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python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/100.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.100.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/101.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.101.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/102.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.102.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/103.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.103.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/104.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.104.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/105.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.105.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/106.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.106.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/107.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.107.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/108.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.108.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/109.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.109.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/10.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.10.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/110.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.110.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/111.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.111.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/112.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.112.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/113.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.113.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/114.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.114.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/115.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.115.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/116.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.116.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/117.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.117.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/118.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.118.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/119.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.119.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/11.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.11.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/120.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.120.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/121.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.121.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/122.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.122.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/123.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.123.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/124.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.124.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/125.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.125.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/126.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.126.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/127.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.127.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/128.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.128.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/12.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.12.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/130.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.130.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/131.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.131.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/132.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.132.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/133.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.133.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/134.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.134.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/135.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.135.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/136.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.136.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/137.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.137.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/138.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.138.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/139.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.139.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/13.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.13.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/140.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.140.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/141.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.141.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/142.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.142.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/143.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.143.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/144.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.144.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/145.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.145.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/146.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.146.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/147.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.147.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/148.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.148.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/149.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.149.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/14.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.14.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/150.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.150.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/151.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.151.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/152.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.152.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/153.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.153.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/154.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.154.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/155.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.155.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/156.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.156.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/157.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.157.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/158.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.158.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/159.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.159.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/15.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.15.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/160.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.160.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/161.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.161.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/162.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.162.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/163.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.163.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/164.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.164.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/165.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.165.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/166.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.166.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/167.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.167.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/168.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.168.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/169.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.169.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/16.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.16.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/170.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.170.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/171.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.171.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/172.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.172.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/173.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.173.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/174.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.174.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/175.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.175.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/176.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.176.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/177.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.177.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/178.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.178.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/179.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.179.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/17.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.17.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/180.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.180.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/18.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.18.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/19.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.19.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/1.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.1.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/20.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.20.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/21.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.21.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/22.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.22.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/23.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.23.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/24.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.24.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/25.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.25.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/26.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.26.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/27.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.27.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/28.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.28.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/29.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.29.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/2.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.2.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/30.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.30.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/31.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.31.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/32.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.32.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/33.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.33.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/35.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.35.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/36.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.36.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/37.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.37.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/38.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.38.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/39.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.39.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/3.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.3.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/40.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.40.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/41.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.41.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/42.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.42.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/43.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.43.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/44.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.44.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/45.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.45.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/46.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.46.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/47.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.47.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/48.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.48.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/49.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.49.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/4.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.4.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/50.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.50.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/51.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.51.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/52.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.52.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/53.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.53.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/54.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.54.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/55.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.55.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/56.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.56.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/57.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.57.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/58.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.58.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/59.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.59.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/5.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.5.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/60.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.60.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/61.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.61.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/62.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.62.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/63.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.63.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/64.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.64.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/65.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.65.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/66.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.66.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/67.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.67.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/68.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.68.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/69.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.69.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/6.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.6.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/70.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.70.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/71.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.71.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/72.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.72.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/73.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.73.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/74.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.74.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/75.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.75.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/76.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.76.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/77.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.77.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/78.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.78.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/79.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.79.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/7.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.7.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/80.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.80.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/81.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.81.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/82.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.82.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/83.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.83.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/84.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.84.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/85.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.85.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/86.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.86.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/87.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.87.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/88.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.88.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/89.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.89.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/8.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.8.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/90.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.90.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/91.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.91.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/92.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.92.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/93.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.93.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/94.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.94.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/95.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.95.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/96.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.96.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/97.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.97.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/98.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.98.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/99.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.99.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/output/tombo_denovo/9.tombo.per_read_stats /oak/stanford/groups/wjg/zshipony/Nanopore/2019_09_27_Georgi/Tetrahymena_thermophila.JCVI-TTA1-2.2.20.FINAL.fasta 2019_09_27_Georgi_Tetrahymena.9.tombo.m6A-only -m6A-only