python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/0.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.0.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1000.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1000.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1001.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1001.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1002.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1002.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1003.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1003.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1004.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1004.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1005.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1005.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1006.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1006.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1007.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1007.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1008.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1008.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1009.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1009.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/100.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.100.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1010.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1010.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1011.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1011.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1012.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1012.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1013.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1013.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1014.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1014.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1015.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1015.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1016.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1016.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1017.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1017.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1018.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1018.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1019.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1019.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/101.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.101.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1020.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1020.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1021.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1021.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1022.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1022.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1023.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1023.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1024.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1024.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1025.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1025.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1026.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1026.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1027.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1027.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1028.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1028.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1029.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1029.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/102.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.102.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1030.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1030.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1031.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1031.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1032.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1032.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1033.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1033.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1034.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1034.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1035.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1035.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1036.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1036.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1037.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1037.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1038.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1038.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1039.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1039.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/103.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.103.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1040.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1040.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1041.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1041.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1042.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1042.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1043.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1043.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1044.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1044.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1045.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1045.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1046.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1046.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1047.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1047.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1048.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1048.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1049.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1049.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/104.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.104.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1050.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1050.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1051.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1051.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1052.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1052.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1053.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1053.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1054.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1054.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1055.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1055.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1056.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1056.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1057.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1057.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1058.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1058.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1059.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1059.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/105.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.105.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1060.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1060.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1061.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1061.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1062.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1062.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1063.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1063.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1064.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1064.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1065.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1065.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1066.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1066.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1067.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1067.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1068.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1068.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1069.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1069.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/106.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.106.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1070.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1070.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1071.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1071.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1072.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1072.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1073.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1073.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1074.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1074.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1075.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1075.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1076.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1076.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1077.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1077.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1078.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1078.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1079.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1079.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/107.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.107.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1080.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1080.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1081.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1081.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1082.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1082.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1083.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1083.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1084.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1084.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1085.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1085.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1086.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1086.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1087.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1087.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1088.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1088.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1089.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1089.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/108.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.108.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1090.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1090.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1091.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1091.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1092.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1092.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1093.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1093.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1094.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1094.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1095.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1095.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1096.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1096.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1097.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1097.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1098.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1098.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1099.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1099.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/109.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.109.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/10.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.10.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1100.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1100.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1101.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1101.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1102.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1102.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1103.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1103.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1104.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1104.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1105.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1105.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1106.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1106.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1107.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1107.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1108.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1108.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1109.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1109.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/110.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.110.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1110.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1110.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1111.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1111.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1112.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1112.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1113.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1113.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1114.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1114.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1115.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1115.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1116.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1116.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1117.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1117.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1118.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1118.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1119.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1119.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/111.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.111.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1120.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1120.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1121.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1121.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1122.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1122.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1123.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1123.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1124.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1124.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1125.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1125.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1126.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1126.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1127.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1127.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1128.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1128.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1129.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1129.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/112.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.112.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1130.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1130.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1131.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1131.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1132.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1132.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1133.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1133.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1134.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1134.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1135.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1135.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1136.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1136.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1137.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1137.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1138.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1138.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1139.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1139.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/113.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.113.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1140.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1140.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1141.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1141.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1142.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1142.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1143.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1143.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1144.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1144.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1145.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1145.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1146.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1146.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1147.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1147.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1148.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1148.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1149.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1149.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/114.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.114.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1150.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1150.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1151.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1151.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1152.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1152.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1153.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1153.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1154.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1154.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1155.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1155.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1156.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1156.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1157.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1157.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1158.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1158.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1159.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1159.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/115.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.115.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1160.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1160.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1161.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1161.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1162.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1162.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1163.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1163.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1164.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1164.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1165.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1165.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1166.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1166.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1167.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1167.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1168.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1168.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1169.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1169.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/116.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.116.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1170.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1170.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1171.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1171.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1172.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1172.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1173.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1173.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1174.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1174.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1175.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1175.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1176.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1176.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1177.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1177.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1178.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1178.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1179.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1179.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/117.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.117.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1180.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1180.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1181.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1181.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1182.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1182.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1183.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1183.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1184.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1184.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1185.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1185.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1186.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1186.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1187.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1187.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1188.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1188.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1189.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1189.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/118.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.118.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1190.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1190.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1191.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1191.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1192.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1192.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1193.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1193.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1194.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1194.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1195.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1195.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1196.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1196.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1197.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1197.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1198.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1198.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1199.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1199.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/119.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.119.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/11.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.11.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1200.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1200.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1201.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1201.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1202.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1202.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1203.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1203.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1204.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1204.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1205.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1205.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1206.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1206.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1207.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1207.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1208.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1208.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1209.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1209.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/120.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.120.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1210.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1210.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1211.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1211.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1212.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1212.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1213.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1213.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1214.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1214.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1215.