/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks0.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks10.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks11.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks12.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks13.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks14.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks15.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks16.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks17.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks18.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks19.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks1.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks20.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks21.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks22.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks23.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks24.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks25.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks26.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks27.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks28.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks29.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks2.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks30.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks30.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks31.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks31.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks32.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks32.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks3.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks4.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks5.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks6.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks7.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks8.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_1.fastq.10M_chunks9.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep1-GSM5290395-SRR14511757_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks0.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks10.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks11.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks12.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks13.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks14.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks15.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks16.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks17.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks18.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks19.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks1.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks20.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks21.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks22.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks23.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks24.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks25.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks26.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks27.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks28.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks29.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks2.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks30.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks30.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks31.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks31.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks32.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks32.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks33.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks33.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks34.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks34.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks35.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks35.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks36.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks36.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks3.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks4.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks5.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks6.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks7.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks8.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_1.fastq.10M_chunks9.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_2h_Rep2-GSM5290396-SRR14511758_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks0.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks10.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks11.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks12.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks13.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks14.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks15.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks16.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks17.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks18.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks19.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks1.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks20.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks21.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks22.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks23.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks24.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks25.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks26.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks27.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks28.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks29.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks2.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks3.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks4.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks5.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks6.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks7.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks8.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_1.fastq.10M_chunks9.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep1-GSM5290399-SRR14511761_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks0.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks10.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks11.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks12.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks13.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks14.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks15.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks16.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks17.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks18.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks19.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks1.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks20.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks21.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks22.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks23.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks24.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks25.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks26.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks27.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks28.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks29.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks2.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks30.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks30.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks31.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks31.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks32.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks32.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks33.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks33.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks34.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks34.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks35.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks35.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks36.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks36.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks3.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks4.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks5.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks6.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks7.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks8.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_1.fastq.10M_chunks9.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_32h_Rep2-GSM5290400-SRR14511762_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks0.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks10.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks11.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks12.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks13.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks14.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks15.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks16.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks17.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks18.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks19.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks1.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks20.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks21.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks22.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks23.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks24.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks25.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks26.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks27.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks28.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks29.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks2.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks30.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks30.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks31.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks31.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks32.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks32.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks33.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks33.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks34.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks34.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks3.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks4.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks5.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks6.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks7.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks8.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_1.fastq.10M_chunks9.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep1-GSM5290397-SRR14511759_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks0.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks10.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks11.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks12.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks13.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks14.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks15.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks16.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks17.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks18.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks19.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks1.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks20.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks21.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks22.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks23.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks24.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks25.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks26.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks27.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks28.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks29.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks2.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks30.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks30.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks31.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks31.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks3.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks4.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks5.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks6.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks7.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks8.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_1.fastq.10M_chunks9.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_A485_6h_Rep2-GSM5290398-SRR14511760_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks0.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks10.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks11.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks12.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks13.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks14.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks15.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks16.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks17.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks18.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks19.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks1.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks20.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks21.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks22.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks23.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks24.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks25.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks26.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks27.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks28.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks29.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks2.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks30.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks30.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks31.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks31.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks32.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks32.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks33.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks33.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks34.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks34.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks35.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks35.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks3.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks4.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks5.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks6.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks7.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks8.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_1.fastq.10M_chunks9.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate1-GSM5290393-SRR14511755_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks0.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks10.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks11.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks12.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks13.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks14.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks15.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks16.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks17.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks18.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks19.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks1.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks20.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks21.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks22.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks23.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks24.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks25.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks26.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks27.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks28.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks29.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks2.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks30.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks30.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks31.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks31.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks32.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks32.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks3.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks4.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks5.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks6.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks7.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks8.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_1.fastq.10M_chunks9.gz 01-Homo_sapiens-MM1S-GSE174264-MM1S_DMSO_Replicate2-GSM5290394-SRR14511756_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks0.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks10.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks11.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks12.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks13.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks14.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks15.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks1.