] Organism: Mus musculus Source name: primary tumor (lung) Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753511 Sample Accession: GSM2147570 ID: 302147570 17755. L4-B [ATAC-seq] Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753510 Sample Accession: GSM2147569 ID: 302147569 17756. L4-A [ATAC-seq] Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753509 Sample Accession: GSM2147568 ID: 302147568 17757. L3-B [ATAC-seq] Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753508 Sample Accession: GSM2147567 ID: 302147567 17758. L3-A [ATAC-seq] Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753507 Sample Accession: GSM2147566 ID: 302147566 17759. L2-B [ATAC-seq] Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753506 Sample Accession: GSM2147565 ID: 302147565 17760. L2-A [ATAC-seq] Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753505 Sample Accession: GSM2147564 ID: 302147564 17761. L1-B [ATAC-seq] Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753504 Sample Accession: GSM2147563 ID: 302147563 17762. L1-A [ATAC-seq] Organism: Mus musculus Source name: liver metastasis Platform: GPL17021 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753503 Sample Accession: GSM2147562 ID: 302147562 17763. KP1-sh2-FACS_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL16417 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753542 Sample Accession: GSM2147604 ID: 302147604 17764. KP1-sh2_counted_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL16417 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753538 Sample Accession: GSM2147600 ID: 302147600 17765. KP1-sh2_counted_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL16417 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753537 Sample Accession: GSM2147599 ID: 302147599 17766. KP1-shLuc_counted_B [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL16417 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753536 Sample Accession: GSM2147598 ID: 302147598 17767. KP1-shLuc_counted_A [ATAC-seq] Organism: Mus musculus Source name: cell line Platform: GPL16417 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753535 Sample Accession: GSM2147597 ID: 302147597 17768. NCI-H524_nfib_C [ATAC-seq] Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753566 Sample Accession: GSM2147628 ID: 302147628 17769. NCI-H524_nfib_B [ATAC-seq] Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753565 Sample Accession: GSM2147627 ID: 302147627 17770. NCI-H524_nfib_A [ATAC-seq] Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753564 Sample Accession: GSM2147626 ID: 302147626 17771. NCI-H524_empty_C [ATAC-seq] Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753563 Sample Accession: GSM2147625 ID: 302147625 17772. NCI-H524_empty_B [ATAC-seq] Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753562 Sample Accession: GSM2147624 ID: 302147624 17773. NCI-H524_empty_A [ATAC-seq] Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753561 Sample Accession: GSM2147623 ID: 302147623 17774. NJH29_nfib_A [ATAC-seq] Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753560 Sample Accession: GSM2147622 ID: 302147622 17775. NJH29_empty_A [ATAC-seq] Organism: Homo sapiens Source name: cell line Platform: GPL16791 Series: GSE81255 GSE81258 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1753559 Sample Accession: GSM2147621 ID: 302147621 17776. KO Macrophage 6HR Rep2 Organism: Mus musculus Source name: LincRNA-EPS KO mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080028/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612921 Sample Accession: GSM2080028 ID: 302080028 17777. KO Macrophage 6HR Rep1 Organism: Mus musculus Source name: LincRNA-EPS KO mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080027/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612920 Sample Accession: GSM2080027 ID: 302080027 17778. KO Macrophage 2HR Rep2 Organism: Mus musculus Source name: LincRNA-EPS KO mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080026/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612919 Sample Accession: GSM2080026 ID: 302080026 17779. KO Macrophage 2HR Rep1 Organism: Mus musculus Source name: LincRNA-EPS KO mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080025/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612918 Sample Accession: GSM2080025 ID: 302080025 17780. KO Macrophage 0HR Rep2 Organism: Mus musculus Source name: LincRNA-EPS KO mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080024/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612917 Sample Accession: GSM2080024 ID: 302080024 17781. KO Macrophage 0HR Rep1 Organism: Mus musculus Source name: LincRNA-EPS KO mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080023/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612916 Sample Accession: GSM2080023 ID: 302080023 17782. WT Macrophage 6HR Rep2 Organism: Mus musculus Source name: WT mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080022/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612915 Sample Accession: GSM2080022 ID: 302080022 17783. WT Macrophage 6HR Rep1 Organism: Mus musculus Source name: WT mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612914 Sample Accession: GSM2080021 ID: 302080021 17784. WT Macrophage 2HR Rep2 Organism: Mus musculus Source name: WT mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612913 Sample Accession: GSM2080020 ID: 302080020 17785. WT Macrophage 2HR Rep1 Organism: Mus musculus Source name: WT mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612912 Sample Accession: GSM2080019 ID: 302080019 17786. WT Macrophage 0HR Rep2 Organism: Mus musculus Source name: WT mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612911 Sample Accession: GSM2080018 ID: 302080018 17787. WT Macrophage 0HR Rep1 Organism: Mus musculus Source name: WT mouse bone marrow-derived macrophage Platform: GPL19057 Series: GSE78873 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2080nnn/GSM2080017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1612910 Sample Accession: GSM2080017 ID: 302080017 17788. sample 44_ATAC_Sp_NK_rpt2 Organism: Mus musculus Source name: Natural killer cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565794 Sample Accession: GSM2056335 ID: 302056335 17789. sample 43_ATAC_Sp_NK_rpt1 Organism: Mus musculus Source name: Natural killer cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056334/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565793 Sample Accession: GSM2056334 ID: 302056334 17790. sample 30_ATAC_GT_NCRILC3_rpt2 Organism: Mus musculus Source name: Group 3 innate lymphoid cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565780 Sample Accession: GSM2056321 ID: 302056321 17791. sample 29_ATAC_GT_NCRILC3_rpt1 Organism: Mus musculus Source name: Group 3 innate lymphoid cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565779 Sample Accession: GSM2056320 ID: 302056320 17792. sample 26_ATAC_GT_ILC2_rpt2 Organism: Mus musculus Source name: Group 2 innate lymphoid cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565776 Sample Accession: GSM2056317 ID: 302056317 17793. sample 25_ATAC_GT_ILC2_rpt1 Organism: Mus musculus Source name: Group 2 innate lymphoid cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056316/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565775 Sample Accession: GSM2056316 ID: 302056316 17794. sample 23_ATAC_GT_CD4ILC3_rpt2 Organism: Mus musculus Source name: Group 3 innate lymphoid cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056314/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565773 Sample Accession: GSM2056314 ID: 302056314 17795. sample 22_ATAC_GT_CD4ILC3_rpt1 Organism: Mus musculus Source name: Group 3 innate lymphoid cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056313/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565772 Sample Accession: GSM2056313 ID: 302056313 17796. sample 18_ATAC_BM_NKp_rpt2 Organism: Mus musculus Source name: NK precursor cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056309/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565768 Sample Accession: GSM2056309 ID: 302056309 17797. sample 17_ATAC_BM_NKp_rpt1 Organism: Mus musculus Source name: NK precursor cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056308/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565767 Sample Accession: GSM2056308 ID: 302056308 17798. sample 10_ATAC_BM_iNK_rpt2 Organism: Mus musculus Source name: Immature NK cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056301/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565760 Sample Accession: GSM2056301 ID: 302056301 17799. sample 8_ATAC_BM_ILC2p_rpt2 Organism: Mus musculus Source name: ILC2 precursor cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056299/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565758 Sample Accession: GSM2056299 ID: 302056299 17800. sample 7_ATAC_BM_ILC2p_rpt1 Organism: Mus musculus Source name: ILC2 precursor cells Platform: GPL13112 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056298/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565757 Sample Accession: GSM2056298 ID: 302056298 17801. sample 14_ATAC_BM_MPP_rpt2 Organism: Mus musculus Source name: Multipotent progenitor cells Platform: GPL17021 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056305/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565764 Sample Accession: GSM2056305 ID: 302056305 17802. sample 13_ATAC_BM_MPP_rpt1 Organism: Mus musculus Source name: Multipotent progenitor cells Platform: GPL17021 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056304/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565763 Sample Accession: GSM2056304 ID: 302056304 17803. sample 9_ATAC_BM_iNK_rpt1 Organism: Mus musculus Source name: Immature NK cells Platform: GPL17021 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056300/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565759 