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1215.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1216.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1216.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1217.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1217.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1218.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1218.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1219.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1219.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/121.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.121.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1220.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1220.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1221.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1221.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1222.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1222.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1223.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1223.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1224.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1224.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1225.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1225.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1226.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1226.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1227.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1227.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1228.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1228.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1229.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1229.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/122.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.122.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1230.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1230.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1231.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1231.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1232.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1232.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1233.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1233.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1234.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1234.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1235.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1235.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1236.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1236.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1237.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1237.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1238.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1238.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1239.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1239.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/123.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.123.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1240.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1240.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1241.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1241.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1242.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1242.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1243.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1243.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1244.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1244.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1245.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1245.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1246.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1246.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1247.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1247.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1248.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1248.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1249.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1249.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/124.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.124.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1250.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1250.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1251.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1251.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1252.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1252.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1253.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1253.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1254.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1254.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1255.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1255.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1256.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1256.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1257.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1257.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1258.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1258.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1259.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1259.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/125.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.125.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1260.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1260.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1261.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1261.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1262.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1262.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1263.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1263.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1264.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1264.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1265.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1265.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1266.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1266.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1267.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1267.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1268.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1268.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1269.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1269.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/126.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.126.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1270.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1270.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1271.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1271.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1272.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1272.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1273.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1273.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1274.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1274.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1275.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1275.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1276.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1276.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1277.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1277.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1278.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1278.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1279.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1279.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/127.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.127.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1280.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1280.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1281.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1281.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1282.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1282.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1283.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1283.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1284.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1284.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1285.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1285.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1286.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1286.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1287.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1287.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1288.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1288.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1289.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1289.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/128.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.128.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1290.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1290.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1291.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1291.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1292.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1292.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1293.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1293.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1294.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1294.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1295.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1295.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1296.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1296.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1297.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1297.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1298.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1298.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1299.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1299.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/129.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.129.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/12.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.12.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1300.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1300.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1301.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1301.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1302.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1302.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1303.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1303.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1304.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1304.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1305.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1305.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1306.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1306.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1307.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1307.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1308.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1308.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1309.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1309.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/130.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.130.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1310.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1310.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1311.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1311.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1312.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1312.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1313.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1313.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1314.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1314.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1315.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1315.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1316.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1316.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1317.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1317.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1318.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1318.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1319.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1319.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/131.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.131.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1320.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1320.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1321.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1321.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1322.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1322.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1323.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1323.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1324.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1324.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1325.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1325.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1326.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1326.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1327.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1327.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1328.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1328.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1329.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1329.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/132.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.132.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1330.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1330.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1331.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1331.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1332.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1332.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1333.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1333.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1334.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1334.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1335.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1335.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1336.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1336.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1337.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1337.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1338.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1338.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1339.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1339.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/133.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.133.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1340.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1340.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1341.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1341.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1342.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1342.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1343.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1343.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1344.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1344.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1345.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1345.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1346.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1346.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1347.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1347.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1348.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1348.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1349.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1349.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/134.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.134.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1350.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1350.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1351.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1351.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1352.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1352.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1353.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1353.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1354.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1354.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1355.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1355.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1356.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1356.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1357.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1357.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1358.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1358.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1359.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1359.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/135.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.135.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1360.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1360.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1361.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1361.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1362.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1362.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1363.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1363.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1364.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1364.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1365.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1365.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1366.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1366.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1367.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1367.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1368.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1368.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1369.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1369.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/136.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.136.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1370.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1370.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1371.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1371.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1372.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1372.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1373.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1373.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1374.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1374.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1375.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1375.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1376.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1376.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1377.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1377.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1378.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1378.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1379.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1379.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/137.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.137.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1380.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1380.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1381.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1381.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1382.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1382.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1383.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1383.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1384.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1384.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1385.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1385.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1386.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1386.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1387.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1387.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1388.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1388.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1389.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1389.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/138.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.138.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1390.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1390.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1391.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1391.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1392.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1392.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1393.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1393.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1394.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1394.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1395.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1395.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1396.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1396.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1397.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1397.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1398.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1398.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1399.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1399.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/139.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.139.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/13.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.13.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1400.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1400.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1401.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1401.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1402.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1402.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1403.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1403.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1404.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1404.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1405.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1405.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1406.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1406.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1407.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1407.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1408.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1408.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1409.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1409.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/140.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.140.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1410.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1410.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1411.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1411.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1412.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1412.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1413.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1413.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1414.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1414.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1415.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1415.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1416.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1416.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1417.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1417.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1418.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1418.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1419.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1419.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/141.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.141.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1420.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1420.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1421.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1421.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1422.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1422.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1423.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1423.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1424.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1424.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1425.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1425.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1426.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1426.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1427.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1427.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1428.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1428.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1429.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1429.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/142.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.142.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1430.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1430.