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks2.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks3.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks4.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks5.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks6.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks7.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks8.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_1.fastq.10M_chunks9.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567411_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks0.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks10.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks11.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks12.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks13.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks14.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks1.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks2.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks3.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks4.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks5.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks6.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks7.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks8.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_1.fastq.10M_chunks9.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM157-GSM1001126-SRR567412_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks0.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks10.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks11.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks12.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks13.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks14.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks15.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks1.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks2.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks3.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks4.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks5.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks6.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks7.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks8.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_1.fastq.10M_chunks9.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567413_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks0.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks10.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks11.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks12.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks13.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks14.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks15.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks1.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks2.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks3.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks4.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks5.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks6.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks7.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks8.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_1.fastq.10M_chunks9.gz 02-Homo_sapiens-IMR90_GBM-GSE40770-GBM248-GSM1001127-SRR567414_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks10.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks11.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks12.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks13.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks8.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_1.fastq.10M_chunks9.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282202_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks10.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks11.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks12.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks8.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_1.fastq.10M_chunks9.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-HMEC-GSM1383849-SRR1282203_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks10.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks11.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks12.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks13.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks14.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks8.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_1.fastq.10M_chunks9.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282204_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks10.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks11.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks8.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_1.fastq.10M_chunks9.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-MCF7-GSM1383850-SRR1282205_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks10.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks8.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_1.fastq.10M_chunks9.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282209_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks10.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks8.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_1.fastq.10M_chunks9.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282210_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PC3-GSM1383852-SRR1282211_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks10.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks11.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks12.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks13.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks8.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_1.fastq.10M_chunks9.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282206_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks10.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks7.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks8.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_1.fastq.10M_chunks9.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282207_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_1.fastq.10M_chunks0.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_1.fastq.10M_chunks1.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_1.fastq.10M_chunks2.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_1.fastq.10M_chunks3.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_1.fastq.10M_chunks4.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_1.fastq.10M_chunks5.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_1.fastq.10M_chunks6.gz 03-Homo_sapiens-HMEC_MCF7_PrEC_PC3-GSE57498-PrEC-GSM1383851-SRR1282208_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks0.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks10.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks11.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks12.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks13.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks14.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks15.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks16.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks17.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks18.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks1.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks2.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks3.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks4.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks5.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks6.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks7.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks8.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_1.fastq.10M_chunks9.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-LNCaP-GSM2474023-SRR5221410_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks0.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks10.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks11.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks12.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks13.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks14.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks15.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks16.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks17.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks18.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks19.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks1.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks20.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks21.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks22.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks23.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks2.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks3.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks4.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks5.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks6.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks7.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks8.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_1.fastq.10M_chunks9.gz 04-Homo_sapiens-LNCaP_PrEC-GSE94361-PrEC-GSM2474024-SRR5221411_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks0.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks10.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks11.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks12.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks13.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks14.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks15.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks16.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks17.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks18.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks19.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks19.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks1.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks20.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks20.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks21.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks21.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks22.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks22.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks23.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks23.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks24.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks24.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks25.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks25.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks26.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks26.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks27.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks27.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks28.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks28.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks29.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks29.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks2.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks30.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks30.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks31.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks31.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks32.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks32.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks3.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks4.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks5.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks6.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks7.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks8.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_1.fastq.10M_chunks9.gz 05-Homo_sapiens-RWPE1-GSE118629-RWPE1-GSM3564284-SRR8446415_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks0.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks10.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks11.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks12.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks13.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks14.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks15.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks16.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks1.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks2.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks3.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks4.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks5.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks6.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks7.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks8.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_1.fastq.10M_chunks9.gz 06-Homo_sapiens-C42B-GSE102616-C42B-GSM2741780-SRR5931675_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399-SRR3055263_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399-SRR3055263_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399-SRR3055263_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399-SRR3055263_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399-SRR3055263_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399-SRR3055263_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399-SRR3055263_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_1-GSM1981399-SRR3055263_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_2-GSM1981400-SRR3055264_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_2-GSM1981400-SRR3055264_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_2-GSM1981400-SRR3055264_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_2-GSM1981400-SRR3055264_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_2-GSM1981400-SRR3055264_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_2-GSM1981400-SRR3055264_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_2-GSM1981400-SRR3055264_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_16hr_2-GSM1981400-SRR3055264_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_1.fastq.10M_chunks4.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395-SRR3055259_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_1.fastq.10M_chunks4.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_2.-GSM1981396-SRR3055260_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_1.fastq.10M_chunks4.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_1-GSM1981397-SRR3055261_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_1.fastq.10M_chunks4.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_4hr_2-GSM1981398-SRR3055262_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_1.fastq.10M_chunks4.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_1-GSM1981393-SRR3055257_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_1.fastq.10M_chunks4.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_EtOH_2-GSM1981394-SRR3055258_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks10.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks11.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks12.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks13.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks14.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks15.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks16.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks17.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks18.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks18.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks4.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks5.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks6.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks7.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks8.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_1.fastq.10M_chunks9.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP-GSM1981391-SRR3055255_2.fastq.10M_chunks9.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks0.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks0.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks10.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks10.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks11.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks11.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks12.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks12.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks13.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks13.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks14.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks14.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks15.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks15.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks16.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks16.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks17.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks17.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks1.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks1.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks2.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks2.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks3.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks3.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks4.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks4.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks5.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks5.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks6.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks6.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks7.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks7.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks8.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks8.gz
/oak/stanford/groups/akundaje/marinovg/programs/trim_galore_v0.4.4/trim_galore --path_to_cutadapt ~/anaconda2/bin/cutadapt --clip_R1 9 --clip_R2 9 --three_prime_clip_r1 6 --three_prime_clip_r2 6 --paired 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_1.fastq.10M_chunks9.gz 07-Homo_sapiens-LNCaP_PrEC-GSE40770-PrEC-GSM1981392-SRR3055256_2.fastq.10M_chunks9.gz