Sample Accession: GSM2056300 ID: 302056300 17804. sample 6_ATAC_BM_HSC_rpt2 Organism: Mus musculus Source name: Hematopoietic stem cells Platform: GPL17021 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056297/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565756 Sample Accession: GSM2056297 ID: 302056297 17805. sample 5_ATAC_BM_HSC_rpt1 Organism: Mus musculus Source name: Hematopoietic stem cells Platform: GPL17021 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056296/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565755 Sample Accession: GSM2056296 ID: 302056296 17806. sample 4_ATAC_BM_CLP_rpt2 Organism: Mus musculus Source name: Common lymphoid progenitor cells Platform: GPL17021 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056295/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565754 Sample Accession: GSM2056295 ID: 302056295 17807. sample 3_ATAC_BM_CLP_rpt1 Organism: Mus musculus Source name: Common lymphoid progenitor cells Platform: GPL17021 Series: GSE77695 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM2056nnn/GSM2056294/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1565753 Sample Accession: GSM2056294 ID: 302056294 17808. PBMC_mergedReplicates_sample20 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708269/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055375 Sample Accession: GSM1708269 ID: 301708269 17809. PBMC_mergedReplicates_sample19 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708268/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055374 Sample Accession: GSM1708268 ID: 301708268 17810. PBMC_mergedReplicates_sample18 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708267/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055373 Sample Accession: GSM1708267 ID: 301708267 17811. PBMC_mergedReplicates_sample17 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708266/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055372 Sample Accession: GSM1708266 ID: 301708266 17812. PBMC_mergedReplicates_sample16 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708265/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055371 Sample Accession: GSM1708265 ID: 301708265 17813. PBMC_mergedReplicates_sample15 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708264/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055370 Sample Accession: GSM1708264 ID: 301708264 17814. PBMC_mergedReplicates_sample14 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708263/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055369 Sample Accession: GSM1708263 ID: 301708263 17815. PBMC_mergedReplicates_sample13 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708262/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055368 Sample Accession: GSM1708262 ID: 301708262 17816. PBMC_mergedReplicates_sample12 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055367 Sample Accession: GSM1708261 ID: 301708261 17817. PBMC_mergedReplicates_sample11 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055366 Sample Accession: GSM1708260 ID: 301708260 17818. PBMC_mergedReplicates_sample10 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055365 Sample Accession: GSM1708259 ID: 301708259 17819. PBMC_mergedReplicates_sample9 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055364 Sample Accession: GSM1708258 ID: 301708258 17820. PBMC_mergedReplicates_sample8 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055363 Sample Accession: GSM1708257 ID: 301708257 17821. PBMC_mergedReplicates_sample7 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055362 Sample Accession: GSM1708256 ID: 301708256 17822. PBMC_mergedReplicates_sample6 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055361 Sample Accession: GSM1708255 ID: 301708255 17823. PBMC_mergedReplicates_sample5 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055360 Sample Accession: GSM1708254 ID: 301708254 17824. PBMC_mergedReplicates_sample4 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055359 Sample Accession: GSM1708253 ID: 301708253 17825. PBMC_mergedReplicates_sample3 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055358 Sample Accession: GSM1708252 ID: 301708252 17826. PBMC_mergedReplicates_sample2 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055357 Sample Accession: GSM1708251 ID: 301708251 17827. PBMC_mergedReplicates_sample1 Organism: Homo sapiens Source name: PBMC Platform: GPL18573 Series: GSE69749 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1708nnn/GSM1708250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1055356 Sample Accession: GSM1708250 ID: 301708250 17828. ATAC-Seq_Sample09_Fibroblast_Rep4 Organism: Homo sapiens Source name: Fibroblasts Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662261/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000988 Sample Accession: GSM1662261 ID: 301662261 17829. ATAC-Seq_Sample09_Fibroblast_Rep3 Organism: Homo sapiens Source name: Fibroblasts Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662260/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000987 Sample Accession: GSM1662260 ID: 301662260 17830. ATAC-Seq_Sample09_Fibroblast_Rep2 Organism: Homo sapiens Source name: Fibroblasts Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662259/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000986 Sample Accession: GSM1662259 ID: 301662259 17831. ATAC-Seq_Sample09_Fibroblast_Rep1 Organism: Homo sapiens Source name: Fibroblasts Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662258/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000985 Sample Accession: GSM1662258 ID: 301662258 17832. ATAC-Seq_Sample08_CEC_Rep4 Organism: Homo sapiens Source name: CEC, Donor B, passage 2 Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662257/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000984 Sample Accession: GSM1662257 ID: 301662257 17833. ATAC-Seq_Sample07_CEC_Rep3 Organism: Homo sapiens Source name: CEC, Donor B, passage 2 Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662256/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000983 Sample Accession: GSM1662256 ID: 301662256 17834. ATAC-Seq_Sample06_CEC_Rep2 Organism: Homo sapiens Source name: CEC, Donor B, passage 2 Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662255/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000982 Sample Accession: GSM1662255 ID: 301662255 17835. ATAC-Seq_Sample05_CEC_Rep1 Organism: Homo sapiens Source name: CEC, Donor B, passage 2 Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662254/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000981 Sample Accession: GSM1662254 ID: 301662254 17836. ATAC-Seq_Sample01_6TFs_Rep4 Organism: Homo sapiens Source name: 6TFs transduced-fibroblasts Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662253/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000980 Sample Accession: GSM1662253 ID: 301662253 17837. ATAC-Seq_Sample01_6TFs_Rep3 Organism: Homo sapiens Source name: 6TFs transduced-fibroblasts Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662252/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000979 Sample Accession: GSM1662252 ID: 301662252 17838. ATAC-Seq_Sample01_6TFs_Rep2 Organism: Homo sapiens Source name: 6TFs transduced-fibroblasts Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662251/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000978 Sample Accession: GSM1662251 ID: 301662251 17839. ATAC-Seq_Sample01_6TFs_Rep1 Organism: Homo sapiens Source name: 6TFs transduced-fibroblasts Platform: GPL16791 Series: GSE67823 GSE68069 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1662nnn/GSM1662250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1000977 Sample Accession: GSM1662250 ID: 301662250 17840. ATAC-seq_NrlKO_retina_rep2 Organism: Mus musculus Source name: Nrl KO mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175782 Sample Accession: GSM1865020 ID: 301865020 17841. ATAC-seq_NrlKO_retina_rep1 Organism: Mus musculus Source name: Nrl KO mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175781 Sample Accession: GSM1865019 ID: 301865019 17842. ATAC-seq_rd7_retina_rep2 Organism: Mus musculus Source name: rd7 mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175780 Sample Accession: GSM1865018 ID: 301865018 17843. ATAC-seq_rd7_retina_rep1 Organism: Mus musculus Source name: rd7 mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865017/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175779 Sample Accession: GSM1865017 ID: 301865017 17844. ATAC-seq_WT_retina_rep2 Organism: Mus musculus Source name: WT mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865016/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175778 Sample Accession: GSM1865016 ID: 301865016 17845. ATAC-seq_WT_retina_rep1 Organism: Mus musculus Source name: WT mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865015/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175777 Sample Accession: GSM1865015 ID: 301865015 17846. ATAC-seq_WT_cones_rep2 Organism: Mus musculus Source name: Cones from WT mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865014/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175776 Sample Accession: GSM1865014 ID: 301865014 17847. ATAC-seq_WT_cones_rep1 Organism: Mus musculus Source name: Cones from WT mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865013/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175775 Sample Accession: GSM1865013 ID: 301865013 17848. ATAC-seq_WT_rods_rep2 Organism: Mus musculus Source name: Rods from WT mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175774 Sample Accession: GSM1865012 ID: 301865012 17849. ATAC-seq_WT_rods_rep1 Organism: Mus musculus Source name: Rods from WT mouse retina Platform: GPL17021 Series: GSE72550 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1865nnn/GSM1865011/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1175773 