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1431.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1431.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1432.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1432.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1433.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1433.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1434.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1434.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1435.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1435.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1436.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1436.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1437.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1437.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1438.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1438.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1439.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1439.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/143.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.143.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1440.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1440.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1441.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1441.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1442.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1442.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1443.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1443.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1444.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1444.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1445.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1445.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1446.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1446.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1447.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1447.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1448.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1448.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1449.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1449.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/144.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.144.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1450.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1450.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1451.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1451.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1452.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1452.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1453.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1453.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1454.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1454.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1455.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1455.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1456.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1456.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1457.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1457.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1458.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1458.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1459.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1459.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/145.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.145.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1460.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1460.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1461.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1461.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1462.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1462.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1463.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1463.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1464.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1464.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1465.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1465.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1466.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1466.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1467.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1467.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1468.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1468.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1469.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1469.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/146.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.146.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1470.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1470.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1471.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1471.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1472.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1472.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1473.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1473.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1474.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1474.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1475.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1475.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1476.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1476.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1477.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1477.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1478.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1478.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1479.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1479.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/147.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.147.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1480.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1480.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1481.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1481.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1482.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1482.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1483.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1483.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1484.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1484.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1485.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1485.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1486.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1486.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1487.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1487.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1488.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1488.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1489.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1489.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/148.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.148.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1490.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1490.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1491.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1491.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1492.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1492.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1493.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1493.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1494.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1494.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1495.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1495.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1496.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1496.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1497.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1497.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1498.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1498.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1499.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1499.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/149.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.149.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/14.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.14.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1500.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1500.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1501.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1501.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1502.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1502.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1503.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1503.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1504.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1504.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1505.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1505.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1506.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1506.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1507.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1507.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1508.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1508.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1509.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1509.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/150.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.150.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1510.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1510.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1511.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1511.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1512.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1512.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1513.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1513.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1514.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1514.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1515.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1515.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1516.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1516.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1517.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1517.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1518.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1518.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1519.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1519.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/151.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.151.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1520.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1520.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1521.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1521.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1522.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1522.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1523.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1523.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1524.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1524.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1525.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1525.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1526.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1526.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1527.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1527.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1528.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1528.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1529.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1529.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/152.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.152.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1530.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1530.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1531.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1531.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1532.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1532.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1533.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1533.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1534.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1534.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1535.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1535.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1536.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1536.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1537.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1537.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1538.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1538.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1539.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1539.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/153.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.153.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1540.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1540.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1541.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1541.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1542.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1542.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1543.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1543.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1544.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1544.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1545.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1545.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1546.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1546.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1547.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1547.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1548.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1548.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1549.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1549.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/154.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.154.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1550.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1550.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1551.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1551.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1552.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1552.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1553.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1553.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1554.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1554.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1555.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1555.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1556.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1556.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1557.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1557.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1558.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1558.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1559.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1559.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/155.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.155.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1560.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1560.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1561.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1561.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1562.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1562.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1563.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1563.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1564.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1564.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1565.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1565.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1566.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1566.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1567.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1567.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1568.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1568.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1569.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1569.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/156.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.156.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1570.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1570.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1571.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1571.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1572.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1572.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1573.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1573.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1574.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1574.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1575.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1575.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1576.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1576.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1577.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1577.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1578.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1578.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1579.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1579.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/157.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.157.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1580.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1580.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1581.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1581.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1582.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1582.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1583.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1583.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1584.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1584.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1585.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1585.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1586.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1586.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1587.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1587.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1588.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1588.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1589.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1589.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/158.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.158.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1590.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1590.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1591.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1591.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1592.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1592.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1593.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1593.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1594.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1594.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1595.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1595.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1596.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1596.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1597.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1597.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1598.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1598.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1599.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1599.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/159.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.159.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/15.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.15.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1600.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1600.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1601.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1601.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1602.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1602.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1603.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1603.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1604.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1604.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1605.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1605.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1606.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1606.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1607.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1607.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1608.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1608.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1609.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1609.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/160.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.160.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1610.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1610.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1611.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1611.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1612.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1612.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1613.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1613.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1614.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1614.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1615.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1615.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1616.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1616.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1617.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1617.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1618.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1618.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1619.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1619.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/161.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.161.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1620.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1620.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1621.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1621.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1622.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1622.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1623.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1623.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1624.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1624.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1625.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1625.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1626.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1626.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1627.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1627.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1628.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1628.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1629.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1629.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/162.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.162.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1630.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1630.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1631.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1631.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1632.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1632.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1633.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1633.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1634.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1634.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1635.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1635.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1636.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1636.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1637.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1637.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1638.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1638.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1639.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1639.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/163.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.163.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1640.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1640.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1641.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1641.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1642.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1642.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1643.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1643.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1644.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1644.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1645.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1645.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1646.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1646.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1647.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1647.