python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.0.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.0.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.0.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.10.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.10.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.10.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.11.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.11.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.11.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.12.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.12.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.12.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.13.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.13.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.13.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.14.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.14.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.14.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.15.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.15.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.15.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.16.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.16.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.16.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.17.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.17.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.17.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.18.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.18.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.18.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.19.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.19.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.19.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.1.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.1.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.1.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.20.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.20.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.20.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.21.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.21.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.21.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.22.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.22.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.22.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.23.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.23.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.23.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.24.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.24.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.24.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.25.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.25.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.25.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.26.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.26.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.26.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.27.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.27.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.27.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.28.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.28.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.28.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.29.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.29.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.29.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.2.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.2.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.2.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.30.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.30.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.30.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.31.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.31.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.31.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.3.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.3.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.3.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.4.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.4.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.4.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.5.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.5.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.5.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.6.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.6.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.6.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.7.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.7.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.7.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.8.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.8.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.8.tombo.BI_w10_a10_b10.reads.tsv
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/methylation-reads-tsv-to_coverage.py 2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.9.tombo.generic-A-C-T-G.reads.tsv 0.5 pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.9.tombo.generic-A-C-T-G.min_p_val0.4.cutoff_0.5.coverage.BI_w10_a10_b10 -minAbsPValue 0.4 -BayesianIntegration 10 1 10 10 50 -saveNewSingleMoleculeFile pieces-2019_12_24_S2_SMAC_Alky_KAS_Seq_Human.9.tombo.BI_w10_a10_b10.reads.tsv