Sample Accession: GSM1865011 ID: 301865011 17850. WT_HFSC resequenced Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL13112 Series: GSE68288 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1011117 Sample Accession: GSM1667043 ID: 301667043 17851. KO_HFSC resequenced Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL13112 Series: GSE68288 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1011116 Sample Accession: GSM1667042 ID: 301667042 17852. WT_HFSC Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL13112 Series: GSE68288 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1011115 Sample Accession: GSM1667041 ID: 301667041 17853. KO_HFSC Organism: Mus musculus Source name: hair follicle stem cells Platform: GPL13112 Series: GSE68288 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1011114 Sample Accession: GSM1667040 ID: 301667040 17854. ATAC-seq - mES - 12hr KD, Control ASO rep2 Organism: Mus musculus Source name: Embryonic Stem Cells_control_antisense_oligonucleotides Platform: GPL19057 Series: GSE69139 GSE69143 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1036424 Sample Accession: GSM1693779 ID: 301693779 17855. ATAC-seq - mES - 12hr KD, Control ASO rep1 Organism: Mus musculus Source name: Embryonic Stem Cells_control_antisense_oligonucleotides Platform: GPL19057 Series: GSE69139 GSE69143 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1036423 Sample Accession: GSM1693778 ID: 301693778 17856. ATAC-seq - mES - 12hr KD, 7SK ASO rep2 Organism: Mus musculus Source name: Embryonic Stem Cells_7SK_antisense_oligonucleotides Platform: GPL19057 Series: GSE69139 GSE69143 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1036422 Sample Accession: GSM1693777 ID: 301693777 17857. ATAC-seq - mES - 12hr KD, 7SK ASO rep1 Organism: Mus musculus Source name: Embryonic Stem Cells_7SK_antisense_oligonucleotides Platform: GPL19057 Series: GSE69139 GSE69143 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1036421 Sample Accession: GSM1693776 ID: 301693776 17858. ATAC-seq_tet123_wt_rep2 Organism: Danio rerio Source name: embryo Platform: GPL14875 Series: GSE68087 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1859nnn/GSM1859512/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1162718 Sample Accession: GSM1859512 ID: 301859512 17859. ATAC-seq_tet123_wt_rep1 Organism: Danio rerio Source name: embryo Platform: GPL14875 Series: GSE68087 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1859nnn/GSM1859511/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1162717 Sample Accession: GSM1859511 ID: 301859511 17860. ATAC-seq_tet123_MO_rep2 Organism: Danio rerio Source name: embryo Platform: GPL14875 Series: GSE68087 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1859nnn/GSM1859510/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1162716 Sample Accession: GSM1859510 ID: 301859510 17861. ATAC-seq_tet123_MO_rep1 Organism: Danio rerio Source name: embryo Platform: GPL14875 Series: GSE68087 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1859nnn/GSM1859509/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1162715 Sample Accession: GSM1859509 ID: 301859509 17862. Input_for_GATA3_ChIP-seq_SE_rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL15520 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156475 Sample Accession: GSM1855967 ID: 301855967 17863. Input_for_GATA3_ChIP-seq_SE_rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL15520 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156474 Sample Accession: GSM1855966 ID: 301855966 17864. GATA3_ChIP-seq_SE_rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL15520 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156473 Sample Accession: GSM1855965 ID: 301855965 17865. GATA3_ChIP-seq_SE_rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL15520 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156472 Sample Accession: GSM1855964 ID: 301855964 17866. RNA-seq_GATA3_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL11154 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156533 Sample Accession: GSM1856025 ID: 301856025 17867. RNA-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL11154 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156532 Sample Accession: GSM1856024 ID: 301856024 17868. RNA-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL11154 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156531 Sample Accession: GSM1856023 ID: 301856023 17869. RNA-seq_control_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL11154 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156530 Sample Accession: GSM1856022 ID: 301856022 17870. RNA-seq_control_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL11154 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156529 Sample Accession: GSM1856021 ID: 301856021 17871. RNA-seq_control_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL11154 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156528 Sample Accession: GSM1856020 ID: 301856020 17872. input_for_BRG1_ChIP-seq_TA1del_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156551 Sample Accession: GSM1856043 ID: 301856043 17873. input_for_BRG1_ChIP-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156550 Sample Accession: GSM1856042 ID: 301856042 17874. input_for_BRG1_ChIP-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156549 Sample Accession: GSM1856041 ID: 301856041 17875. input_for_BRG1_ChIP-seq_GATA3_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156548 Sample Accession: GSM1856040 ID: 301856040 17876. input_for_BRG1_ChIP-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156547 Sample Accession: GSM1856039 ID: 301856039 17877. input_for_BRG1_ChIP-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156546 Sample Accession: GSM1856038 ID: 301856038 17878. input_for_BRG1_ChIP-seq_control_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156545 Sample Accession: GSM1856037 ID: 301856037 17879. input_for_BRG1_ChIP-seq_control_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156544 Sample Accession: GSM1856036 ID: 301856036 17880. input_for_BRG1_ChIP-seq_control_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156543 Sample Accession: GSM1856035 ID: 301856035 17881. BRG1_ChIP-seq_TA1del_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156542 Sample Accession: GSM1856034 ID: 301856034 17882. BRG1_ChIP-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156541 Sample Accession: GSM1856033 ID: 301856033 17883. BRG1_ChIP-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156540 Sample Accession: GSM1856032 ID: 301856032 17884. BRG1_ChIP-seq_GATA3_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156539 Sample Accession: GSM1856031 ID: 301856031 17885. BRG1_ChIP-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156538 Sample Accession: GSM1856030 ID: 301856030 17886. BRG1_ChIP-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156537 Sample Accession: GSM1856029 ID: 301856029 17887. BRG1_ChIP-seq_control_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156536 Sample Accession: GSM1856028 ID: 301856028 17888. BRG1_ChIP-seq_control_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156535 Sample Accession: GSM1856027 ID: 301856027 17889. BRG1_ChIP-seq_control_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156534 Sample Accession: GSM1856026 ID: 301856026 17890. Input_for_Ty1_ChIP-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156527 Sample Accession: GSM1856019 ID: 301856019 17891. Input_for_Ty1_ChIP-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156526 Sample Accession: GSM1856018 ID: 301856018 17892. Input_for_Ty1_ChIP-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156525 Sample Accession: GSM1856017 ID: 301856017 17893. Input_for_Ty1_ChIP-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156524 Sample Accession: GSM1856016 ID: 301856016 17894. Ty1_ChIP-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156523 Sample Accession: GSM1856015 ID: 301856015 17895. Ty1_ChIP-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156522 Sample Accession: GSM1856014 ID: 301856014 17896. Ty1_ChIP-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156521 Sample Accession: GSM1856013 ID: 301856013 17897. Ty1_ChIP-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156520 Sample Accession: GSM1856012 ID: 301856012 17898. MNase-seq_TA1del_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156519 Sample Accession: GSM1856011 ID: 301856011 17899. MNase-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156518 Sample Accession: GSM1856010 ID: 301856010 17900. MNase-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156517 Sample Accession: GSM1856009 ID: 301856009 17901. MNase-seq_GATA3_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156516 Sample Accession: GSM1856008 ID: 301856008 17902. MNase-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156515 Sample Accession: GSM1856007 ID: 301856007 17903. MNase-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156514 Sample Accession: GSM1856006 ID: 301856006 17904. MNase-seq_control_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156513 Sample Accession: GSM1856005 ID: 301856005 17905. MNase-seq_control_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156512 Sample Accession: GSM1856004 ID: 301856004 17906. MNase-seq_control_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156511 Sample Accession: GSM1856003 ID: 301856003 17907. Input_for_H3K4me1_and_H3K27ac_ChIP-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156510 Sample Accession: GSM1856002 ID: 301856002 17908. Input_for_H3K4me1_and_H3K27ac_ChIP-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156509 Sample Accession: GSM1856001 ID: 301856001 17909. Input_for_H3K4me1_and_H3K27ac_ChIP-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156508 Sample Accession: GSM1856000 