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1648.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1648.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1649.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1649.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/164.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.164.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1650.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1650.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1651.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1651.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1652.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1652.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1653.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1653.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1654.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1654.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1655.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1655.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1656.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1656.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1657.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1657.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1658.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1658.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1659.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1659.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/165.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.165.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1660.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1660.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1661.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1661.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1662.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1662.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1663.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1663.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1664.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1664.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1665.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1665.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1666.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1666.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1667.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1667.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1668.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1668.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1669.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1669.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/166.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.166.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1670.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1670.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1671.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1671.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1672.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1672.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1673.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1673.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1674.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1674.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1675.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1675.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1676.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1676.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1677.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1677.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1678.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1678.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1679.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1679.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/167.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.167.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1680.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1680.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1681.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1681.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1682.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1682.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1683.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1683.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1684.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1684.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1685.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1685.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1686.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1686.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1687.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1687.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1688.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1688.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1689.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1689.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/168.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.168.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1690.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1690.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1691.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1691.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1692.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1692.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1693.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1693.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1694.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1694.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1695.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1695.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1696.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1696.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1697.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1697.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1698.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1698.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1699.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1699.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/169.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.169.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/16.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.16.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1700.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1700.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1701.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1701.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1702.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1702.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1703.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1703.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1704.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1704.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1705.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1705.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1706.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1706.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1707.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1707.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1708.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1708.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1709.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1709.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/170.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.170.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1710.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1710.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1711.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1711.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1712.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1712.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1713.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1713.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1714.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1714.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1715.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1715.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1716.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1716.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1717.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1717.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1718.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1718.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1719.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1719.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/171.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.171.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1720.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1720.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1721.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1721.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1722.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1722.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1723.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1723.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1724.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1724.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1725.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1725.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1726.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1726.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1727.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1727.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1728.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1728.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1729.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1729.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/172.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.172.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1730.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1730.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1731.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1731.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1732.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1732.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1733.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1733.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1734.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1734.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1735.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1735.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1736.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1736.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1737.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1737.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1738.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1738.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1739.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1739.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/173.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.173.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1740.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1740.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1741.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1741.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1742.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1742.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1743.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1743.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1744.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1744.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1745.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1745.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1746.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1746.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1747.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1747.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1748.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1748.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1749.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1749.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/174.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.174.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1750.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1750.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1751.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1751.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1752.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1752.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1753.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1753.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1754.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1754.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1755.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1755.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1756.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1756.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1757.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1757.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1758.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1758.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1759.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1759.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/175.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.175.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1760.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1760.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1761.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1761.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1762.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1762.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1763.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1763.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1764.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1764.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1765.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1765.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1766.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1766.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1767.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1767.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1768.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1768.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1769.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1769.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/176.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.176.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1770.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1770.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1771.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1771.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1772.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1772.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1773.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1773.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1774.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1774.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1775.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1775.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1776.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1776.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1777.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1777.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1778.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1778.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1779.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1779.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/177.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.177.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1780.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1780.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1781.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1781.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1782.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1782.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1783.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1783.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1784.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1784.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1785.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1785.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1786.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1786.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1787.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1787.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1788.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1788.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1789.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1789.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/178.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.178.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1790.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1790.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1791.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1791.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1792.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1792.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1793.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1793.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1794.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1794.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1795.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1795.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1796.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1796.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1797.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1797.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1798.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1798.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1799.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1799.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/179.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.179.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/17.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.17.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1800.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1800.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1801.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1801.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1802.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1802.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1803.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1803.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1804.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1804.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1805.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1805.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1806.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1806.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1807.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1807.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1808.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1808.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1809.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1809.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/180.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.180.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1810.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1810.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1811.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1811.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1812.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1812.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1813.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1813.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1814.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1814.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1815.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1815.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1816.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1816.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1817.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1817.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1818.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1818.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1819.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1819.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/181.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.181.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1820.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1820.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1821.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1821.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1822.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1822.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1823.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1823.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1824.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1824.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1825.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1825.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1826.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1826.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1827.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1827.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1828.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1828.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1829.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1829.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/182.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.182.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1830.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1830.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1831.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1831.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1832.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1832.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1833.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1833.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1834.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1834.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1835.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1835.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1836.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1836.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1837.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1837.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1838.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1838.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1839.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1839.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/183.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.183.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1840.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1840.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1841.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1841.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1842.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1842.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1843.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1843.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1844.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1844.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1845.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1845.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1846.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1846.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1847.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1847.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1848.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1848.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1849.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1849.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/184.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.184.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1850.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1850.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1851.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1851.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1852.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1852.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1853.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1853.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1854.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1854.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1855.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1855.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1856.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1856.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1857.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1857.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1858.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1858.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1859.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1859.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/185.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.185.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1860.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1860.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1861.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1861.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1862.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1862.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1863.