## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395.trimgalore.bwameth.hg38.bam] OUTPUT=07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395.trimgalore.bwameth.hg38.dedup.bam METRICS_FILE=07-Homo_sapiens-LNCaP_PrEC-GSE40770-LNCaP_2hr_1-GSM1981395.trimgalore.bwameth.hg38.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Mon Jun 21 10:41:16 PDT 2021

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
	0	34264300	0	0	1206006	0	0.035197	475258376

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1
2.0	1.930441
3.0	2.796163
4.0	3.601666
5.0	4.351139
6.0	5.04848
7.0	5.697315
8.0	6.301018
9.0	6.862728
10.0	7.385366
11.0	7.871651
12.0	8.32411
13.0	8.745097
14.0	9.1368
15.0	9.501258
16.0	9.840364
17.0	10.155882
18.0	10.449453
19.0	10.722604
20.0	10.976755
21.0	11.213228
22.0	11.433252
23.0	11.637971
24.0	11.82845
25.0	12.00568
26.0	12.170582
27.0	12.324014
28.0	12.466773
29.0	12.599602
30.0	12.723192
31.0	12.838185
32.0	12.945179
33.0	13.044731
34.0	13.137358
35.0	13.223542
36.0	13.303731
37.0	13.378343
38.0	13.447764
39.0	13.512357
40.0	13.572457
41.0	13.628376
42.0	13.680406
43.0	13.728816
44.0	13.773859
45.0	13.815769
46.0	13.854764
47.0	13.891047
48.0	13.924805
49.0	13.956216
50.0	13.985441
51.0	14.012634
52.0	14.037935
53.0	14.061476
54.0	14.08338
55.0	14.10376
56.0	14.122723
57.0	14.140366
58.0	14.156783
59.0	14.172057
60.0	14.186269
61.0	14.199493
62.0	14.211796
63.0	14.223244
64.0	14.233895
65.0	14.243806
66.0	14.253027
67.0	14.261607
68.0	14.26959
69.0	14.277018
70.0	14.283929
71.0	14.290359
72.0	14.296342
73.0	14.301909
74.0	14.307088
75.0	14.311908
76.0	14.316392
77.0	14.320564
78.0	14.324446
79.0	14.328058
80.0	14.331419
81.0	14.334546
82.0	14.337455
83.0	14.340162
84.0	14.342681
85.0	14.345025
86.0	14.347205
87.0	14.349234
88.0	14.351122
89.0	14.352878
90.0	14.354513
91.0	14.356033
92.0	14.357448
93.0	14.358765
94.0	14.359989
95.0	14.361129
96.0	14.362189
97.0	14.363176
98.0	14.364094
99.0	14.364948
100.0	14.365743