ID: 301856000 17910. Input_for_H3K4me1_and_H3K27ac_ChIP-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156507 Sample Accession: GSM1855999 ID: 301855999 17911. Input_for_H3K4me1_and_H3K27ac_ChIP-seq_control_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156506 Sample Accession: GSM1855998 ID: 301855998 17912. Input_for_H3K4me1_and_H3K27ac_ChIP-seq_control_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156505 Sample Accession: GSM1855997 ID: 301855997 17913. H3K27ac_ChIP-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156504 Sample Accession: GSM1855996 ID: 301855996 17914. H3K27ac_ChIP-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156503 Sample Accession: GSM1855995 ID: 301855995 17915. H3K27ac_ChIP-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156502 Sample Accession: GSM1855994 ID: 301855994 17916. H3K27ac_ChIP-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156501 Sample Accession: GSM1855993 ID: 301855993 17917. H3K27ac_ChIP-seq_control_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156500 Sample Accession: GSM1855992 ID: 301855992 17918. H3K27ac_ChIP-seq_control_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156499 Sample Accession: GSM1855991 ID: 301855991 17919. H3K4me1_ChIP-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156498 Sample Accession: GSM1855990 ID: 301855990 17920. H3K4me1_ChIP-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156497 Sample Accession: GSM1855989 ID: 301855989 17921. H3K4me1_ChIP-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156496 Sample Accession: GSM1855988 ID: 301855988 17922. H3K4me1_ChIP-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156495 Sample Accession: GSM1855987 ID: 301855987 17923. H3K4me1_ChIP-seq_control_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156494 Sample Accession: GSM1855986 ID: 301855986 17924. H3K4me1_ChIP-seq_control_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156493 Sample Accession: GSM1855985 ID: 301855985 17925. ATAC-seq_TA1del_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156492 Sample Accession: GSM1855984 ID: 301855984 17926. ATAC-seq_TA1del_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156491 Sample Accession: GSM1855983 ID: 301855983 17927. ATAC-seq_TA1del_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156490 Sample Accession: GSM1855982 ID: 301855982 17928. ATAC-seq_GATA3_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156489 Sample Accession: GSM1855981 ID: 301855981 17929. ATAC-seq_GATA3_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156488 Sample Accession: GSM1855980 ID: 301855980 17930. ATAC-seq_GATA3_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156487 Sample Accession: GSM1855979 ID: 301855979 17931. ATAC-seq_control_Rep3 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156486 Sample Accession: GSM1855978 ID: 301855978 17932. ATAC-seq_control_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156485 Sample Accession: GSM1855977 ID: 301855977 17933. ATAC-seq_control_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156484 Sample Accession: GSM1855976 ID: 301855976 17934. Input_for_GATA3_ChIP-seq_PE_37C_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156483 Sample Accession: GSM1855975 ID: 301855975 17935. Input_for_GATA3_ChIP-seq_PE_37C_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156482 Sample Accession: GSM1855974 ID: 301855974 17936. Input_for_GATA3_ChIP-seq_PE_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156481 Sample Accession: GSM1855973 ID: 301855973 17937. Input_for_GATA3_ChIP-seq_PE_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156480 Sample Accession: GSM1855972 ID: 301855972 17938. GATA3_ChIP-seq_PE_37C_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156479 Sample Accession: GSM1855971 ID: 301855971 17939. GATA3_ChIP-seq_PE_37C_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156478 Sample Accession: GSM1855970 ID: 301855970 17940. GATA3_ChIP-seq_PE_Rep2 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156477 Sample Accession: GSM1855969 ID: 301855969 17941. GATA3_ChIP-seq_PE_Rep1 Organism: Homo sapiens Source name: MDA-MB-231 Platform: GPL18573 Series: GSE72141 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156476 Sample Accession: GSM1855968 ID: 301855968 17942. Control ATAC-seq replicate 4 Organism: Mus musculus Source name: Control ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941488/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433598 Sample Accession: GSM1941488 ID: 301941488 17943. Control ATAC-seq replicate 3 Organism: Mus musculus Source name: Control ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941487/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433597 Sample Accession: GSM1941487 ID: 301941487 17944. Brg1 knockdown ATAC-seq replicate 2 Organism: Mus musculus Source name: Brg1 knockdown ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941486/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433596 Sample Accession: GSM1941486 ID: 301941486 17945. Brg1 knockdown ATAC-seq replicate 1 Organism: Mus musculus Source name: Brg1 knockdown ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941485/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433595 Sample Accession: GSM1941485 ID: 301941485 17946. Chd4 knockdown ATAC-seq replicate 2 Organism: Mus musculus Source name: Chd4 knockdown ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941484/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433594 Sample Accession: GSM1941484 ID: 301941484 17947. Chd4 knockdown ATAC-seq replicate 1 Organism: Mus musculus Source name: Chd4 knockdown ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941483/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433593 Sample Accession: GSM1941483 ID: 301941483 17948. Ep400 knockdown ATAC-seq replicate 2 Organism: Mus musculus Source name: Ep400 knockdown ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941482/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433592 Sample Accession: GSM1941482 ID: 301941482 17949. Ep400 knockdown ATAC-seq replicate 1 Organism: Mus musculus Source name: Ep400 knockdown ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941481/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433591 Sample Accession: GSM1941481 ID: 301941481 17950. Control ATAC-seq replicate 2 Organism: Mus musculus Source name: Control ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941480/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433590 Sample Accession: GSM1941480 ID: 301941480 17951. Control ATAC-seq replicate 1 Organism: Mus musculus Source name: Control ATAC-seq, ESC Platform: GPL17021 Series: GSE64825 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1941nnn/GSM1941479/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1433589 Sample Accession: GSM1941479 ID: 301941479 17952. ATAC-seq_MT_Rep2 Organism: Mus musculus Source name: C2C12 cell line Platform: GPL17021 Series: GSE76010 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1972nnn/GSM1972414/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1482286 Sample Accession: GSM1972414 ID: 301972414 17953. ATAC-seq_MT_Rep1 Organism: Mus musculus Source name: C2C12 cell line Platform: GPL17021 Series: GSE76010 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1972nnn/GSM1972413/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1482285 Sample Accession: GSM1972413 ID: 301972413 17954. ATAC-seq_MB_Rep2 Organism: Mus musculus Source name: C2C12 cell line Platform: GPL17021 Series: GSE76010 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1972nnn/GSM1972412/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1482284 Sample Accession: GSM1972412 ID: 301972412 17955. ATAC-seq_MB_Rep1 Organism: Mus musculus Source name: C2C12 cell line Platform: GPL17021 Series: GSE76010 FTP download: GEO (BW, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1972nnn/GSM1972411/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1482283 Sample Accession: GSM1972411 ID: 301972411 17956. ATAC-seq KO HUDEP EDM2 rep2 Organism: Homo sapiens Source name: LRF KO HUDEP-2 Platform: GPL16791 Series: GSE74977 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939574/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430693 Sample Accession: GSM1939574 ID: 301939574 17957. ATAC-seq KO HUDEP SFEM rep2 Organism: Homo sapiens Source name: LRF KO HUDEP-2 Platform: GPL16791 Series: GSE74977 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430692 Sample Accession: GSM1939573 ID: 301939573 17958. ATAC-seq WT HUDEP EDM2 rep2 Organism: Homo sapiens Source name: WT HUDEP-2 Platform: GPL16791 Series: GSE74977 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430691 Sample Accession: GSM1939572 ID: 301939572 17959. ATAC-seq WT HUDEP SFEM rep2 Organism: Homo sapiens Source name: WT HUDEP-2 Platform: GPL16791 Series: GSE74977 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430690 Sample Accession: GSM1939571 ID: 301939571 17960. ATAC-seq KO HUDEP EDM2 rep1 Organism: Homo sapiens Source name: LRF KO HUDEP-2 Platform: GPL16791 Series: GSE74977 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430689 Sample Accession: GSM1939570 ID: 301939570 17961. ATAC-seq KO HUDEP SFEM rep1 Organism: Homo sapiens Source name: LRF KO HUDEP-2 Platform: GPL16791 Series: GSE74977 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430688 Sample Accession: GSM1939569 ID: 301939569 17962. ATAC-seq WT HUDEP EDM2 rep1 Organism: Homo sapiens Source name: WT HUDEP-2 Platform: GPL16791 Series: GSE74977 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430687 Sample Accession: GSM1939568 ID: 301939568 17963. ATAC-seq WT HUDEP SFEM rep1 Organism: Homo sapiens Source name: WT HUDEP-2 Platform: GPL16791 Series: GSE74977 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1939nnn/GSM1939567/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1430686 Sample Accession: GSM1939567 ID: 301939567 17964. 