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1863.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1864.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1864.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1865.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1865.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1866.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1866.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1867.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1867.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1868.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1868.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1869.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1869.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/186.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.186.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1870.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1870.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1871.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1871.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1872.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1872.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1873.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1873.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1874.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1874.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1875.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1875.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1876.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1876.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1877.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1877.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1878.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1878.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1879.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1879.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/187.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.187.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1880.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1880.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1881.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1881.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1882.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1882.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1883.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1883.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1884.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1884.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1885.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1885.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1886.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1886.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1887.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1887.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1888.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1888.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1889.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1889.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/188.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.188.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1890.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1890.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1891.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1891.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1892.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1892.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1893.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1893.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1894.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1894.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1895.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1895.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1896.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1896.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1897.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1897.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1898.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1898.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1899.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1899.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/189.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.189.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/18.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.18.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1900.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1900.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1901.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1901.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1902.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1902.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1903.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1903.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1904.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1904.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1905.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1905.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1906.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1906.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1907.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1907.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1908.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1908.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1909.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1909.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/190.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.190.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1910.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1910.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1911.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1911.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1912.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1912.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1913.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1913.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1914.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1914.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1915.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1915.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1916.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1916.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/191.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.191.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/192.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.192.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/193.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.193.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/194.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.194.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/195.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.195.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/196.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.196.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/197.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.197.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/198.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.198.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/199.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.199.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/19.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.19.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/1.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.1.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/200.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.200.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/201.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.201.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/202.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.202.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/203.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.203.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/204.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.204.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/205.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.205.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/206.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.206.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/207.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.207.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/208.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.208.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/209.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.209.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/20.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.20.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/210.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.210.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/211.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.211.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/212.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.212.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/213.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.213.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/214.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.214.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/215.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.215.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/216.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.216.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/217.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.217.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/218.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.218.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/219.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.219.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/21.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.21.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/220.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.220.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/221.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.221.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/222.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.222.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/223.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.223.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/224.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.224.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/225.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.225.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/226.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.226.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/227.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.227.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/228.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.228.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/229.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.229.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/22.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.22.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/230.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.230.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/231.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.231.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/232.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.232.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/233.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.233.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/234.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.234.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/235.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.235.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/236.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.236.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/237.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.237.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/238.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.238.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/239.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.239.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/23.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.23.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/240.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.240.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/241.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.241.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/242.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.242.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/243.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.243.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/244.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.244.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/245.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.245.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/246.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.246.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/247.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.247.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/248.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.248.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/249.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.249.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/24.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.24.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/250.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.250.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/251.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.251.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/252.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.252.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/253.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.253.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/254.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.254.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/255.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.255.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/256.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.256.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/257.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.257.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/258.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.258.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/259.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.259.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/25.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.25.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/260.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.260.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/261.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.261.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/262.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.262.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/263.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.263.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/264.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.264.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/265.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.265.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/266.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.266.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/267.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.267.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/268.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.268.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/269.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.269.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/26.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.26.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/270.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.270.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/271.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.271.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/272.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.272.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/273.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.273.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/274.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.274.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/275.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.275.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/276.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.276.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/277.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.277.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/278.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.278.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/279.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.279.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/27.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.27.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/280.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.280.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/281.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.281.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/282.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.282.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/283.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.283.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/284.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.284.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/285.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.285.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/286.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.286.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/287.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.287.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/288.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.288.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/289.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.289.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/28.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.28.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/290.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.290.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/291.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.291.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/292.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.292.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/293.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.293.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/294.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.294.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/295.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.295.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/296.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.296.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/297.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.297.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/298.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.298.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/299.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.299.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/29.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.29.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/2.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.2.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/300.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.300.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/301.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.301.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/302.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.302.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/303.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.303.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/304.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.304.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/305.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.305.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/306.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.306.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/307.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.307.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/308.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.308.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/309.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.309.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/30.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.30.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/310.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.310.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/311.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.311.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/312.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.312.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/313.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.313.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/314.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.314.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/315.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.315.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/316.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.316.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/317.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.317.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/318.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.318.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/319.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.319.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/31.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.31.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/320.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.320.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/321.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.321.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/322.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.322.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/323.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.323.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/324.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.324.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/325.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.325.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/326.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.326.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/327.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.327.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/328.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.328.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/329.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.329.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/32.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.32.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/330.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.330.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/331.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.331.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/332.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.332.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/333.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.333.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/334.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.334.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/335.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.335.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/336.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.336.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/337.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.337.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/338.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.338.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/339.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.339.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/33.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.33.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/340.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.340.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/341.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.341.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/342.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.342.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/343.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.343.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/344.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.344.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/345.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.345.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/346.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.346.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/347.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.347.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/348.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.348.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/349.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.349.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/350.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.350.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/351.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.351.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/352.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.352.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/353.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.353.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/354.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.354.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/355.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.355.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/356.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.356.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/357.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.357.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/358.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.358.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/359.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.359.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/35.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.35.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/360.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.360.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/361.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.361.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/362.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.362.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/363.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.363.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/364.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.364.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/365.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.365.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/366.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.366.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/367.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.367.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/368.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.368.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/369.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.369.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/36.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.36.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/370.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.370.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/371.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.371.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/372.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.372.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/373.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.373.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/374.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.374.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/375.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.375.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/376.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.376.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/377.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.377.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/378.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.378.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/379.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.379.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/37.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.37.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/380.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.380.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/381.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.381.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/382.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.382.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/383.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.383.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/384.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.384.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/385.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.385.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/386.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.386.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/387.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.387.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/388.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.388.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/389.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.389.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/38.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.38.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/390.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.390.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/391.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.391.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/392.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.392.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/393.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.393.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/394.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.394.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/395.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.395.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/396.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.396.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/397.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.397.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/398.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.398.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/399.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.399.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/39.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.39.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/3.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.3.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/400.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.400.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/401.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.401.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/402.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.402.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/403.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.403.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/404.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.404.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/405.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.405.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/406.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.406.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/407.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.407.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/408.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.408.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/409.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.409.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/40.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.40.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/410.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.410.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/411.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.411.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/412.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.412.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/413.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.413.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/414.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.414.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/415.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.415.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/416.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.416.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/417.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.417.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/418.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.418.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/419.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.419.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/41.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.41.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/420.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.420.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/421.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.421.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/422.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.422.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/423.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.423.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/424.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.424.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/425.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.425.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/426.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.426.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/427.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.427.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/428.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.428.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/429.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.429.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/42.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.42.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/430.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.430.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/431.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.431.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/432.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.432.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/433.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.433.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/434.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.434.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/435.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.435.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/436.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.436.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/437.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.437.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/438.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.438.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/439.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.439.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/43.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.43.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/440.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.440.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/441.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.441.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/442.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.442.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/443.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.443.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/444.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.444.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/445.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.445.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/446.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.446.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/447.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.447.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/448.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.448.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/449.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.449.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/44.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.44.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/450.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.450.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/451.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.451.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/452.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.452.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/453.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.453.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/454.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.454.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/455.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.455.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/456.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.456.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/457.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.457.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/458.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.458.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/459.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.459.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/45.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.45.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/460.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.460.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/461.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.461.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/462.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.462.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/463.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.463.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/464.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.464.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/465.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.465.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/466.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.466.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/467.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.467.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/468.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.468.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/469.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.469.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/46.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.46.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/470.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.470.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/471.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.471.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/472.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.472.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/473.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.473.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/474.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.474.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/475.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.475.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/476.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.476.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/477.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.477.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/478.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.478.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/479.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.479.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/47.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.47.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/480.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.480.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/481.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.481.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/482.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.482.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/483.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.483.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/484.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.484.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/485.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.485.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/486.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.486.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/487.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.487.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/488.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.488.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/489.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.489.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/48.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.48.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/490.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.490.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/491.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.491.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/492.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.492.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/493.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.493.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/494.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.494.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/495.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.495.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/496.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.496.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/497.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.497.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/498.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.498.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/499.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.499.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/49.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.49.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/4.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.4.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/500.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.500.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/501.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.501.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/502.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.502.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/503.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.503.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/504.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.504.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/505.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.505.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/506.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.506.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/507.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.507.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/508.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.508.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/509.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.509.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/50.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.50.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/510.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.510.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/511.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.511.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/512.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.512.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/513.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.513.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/514.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.514.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/515.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.515.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/516.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.516.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/517.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.517.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/518.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.518.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/519.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.519.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/51.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.51.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/520.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.520.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/521.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.521.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/522.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.522.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/523.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.523.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/524.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.524.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/525.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.525.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/526.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.526.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/527.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.527.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/528.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.528.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/529.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.529.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/52.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.52.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/530.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.530.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/531.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.531.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/532.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.532.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/533.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.533.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/534.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.534.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/535.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.535.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/536.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.536.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/537.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.537.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/538.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.538.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/539.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.539.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/53.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.53.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/540.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.540.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/541.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.541.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/542.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.542.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/543.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.543.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/544.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.544.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/545.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.545.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/546.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.546.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/547.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.547.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/548.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.548.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/549.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.549.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/54.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.54.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/550.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.550.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/551.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.551.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/552.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.552.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/553.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.553.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/554.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.554.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/555.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.555.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/556.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.556.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/557.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.557.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/558.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.558.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/559.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.559.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/55.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.55.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/560.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.560.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/561.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.561.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/562.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.562.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/563.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.563.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/564.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.564.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/565.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.565.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/566.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.566.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/567.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.567.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/568.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.568.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/569.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.569.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/56.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.56.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/570.