500_cell_ATAC-seq_with_EzTn5_Rep2 Organism: Homo sapiens Source name: GM12878 B-Lymphocytes Platform: GPL15520 Series: GSE72089 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1854nnn/GSM1854468/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156452 Sample Accession: GSM1854468 ID: 301854468 17965. 500_cell_ATAC-seq_with_EzTn5_Rep1 Organism: Homo sapiens Source name: GM12878 B-Lymphocytes Platform: GPL15520 Series: GSE72089 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1854nnn/GSM1854467/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156451 Sample Accession: GSM1854467 ID: 301854467 17966. 500_cell_ATAC-seq_with_Tn5059_Rep2 Organism: Homo sapiens Source name: GM12878 B-Lymphocytes Platform: GPL16791 Series: GSE72089 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1854nnn/GSM1854470/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156454 Sample Accession: GSM1854470 ID: 301854470 17967. 500_cell_ATAC-seq_with_Tn5059_Rep1 Organism: Homo sapiens Source name: GM12878 B-Lymphocytes Platform: GPL16791 Series: GSE72089 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1854nnn/GSM1854469/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1156453 Sample Accession: GSM1854469 ID: 301854469 17968. ATAC-seq Acinar3 Organism: Homo sapiens Source name: pancreatic islets Platform: GPL18573 Series: GSE76268 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1978nnn/GSM1978250/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1497367 Sample Accession: GSM1978250 ID: 301978250 17969. ATAC-seq Acinar2 Organism: Homo sapiens Source name: pancreatic islets Platform: GPL18573 Series: GSE76268 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1978nnn/GSM1978249/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1497366 Sample Accession: GSM1978249 ID: 301978249 17970. ATAC-seq Beta3 Organism: Homo sapiens Source name: pancreatic islets Platform: GPL18573 Series: GSE76268 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1978nnn/GSM1978248/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1497365 Sample Accession: GSM1978248 ID: 301978248 17971. ATAC-seq Beta2 Organism: Homo sapiens Source name: pancreatic islets Platform: GPL18573 Series: GSE76268 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1978nnn/GSM1978247/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1497364 Sample Accession: GSM1978247 ID: 301978247 17972. ATAC-seq Beta1 Organism: Homo sapiens Source name: pancreatic islets Platform: GPL18573 Series: GSE76268 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1978nnn/GSM1978246/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1497363 Sample Accession: GSM1978246 ID: 301978246 17973. ATAC-seq Alpha3 Organism: Homo sapiens Source name: pancreatic islets Platform: GPL18573 Series: GSE76268 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1978nnn/GSM1978245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1497362 Sample Accession: GSM1978245 ID: 301978245 17974. ATAC-seq Alpha2 Organism: Homo sapiens Source name: pancreatic islets Platform: GPL18573 Series: GSE76268 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1978nnn/GSM1978244/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1497361 Sample Accession: GSM1978244 ID: 301978244 17975. ATAC-seq Alpha1 Organism: Homo sapiens Source name: pancreatic islets Platform: GPL18573 Series: GSE76268 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1978nnn/GSM1978243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1497360 Sample Accession: GSM1978243 ID: 301978243 17976. EryA ATAC_seq Organism: Mus musculus Source name: EryA cells Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1973nnn/GSM1973012/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1482930 Sample Accession: GSM1973012 ID: 301973012 17977. ATAC_seq_Renilla_rep2_day0 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184106 Sample Accession: GSM1867738 ID: 301867738 17978. ATAC_seq_Renilla_rep1_day0 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184105 Sample Accession: GSM1867737 ID: 301867737 17979. ATAC_seq_Chaf1a.2122_rep2_day0 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184104 Sample Accession: GSM1867736 ID: 301867736 17980. ATAC_seq_Chaf1a.2122_rep1_day0 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184103 Sample Accession: GSM1867735 ID: 301867735 17981. ATAC_seq_Chaf1a.166_rep2_day0 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184102 Sample Accession: GSM1867734 ID: 301867734 17982. ATAC_seq_Chaf1a.166_rep1_day0 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184101 Sample Accession: GSM1867733 ID: 301867733 17983. ATAC_seq_Chaf1a.2122_rep2_day6 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184100 Sample Accession: GSM1867732 ID: 301867732 17984. ATAC_seq_Chaf1a.2122_rep1_day6 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184099 Sample Accession: GSM1867731 ID: 301867731 17985. ATAC_seq_Chaf1a.2122_rep2_day3 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184098 Sample Accession: GSM1867730 ID: 301867730 17986. ATAC_seq_Chaf1a.2122_rep1_day3 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1184097 Sample Accession: GSM1867729 ID: 301867729 17987. ATAC_seq_iPSC Organism: Mus musculus Source name: iPSCs derived from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897940 Sample Accession: GSM1624625 ID: 301624625 17988. ATAC_seq_Renilla_rep2_day6 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897939 Sample Accession: GSM1624624 ID: 301624624 17989. ATAC_seq_Renilla_rep1_day6 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897938 Sample Accession: GSM1624623 ID: 301624623 17990. ATAC_seq_Renilla_rep2_day3 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897937 Sample Accession: GSM1624622 ID: 301624622 17991. ATAC_seq_Renilla_rep1_day3 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897936 Sample Accession: GSM1624621 ID: 301624621 17992. ATAC_seq_Chaf1a.166_rep2_day6 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897935 Sample Accession: GSM1624620 ID: 301624620 17993. ATAC_seq_Chaf1a.166_rep1_day6 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897934 Sample Accession: GSM1624619 ID: 301624619 17994. ATAC_seq_Chaf1a.166_rep2_day3 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897933 Sample Accession: GSM1624618 ID: 301624618 17995. ATAC_seq_Chaf1a.166_rep1_day3 Organism: Mus musculus Source name: OKSM reprogramming intermediates from Mouse Embryonic Fibroblasts Platform: GPL17021 Series: GSE66534 GSE72744 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX897932 Sample Accession: GSM1624617 ID: 301624617 17996. M3_input ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982592 Sample Accession: GSM1652459 ID: 301652459 17997. M3 ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1652nnn/GSM1652458/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982591 Sample Accession: GSM1652458 ID: 301652458 17998. M2_input ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982590 Sample Accession: GSM1652457 ID: 301652457 17999. M2 ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1652nnn/GSM1652456/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982589 Sample Accession: GSM1652456 ID: 301652456 18000. M1_input ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982588 Sample Accession: GSM1652455 ID: 301652455 18001. M1 ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1652nnn/GSM1652454/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982587 Sample Accession: GSM1652454 ID: 301652454 18002. E3_input ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982586 Sample Accession: GSM1652453 ID: 301652453 18003. E3 ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1652nnn/GSM1652452/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982585 Sample Accession: GSM1652452 ID: 301652452 18004. E2_input ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982584 Sample Accession: GSM1652451 ID: 301652451 18005. E2 ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1652nnn/GSM1652450/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982583 Sample Accession: GSM1652450 ID: 301652450 18006. E1 ATAC Seq Organism: Homo sapiens Source name: GBM primary culture G514NS Platform: GPL16791 Series: GSE67633 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1652nnn/GSM1652448/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX982581 Sample Accession: GSM1652448 ID: 301652448 18007. ATAC-seq Pre-PB [25430] Organism: Mus musculus Source name: ATAC-seq Pre-PB Platform: GPL17021 Series: GSE71698 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1843nnn/GSM1843339/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1131937 Sample Accession: GSM1843339 ID: 301843339 18008. ATAC-seq Pre-PB [25427] Organism: Mus musculus Source name: ATAC-seq Pre-PB Platform: GPL17021 Series: GSE71698 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1843nnn/GSM1843338/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1131936 Sample Accession: GSM1843338 ID: 301843338 18009. ATAC-seq PB [25428] Organism: Mus musculus Source name: ATAC-seq PB Platform: GPL17021 Series: GSE71698 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1843nnn/GSM1843337/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1131935 Sample Accession: GSM1843337 ID: 301843337 18010. ATAC-seq Act B cell [25429] Organism: Mus musculus Source name: ATAC-seq Act B cell Platform: GPL17021 Series: GSE71698 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1843nnn/GSM1843336/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1131934 Sample Accession: GSM1843336 ID: 301843336 18011. ATAC-seq Act B cell [25426] Organism: Mus musculus Source name: ATAC-seq Act B cell Platform: GPL17021 Series: GSE71698 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1843nnn/GSM1843335/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1131933 