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.570.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/571.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.571.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/572.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.572.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/573.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.573.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/574.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.574.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/575.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.575.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/576.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.576.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/577.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.577.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/578.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.578.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/579.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.579.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/57.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.57.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/580.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.580.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/581.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.581.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/582.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.582.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/583.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.583.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/584.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.584.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/585.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.585.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/586.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.586.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/587.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.587.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/588.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.588.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/589.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.589.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/58.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.58.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/590.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.590.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/591.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.591.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/592.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.592.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/593.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.593.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/594.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.594.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/595.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.595.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/596.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.596.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/597.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.597.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/598.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.598.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/599.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.599.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/59.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.59.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/5.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.5.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/600.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.600.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/601.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.601.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/602.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.602.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/603.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.603.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/604.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.604.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/605.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.605.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/606.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.606.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/607.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.607.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/608.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.608.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/609.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.609.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/60.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.60.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/610.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.610.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/611.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.611.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/612.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.612.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/613.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.613.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/614.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.614.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/615.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.615.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/616.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.616.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/617.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.617.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/618.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.618.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/619.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.619.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/61.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.61.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/620.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.620.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/621.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.621.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/622.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.622.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/623.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.623.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/624.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.624.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/625.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.625.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/626.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.626.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/627.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.627.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/628.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.628.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/629.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.629.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/62.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.62.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/630.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.630.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/631.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.631.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/632.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.632.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/633.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.633.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/634.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.634.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/635.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.635.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/636.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.636.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/637.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.637.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/638.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.638.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/639.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.639.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/63.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.63.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/640.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.640.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/641.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.641.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/642.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.642.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/643.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.643.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/644.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.644.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/645.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.645.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/646.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.646.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/647.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.647.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/648.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.648.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/649.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.649.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/64.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.64.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/650.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.650.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/651.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.651.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/652.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.652.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/653.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.653.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/654.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.654.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/655.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.655.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/656.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.656.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/657.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.657.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/658.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.658.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/659.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.659.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/65.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.65.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/660.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.660.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/661.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.661.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/662.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.662.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/663.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.663.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/664.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.664.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/665.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.665.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/666.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.666.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/667.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.667.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/668.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.668.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/669.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.669.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/66.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.66.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/670.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.670.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/671.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.671.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/672.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.672.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/673.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.673.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/674.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.674.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/675.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.675.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/676.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.676.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/677.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.677.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/678.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.678.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/679.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.679.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/67.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.67.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/680.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.680.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/681.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.681.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/682.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.682.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/683.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.683.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/684.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.684.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/685.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.685.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/686.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.686.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/687.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.687.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/688.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.688.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/689.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.689.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/68.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.68.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/690.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.690.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/691.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.691.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/692.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.692.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/693.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.693.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/694.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.694.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/695.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.695.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/696.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.696.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/697.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.697.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/698.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.698.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/699.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.699.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/69.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.69.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/6.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.6.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/700.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.700.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/701.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.701.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/702.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.702.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/703.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.703.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/704.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.704.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/705.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.705.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/706.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.706.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/707.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.707.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/708.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.708.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/709.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.709.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/70.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.70.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/710.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.710.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/711.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.711.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/712.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.712.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/713.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.713.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/714.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.714.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/715.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.715.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/716.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.716.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/717.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.717.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/718.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.718.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/719.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.719.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/71.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.71.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/720.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.720.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/721.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.721.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/722.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.722.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/723.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.723.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/724.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.724.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/725.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.725.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/726.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.726.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/727.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.727.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/728.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.728.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/729.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.729.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/72.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.72.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/730.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.730.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/731.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.731.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/732.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.732.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/733.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.733.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/734.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.734.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/735.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.735.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/736.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.736.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/737.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.737.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/738.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.738.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/739.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.739.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/73.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.73.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/740.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.740.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/741.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.741.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/742.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.742.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/743.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.743.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/744.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.744.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/745.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.745.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/746.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.746.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/747.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.747.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/748.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.748.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/749.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.749.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/74.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.74.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/750.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.750.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/751.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.751.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/752.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.752.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/753.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.753.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/754.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.754.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/755.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.755.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/756.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.756.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/757.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.757.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/758.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.758.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/759.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.759.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/75.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.75.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/760.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.760.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/761.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.761.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/762.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.762.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/763.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.763.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/764.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.764.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/765.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.765.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/766.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.766.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/767.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.767.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/768.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.768.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/769.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.769.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/76.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.76.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/770.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.770.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/771.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.771.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/772.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.772.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/773.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.773.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/774.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.774.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/775.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.775.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/776.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.776.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/777.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.777.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/778.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.778.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/779.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.779.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/77.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.77.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/780.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.780.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/781.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.781.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/782.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.782.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/783.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.783.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/784.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.784.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/785.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.785.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/786.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.786.