Sample Accession: GSM1843335 ID: 301843335 18012. CTRL_ATAC_rep2 Organism: Homo sapiens Source name: human keratinoctyes with Ctrl si Platform: GPL16791 Series: GSE67382 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1645nnn/GSM1645709/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX971580 Sample Accession: GSM1645709 ID: 301645709 18013. CTRL_ATAC_rep1 Organism: Homo sapiens Source name: human keratinoctyes with Ctrl si Platform: GPL16791 Series: GSE67382 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1645nnn/GSM1645708/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX971579 Sample Accession: GSM1645708 ID: 301645708 18014. BAFi_ATAC_rep2 Organism: Homo sapiens Source name: human keratinoctyes with Brg1/Brm si Platform: GPL16791 Series: GSE67382 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1645nnn/GSM1645707/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX971578 Sample Accession: GSM1645707 ID: 301645707 18015. BAFi_ATAC_rep1 Organism: Homo sapiens Source name: human keratinoctyes with Brg1/Brm si Platform: GPL16791 Series: GSE67382 FTP download: GEO (NARROWPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1645nnn/GSM1645706/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX971577 Sample Accession: GSM1645706 ID: 301645706 18016. Atac-seq_4hpf Organism: Danio rerio Source name: zebrafish embryos Platform: GPL18413 Series: GSE74231 GSE74617 FTP download: GEO (BED, COD) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1915nnn/GSM1915040/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1360672 Sample Accession: GSM1915040 ID: 301915040 18017. CB553_SMC1A_MUT_Rep2 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888541/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261667 Sample Accession: GSM1888541 ID: 301888541 18018. CB553_SMC1A_WT_Rep2 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888540/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261666 Sample Accession: GSM1888540 ID: 301888540 18019. CB553_EV_Rep2 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888539/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261665 Sample Accession: GSM1888539 ID: 301888539 18020. CB552_SMC1A_MUT_Rep1 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888538/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261664 Sample Accession: GSM1888538 ID: 301888538 18021. CB552_SMC1A_WT_Rep1 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888537/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261663 Sample Accession: GSM1888537 ID: 301888537 18022. CB552_EV_Rep1 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888536/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261662 Sample Accession: GSM1888536 ID: 301888536 18023. CB551_RAD21_MUT_Rep2 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888535/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261661 Sample Accession: GSM1888535 ID: 301888535 18024. CB551_RAD21_WT_Rep2 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888534/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261660 Sample Accession: GSM1888534 ID: 301888534 18025. CB551_EV_Rep2 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888533/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261659 Sample Accession: GSM1888533 ID: 301888533 18026. CB550_RAD21_MUT_Rep1 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888532/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261658 Sample Accession: GSM1888532 ID: 301888532 18027. CB550_RAD21_WT_Rep1 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888531/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261657 Sample Accession: GSM1888531 ID: 301888531 18028. CB550_EV_Rep1 Organism: Homo sapiens Source name: human CD34+ HSPC Platform: GPL18573 Series: GSE73206 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1888nnn/GSM1888530/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1261656 Sample Accession: GSM1888530 ID: 301888530 18029. Stag2-2 [ATAC-seq] Organism: Mus musculus Source name: LSK cells, Stag2 knockdown Platform: GPL17021 Series: GSE72367 GSE72370 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1164363 Sample Accession: GSM1861109 ID: 301861109 18030. Stag2-1 [ATAC-seq] Organism: Mus musculus Source name: LSK cells, Stag2 knockdown Platform: GPL17021 Series: GSE72367 GSE72370 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1164362 Sample Accession: GSM1861108 ID: 301861108 18031. Ren-2 [ATAC-seq] Organism: Mus musculus Source name: LSK cells, Renilla knockdown Platform: GPL17021 Series: GSE72367 GSE72370 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1164361 Sample Accession: GSM1861107 ID: 301861107 18032. Ren-1 [ATAC-seq] Organism: Mus musculus Source name: LSK cells, Renilla knockdown Platform: GPL17021 Series: GSE72367 GSE72370 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1164360 Sample Accession: GSM1861106 ID: 301861106 18033. WT4_R1 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545328/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759807 Sample Accession: GSM1545328 ID: 301545328 18034. WT3_R1 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545327/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759806 Sample Accession: GSM1545327 ID: 301545327 18035. Mut6_R1 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545326/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759805 Sample Accession: GSM1545326 ID: 301545326 18036. Mut5_R1 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545325/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759804 Sample Accession: GSM1545325 ID: 301545325 18037. Input_replicate2 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759803 Sample Accession: GSM1545324 ID: 301545324 18038. Input_replicate1 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759802 Sample Accession: GSM1545323 ID: 301545323 18039. H3S10pK14Ac_replicate2 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545322/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759801 Sample Accession: GSM1545322 ID: 301545322 18040. H3S10pK14Ac_replicate1 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545321/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759800 Sample Accession: GSM1545321 ID: 301545321 18041. H3K9Ac_replicate2 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545320/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759799 Sample Accession: GSM1545320 ID: 301545320 18042. H3K9Ac_replicate1 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545319/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759798 Sample Accession: GSM1545319 ID: 301545319 18043. Brwd1_replicate2 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545318/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759797 Sample Accession: GSM1545318 ID: 301545318 18044. Brwd1_replicate1 Organism: Mus musculus Source name: small pre-B cells Platform: GPL13112 Series: GSE63302 FTP download: GEO (BED, BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1545nnn/GSM1545317/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX759796 Sample Accession: GSM1545317 ID: 301545317 18045. ATAC-seq of 50 thousand K562 cells - replicate 2 Organism: Homo sapiens Source name: K562 cells Platform: GPL11154 Series: GSE70482 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782765/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1080065 Sample Accession: GSM1782765 ID: 301782765 18046. ATAC-seq of 50 thousand K562 cells - replicate 1 Organism: Homo sapiens Source name: K562 cells Platform: GPL11154 Series: GSE70482 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1782nnn/GSM1782764/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1080064 Sample Accession: GSM1782764 ID: 301782764 18047. PM_ATAC-Seq Organism: Mus musculus Source name: Primary proliferating myoblasts Platform: GPL17021 Series: GSE56131 GSE63573 FTP download: GEO (BROADPEAK) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1552nnn/GSM1552830/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX766230 Sample Accession: GSM1552830 ID: 301552830 18048. UCH2_2 Organism: Homo sapiens Source name: UCH2 Platform: GPL11154 Series: GSE70771 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1818nnn/GSM1818002/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1091842 Sample Accession: GSM1818002 ID: 301818002 18049. UCH2_1 Organism: Homo sapiens Source name: UCH2 Platform: GPL11154 Series: GSE70771 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1818nnn/GSM1818001/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1091841 Sample Accession: GSM1818001 ID: 301818001 18050. MUGCHOR Organism: Homo sapiens Source name: MUGCHOR Platform: GPL11154 Series: GSE70771 FTP download: GEO (WIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1818nnn/GSM1818000/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX1091840 Sample Accession: GSM1818000 ID: 301818000 18051. ATAC-seq_VIP_neurons_rep2 Organism: Mus musculus Source name: Vasoactive intestinal peptide-positive inhibitory neurons from mouse neocortex Platform: GPL17021 Series: GSE63137 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1541nnn/GSM1541969/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX757077 Sample Accession: GSM1541969 ID: 301541969 18052. ATAC-seq_VIP_neurons_rep1 Organism: Mus musculus Source name: Vasoactive intestinal peptide-positive inhibitory neurons from mouse neocortex Platform: GPL17021 Series: GSE63137 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1541nnn/GSM1541968/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX757076 Sample Accession: GSM1541968 ID: 301541968 18053. ATAC-seq_PV_neurons_rep2 Organism: Mus musculus Source name: Parvalbumin-positive inhibitory neurons from mouse neocortex Platform: GPL17021 Series: GSE63137 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1541nnn/GSM1541967/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX757075 Sample Accession: GSM1541967 ID: 301541967 18054. ATAC-seq_PV_neurons_rep1 Organism: Mus musculus Source name: Parvalbumin-positive inhibitory neurons from mouse neocortex Platform: GPL17021 Series: GSE63137 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1541nnn/GSM1541966/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX757074 Sample Accession: GSM1541966 ID: 301541966 18055. ATAC-seq_excitatory_neurons_rep2 Organism: Mus musculus Source name: Excitatory pyramidal neurons from mouse neocortex Platform: GPL17021 Series: GSE63137 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1541nnn/GSM1541965/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX757073 Sample Accession: GSM1541965 ID: 301541965 18056. ATAC-seq_excitatory_neurons_rep1 Organism: Mus musculus Source name: Excitatory pyramidal neurons from mouse neocortex Platform: GPL17021 Series: GSE63137 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1541nnn/GSM1541964/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX757072 Sample Accession: GSM1541964 ID: 301541964 18057. DC_NI (ATAC-Seq) Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE64173 GSE64183 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1565nnn/GSM1565735/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX818172 Sample Accession: GSM1565735 ID: 301565735 18058. DC_MTB (ATAC-Seq) Organism: Homo sapiens Source name: Monocyte-derived dendritic cells Platform: GPL16791 Series: GSE64173 GSE64183 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1565nnn/GSM1565734/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX818171 Sample Accession: GSM1565734 ID: 301565734 18059. ATAC ProB ko 2 Organism: Mus musculus Source name: Cultured ProB Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957815 Sample Accession: GSM1635410 ID: 301635410 18060. ATAC ProB Ctrl 2 Organism: Mus musculus Source name: Cultured ProB Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957814 Sample Accession: GSM1635409 ID: 301635409 18061. ATAC ProB ko 1 Organism: Mus musculus Source name: Cultured ProB Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957813 Sample Accession: GSM1635408 ID: 301635408 18062. ATAC ProB Ctrl 1 Organism: Mus musculus Source name: Cultured ProB Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957812 Sample Accession: GSM1635407 ID: 301635407 18063. ATAC BLP ko 2 Organism: Mus musculus Source name: Sorted BLP Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957811 Sample Accession: GSM1635406 ID: 301635406 18064. ATAC ALP ko 2 Organism: Mus musculus Source name: Sorted ALP Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957810 Sample Accession: GSM1635405 ID: 301635405 18065. ATAC BLP Ctrl 2 Organism: Mus musculus Source name: Sorted BLP Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957809 Sample Accession: GSM1635404 ID: 301635404 18066. ATAC ALP Ctrl 2 Organism: Mus musculus Source name: Sorted ALP Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957808 Sample Accession: GSM1635403 ID: 301635403 18067. ATAC BLP ko 1 Organism: Mus musculus Source name: Sorted BLP Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957807 Sample Accession: GSM1635402 ID: 301635402 18068. ATAC ALP ko 1 Organism: Mus musculus Source name: Sorted ALP Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957806 Sample Accession: GSM1635401 ID: 301635401 18069. ATAC BLP Ctrl 1 Organism: Mus musculus Source name: Sorted BLP Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957805 Sample Accession: GSM1635400 ID: 301635400 18070. ATAC ALP Ctrl 1 Organism: Mus musculus Source name: Sorted ALP Platform: GPL17021 Series: GSE66978 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX957804 Sample Accession: GSM1635399 ID: 301635399 18071. ATAC-Seq from v6.5 embryonic stem cells Organism: Mus musculus Source name: mouse embryonic stem cells Platform: GPL18480 Series: GSE67298 GSE67299 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1644nnn/GSM1644021/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX969072 Sample Accession: GSM1644021 ID: 301644021 18072. ATAC-Seq from induced pluripotent stem cells Organism: Mus musculus Source name: mouse induced pluripotent stem cells Platform: GPL18480 Series: GSE67298 GSE67299 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1644nnn/GSM1644020/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX969071 Sample Accession: GSM1644020 ID: 301644020 18073. ATAC-Seq from day 9 of OSKM trans-differentiation to Neural Stem Cells Organism: Mus musculus Source name: day 6 of OSKM-trans differentiation to Neural Stem Cells Platform: GPL18480 Series: GSE67298 GSE67299 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1644nnn/GSM1644019/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX969070 Sample Accession: GSM1644019 ID: 301644019 18074. ATAC-Seq from Mouse Embryonic Fibroblasts Organism: Mus musculus Source name: mouse embryonic fibroblasts Platform: GPL18480 Series: GSE67298 GSE67299 FTP download: GEO (BED) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1644nnn/GSM1644018/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX969069 Sample Accession: GSM1644018 ID: 301644018 18075. S. pombe_20M_20min Organism: Schizosaccharomyces pombe Source name: Schizosaccharomyces pombe cells Platform: GPL16192 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893735 Sample Accession: GSM1621338 ID: 301621338 18076. S. pombe_5M_20min Organism: Schizosaccharomyces pombe Source name: Schizosaccharomyces pombe cells Platform: GPL16192 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893734 Sample Accession: GSM1621337 ID: 301621337 18077. S. pombe_20M_5min Organism: Schizosaccharomyces pombe Source name: Schizosaccharomyces pombe cells Platform: GPL16192 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893733 Sample Accession: GSM1621336 ID: 301621336 18078. S. pombe_5M_5min Organism: Schizosaccharomyces pombe Source name: Schizosaccharomyces pombe cells Platform: GPL16192 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893732 Sample Accession: GSM1621335 ID: 301621335 18079. S. pombe_1M_5min Organism: Schizosaccharomyces pombe Source name: Schizosaccharomyces pombe cells Platform: GPL16192 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893731 Sample Accession: GSM1621334 ID: 301621334 18080. GM12878_GSM1155960 Organism: Homo sapiens Source name: GM12878 cells Platform: GPL11154 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893751 Sample Accession: GSM1621354 ID: 301621354 18081. GM12878_GSM1155959 Organism: Homo sapiens Source name: GM12878 cells Platform: GPL11154 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893750 Sample Accession: GSM1621353 ID: 301621353 18082. GM12878_GSM1155958 Organism: Homo sapiens Source name: GM12878 cells Platform: GPL11154 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893749 Sample Accession: GSM1621352 ID: 301621352 18083. GM12878_GSM1155957 Organism: Homo sapiens Source name: GM12878 cells Platform: GPL11154 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893748 Sample Accession: GSM1621351 ID: 301621351 18084. Osmotic Stress Time 60 F rep2 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893747 Sample Accession: GSM1621350 ID: 301621350 18085. Osmotic Stress Time 60 F rep1 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893746 Sample Accession: GSM1621349 ID: 301621349 18086. Osmotic Stress Time 45 E rep2 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cell Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893745 Sample Accession: GSM1621348 ID: 301621348 18087. Osmotic Stress Time 45 E rep1 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cell Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893744 Sample Accession: GSM1621347 ID: 301621347 18088. Osmotic Stress Time 30 D rep2 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893743 Sample Accession: GSM1621346 ID: 301621346 18089. Osmotic Stress Time 30 D rep1 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893742 Sample Accession: GSM1621345 ID: 301621345 18090. Osmotic Stress Time 15 C rep2 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893741 Sample Accession: GSM1621344 ID: 301621344 18091. Osmotic Stress Time 15 C rep1 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893740 Sample Accession: GSM1621343 ID: 301621343 18092. Osmotic Stress Time 0 B rep2 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893739 Sample Accession: GSM1621342 ID: 301621342 18093. Osmotic Stress Time 0 B rep1 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893738 Sample Accession: GSM1621341 ID: 301621341 18094. Osmotic Stress Time 0 A rep2 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893737 Sample Accession: GSM1621340 ID: 301621340 18095. Osmotic Stress Time 0 A rep1 Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL19756 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893736 Sample Accession: GSM1621339 ID: 301621339 18096. S. cerevisiae lin6c Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893730 Sample Accession: GSM1621333 ID: 301621333 18097. S. cerevisiae lin6b Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893729 Sample Accession: GSM1621332 ID: 301621332 18098. S. cerevisiae lin6a Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893728 Sample Accession: GSM1621331 ID: 301621331 18099. S. cerevisiae lin3c Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893727 Sample Accession: GSM1621330 ID: 301621330 18100. S. cerevisiae lin3b Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893726 Sample Accession: GSM1621329 ID: 301621329 18101. S. cerevisiae lin3a Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893725 Sample Accession: GSM1621328 ID: 301621328 18102. S. cerevisiae lin2c Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893724 Sample Accession: GSM1621327 ID: 301621327 18103. S. cerevisiae