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/787.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.787.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/788.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.788.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/789.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.789.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/78.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.78.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/790.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.790.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/791.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.791.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/792.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.792.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/793.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.793.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/794.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.794.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/795.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.795.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/796.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.796.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/797.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.797.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/798.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.798.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/799.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.799.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/79.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.79.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/7.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.7.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/800.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.800.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/801.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.801.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/802.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.802.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/803.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.803.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/804.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.804.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/805.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.805.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/806.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.806.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/807.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.807.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/808.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.808.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/809.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.809.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/80.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.80.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/810.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.810.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/811.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.811.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/812.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.812.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/813.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.813.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/814.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.814.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/815.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.815.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/816.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.816.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/817.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.817.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/818.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.818.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/819.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.819.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/81.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.81.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/820.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.820.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/821.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.821.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/822.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.822.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/823.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.823.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/824.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.824.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/825.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.825.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/826.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.826.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/827.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.827.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/828.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.828.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/829.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.829.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/82.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.82.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/830.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.830.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/831.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.831.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/832.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.832.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/833.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.833.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/834.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.834.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/835.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.835.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/836.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.836.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/837.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.837.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/838.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.838.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/839.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.839.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/83.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.83.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/840.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.840.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/841.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.841.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/842.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.842.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/843.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.843.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/844.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.844.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/845.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.845.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/846.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.846.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/847.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.847.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/848.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.848.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/849.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.849.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/84.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.84.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/850.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.850.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/851.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.851.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/852.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.852.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/853.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.853.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/854.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.854.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/855.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.855.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/856.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.856.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/857.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.857.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/858.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.858.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/859.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.859.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/85.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.85.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/860.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.860.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/861.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.861.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/862.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.862.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/863.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.863.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/864.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.864.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/865.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.865.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/866.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.866.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/867.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.867.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/868.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.868.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/869.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.869.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/86.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.86.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/870.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.870.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/871.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.871.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/872.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.872.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/873.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.873.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/874.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.874.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/875.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.875.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/876.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.876.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/877.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.877.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/878.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.878.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/879.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.879.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/87.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.87.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/880.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.880.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/881.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.881.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/882.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.882.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/883.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.883.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/884.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.884.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/885.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.885.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/886.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.886.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/887.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.887.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/888.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.888.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/889.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.889.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/88.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.88.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/890.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.890.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/891.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.891.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/892.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.892.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/893.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.893.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/894.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.894.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/895.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.895.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/896.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.896.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/897.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.897.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/898.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.898.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/899.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.899.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/89.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.89.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/8.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.8.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/900.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.900.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/901.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.901.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/902.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.902.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/903.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.903.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/904.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.904.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/905.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.905.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/906.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.906.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/907.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.907.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/908.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.908.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/909.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.909.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/90.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.90.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/910.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.910.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/911.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.911.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/912.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.912.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/913.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.913.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/914.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.914.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/915.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.915.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/916.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.916.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/917.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.917.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/918.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.918.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/919.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.919.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/91.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.91.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/920.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.920.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/921.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.921.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/922.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.922.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/923.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.923.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/924.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.924.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/925.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.925.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/926.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.926.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/927.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.927.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/928.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.928.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/929.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.929.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/92.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.92.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/930.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.930.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/931.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.931.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/932.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.932.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/933.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.933.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/934.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.934.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/935.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.935.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/936.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.936.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/937.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.937.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/938.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.938.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/939.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.939.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/93.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.93.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/940.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.940.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/941.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.941.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/942.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.942.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/943.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.943.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/944.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.944.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/945.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.945.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/946.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.946.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/947.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.947.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/948.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.948.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/949.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.949.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/94.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.94.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/950.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.950.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/951.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.951.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/952.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.952.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/953.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.953.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/954.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.954.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/955.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.955.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/956.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.956.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/957.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.957.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/958.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.958.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/959.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.959.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/95.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.95.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/960.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.960.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/961.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.961.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/962.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.962.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/963.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.963.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/964.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.964.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/965.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.965.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/966.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.966.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/967.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.967.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/968.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.968.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/969.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.969.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/96.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.96.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/970.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.970.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/971.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.971.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/972.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.972.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/973.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.973.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/974.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.974.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/975.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.975.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/976.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.976.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/977.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.977.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/978.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.978.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/979.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.979.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/97.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.97.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/980.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.980.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/981.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.981.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/982.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.982.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/983.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.983.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/984.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.984.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/985.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.985.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/986.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.986.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/987.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.987.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/988.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.988.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/989.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.989.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/98.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.98.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/990.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.990.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/991.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.991.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/992.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.992.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/993.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.993.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/994.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.994.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/995.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.995.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/996.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.996.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/997.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.997.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/998.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.998.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/999.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.999.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/99.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.99.tombo.m6A-only -m6A-only
python /oak/stanford/groups/akundaje/marinovg/code/bisulfite/TomboSingleReadsExtract-tombo_de_novo-1.5.py /oak/stanford/groups/wjg/zshipony/Nanopore/PromethION/2019_11_01_S2_SizeSelection/output/tombo_denovo/9.tombo.per_read_stats /oak/stanford/groups/akundaje/marinovg/genomes/dm3/sequence/dm3.fa 2019_11_01_S2_SizeSelection.9.tombo.m6A-only -m6A-only