lin2b Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893723 Sample Accession: GSM1621326 ID: 301621326 18104. S. cerevisiae lin2a Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893722 Sample Accession: GSM1621325 ID: 301621325 18105. S. cerevisiae lin0c Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893721 Sample Accession: GSM1621324 ID: 301621324 18106. S. cerevisiae lin0a Organism: Saccharomyces cerevisiae Source name: Saccharomyces cerevisiae cells Platform: GPL17582 Series: GSE66386 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX893720 Sample Accession: GSM1621323 ID: 301621323 18107. ATACseq_shSuv39h1_EPZ4777 Organism: Mus musculus Source name: Murine MLL-AF9 leukemic cells Platform: GPL13112 Series: GSE61016 GSE61022 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1495nnn/GSM1495573/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX691069 Sample Accession: GSM1495573 ID: 301495573 18108. ATACseq_shSuv39h1_DMSO Organism: Mus musculus Source name: Murine MLL-AF9 leukemic cells Platform: GPL13112 Series: GSE61016 GSE61022 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1495nnn/GSM1495572/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX691068 Sample Accession: GSM1495572 ID: 301495572 18109. ATACseq_shSirt1_EPZ4777 Organism: Mus musculus Source name: Murine MLL-AF9 leukemic cells Platform: GPL13112 Series: GSE61016 GSE61022 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1495nnn/GSM1495571/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX691067 Sample Accession: GSM1495571 ID: 301495571 18110. ATACseq_shSirt1_DMSO Organism: Mus musculus Source name: Murine MLL-AF9 leukemic cells Platform: GPL13112 Series: GSE61016 GSE61022 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1495nnn/GSM1495570/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX691066 Sample Accession: GSM1495570 ID: 301495570 18111. ATACseq_shLUC_EPZ4777 Organism: Mus musculus Source name: Murine MLL-AF9 leukemic cells Platform: GPL13112 Series: GSE61016 GSE61022 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1495nnn/GSM1495569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX691065 Sample Accession: GSM1495569 ID: 301495569 18112. ATACseq_shLUC_DMSO Organism: Mus musculus Source name: Murine MLL-AF9 leukemic cells Platform: GPL13112 Series: GSE61016 GSE61022 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1495nnn/GSM1495568/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX691064 Sample Accession: GSM1495568 ID: 301495568 18113. RJ2.2.5 ATACseq (paired-end) Organism: Homo sapiens Source name: RJ2.2.5 cells Platform: GPL16791 Series: GSE52941 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX865424 Sample Accession: GSM1602246 ID: 301602246 18114. RJ2.2.5 ATACseq Organism: Homo sapiens Source name: RJ2.2.5 cells Platform: GPL16791 Series: GSE52941 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1602nnn/GSM1602245/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX865423 Sample Accession: GSM1602245 ID: 301602245 18115. Raji ATACseq (paired-end) Organism: Homo sapiens Source name: Raji cells Platform: GPL16791 Series: GSE52941 FTP download: SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX865422 Sample Accession: GSM1602244 ID: 301602244 18116. Raji ATACseq Organism: Homo sapiens Source name: Raji cells Platform: GPL16791 Series: GSE52941 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1602nnn/GSM1602243/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX865421 Sample Accession: GSM1602243 ID: 301602243 18117. mES ATAC-Seq Organism: Mus musculus Source name: Embryonic Stem Cells Platform: GPL13112 Series: GSE64058 GSE64059 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1563nnn/GSM1563569/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX804109 Sample Accession: GSM1563569 ID: 301563569 18118. pDC_ATAC Organism: Mus musculus Source name: 09_ATAC_pDC_1 Platform: GPL18480 Series: GSE62703 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1531nnn/GSM1531751/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX742901 Sample Accession: GSM1531751 ID: 301531751 18119. moDC_ATAC Organism: Mus musculus Source name: 07_ATAC_moDC_1 Platform: GPL18480 Series: GSE62703 FTP download: GEO (TDF) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1531nnn/GSM1531750/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX742900 Sample Accession: GSM1531750 ID: 301531750 18120. P10.5 Morc1 KO ATAC-seq Replicate 1 Organism: Mus musculus Source name: P10.5 sorted germ cells Platform: GPL13112 Series: GSE63048 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1550nnn/GSM1550788/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX764275 Sample Accession: GSM1550788 ID: 301550788 18121. P10.5 Morc1 het ATAC-seq Replicate 1 Organism: Mus musculus Source name: P10.5 sorted germ cells Platform: GPL13112 Series: GSE63048 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1550nnn/GSM1550787/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX764274 Sample Accession: GSM1550787 ID: 301550787 18122. E16.5 Morc1 het ATAC-seq (Naked DNA) Organism: Mus musculus Source name: E16.5 sorted germ cells Platform: GPL17021 Series: GSE63048 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1550nnn/GSM1550786/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX764273 Sample Accession: GSM1550786 ID: 301550786 18123. E16.5 Morc1 KO ATAC-seq Replicate 1 Organism: Mus musculus Source name: E16.5 sorted germ cells Platform: GPL17021 Series: GSE63048 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1550nnn/GSM1550785/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX764272 Sample Accession: GSM1550785 ID: 301550785 18124. E16.5 Morc1 het ATAC-seq Replicate 1 Organism: Mus musculus Source name: E16.5 sorted germ cells Platform: GPL17021 Series: GSE63048 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1550nnn/GSM1550784/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX764271 Sample Accession: GSM1550784 ID: 301550784 18125. ATAC-seq (Nutlin-3a) Organism: Homo sapiens Source name: IMR90 fetal lung fibroblasts Platform: GPL18573 Series: GSE58740 FTP download: GEO (BED, BEDGRAPH, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1418nnn/GSM1418976/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX620753 Sample Accession: GSM1418976 ID: 301418976 18126. ATAC-seq (DMSO) Organism: Homo sapiens Source name: IMR90 fetal lung fibroblasts Platform: GPL18573 Series: GSE58740 FTP download: GEO (BED, BEDGRAPH, BIGWIG, TXT) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1418nnn/GSM1418975/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX620752 Sample Accession: GSM1418975 ID: 301418975 18127. ATAC-seq MCS pLIV EWS-FLI1 Organism: Homo sapiens Source name: MSC Platform: GPL16791 Series: GSE61951 GSE61953 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1517nnn/GSM1517634/ Sample Accession: GSM1517634 ID: 301517634 18128. ATAC-Seq MSC pLIV empty Organism: Homo sapiens Source name: MSC Platform: GPL16791 Series: GSE61951 GSE61953 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1517nnn/GSM1517633/ Sample Accession: GSM1517633 ID: 301517633 18129. ATAC-Seq SKNMC Organism: Homo sapiens Source name: SKNMC cells Platform: GPL16791 Series: GSE61951 GSE61953 FTP download: GEO (BW) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1517nnn/GSM1517632/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX718183 Sample Accession: GSM1517632 ID: 301517632 18130. MEP ATAC_seq Organism: Mus musculus Source name: Megakaryocitic erythroyd progenitor (MEP) Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463181/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667511 Sample Accession: GSM1463181 ID: 301463181 18131. CMP ATAC_seq Organism: Mus musculus Source name: Common Myeloid Progenitor (CMP) Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463180/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667510 Sample Accession: GSM1463180 ID: 301463180 18132. Lsk ATAC_seq Organism: Mus musculus Source name: Lin-Sca1+Kit- bone marrow cells Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463179/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667509 Sample Accession: GSM1463179 ID: 301463179 18133. CD8 ATAC_seq Organism: Mus musculus Source name: T CD8+ cells Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463178/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667508 Sample Accession: GSM1463178 ID: 301463178 18134. NK ATAC_seq Organism: Mus musculus Source name: NK Cells Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463177/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667507 Sample Accession: GSM1463177 ID: 301463177 18135. Granulocytes ATAC_seq Organism: Mus musculus Source name: Granulocytes Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463176/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667506 Sample Accession: GSM1463176 ID: 301463176 18136. CD4 ATAC_seq Organism: Mus musculus Source name: T CD4+ cells Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463175/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667505 Sample Accession: GSM1463175 ID: 301463175 18137. Monocytes ATAC_seq Organism: Mus musculus Source name: Monocytes Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463174/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667504 Sample Accession: GSM1463174 ID: 301463174 18138. GMP ATAC_seq Organism: Mus musculus Source name: Granulocyte Monocyte Progenitor (GMP) Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463173/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667503 Sample Accession: GSM1463173 ID: 301463173 18139. B ATAC_seq Organism: Mus musculus Source name: B cells Platform: GPL18480 Series: GSE59992 GSE60103 FTP download: GEO (BIGWIG) ftp://ftp.ncbi.nlm.nih.gov/geo/samples/GSM1463nnn/GSM1463172/ SRA Run Selector: https://www.ncbi.nlm.nih.gov/Traces/study/?acc=SRX667502 Sample Accession: GSM1463172 ID: 301463172